Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00390000013264.d #7	ENSGT00390000010172 #8	ENSGT00390000003428 #9	ENSGT00440000033811 #11	ENSGT00940000161471	ENSGT00940000165267 #12	ENSGT01030000238073 #10	ENSGT00940000159453 #14	ENSGT00940000158640 #15	ENSGT00940000162193 #16	ENSGT00510000048726 #17	ENSGT00940000160654 #18	ENSGT00940000157580 #19	ENSGT00390000005261 #20	ENSGT00500000044920 #21	ENSGT00940000156710 #22	ENSGT00940000155626 #23	ENSGT00940000156021 #24	ENSGT00940000156043	ENSGT00390000003601.b #25	ENSGT00940000158757 #26	ENSGT01060000248700 #27	ENSGT00940000162578	ENSGT00390000011192 #28	ENSGT00940000158643 #29	ENSGT00940000153284.b #30	ENSGT00390000013532.j #31	ENSGT00390000013532.i ##31	ENSGT00390000008110 #32	ENSGT00940000156935 #33	ENSGT00510000048509 #34
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00940000159397	ENSGT00390000013264.d #7	ENSGT00390000010172 #8	ENSGT00390000003428 #9	ENSGT00440000033811 #11	ENSGT00940000165267 #12	ENSGT01030000238073 #10	ENSGT00940000159453 #14	ENSGT00940000158640 #15	ENSGT00940000162193 #16	ENSGT00510000048726 #17	ENSGT00940000160654 #18	ENSGT00940000157580 #19	ENSGT00390000005261 #20	ENSGT00500000044920 #21	ENSGT00940000156710 #22	ENSGT00940000155626 #23	ENSGT00940000156021 #24	ENSGT00940000156043	ENSGT00390000003601.b #25	ENSGT00940000158757 #26	ENSGT00940000162578	ENSGT00390000011192 #28	ENSGT00940000158643 #29	ENSGT00940000153284.b #30	ENSGT00390000013532.j #31	ENSGT00390000013532.i ##31	ENSGT00390000008110 #32	ENSGT00940000156935 #33	ENSGT00510000048509 #34	ENSGT00530000063690.a.b.a.b #35
Hystricomorpha_b	ANCESTRAL SPECIES	76	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264.d #7	ENSGT00390000010172 #8	ENSGT00390000003428 #9	ENSGT00440000033811 #11	ENSGT00940000165267 #12	ENSGT00940000159453 #14	ENSGT00940000158640 #15	ENSGT00940000162193 #16	ENSGT00510000048726 #17	ENSGT00940000160654 #18	ENSGT00940000157580 #19	ENSGT00390000005261 #20	ENSGT00500000044920 #21	ENSGT00940000156710 #22	ENSGT00940000155626 #23	ENSGT00940000156021 #24	ENSGT00940000156043	ENSGT00390000003601.b #25	ENSGT00940000158757 #26	ENSGT01060000248700 #27	ENSGT00390000011192 #28	ENSGT00940000158643 #29	ENSGT00940000153284.b #30	ENSGT00390000013532.j #31	ENSGT00390000013532.i ##31	ENSGT00390000008110 #32	ENSGT00940000156935 #33	ENSGT00510000048509 #34	ENSGT00530000063690.a.b.a.b #35
Long-tailed chinchilla	MODERN SPECIES	154	SRP72 (ENSCLAG00000003571) #7	PAICS (ENSCLAG00000005063) #8	PPAT (ENSCLAG00000004229) #9	ENSCLAG00000004994 #10	AASDH (ENSCLAG00000005208) #11	ENSCLAG00000005580 #12	ENSCLAG00000006063 #13	CEP135 (ENSCLAG00000003843) #14	EXOC1 (ENSCLAG00000011547) #15	EXOC1L (ENSCLAG00000003403) #16	NMU (ENSCLAG00000003714) #17	PDCL2 (ENSCLAG00000004036) #18	CLOCK (ENSCLAG00000004837) #19	TMEM165 (ENSCLAG00000005359) #20	SRD5A3 (ENSCLAG00000014169) #21	KDR (ENSCLAG00000010052) #22	KIT (ENSCLAG00000006440) #23	PDGFRA (ENSCLAG00000005250) #24	CHIC2 (ENSCLAG00000005438) #25	LNX1 (ENSCLAG00000005760) #26	ENSCLAG00000003675 #27	SCFD2 (ENSCLAG00000006610) #28	RASL11B (ENSCLAG00000005450) #29	USP46 (ENSCLAG00000006241) #30	ENSCLAG00000006715 #31	SGCB (ENSCLAG00000008014) #32	DCUN1D4 (ENSCLAG00000008724) #33	CWH43 (ENSCLAG00000011864) #34	OCIAD2 (ENSCLAG00000012791) #35	OCIAD1 (ENSCLAG00000004026) #36	FRYL (ENSCLAG00000004818) #37
Degu	MODERN SPECIES	60	ENSODEG00000010449	SRP72 (ENSODEG00000012214) #7	ENSODEG00000009422 #8	PPAT (ENSODEG00000009426) #9	AASDH (ENSODEG00000011546) #11	ENSODEG00000010954 #12	CEP135 (ENSODEG00000010808) #14	EXOC1 (ENSODEG00000010280) #15	EXOC1L (ENSODEG00000011413) #16	NMU (ENSODEG00000010066) #17	PDCL2 (ENSODEG00000009736) #18	CLOCK (ENSODEG00000009397) #19	TMEM165 (ENSODEG00000009162) #20	SRD5A3 (ENSODEG00000009796) #21	ENSODEG00000012100	KDR (ENSODEG00000009430) #22	KIT (ENSODEG00000012738) #23	ENSODEG00000011811	PDGFRA (ENSODEG00000009544) #24	GSX2 (ENSODEG00000009015)	CHIC2 (ENSODEG00000009727) #25	ENSODEG00000019624	ENSODEG00000009055	ENSODEG00000008952	ENSODEG00000008823	LNX1 (ENSODEG00000010836) #26	ENSODEG00000009001 #27	ENSODEG00000019669	ENSODEG00000008819	SCFD2 (ENSODEG00000010104) #28	RASL11B (ENSODEG00000010294) #29
Guinea pig	MODERN SPECIES	24	ENSCPOG00000000220	SRP72 (ENSCPOG00000000218) #7	ENSCPOG00000010749 #8	PPAT (ENSCPOG00000000216) #9	AASDH (ENSCPOG00000000215) #11	ENSCPOG00000040605 #12	ENSCPOG00000000214 #10	CEP135 (ENSCPOG00000003212) #14	EXOC1 (ENSCPOG00000003208) #15	EXOC1L (ENSCPOG00000040720) #16	NMU (ENSCPOG00000009016) #17	PDCL2 (ENSCPOG00000036525) #18	CLOCK (ENSCPOG00000011807) #19	TMEM165 (ENSCPOG00000011803) #20	SRD5A3 (ENSCPOG00000011801) #21	KDR (ENSCPOG00000010001) #22	KIT (ENSCPOG00000011411) #23	PDGFRA (ENSCPOG00000011782) #24	GSX2 (ENSCPOG00000005837)	CHIC2 (ENSCPOG00000040036) #25	LNX1 (ENSCPOG00000010775) #26	ENSCPOG00000010770	SCFD2 (ENSCPOG00000039431) #28	RASL11B (ENSCPOG00000010760) #29	USP46 (ENSCPOG00000007660) #30	ENSCPOG00000011469 #31	SGCB (ENSCPOG00000030752) #32	DCUN1D4 (ENSCPOG00000008945) #33	CWH43 (ENSCPOG00000014177) #34	ENSCPOG00000019887 #35	OCIAD1 (ENSCPOG00000011863) #36
Naked mole-rat female	MODERN SPECIES	1	SRP72 (ENSHGLG00000009791) #7	PAICS (ENSHGLG00000016700) #8	PPAT (ENSHGLG00000015015) #9	AASDH (ENSHGLG00000015134) #11	CRACD (ENSHGLG00000016718)	ENSHGLG00000044551	CEP135 (ENSHGLG00000015882) #14	EXOC1 (ENSHGLG00000016475) #15	EXOC1L (ENSHGLG00000018199) #16	NMU (ENSHGLG00000006706) #17	PDCL2 (ENSHGLG00000008374) #18	CLOCK (ENSHGLG00000016989) #19	ENSHGLG00000017032	TMEM165 (ENSHGLG00000018297) #20	SRD5A3 (ENSHGLG00000006595) #21	KDR (ENSHGLG00000011062) #22	KIT (ENSHGLG00000006129) #23	PDGFRA (ENSHGLG00000007320) #24	GSX2 (ENSHGLG00000016176)	CHIC2 (ENSHGLG00000016294) #25	ENSHGLG00000037646	LNX1 (ENSHGLG00000017095) #26	FIP1L1 (ENSHGLG00000018937) #27	SCFD2 (ENSHGLG00000008861) #28	ENSHGLG00000035001	RASL11B (ENSHGLG00000018686) #29	ENSHGLG00000048480	USP46 (ENSHGLG00000018346) #30	ENSHGLG00000015649	SPATA18 (ENSHGLG00000040259) #31	ENSHGLG00000038499