Murinae	ANCESTRAL SPECIES	13							ENSGT00940000154511.b #14	ENSGT00940000159968 #15	ENSGT00740000115534.a.b.f.a.a #16	ENSGT01050000244824.A #17	ENSGT00940000155633.D #18	ENSGT00390000014845 #19	ENSGT00940000163032	ENSGT00390000014654 #20	ENSGT00940000158677 #21	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00900000141099.c #26	ENSGT00940000164874 #27	ENSGT00940000161017 #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453 #33	ENSGT00940000153189.A #34	ENSGT00390000004807 #35	ENSGT00940000160018 #36	ENSGT00390000002259 #37	ENSGT00390000002575	ENSGT00940000153654
Mus	ANCESTRAL SPECIES	13	ENSGT00390000002393 #8	ENSGT00390000000111.b.b #9	ENSGT00940000155421.b #10	ENSGT00390000007773 #11	ENSGT00940000160271 #12	ENSGT00940000161777.a.b #13	ENSGT00940000154511.b #14	ENSGT00940000159968 #15	ENSGT00740000115534.a.b.f.a.a #16	ENSGT01050000244824.A #17	ENSGT00940000155633.D #18	ENSGT00390000014845 #19	ENSGT00940000163032	ENSGT00390000014654 #20	ENSGT00940000158677 #21	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #26	ENSGT00940000164874 #27	ENSGT00940000161017.h #28	ENSGT00940000161017.g #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453 #33	ENSGT00940000153189.A #34	ENSGT00390000004807 #35	ENSGT00940000160018 #36	ENSGT00390000002259 #37
Shrew mouse	MODERN SPECIES	3	Bmerb1 (MGP_PahariEiJ_G0016181) #7	Marf1 (MGP_PahariEiJ_G0016182) #8	Nde1 (MGP_PahariEiJ_G0016183) #9	Myh11 (MGP_PahariEiJ_G0016184) #10	Cep20 (MGP_PahariEiJ_G0016185) #11	Abcc1 (MGP_PahariEiJ_G0016186) #12	MGP_PahariEiJ_G0016187 #13	Snai2 (MGP_PahariEiJ_G0016188) #14	Efcab1 (MGP_PahariEiJ_G0016189) #15	Ube2v2 (MGP_PahariEiJ_G0016190) #16	Mcm4 (MGP_PahariEiJ_G0016191) #17	Prkdc (MGP_PahariEiJ_G0016192) #18	Mzt2 (MGP_PahariEiJ_G0016193) #19	Spidr (MGP_PahariEiJ_G0016194) #20	Pkp2 (MGP_PahariEiJ_G0016195) #21	Yars2 (MGP_PahariEiJ_G0016196) #22	Dnm1l (MGP_PahariEiJ_G0016197) #23	Fgd4 (MGP_PahariEiJ_G0016198) #24	Or7a40 (MGP_PahariEiJ_G0016199) #25	Spag6l (MGP_PahariEiJ_G0016200) #26	Igll1 (MGP_PahariEiJ_G0016201) #27	MGP_PahariEiJ_G0016202 #28	MGP_PahariEiJ_G0016203 #29	Top3b (MGP_PahariEiJ_G0016204) #30	Ppm1f (MGP_PahariEiJ_G0016205) #31	Mapk1 (MGP_PahariEiJ_G0016206) #32	MGP_PahariEiJ_G0016207 #33	Ppil2 (MGP_PahariEiJ_G0016208) #34	2610318N02Rik (MGP_PahariEiJ_G0016209) #35	Sdf2l1 (MGP_PahariEiJ_G0016210) #36	Ccdc116 (MGP_PahariEiJ_G0016211) #37
Mus_A	ANCESTRAL SPECIES	18	ENSGT00390000000111.b.b #9	ENSGT00940000155421.b #10	ENSGT00390000007773 #11	ENSGT00940000160271 #12	ENSGT00940000161777.a.b #13	ENSGT00940000168647	ENSGT00940000154511.b #14	ENSGT00940000159968 #15	ENSGT00740000115534.a.b.f.a.a #16	ENSGT01050000244824.A #17	ENSGT00940000155633.D #18	ENSGT00390000014845 #19	ENSGT00940000163032	ENSGT00390000014654 #20	ENSGT00940000158677 #21	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #26	ENSGT00940000164874 #27	ENSGT00940000161017.h #28	ENSGT00940000161017.g #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453 #33	ENSGT00940000153189.A #34	ENSGT00390000004807 #35	ENSGT00940000160018 #36	ENSGT00390000002259 #37
Mus_B	ANCESTRAL SPECIES	18	ENSGT00390000000111.b.b #9	ENSGT00940000155421.b #10	ENSGT00390000007773 #11	ENSGT00940000160271 #12	ENSGT00940000161777.a.b #13	ENSGT00940000168647	ENSGT00940000154511.b #14	ENSGT00940000159968 #15	ENSGT00740000115534.a.b.f.a.a #16	ENSGT01050000244824.A #17	ENSGT00940000155633.D #18	ENSGT00390000014845 #19	ENSGT00940000163032	ENSGT00390000014654 #20	ENSGT00940000158677 #21	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #26	ENSGT00940000164874 #27	ENSGT00940000161017.h #28	ENSGT00940000161017.g.a #29	ENSGT00940000161017.g.b #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453 #33	ENSGT00940000153189.A #34	ENSGT00390000004807 #35	ENSGT00940000160018 #36
Mouse	MODERN SPECIES	7	Bmerb1 (ENSMUSG00000044117) #7	Marf1 (ENSMUSG00000060657) #8	Nde1 (ENSMUSG00000022678) #9	Myh11 (ENSMUSG00000018830) #10	Cep20 (ENSMUSG00000022677) #11	Abcc1 (ENSMUSG00000023088) #12	Snai2 (ENSMUSG00000022676) #14	Efcab1 (ENSMUSG00000068617) #15	Ube2v2 (ENSMUSG00000022674) #16	Mcm4 (ENSMUSG00000022673) #17	Prkdc (ENSMUSG00000022672) #18	Mzt2 (ENSMUSG00000022671) #19	Cebpd (ENSMUSG00000071637)	Spidr (ENSMUSG00000041974) #20	Pkp2 (ENSMUSG00000041957) #21	Yars2 (ENSMUSG00000022792) #22	Dnm1l (ENSMUSG00000022789) #23	Fgd4 (ENSMUSG00000022788) #24	Or7a40 (ENSMUSG00000048101) #25	Spag6l (ENSMUSG00000022783) #26	Igll1 (ENSMUSG00000075370) #27	Vpreb1a (ENSMUSG00000059305) #29	Top3b (ENSMUSG00000022779) #30	Ppm1f (ENSMUSG00000026181) #31	Mapk1 (ENSMUSG00000063358) #32	Ypel1 (ENSMUSG00000022773) #33	Ppil2 (ENSMUSG00000022771) #34	2610318N02Rik (ENSMUSG00000049916) #35	Sdf2l1 (ENSMUSG00000022769) #36	Ccdc116 (ENSMUSG00000022768) #37	Ydjc (ENSMUSG00000041774)
Mus_C	ANCESTRAL SPECIES	12	ENSGT00390000000111.b.b #9	ENSGT00940000155421.b #10	ENSGT00390000007773 #11	ENSGT00940000160271 #12	ENSGT00940000161777.a.b #13	ENSGT00940000168647	ENSGT00940000154511.b #14	ENSGT00940000159968 #15	ENSGT00740000115534.a.b.f.a.a #16	ENSGT01050000244824.A #17	ENSGT00940000155633.D #18	ENSGT00390000014845 #19	ENSGT00940000163032	ENSGT00390000014654 #20	ENSGT00940000158677 #21	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #26	ENSGT00940000164874 #27	ENSGT00940000161017.h #28	ENSGT00940000161017.g.a #29	ENSGT00940000161017.g.b #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453 #33	ENSGT00940000153189.A #34	ENSGT00390000004807 #35	ENSGT00940000160018 #36
Steppe mouse	MODERN SPECIES	3260						Ube2v2 (ENSMSIG00000016214) #16	Mcm4 (ENSMSIG00000016247) #17	Prkdc (ENSMSIG00000016274) #18	ENSMSIG00000016641	Mzt2 (ENSMSIG00000016648) #19	Cebpd (ENSMSIG00000016699)	Spidr (ENSMSIG00000016705) #20	ENSMSIG00000016750	Pkp2 (ENSMSIG00000016758) #21	ENSMSIG00000016782	Yars2 (ENSMSIG00000016791) #22	Dnm1l (ENSMSIG00000016817) #23	Fgd4 (ENSMSIG00000017354) #24	Or7a40 (ENSMSIG00000017428) #25	ENSMSIG00000017439	Spag6l (ENSMSIG00000017457) #26	Igll1 (ENSMSIG00000017520) #27	Vpreb1a (ENSMSIG00000017534) #29	Top3b (ENSMSIG00000017556) #30	Ppm1f (ENSMSIG00000017667) #31	Mapk1 (ENSMSIG00000017684) #32	Ppil2 (ENSMSIG00000017786) #34	ENSMSIG00000017910 #35	Sdf2l1 (ENSMSIG00000017965) #36	ENSMSIG00000017983	Ccdc116 (ENSMSIG00000017988) #37
spretus	MODERN SPECIES	7	Bmerb1 (MGP_SPRETEiJ_G0021371) #7	Marf1 (MGP_SPRETEiJ_G0021372) #8	Nde1 (MGP_SPRETEiJ_G0021373) #9	Myh11 (MGP_SPRETEiJ_G0021374) #10	Cep20 (MGP_SPRETEiJ_G0021375) #11	Abcc1 (MGP_SPRETEiJ_G0021376) #12	MGP_SPRETEiJ_G0021377 #13	MGP_SPRETEiJ_G0021378	Snai2 (MGP_SPRETEiJ_G0021379) #14	Efcab1 (MGP_SPRETEiJ_G0021380) #15	Mcm4 (MGP_SPRETEiJ_G0021381) #17	Prkdc (MGP_SPRETEiJ_G0021382) #18	Mzt2 (MGP_SPRETEiJ_G0021383) #19	Spidr (MGP_SPRETEiJ_G0021384) #20	Pkp2 (MGP_SPRETEiJ_G0021385) #21	Yars2 (MGP_SPRETEiJ_G0021386) #22	Dnm1l (MGP_SPRETEiJ_G0021387) #23	Fgd4 (MGP_SPRETEiJ_G0021388) #24	Or7a40 (MGP_SPRETEiJ_G0021389) #25	Spag6l (MGP_SPRETEiJ_G0021390) #26	Igll1 (MGP_SPRETEiJ_G0021391) #27	MGP_SPRETEiJ_G0021392 #28	Vpreb1b (MGP_SPRETEiJ_G0021393) #29	Top3b (MGP_SPRETEiJ_G0021394) #30	Ppm1f (MGP_SPRETEiJ_G0021395) #31	Mapk1 (MGP_SPRETEiJ_G0021396) #32	MGP_SPRETEiJ_G0021397 #33	Ppil2 (MGP_SPRETEiJ_G0021398) #34	2610318N02Rik (MGP_SPRETEiJ_G0021399) #35	Sdf2l1 (MGP_SPRETEiJ_G0021400) #36	Ccdc116 (MGP_SPRETEiJ_G0021401) #37
Ryukyu mouse	MODERN SPECIES	7	Marf1 (MGP_CAROLIEiJ_G0020476) #8	Nde1 (MGP_CAROLIEiJ_G0020477) #9	Myh11 (MGP_CAROLIEiJ_G0020478) #10	Cep20 (MGP_CAROLIEiJ_G0020479) #11	Abcc1 (MGP_CAROLIEiJ_G0020480) #12	MGP_CAROLIEiJ_G0020481 #13	MGP_CAROLIEiJ_G0020482	Snai2 (MGP_CAROLIEiJ_G0020483) #14	Efcab1 (MGP_CAROLIEiJ_G0020484) #15	Ube2v2 (MGP_CAROLIEiJ_G0020485) #16	Mcm4 (MGP_CAROLIEiJ_G0020486) #17	Prkdc (MGP_CAROLIEiJ_G0020487) #18	Mzt2 (MGP_CAROLIEiJ_G0020488) #19	Spidr (MGP_CAROLIEiJ_G0020489) #20	Pkp2 (MGP_CAROLIEiJ_G0020490) #21	Yars2 (MGP_CAROLIEiJ_G0020491) #22	Dnm1l (MGP_CAROLIEiJ_G0020492) #23	Fgd4 (MGP_CAROLIEiJ_G0020493) #24	Or7a40 (MGP_CAROLIEiJ_G0020494) #25	Spag6l (MGP_CAROLIEiJ_G0020495) #26	Igll1 (MGP_CAROLIEiJ_G0020496) #27	MGP_CAROLIEiJ_G0020497 #28	MGP_CAROLIEiJ_G0020498 #28	Top3b (MGP_CAROLIEiJ_G0020499) #30	Ppm1f (MGP_CAROLIEiJ_G0020500) #31	Mapk1 (MGP_CAROLIEiJ_G0020501) #32	MGP_CAROLIEiJ_G0020502 #33	Ppil2 (MGP_CAROLIEiJ_G0020503) #34	2610318N02Rik (MGP_CAROLIEiJ_G0020504) #35	Sdf2l1 (MGP_CAROLIEiJ_G0020505) #36	MGP_CAROLIEiJ_G0020506 #37
Rat	MODERN SPECIES	2							Snai2 (ENSRNOG00000047699)	Clxn (ENSRNOG00000050091) #15	Ube2v2 (ENSRNOG00000001829) ##16	Mcm4 (ENSRNOG00000001833) #17	Prkdc (ENSRNOG00000025028) #18	Mzt2b (ENSRNOG00000066842) #19	Spidr (ENSRNOG00000037851) #20	Cebpd (ENSRNOG00000050869)	AABR07034767.1 (ENSRNOG00000001825) #21	Yars2 (ENSRNOG00000025252) #22	Dnm1l (ENSRNOG00000001813) #23	Fgd4 (ENSRNOG00000059491) #24	LOC100912028 (ENSRNOG00000070534)	LOC102546862 (ENSRNOG00000055545)	Spag6l (ENSRNOG00000025787) #26	Igll1 (ENSRNOG00000025990) #27	Vpreb1 (ENSRNOG00000052348) #29	Top3b (ENSRNOG00000001845) #30	Ppm1f (ENSRNOG00000037909) #31	Mapk1 (ENSRNOG00000001849) #32	Ppil2 (ENSRNOG00000026900) #34	RGD1308065 (ENSRNOG00000026918) #35	Sdf2l1 (ENSRNOG00000001859) #36	Ccdc116 (ENSRNOG00000001860) #37	Ydjc (ENSRNOG00000001861)