Muroidea_A	ANCESTRAL SPECIES	17								ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.b.d ##12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00390000014845 #16	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017 #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35	ENSGT00390000002259 #37	ENSGT00390000002575
Murinae	ANCESTRAL SPECIES	13							ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.a #12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00390000014845 #16	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017 #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35	ENSGT00390000002259 #37	ENSGT00390000002575	ENSGT00940000153654
Mus	ANCESTRAL SPECIES	13	ENSGT00390000002393	ENSGT00390000000111.b.b	ENSGT00940000155421.b	ENSGT00390000007773	ENSGT00940000160271	ENSGT00940000161777.a.b	ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.a #12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00390000014845 #16	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017.h ##29	ENSGT00940000161017.g #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35	ENSGT00390000002259 #37
Mus_A	ANCESTRAL SPECIES	18	ENSGT00390000000111.b.b	ENSGT00940000155421.b	ENSGT00390000007773	ENSGT00940000160271	ENSGT00940000161777.a.b	ENSGT00940000168647	ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.a #12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00390000014845 #16	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017.h ##29	ENSGT00940000161017.g #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35	ENSGT00390000002259 #37
Mus_B	ANCESTRAL SPECIES	18	ENSGT00390000000111.b.b	ENSGT00940000155421.b	ENSGT00390000007773	ENSGT00940000160271	ENSGT00940000161777.a.b	ENSGT00940000168647	ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.a #12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00390000014845 #16	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017.h ##29	ENSGT00940000161017.g.a ##29	ENSGT00940000161017.g.b #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35
Mus_C	ANCESTRAL SPECIES	12	ENSGT00390000000111.b.b	ENSGT00940000155421.b	ENSGT00390000007773	ENSGT00940000160271	ENSGT00940000161777.a.b	ENSGT00940000168647	ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.a #12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00390000014845 #16	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00940000153523.a #25	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017.h ##29	ENSGT00940000161017.g.a ##29	ENSGT00940000161017.g.b #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35
Steppe mouse	MODERN SPECIES	3260						Ube2v2 (ENSMSIG00000016214) #12	Mcm4 (ENSMSIG00000016247) #13	Prkdc (ENSMSIG00000016274) #14	ENSMSIG00000016641 #15	Mzt2 (ENSMSIG00000016648) #16	Cebpd (ENSMSIG00000016699) #17	Spidr (ENSMSIG00000016705) #18	ENSMSIG00000016750 #19	Pkp2 (ENSMSIG00000016758) #20	ENSMSIG00000016782 #21	Yars2 (ENSMSIG00000016791) #22	Dnm1l (ENSMSIG00000016817) #23	Fgd4 (ENSMSIG00000017354) #24	Or7a40 (ENSMSIG00000017428) #25	ENSMSIG00000017439 #26	Spag6l (ENSMSIG00000017457) #27	Igll1 (ENSMSIG00000017520) #28	Vpreb1a (ENSMSIG00000017534) #29	Top3b (ENSMSIG00000017556) #30	Ppm1f (ENSMSIG00000017667) #31	Mapk1 (ENSMSIG00000017684) #32	Ppil2 (ENSMSIG00000017786) #33	ENSMSIG00000017910 #34	Sdf2l1 (ENSMSIG00000017965) #35	ENSMSIG00000017983 #36	Ccdc116 (ENSMSIG00000017988) #37
spretus	MODERN SPECIES	7	Bmerb1 (MGP_SPRETEiJ_G0021371)	Marf1 (MGP_SPRETEiJ_G0021372)	Nde1 (MGP_SPRETEiJ_G0021373)	Myh11 (MGP_SPRETEiJ_G0021374)	Cep20 (MGP_SPRETEiJ_G0021375)	Abcc1 (MGP_SPRETEiJ_G0021376)	MGP_SPRETEiJ_G0021377	MGP_SPRETEiJ_G0021378	Snai2 (MGP_SPRETEiJ_G0021379)	Efcab1 (MGP_SPRETEiJ_G0021380)	Mcm4 (MGP_SPRETEiJ_G0021381) #13	Prkdc (MGP_SPRETEiJ_G0021382) #14	Mzt2 (MGP_SPRETEiJ_G0021383) #16	Spidr (MGP_SPRETEiJ_G0021384) #18	Pkp2 (MGP_SPRETEiJ_G0021385) #20	Yars2 (MGP_SPRETEiJ_G0021386) #22	Dnm1l (MGP_SPRETEiJ_G0021387) #23	Fgd4 (MGP_SPRETEiJ_G0021388) #24	Or7a40 (MGP_SPRETEiJ_G0021389) #25	Spag6l (MGP_SPRETEiJ_G0021390) #27	Igll1 (MGP_SPRETEiJ_G0021391) #28	MGP_SPRETEiJ_G0021392 ##29	Vpreb1b (MGP_SPRETEiJ_G0021393) ##29	Top3b (MGP_SPRETEiJ_G0021394) #30	Ppm1f (MGP_SPRETEiJ_G0021395) #31	Mapk1 (MGP_SPRETEiJ_G0021396) #32	MGP_SPRETEiJ_G0021397	Ppil2 (MGP_SPRETEiJ_G0021398) #33	2610318N02Rik (MGP_SPRETEiJ_G0021399) #34	Sdf2l1 (MGP_SPRETEiJ_G0021400) #35	Ccdc116 (MGP_SPRETEiJ_G0021401) #37
Mouse	MODERN SPECIES	7	Bmerb1 (ENSMUSG00000044117)	Marf1 (ENSMUSG00000060657)	Nde1 (ENSMUSG00000022678)	Myh11 (ENSMUSG00000018830)	Cep20 (ENSMUSG00000022677)	Abcc1 (ENSMUSG00000023088)	Snai2 (ENSMUSG00000022676)	Efcab1 (ENSMUSG00000068617)	Ube2v2 (ENSMUSG00000022674) #12	Mcm4 (ENSMUSG00000022673) #13	Prkdc (ENSMUSG00000022672) #14	Mzt2 (ENSMUSG00000022671) #16	Cebpd (ENSMUSG00000071637) #17	Spidr (ENSMUSG00000041974) #18	Pkp2 (ENSMUSG00000041957) #20	Yars2 (ENSMUSG00000022792) #22	Dnm1l (ENSMUSG00000022789) #23	Fgd4 (ENSMUSG00000022788) #24	Or7a40 (ENSMUSG00000048101) #25	Spag6l (ENSMUSG00000022783) #27	Igll1 (ENSMUSG00000075370) #28	Vpreb1a (ENSMUSG00000059305) #29	Top3b (ENSMUSG00000022779) #30	Ppm1f (ENSMUSG00000026181) #31	Mapk1 (ENSMUSG00000063358) #32	Ypel1 (ENSMUSG00000022773)	Ppil2 (ENSMUSG00000022771) #33	2610318N02Rik (ENSMUSG00000049916) #34	Sdf2l1 (ENSMUSG00000022769) #35	Ccdc116 (ENSMUSG00000022768) #37	Ydjc (ENSMUSG00000041774)
Ryukyu mouse	MODERN SPECIES	7	Marf1 (MGP_CAROLIEiJ_G0020476)	Nde1 (MGP_CAROLIEiJ_G0020477)	Myh11 (MGP_CAROLIEiJ_G0020478)	Cep20 (MGP_CAROLIEiJ_G0020479)	Abcc1 (MGP_CAROLIEiJ_G0020480)	MGP_CAROLIEiJ_G0020481	MGP_CAROLIEiJ_G0020482	Snai2 (MGP_CAROLIEiJ_G0020483)	Efcab1 (MGP_CAROLIEiJ_G0020484)	Ube2v2 (MGP_CAROLIEiJ_G0020485) #12	Mcm4 (MGP_CAROLIEiJ_G0020486) #13	Prkdc (MGP_CAROLIEiJ_G0020487) #14	Mzt2 (MGP_CAROLIEiJ_G0020488) #16	Spidr (MGP_CAROLIEiJ_G0020489) #18	Pkp2 (MGP_CAROLIEiJ_G0020490) #20	Yars2 (MGP_CAROLIEiJ_G0020491) #22	Dnm1l (MGP_CAROLIEiJ_G0020492) #23	Fgd4 (MGP_CAROLIEiJ_G0020493) #24	Or7a40 (MGP_CAROLIEiJ_G0020494) #25	Spag6l (MGP_CAROLIEiJ_G0020495) #27	Igll1 (MGP_CAROLIEiJ_G0020496) #28	MGP_CAROLIEiJ_G0020497 ##29	MGP_CAROLIEiJ_G0020498 ##29	Top3b (MGP_CAROLIEiJ_G0020499) #30	Ppm1f (MGP_CAROLIEiJ_G0020500) #31	Mapk1 (MGP_CAROLIEiJ_G0020501) #32	MGP_CAROLIEiJ_G0020502	Ppil2 (MGP_CAROLIEiJ_G0020503) #33	2610318N02Rik (MGP_CAROLIEiJ_G0020504) #34	Sdf2l1 (MGP_CAROLIEiJ_G0020505) #35	MGP_CAROLIEiJ_G0020506 #37
Shrew mouse	MODERN SPECIES	3	Bmerb1 (MGP_PahariEiJ_G0016181)	Marf1 (MGP_PahariEiJ_G0016182)	Nde1 (MGP_PahariEiJ_G0016183)	Myh11 (MGP_PahariEiJ_G0016184)	Cep20 (MGP_PahariEiJ_G0016185)	Abcc1 (MGP_PahariEiJ_G0016186)	MGP_PahariEiJ_G0016187	Snai2 (MGP_PahariEiJ_G0016188)	Efcab1 (MGP_PahariEiJ_G0016189)	Ube2v2 (MGP_PahariEiJ_G0016190) #12	Mcm4 (MGP_PahariEiJ_G0016191) #13	Prkdc (MGP_PahariEiJ_G0016192) #14	Mzt2 (MGP_PahariEiJ_G0016193) #16	Spidr (MGP_PahariEiJ_G0016194) #18	Pkp2 (MGP_PahariEiJ_G0016195) #20	Yars2 (MGP_PahariEiJ_G0016196) #22	Dnm1l (MGP_PahariEiJ_G0016197) #23	Fgd4 (MGP_PahariEiJ_G0016198) #24	Or7a40 (MGP_PahariEiJ_G0016199) #25	Spag6l (MGP_PahariEiJ_G0016200) #27	Igll1 (MGP_PahariEiJ_G0016201) #28	MGP_PahariEiJ_G0016202 ##29	MGP_PahariEiJ_G0016203 #29	Top3b (MGP_PahariEiJ_G0016204) #30	Ppm1f (MGP_PahariEiJ_G0016205) #31	Mapk1 (MGP_PahariEiJ_G0016206) #32	MGP_PahariEiJ_G0016207	Ppil2 (MGP_PahariEiJ_G0016208) #33	2610318N02Rik (MGP_PahariEiJ_G0016209) #34	Sdf2l1 (MGP_PahariEiJ_G0016210) #35	Ccdc116 (MGP_PahariEiJ_G0016211) #37
Rat	MODERN SPECIES	2							Snai2 (ENSRNOG00000047699)	Clxn (ENSRNOG00000050091)	Ube2v2 (ENSRNOG00000001829) ##12	Mcm4 (ENSRNOG00000001833) #13	Prkdc (ENSRNOG00000025028) #14	Mzt2b (ENSRNOG00000066842) #16	Spidr (ENSRNOG00000037851) #18	Cebpd (ENSRNOG00000050869) #17	AABR07034767.1 (ENSRNOG00000001825) #20	Yars2 (ENSRNOG00000025252) #22	Dnm1l (ENSRNOG00000001813) #23	Fgd4 (ENSRNOG00000059491) #24	LOC100912028 (ENSRNOG00000070534)	LOC102546862 (ENSRNOG00000055545) #26	Spag6l (ENSRNOG00000025787) #27	Igll1 (ENSRNOG00000025990) #28	Vpreb1 (ENSRNOG00000052348) #29	Top3b (ENSRNOG00000001845) #30	Ppm1f (ENSRNOG00000037909) #31	Mapk1 (ENSRNOG00000001849) #32	Ppil2 (ENSRNOG00000026900) #33	RGD1308065 (ENSRNOG00000026918) #34	Sdf2l1 (ENSRNOG00000001859) #35	Ccdc116 (ENSRNOG00000001860) #37	Ydjc (ENSRNOG00000001861)
Cricetidae	ANCESTRAL SPECIES	16								ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.b.d ##12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00390000014845 #16	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017 #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35	ENSGT00390000002259 #37	ENSGT00390000002575
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000157513	ENSGT00940000159039	ENSGT00940000162800	ENSGT00950000182951.A.a.a	ENSGT00940000153505.a.a.c.a.a.a.a.a.a	ENSGT00940000153505.a.a.c.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.b	ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.b.d ##12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00390000014845 #16
Golden Hamster	MODERN SPECIES	690	Cog6 (ENSMAUG00000000435)	Foxo1 (ENSMAUG00000000234)	Maml3 (ENSMAUG00000001409)	Mgst2 (ENSMAUG00000009690)	Setd7 (ENSMAUG00000011555)	Rab33b (ENSMAUG00000014030)	ENSMAUG00000016687	Ndufc1 (ENSMAUG00000017283)	Mgarp (ENSMAUG00000017626)	ENSMAUG00000007960	ENSMAUG00000010499	Noct (ENSMAUG00000013688)	Slc7a11 (ENSMAUG00000015486)	Pcdh18 (ENSMAUG00000008607)	Pkp2 (ENSMAUG00000010450) #20	Yars2 (ENSMAUG00000012334) #22	Dnm1l (ENSMAUG00000010409) #23	Fgd4 (ENSMAUG00000009523) #24	Mzt2 (ENSMAUG00000011034) #16	Hira (ENSMAUG00000013816)	Mrpl40 (ENSMAUG00000015350)	2510002D24Rik (ENSMAUG00000006315)	Ufd1 (ENSMAUG00000011444)	Cdc45 (ENSMAUG00000014100)	Cldn5 (ENSMAUG00000017811)	Septin5 (ENSMAUG00000014786)	Gp1bb (ENSMAUG00000016778)	Tbx1 (ENSMAUG00000019560)	Gnb1l (ENSMAUG00000000218)	ENSMAUG00000016392	Txnrd2 (ENSMAUG00000001013)
Chinese hamster chok1gshd	MODERN SPECIES	130	Fam20c (ENSCGRG00001009787)	ENSCGRG00001014517	Zfp68 (ENSCGRG00001024349)	ENSCGRG00001011134	ENSCGRG00001017912	ENSCGRG00001018731	Zfp157 (ENSCGRG00001012834)	Snai2 (ENSCGRG00001013674)	Efcab1 (ENSCGRG00001015295)	ENSCGRG00001014373 ##12	Mcm4 (ENSCGRG00001019609) #13	Prkdc (ENSCGRG00001003779) #14	Spidr (ENSCGRG00001017594) #18	Cebpd (ENSCGRG00001010010) #17	Pkp2 (ENSCGRG00001013847) #20	Yars2 (ENSCGRG00001019281) #22	Dnm1l (ENSCGRG00001021788) #23	Fgd4 (ENSCGRG00001015663) #24	Mzt2 (ENSCGRG00001024758) #16	Or7a40 (ENSCGRG00001005149) #25
Cricetidae_B	ANCESTRAL SPECIES	13								ENSGT00940000154511.b	ENSGT00940000159968	ENSGT00740000115534.a.b.f.a.b.d ##12	ENSGT01050000244824.A #13	ENSGT00940000155633.D #14	ENSGT00940000163032 #17	ENSGT00390000014654 #18	ENSGT00940000158677 #20	ENSGT00390000013709.b #22	ENSGT00940000155504 #23	ENSGT00940000155765 #24	ENSGT00390000014845 #16	ENSGT00900000141099.c #27	ENSGT00940000164874 #28	ENSGT00940000161017 #29	ENSGT00940000156516 #30	ENSGT00940000158884 #31	ENSGT00940000156771 #32	ENSGT00940000161453	ENSGT00940000153189.A #33	ENSGT00390000004807 #34	ENSGT00940000160018 #35	ENSGT00390000002259 #37	ENSGT00390000002575
Northern American deer mouse	MODERN SPECIES	3								Snai2 (ENSPEMG00000011739)	Efcab1 (ENSPEMG00000010596)	ENSPEMG00000013862 ##12	Mcm4 (ENSPEMG00000016455) #13	Prkdc (ENSPEMG00000006101) #14	Cebpd (ENSPEMG00000006910) #17	Spidr (ENSPEMG00000007140) #18	Pkp2 (ENSPEMG00000011549) #20	Yars2 (ENSPEMG00000007655) #22	Dnm1l (ENSPEMG00000000455) #23	Fgd4 (ENSPEMG00000007078) #24	ENSPEMG00000029086	Mzt2 (ENSPEMG00000001020) #16	ENSPEMG00000025802	Or7a40 (ENSPEMG00000000794) #25	Spag6l (ENSPEMG00000026249) #27	Igll1 (ENSPEMG00000028783) #28	ENSPEMG00000014521 #29	Top3b (ENSPEMG00000007198) #30	Ppm1f (ENSPEMG00000031295) #31	ENSPEMG00000030431	Mapk1 (ENSPEMG00000013158) #32	Ypel1 (ENSPEMG00000026407)	Ppil2 (ENSPEMG00000007492) #33
Prairie vole	MODERN SPECIES	160								Snai2 (ENSMOCG00000006622)	Efcab1 (ENSMOCG00000001248)	ENSMOCG00000002368 ##12	ENSMOCG00000017342 #13	Prkdc (ENSMOCG00000014871) #14	Cebpd (ENSMOCG00000003699) #17	Spidr (ENSMOCG00000016918) #18	Pkp2 (ENSMOCG00000001368) #20	Yars2 (ENSMOCG00000011433) #22	Dnm1l (ENSMOCG00000006970) #23	Fgd4 (ENSMOCG00000005834) #24	Mzt2 (ENSMOCG00000014389) #16	ENSMOCG00000015664	ENSMOCG00000010843