Rodentia_A ANCESTRAL SPECIES 4 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ##10 ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ##10 ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Naked mole-rat female MODERN SPECIES 8 ABCD2 (ENSHGLG00000012569) #7 ENSHGLG00000018960 #8 ENSHGLG00000044300 #9 ENSHGLG00000016118 #10 ENSHGLG00000049034 #11 ENSHGLG00000006477 #12 ENSHGLG00000007513 #13 ENSHGLG00000020628 #14 ENSHGLG00000005157 #15 ALG10 (ENSHGLG00000042948) #16 ENSHGLG00000010318 #17 ENSHGLG00000004697 #18 ENSHGLG00000005218 #19 ENSHGLG00000036554 #20 PKP2 (ENSHGLG00000008295) #21 YARS2 (ENSHGLG00000009938) #22 DNM1L (ENSHGLG00000018513) #23 ENSHGLG00000034994 #24 FGD4 (ENSHGLG00000010358) #25 ENSHGLG00000014911 #26 ENSHGLG00000033197 #27 ENSHGLG00000039155 #28 ENSHGLG00000036563 #29 ENSHGLG00000044149 #30 ENSHGLG00000033198 #31 ENSHGLG00000044038 #32 ENSHGLG00000040624 #33 ENSHGLG00000044525 #34 ENSHGLG00000035643 #35 ENSHGLG00000044475 #36 ENSHGLG00000041680 #37 Hystricomorpha_a ANCESTRAL SPECIES 76 ENSGT00940000158267 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ##10 ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Hystricomorpha_b ANCESTRAL SPECIES 102 ENSGT00940000158267 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ##10 ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Long-tailed chinchilla MODERN SPECIES 212 LRRK2 (ENSCLAG00000000858) SLC2A13 (ENSCLAG00000000454) C12orf40 (ENSCLAG00000000532) ABCD2 (ENSCLAG00000000619) #7 KIF21A (ENSCLAG00000001397) #12 ENSCLAG00000000855 CPNE8 (ENSCLAG00000000899) #15 ENSCLAG00000000434 ENSCLAG00000000451 #16 SYT10 (ENSCLAG00000000534) #19 PKP2 (ENSCLAG00000000587) #21 YARS2 (ENSCLAG00000002000) #22 DNM1L (ENSCLAG00000002548) #23 FGD4 (ENSCLAG00000001753) #25 BICD1 (ENSCLAG00000002981) #26 ENSCLAG00000003760 #30 DENND5B (ENSCLAG00000004154) SINHCAF (ENSCLAG00000001263) CAPRIN2 (ENSCLAG00000001513) ##10 IPO8 (ENSCLAG00000002557) ENSCLAG00000000571 TMTC1 (ENSCLAG00000000748) ERGIC2 (ENSCLAG00000001082) FAR2 (ENSCLAG00000000959) CCDC91 (ENSCLAG00000000884) PTHLH (ENSCLAG00000001423) KLHL42 (ENSCLAG00000001746) Degu MODERN SPECIES 88 ENSODEG00000019048 ENSODEG00000005890 PKP2 (ENSODEG00000004908) #21 YARS2 (ENSODEG00000006403) #22 DNM1L (ENSODEG00000004675) #23 ENSODEG00000019041 FGD4 (ENSODEG00000004678) #25 BICD1 (ENSODEG00000004640) #26 ENSODEG00000005005 ##26 ENSODEG00000019136 ENSODEG00000019216 ENSODEG00000019221 ENSODEG00000005428 AMN1 (ENSODEG00000005175) #36 DENND5B (ENSODEG00000004914) ENSODEG00000005420 ENSODEG00000005301 CAPRIN2 (ENSODEG00000005454) ##10 ENSODEG00000004763 Guinea pig MODERN SPECIES 54 LRRK2 (ENSCPOG00000007935) SLC2A13 (ENSCPOG00000010774) ABCD2 (ENSCPOG00000010205) #7 KIF21A (ENSCPOG00000010726) #12 CPNE8 (ENSCPOG00000008877) #15 ENSCPOG00000040138 #16 SYT10 (ENSCPOG00000006918) #19 PKP2 (ENSCPOG00000012340) #21 YARS2 (ENSCPOG00000015276) #22 DNM1L (ENSCPOG00000015273) #23 FGD4 (ENSCPOG00000015271) #25 BICD1 (ENSCPOG00000001551) #26 ENSCPOG00000032610 #30 ENSCPOG00000027414 ENSCPOG00000038662 AMN1 (ENSCPOG00000032967) #36 ENSCPOG00000008943 DENND5B (ENSCPOG00000005517) SINHCAF (ENSCPOG00000031402) CAPRIN2 (ENSCPOG00000006625) ##10 IPO8 (ENSCPOG00000010365) TMTC1 (ENSCPOG00000014889) ERGIC2 (ENSCPOG00000015668) FAR2 (ENSCPOG00000007356) Sciuridae ANCESTRAL SPECIES 15 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000164528 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ##10 ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 Marmotini ANCESTRAL SPECIES 19 ENSGT00390000016228 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ##10 ENSGT00940000158848 ENSGT00940000158027 ENSGT01100000264395 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 Marmotini_b ANCESTRAL SPECIES 11 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b #7 ENSGT00940000155323.a #12 ENSGT00940000159679 #15 ENSGT00390000012906 #16 ENSGT00940000158899 #19 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #25 ENSGT00940000154471.a.b.a.b #26 ENSGT00390000018491 #30 ENSGT00730000111305 #36 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c.lc.b ENSGT00940000153438.b ##10 ENSGT00940000158848 Squirrel MODERN SPECIES 207 CNTN1 (ENSSTOG00000015991) LRRK2 (ENSSTOG00000000527) SLC2A13 (ENSSTOG00000012574) ABCD2 (ENSSTOG00000012764) #7 KIF21A (ENSSTOG00000011688) #12 CPNE8 (ENSSTOG00000005472) #15 ENSSTOG00000025399 #16 SYT10 (ENSSTOG00000022740) #19 PKP2 (ENSSTOG00000024732) #21 YARS2 (ENSSTOG00000011917) #22 DNM1L (ENSSTOG00000011898) #23 FGD4 (ENSSTOG00000012543) #25 BICD1 (ENSSTOG00000004236) #26 ENSSTOG00000032422 #30 AMN1 (ENSSTOG00000008790) #36 ETFBKMT (ENSSTOG00000026094) DENND5B (ENSSTOG00000007411) ENSSTOG00000007097 CAPRIN2 (ENSSTOG00000004672) ##10 ENSSTOG00000015509 Arctic ground squirrel MODERN SPECIES 534 PKP2 (ENSUPAG00010013752) #21 YARS2 (ENSUPAG00010013765) #22 DNM1L (ENSUPAG00010000052) #23 FGD4 (ENSUPAG00010000374) #25 BICD1 (ENSUPAG00010000427) #26 RESF1 (ENSUPAG00010000541) #30 ENSUPAG00010000561 Alpin marmot MODERN SPECIES 34 ZCRB1 (ENSMMMG00000022545) YAF2 (ENSMMMG00000022539) GXYLT1 (ENSMMMG00000022532) ENSMMMG00000022530 PDZRN4 (ENSMMMG00000022528) CNTN1 (ENSMMMG00000022503) LRRK2 (ENSMMMG00000022478) SLC2A13 (ENSMMMG00000022471) ABCD2 (ENSMMMG00000022441) #7 KIF21A (ENSMMMG00000022225) #12 CPNE8 (ENSMMMG00000022203) #15 ENSMMMG00000022193 #16 SYT10 (ENSMMMG00000022187) #19 ENSMMMG00000022176 PKP2 (ENSMMMG00000022136) #21 YARS2 (ENSMMMG00000022130) #22 DNM1L (ENSMMMG00000022062) #23 FGD4 (ENSMMMG00000022046) #25 BICD1 (ENSMMMG00000022030) #26 ENSMMMG00000022009 ##28 ENSMMMG00000022008 #30 ENSMMMG00000021996 ##28 ENSMMMG00000021993 AMN1 (ENSMMMG00000021990) #36 ETFBKMT (ENSMMMG00000021988) DENND5B (ENSMMMG00000021976) SINHCAF (ENSMMMG00000021971) ENSMMMG00000021968 ##10 ENSMMMG00000021963 ##10 IPO8 (ENSMMMG00000021957) TMTC1 (ENSMMMG00000021829) Eurasian red squirrel MODERN SPECIES 14 GXYLT1 (ENSSVLG00005023725) ENSSVLG00005023701 ENSSVLG00005023688 PDZRN4 (ENSSVLG00005023595) CNTN1 (ENSSVLG00005023245) ENSSVLG00005023091 LRRK2 (ENSSVLG00005023045) SLC2A13 (ENSSVLG00005022999) C12orf40 (ENSSVLG00005022853) ABCD2 (ENSSVLG00005022770) #7 KIF21A (ENSSVLG00005021698) #12 CPNE8 (ENSSVLG00005021341) #15 ENSSVLG00005021292 #16 SYT10 (ENSSVLG00005021217) #19 PKP2 (ENSSVLG00005021133) #21 YARS2 (ENSSVLG00005021083) #22 DNM1L (ENSSVLG00005020928) #23 FGD4 (ENSSVLG00005020182) #25 ENSSVLG00005020064 BICD1 (ENSSVLG00005019995) #26 RESF1 (ENSSVLG00005019927) #30 ENSSVLG00005019891 ENSSVLG00005019844 AMN1 (ENSSVLG00005019716) #36 ETFBKMT (ENSSVLG00005019687) DENND5B (ENSSVLG00005019417) ENSSVLG00005019201 ENSSVLG00005019100 CAPRIN2 (ENSSVLG00005018545) ##10 IPO8 (ENSSVLG00005018259) ENSSVLG00005018216