Euarchontoglires_A ANCESTRAL SPECIES 5 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00940000163017 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 Glires ANCESTRAL SPECIES 4 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 Rodentia ANCESTRAL SPECIES 5 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 Rodentia_A ANCESTRAL SPECIES 4 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 ENSGT00940000160124 #37 Hystricomorpha_a ANCESTRAL SPECIES 76 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 ENSGT00940000160124 #37 Hystricomorpha_b ANCESTRAL SPECIES 102 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 ENSGT00940000160124 #37 Long-tailed chinchilla MODERN SPECIES 212 LRRK2 (ENSCLAG00000000858) #11 SLC2A13 (ENSCLAG00000000454) #12 C12orf40 (ENSCLAG00000000532) #13 ABCD2 (ENSCLAG00000000619) #14 KIF21A (ENSCLAG00000001397) #15 ENSCLAG00000000855 #16 CPNE8 (ENSCLAG00000000899) #17 ENSCLAG00000000434 #18 ENSCLAG00000000451 #19 SYT10 (ENSCLAG00000000534) #20 PKP2 (ENSCLAG00000000587) #21 YARS2 (ENSCLAG00000002000) #22 DNM1L (ENSCLAG00000002548) #23 FGD4 (ENSCLAG00000001753) #24 BICD1 (ENSCLAG00000002981) #25 ENSCLAG00000003760 #26 DENND5B (ENSCLAG00000004154) #27 SINHCAF (ENSCLAG00000001263) #28 CAPRIN2 (ENSCLAG00000001513) #29 IPO8 (ENSCLAG00000002557) #30 ENSCLAG00000000571 #31 TMTC1 (ENSCLAG00000000748) #32 ERGIC2 (ENSCLAG00000001082) #33 FAR2 (ENSCLAG00000000959) #34 CCDC91 (ENSCLAG00000000884) #35 PTHLH (ENSCLAG00000001423) #36 KLHL42 (ENSCLAG00000001746) #37 Degu MODERN SPECIES 88 ENSODEG00000019048 ENSODEG00000005890 PKP2 (ENSODEG00000004908) #21 YARS2 (ENSODEG00000006403) #22 DNM1L (ENSODEG00000004675) #23 ENSODEG00000019041 FGD4 (ENSODEG00000004678) #24 BICD1 (ENSODEG00000004640) #25 ENSODEG00000005005 ##25 ENSODEG00000019136 ENSODEG00000019216 ENSODEG00000019221 ENSODEG00000005428 AMN1 (ENSODEG00000005175) DENND5B (ENSODEG00000004914) #27 ENSODEG00000005420 ENSODEG00000005301 #28 CAPRIN2 (ENSODEG00000005454) #29 ENSODEG00000004763 #30 Guinea pig MODERN SPECIES 54 LRRK2 (ENSCPOG00000007935) #11 SLC2A13 (ENSCPOG00000010774) #12 ABCD2 (ENSCPOG00000010205) #14 KIF21A (ENSCPOG00000010726) #15 CPNE8 (ENSCPOG00000008877) #17 ENSCPOG00000040138 #19 SYT10 (ENSCPOG00000006918) #20 PKP2 (ENSCPOG00000012340) #21 YARS2 (ENSCPOG00000015276) #22 DNM1L (ENSCPOG00000015273) #23 FGD4 (ENSCPOG00000015271) #24 BICD1 (ENSCPOG00000001551) #25 ENSCPOG00000032610 #26 ENSCPOG00000027414 ENSCPOG00000038662 AMN1 (ENSCPOG00000032967) ENSCPOG00000008943 DENND5B (ENSCPOG00000005517) #27 SINHCAF (ENSCPOG00000031402) #28 CAPRIN2 (ENSCPOG00000006625) #29 IPO8 (ENSCPOG00000010365) #30 TMTC1 (ENSCPOG00000014889) #32 ERGIC2 (ENSCPOG00000015668) #33 FAR2 (ENSCPOG00000007356) #34 Naked mole-rat female MODERN SPECIES 8 ABCD2 (ENSHGLG00000012569) #14 ENSHGLG00000018960 ENSHGLG00000044300 ENSHGLG00000016118 ##29 ENSHGLG00000049034 ENSHGLG00000006477 #15 ENSHGLG00000007513 ENSHGLG00000020628 ENSHGLG00000005157 #17 ALG10 (ENSHGLG00000042948) #19 ENSHGLG00000010318 ENSHGLG00000004697 ENSHGLG00000005218 #20 ENSHGLG00000036554 PKP2 (ENSHGLG00000008295) #21 YARS2 (ENSHGLG00000009938) #22 DNM1L (ENSHGLG00000018513) #23 ENSHGLG00000034994 FGD4 (ENSHGLG00000010358) #24 ENSHGLG00000014911 #25 ENSHGLG00000033197 ENSHGLG00000039155 ENSHGLG00000036563 ENSHGLG00000044149 #26 ENSHGLG00000033198 ENSHGLG00000044038 ENSHGLG00000040624 ENSHGLG00000044525 ENSHGLG00000035643 ENSHGLG00000044475 ENSHGLG00000041680 Sciuridae ANCESTRAL SPECIES 15 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 Marmotini ANCESTRAL SPECIES 19 ENSGT00390000016228 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT01100000264395 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 Marmotini_b ANCESTRAL SPECIES 11 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 #11 ENSGT00910000146950 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c.lc.b #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 Squirrel MODERN SPECIES 207 CNTN1 (ENSSTOG00000015991) LRRK2 (ENSSTOG00000000527) #11 SLC2A13 (ENSSTOG00000012574) #12 ABCD2 (ENSSTOG00000012764) #14 KIF21A (ENSSTOG00000011688) #15 CPNE8 (ENSSTOG00000005472) #17 ENSSTOG00000025399 #19 SYT10 (ENSSTOG00000022740) #20 PKP2 (ENSSTOG00000024732) #21 YARS2 (ENSSTOG00000011917) #22 DNM1L (ENSSTOG00000011898) #23 FGD4 (ENSSTOG00000012543) #24 BICD1 (ENSSTOG00000004236) #25 ENSSTOG00000032422 #26 AMN1 (ENSSTOG00000008790) ETFBKMT (ENSSTOG00000026094) DENND5B (ENSSTOG00000007411) #27 ENSSTOG00000007097 #28 CAPRIN2 (ENSSTOG00000004672) #29 ENSSTOG00000015509 #30 Arctic ground squirrel MODERN SPECIES 534 PKP2 (ENSUPAG00010013752) #21 YARS2 (ENSUPAG00010013765) #22 DNM1L (ENSUPAG00010000052) #23 FGD4 (ENSUPAG00010000374) #24 BICD1 (ENSUPAG00010000427) #25 RESF1 (ENSUPAG00010000541) #26 ENSUPAG00010000561 Alpin marmot MODERN SPECIES 34 ZCRB1 (ENSMMMG00000022545) YAF2 (ENSMMMG00000022539) GXYLT1 (ENSMMMG00000022532) ENSMMMG00000022530 PDZRN4 (ENSMMMG00000022528) CNTN1 (ENSMMMG00000022503) LRRK2 (ENSMMMG00000022478) #11 SLC2A13 (ENSMMMG00000022471) #12 ABCD2 (ENSMMMG00000022441) #14 KIF21A (ENSMMMG00000022225) #15 CPNE8 (ENSMMMG00000022203) #17 ENSMMMG00000022193 #19 SYT10 (ENSMMMG00000022187) #20 ENSMMMG00000022176 PKP2 (ENSMMMG00000022136) #21 YARS2 (ENSMMMG00000022130) #22 DNM1L (ENSMMMG00000022062) #23 FGD4 (ENSMMMG00000022046) #24 BICD1 (ENSMMMG00000022030) #25 ENSMMMG00000022009 ENSMMMG00000022008 #26 ENSMMMG00000021996 ENSMMMG00000021993 AMN1 (ENSMMMG00000021990) ETFBKMT (ENSMMMG00000021988) DENND5B (ENSMMMG00000021976) #27 SINHCAF (ENSMMMG00000021971) #28 ENSMMMG00000021968 #29 ENSMMMG00000021963 #29 IPO8 (ENSMMMG00000021957) #30 TMTC1 (ENSMMMG00000021829) #32 Eurasian red squirrel MODERN SPECIES 14 GXYLT1 (ENSSVLG00005023725) ENSSVLG00005023701 ENSSVLG00005023688 PDZRN4 (ENSSVLG00005023595) CNTN1 (ENSSVLG00005023245) ENSSVLG00005023091 LRRK2 (ENSSVLG00005023045) #11 SLC2A13 (ENSSVLG00005022999) #12 C12orf40 (ENSSVLG00005022853) #13 ABCD2 (ENSSVLG00005022770) #14 KIF21A (ENSSVLG00005021698) #15 CPNE8 (ENSSVLG00005021341) #17 ENSSVLG00005021292 #19 SYT10 (ENSSVLG00005021217) #20 PKP2 (ENSSVLG00005021133) #21 YARS2 (ENSSVLG00005021083) #22 DNM1L (ENSSVLG00005020928) #23 FGD4 (ENSSVLG00005020182) #24 ENSSVLG00005020064 BICD1 (ENSSVLG00005019995) #25 RESF1 (ENSSVLG00005019927) #26 ENSSVLG00005019891 ENSSVLG00005019844 AMN1 (ENSSVLG00005019716) ETFBKMT (ENSSVLG00005019687) DENND5B (ENSSVLG00005019417) #27 ENSSVLG00005019201 ENSSVLG00005019100 #28 CAPRIN2 (ENSSVLG00005018545) #29 IPO8 (ENSSVLG00005018259) #30 ENSSVLG00005018216 Rodentia_B ANCESTRAL SPECIES 3 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00910000147839 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 Myomorpha ANCESTRAL SPECIES 2 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 Muroidea ANCESTRAL SPECIES 31 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000164528 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 Muroidea_A ANCESTRAL SPECIES 17 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b.d ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00390000014845 ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017 ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 ENSGT00390000002259 ENSGT00390000002575 Cricetidae ANCESTRAL SPECIES 16 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b.d ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00390000014845 ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017 ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 ENSGT00390000002259 ENSGT00390000002575 Cricetinae ANCESTRAL SPECIES 19 ENSGT00940000157513 ENSGT00940000159039 ENSGT00940000162800 ENSGT00950000182951.A.a.a ENSGT00940000153505.a.a.c.a.a.a.a.a.a ENSGT00940000153505.a.a.c.a.a.b ENSGT00940000153505.a.a.c.a.a.a.b.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b.d ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00390000014845 Golden Hamster MODERN SPECIES 690 Cog6 (ENSMAUG00000000435) Foxo1 (ENSMAUG00000000234) Maml3 (ENSMAUG00000001409) Mgst2 (ENSMAUG00000009690) Setd7 (ENSMAUG00000011555) Rab33b (ENSMAUG00000014030) ENSMAUG00000016687 Ndufc1 (ENSMAUG00000017283) Mgarp (ENSMAUG00000017626) ENSMAUG00000007960 ENSMAUG00000010499 Noct (ENSMAUG00000013688) Slc7a11 (ENSMAUG00000015486) Pcdh18 (ENSMAUG00000008607) Pkp2 (ENSMAUG00000010450) #21 Yars2 (ENSMAUG00000012334) #22 Dnm1l (ENSMAUG00000010409) #23 Fgd4 (ENSMAUG00000009523) #24 Mzt2 (ENSMAUG00000011034) Hira (ENSMAUG00000013816) Mrpl40 (ENSMAUG00000015350) 2510002D24Rik (ENSMAUG00000006315) Ufd1 (ENSMAUG00000011444) Cdc45 (ENSMAUG00000014100) Cldn5 (ENSMAUG00000017811) Septin5 (ENSMAUG00000014786) Gp1bb (ENSMAUG00000016778) Tbx1 (ENSMAUG00000019560) Gnb1l (ENSMAUG00000000218) ENSMAUG00000016392 Txnrd2 (ENSMAUG00000001013) Chinese hamster chok1gshd MODERN SPECIES 130 Fam20c (ENSCGRG00001009787) ENSCGRG00001014517 Zfp68 (ENSCGRG00001024349) ENSCGRG00001011134 ENSCGRG00001017912 ENSCGRG00001018731 Zfp157 (ENSCGRG00001012834) Snai2 (ENSCGRG00001013674) Efcab1 (ENSCGRG00001015295) ENSCGRG00001014373 Mcm4 (ENSCGRG00001019609) Prkdc (ENSCGRG00001003779) Spidr (ENSCGRG00001017594) Cebpd (ENSCGRG00001010010) Pkp2 (ENSCGRG00001013847) #21 Yars2 (ENSCGRG00001019281) #22 Dnm1l (ENSCGRG00001021788) #23 Fgd4 (ENSCGRG00001015663) #24 Mzt2 (ENSCGRG00001024758) Or7a40 (ENSCGRG00001005149) Cricetidae_B ANCESTRAL SPECIES 13 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b.d ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00390000014845 ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017 ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 ENSGT00390000002259 ENSGT00390000002575 Northern American deer mouse MODERN SPECIES 3 Snai2 (ENSPEMG00000011739) Efcab1 (ENSPEMG00000010596) ENSPEMG00000013862 Mcm4 (ENSPEMG00000016455) Prkdc (ENSPEMG00000006101) Cebpd (ENSPEMG00000006910) Spidr (ENSPEMG00000007140) Pkp2 (ENSPEMG00000011549) #21 Yars2 (ENSPEMG00000007655) #22 Dnm1l (ENSPEMG00000000455) #23 Fgd4 (ENSPEMG00000007078) #24 ENSPEMG00000029086 Mzt2 (ENSPEMG00000001020) ENSPEMG00000025802 Or7a40 (ENSPEMG00000000794) Spag6l (ENSPEMG00000026249) Igll1 (ENSPEMG00000028783) ENSPEMG00000014521 Top3b (ENSPEMG00000007198) Ppm1f (ENSPEMG00000031295) ENSPEMG00000030431 Mapk1 (ENSPEMG00000013158) Ypel1 (ENSPEMG00000026407) Ppil2 (ENSPEMG00000007492) Prairie vole MODERN SPECIES 160 Snai2 (ENSMOCG00000006622) Efcab1 (ENSMOCG00000001248) ENSMOCG00000002368 ENSMOCG00000017342 Prkdc (ENSMOCG00000014871) Cebpd (ENSMOCG00000003699) Spidr (ENSMOCG00000016918) Pkp2 (ENSMOCG00000001368) #21 Yars2 (ENSMOCG00000011433) #22 Dnm1l (ENSMOCG00000006970) #23 Fgd4 (ENSMOCG00000005834) #24 Mzt2 (ENSMOCG00000014389) ENSMOCG00000015664 ENSMOCG00000010843 Murinae ANCESTRAL SPECIES 13 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00390000014845 ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017 ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 ENSGT00390000002259 ENSGT00390000002575 ENSGT00940000153654 Mus ANCESTRAL SPECIES 13 ENSGT00390000002393 ENSGT00390000000111.b.b ENSGT00940000155421.b ENSGT00390000007773 ENSGT00940000160271 ENSGT00940000161777.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00390000014845 ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000153523.a ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017.h ENSGT00940000161017.g ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 ENSGT00390000002259 Mus_A ANCESTRAL SPECIES 18 ENSGT00390000000111.b.b ENSGT00940000155421.b ENSGT00390000007773 ENSGT00940000160271 ENSGT00940000161777.a.b ENSGT00940000168647 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00390000014845 ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000153523.a ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017.h ENSGT00940000161017.g ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 ENSGT00390000002259 Mus_B ANCESTRAL SPECIES 18 ENSGT00390000000111.b.b ENSGT00940000155421.b ENSGT00390000007773 ENSGT00940000160271 ENSGT00940000161777.a.b ENSGT00940000168647 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00390000014845 ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000153523.a ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017.h ENSGT00940000161017.g.a ENSGT00940000161017.g.b ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 Mouse MODERN SPECIES 7 Bmerb1 (ENSMUSG00000044117) Marf1 (ENSMUSG00000060657) Nde1 (ENSMUSG00000022678) Myh11 (ENSMUSG00000018830) Cep20 (ENSMUSG00000022677) Abcc1 (ENSMUSG00000023088) Snai2 (ENSMUSG00000022676) Efcab1 (ENSMUSG00000068617) Ube2v2 (ENSMUSG00000022674) Mcm4 (ENSMUSG00000022673) Prkdc (ENSMUSG00000022672) Mzt2 (ENSMUSG00000022671) Cebpd (ENSMUSG00000071637) Spidr (ENSMUSG00000041974) Pkp2 (ENSMUSG00000041957) #21 Yars2 (ENSMUSG00000022792) #22 Dnm1l (ENSMUSG00000022789) #23 Fgd4 (ENSMUSG00000022788) #24 Or7a40 (ENSMUSG00000048101) Spag6l (ENSMUSG00000022783) Igll1 (ENSMUSG00000075370) Vpreb1a (ENSMUSG00000059305) Top3b (ENSMUSG00000022779) Ppm1f (ENSMUSG00000026181) Mapk1 (ENSMUSG00000063358) Ypel1 (ENSMUSG00000022773) Ppil2 (ENSMUSG00000022771) 2610318N02Rik (ENSMUSG00000049916) Sdf2l1 (ENSMUSG00000022769) Ccdc116 (ENSMUSG00000022768) Ydjc (ENSMUSG00000041774) Mus_C ANCESTRAL SPECIES 12 ENSGT00390000000111.b.b ENSGT00940000155421.b ENSGT00390000007773 ENSGT00940000160271 ENSGT00940000161777.a.b ENSGT00940000168647 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a ENSGT01050000244824.A ENSGT00940000155633.D ENSGT00390000014845 ENSGT00940000163032 ENSGT00390000014654 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000153523.a ENSGT00900000141099.c ENSGT00940000164874 ENSGT00940000161017.h ENSGT00940000161017.g.a ENSGT00940000161017.g.b ENSGT00940000156516 ENSGT00940000158884 ENSGT00940000156771 ENSGT00940000161453 ENSGT00940000153189.A ENSGT00390000004807 ENSGT00940000160018 Steppe mouse MODERN SPECIES 3260 Ube2v2 (ENSMSIG00000016214) Mcm4 (ENSMSIG00000016247) Prkdc (ENSMSIG00000016274) ENSMSIG00000016641 Mzt2 (ENSMSIG00000016648) Cebpd (ENSMSIG00000016699) Spidr (ENSMSIG00000016705) ENSMSIG00000016750 Pkp2 (ENSMSIG00000016758) #21 ENSMSIG00000016782 Yars2 (ENSMSIG00000016791) #22 Dnm1l (ENSMSIG00000016817) #23 Fgd4 (ENSMSIG00000017354) #24 Or7a40 (ENSMSIG00000017428) ENSMSIG00000017439 Spag6l (ENSMSIG00000017457) Igll1 (ENSMSIG00000017520) Vpreb1a (ENSMSIG00000017534) Top3b (ENSMSIG00000017556) Ppm1f (ENSMSIG00000017667) Mapk1 (ENSMSIG00000017684) Ppil2 (ENSMSIG00000017786) ENSMSIG00000017910 Sdf2l1 (ENSMSIG00000017965) ENSMSIG00000017983 Ccdc116 (ENSMSIG00000017988) spretus MODERN SPECIES 7 Bmerb1 (MGP_SPRETEiJ_G0021371) Marf1 (MGP_SPRETEiJ_G0021372) Nde1 (MGP_SPRETEiJ_G0021373) Myh11 (MGP_SPRETEiJ_G0021374) Cep20 (MGP_SPRETEiJ_G0021375) Abcc1 (MGP_SPRETEiJ_G0021376) MGP_SPRETEiJ_G0021377 MGP_SPRETEiJ_G0021378 Snai2 (MGP_SPRETEiJ_G0021379) Efcab1 (MGP_SPRETEiJ_G0021380) Mcm4 (MGP_SPRETEiJ_G0021381) Prkdc (MGP_SPRETEiJ_G0021382) Mzt2 (MGP_SPRETEiJ_G0021383) Spidr (MGP_SPRETEiJ_G0021384) Pkp2 (MGP_SPRETEiJ_G0021385) #21 Yars2 (MGP_SPRETEiJ_G0021386) #22 Dnm1l (MGP_SPRETEiJ_G0021387) #23 Fgd4 (MGP_SPRETEiJ_G0021388) #24 Or7a40 (MGP_SPRETEiJ_G0021389) Spag6l (MGP_SPRETEiJ_G0021390) Igll1 (MGP_SPRETEiJ_G0021391) MGP_SPRETEiJ_G0021392 Vpreb1b (MGP_SPRETEiJ_G0021393) Top3b (MGP_SPRETEiJ_G0021394) Ppm1f (MGP_SPRETEiJ_G0021395) Mapk1 (MGP_SPRETEiJ_G0021396) MGP_SPRETEiJ_G0021397 Ppil2 (MGP_SPRETEiJ_G0021398) 2610318N02Rik (MGP_SPRETEiJ_G0021399) Sdf2l1 (MGP_SPRETEiJ_G0021400) Ccdc116 (MGP_SPRETEiJ_G0021401) Ryukyu mouse MODERN SPECIES 7 Marf1 (MGP_CAROLIEiJ_G0020476) Nde1 (MGP_CAROLIEiJ_G0020477) Myh11 (MGP_CAROLIEiJ_G0020478) Cep20 (MGP_CAROLIEiJ_G0020479) Abcc1 (MGP_CAROLIEiJ_G0020480) MGP_CAROLIEiJ_G0020481 MGP_CAROLIEiJ_G0020482 Snai2 (MGP_CAROLIEiJ_G0020483) Efcab1 (MGP_CAROLIEiJ_G0020484) Ube2v2 (MGP_CAROLIEiJ_G0020485) Mcm4 (MGP_CAROLIEiJ_G0020486) Prkdc (MGP_CAROLIEiJ_G0020487) Mzt2 (MGP_CAROLIEiJ_G0020488) Spidr (MGP_CAROLIEiJ_G0020489) Pkp2 (MGP_CAROLIEiJ_G0020490) #21 Yars2 (MGP_CAROLIEiJ_G0020491) #22 Dnm1l (MGP_CAROLIEiJ_G0020492) #23 Fgd4 (MGP_CAROLIEiJ_G0020493) #24 Or7a40 (MGP_CAROLIEiJ_G0020494) Spag6l (MGP_CAROLIEiJ_G0020495) Igll1 (MGP_CAROLIEiJ_G0020496) MGP_CAROLIEiJ_G0020497 MGP_CAROLIEiJ_G0020498 Top3b (MGP_CAROLIEiJ_G0020499) Ppm1f (MGP_CAROLIEiJ_G0020500) Mapk1 (MGP_CAROLIEiJ_G0020501) MGP_CAROLIEiJ_G0020502 Ppil2 (MGP_CAROLIEiJ_G0020503) 2610318N02Rik (MGP_CAROLIEiJ_G0020504) Sdf2l1 (MGP_CAROLIEiJ_G0020505) MGP_CAROLIEiJ_G0020506 Shrew mouse MODERN SPECIES 3 Bmerb1 (MGP_PahariEiJ_G0016181) Marf1 (MGP_PahariEiJ_G0016182) Nde1 (MGP_PahariEiJ_G0016183) Myh11 (MGP_PahariEiJ_G0016184) Cep20 (MGP_PahariEiJ_G0016185) Abcc1 (MGP_PahariEiJ_G0016186) MGP_PahariEiJ_G0016187 Snai2 (MGP_PahariEiJ_G0016188) Efcab1 (MGP_PahariEiJ_G0016189) Ube2v2 (MGP_PahariEiJ_G0016190) Mcm4 (MGP_PahariEiJ_G0016191) Prkdc (MGP_PahariEiJ_G0016192) Mzt2 (MGP_PahariEiJ_G0016193) Spidr (MGP_PahariEiJ_G0016194) Pkp2 (MGP_PahariEiJ_G0016195) #21 Yars2 (MGP_PahariEiJ_G0016196) #22 Dnm1l (MGP_PahariEiJ_G0016197) #23 Fgd4 (MGP_PahariEiJ_G0016198) #24 Or7a40 (MGP_PahariEiJ_G0016199) Spag6l (MGP_PahariEiJ_G0016200) Igll1 (MGP_PahariEiJ_G0016201) MGP_PahariEiJ_G0016202 MGP_PahariEiJ_G0016203 Top3b (MGP_PahariEiJ_G0016204) Ppm1f (MGP_PahariEiJ_G0016205) Mapk1 (MGP_PahariEiJ_G0016206) MGP_PahariEiJ_G0016207 Ppil2 (MGP_PahariEiJ_G0016208) 2610318N02Rik (MGP_PahariEiJ_G0016209) Sdf2l1 (MGP_PahariEiJ_G0016210) Ccdc116 (MGP_PahariEiJ_G0016211) Rat MODERN SPECIES 2 Snai2 (ENSRNOG00000047699) Clxn (ENSRNOG00000050091) Ube2v2 (ENSRNOG00000001829) Mcm4 (ENSRNOG00000001833) Prkdc (ENSRNOG00000025028) Mzt2b (ENSRNOG00000066842) Spidr (ENSRNOG00000037851) Cebpd (ENSRNOG00000050869) AABR07034767.1 (ENSRNOG00000001825) #21 Yars2 (ENSRNOG00000025252) #22 Dnm1l (ENSRNOG00000001813) #23 Fgd4 (ENSRNOG00000059491) #24 LOC100912028 (ENSRNOG00000070534) LOC102546862 (ENSRNOG00000055545) Spag6l (ENSRNOG00000025787) Igll1 (ENSRNOG00000025990) Vpreb1 (ENSRNOG00000052348) Top3b (ENSRNOG00000001845) Ppm1f (ENSRNOG00000037909) Mapk1 (ENSRNOG00000001849) Ppil2 (ENSRNOG00000026900) RGD1308065 (ENSRNOG00000026918) Sdf2l1 (ENSRNOG00000001859) Ccdc116 (ENSRNOG00000001860) Ydjc (ENSRNOG00000001861) Upper Galilee mountains blind mole rat MODERN SPECIES 668 ENSNGAG00000021742 Lrrk2 (ENSNGAG00000022979) #11 Slc2a13 (ENSNGAG00000016956) #12 ENSNGAG00000011942 #13 Abcd2 (ENSNGAG00000023010) #14 Kif21a (ENSNGAG00000023544) #15 Cpne8 (ENSNGAG00000024044) #17 Alg10b (ENSNGAG00000004690) #19 ENSNGAG00000001023 Syt10 (ENSNGAG00000014442) #20 Pkp2 (ENSNGAG00000003543) #21 Yars2 (ENSNGAG00000021477) #22 Dnm1l (ENSNGAG00000012978) #23 ENSNGAG00000010899 Fgd4 (ENSNGAG00000023777) #24 Lesser Egyptian jerboa MODERN SPECIES 98 Pdzk1ip1 (ENSJJAG00000013927) ENSJJAG00000013211 Foxd2 (ENSJJAG00000014328) Spata6 (ENSJJAG00000010848) ENSJJAG00000009281 Bend5 (ENSJJAG00000007543) ENSJJAG00000004932 Elavl4 (ENSJJAG00000023099) ENSJJAG00000014086 Dmrta2 (ENSJJAG00000021824) Faf1 (ENSJJAG00000021352) Cdkn2c (ENSJJAG00000020524) Alg10b (ENSJJAG00000019582) #19 Syt10 (ENSJJAG00000019374) #20 Pkp2 (ENSJJAG00000014586) #21 Yars2 (ENSJJAG00000000641) #22 Dnm1l (ENSJJAG00000023169) #23 ENSJJAG00000013851 Fgd4 (ENSJJAG00000018423) #24 Gng12 (ENSJJAG00000017730) Gadd45a (ENSJJAG00000016764) ENSJJAG00000016243 ENSJJAG00000016153 Serbp1 (ENSJJAG00000023871) Il12rb2 (ENSJJAG00000019502) Tacstd2 (ENSJJAG00000014125) Mysm1 (ENSJJAG00000016612) ENSJJAG00000016007 Jun (ENSJJAG00000001078) ENSJJAG00000022820 Fggy (ENSJJAG00000021024) Kangaroo rat MODERN SPECIES 486 ENSDORG00000028671 Pkp2 (ENSDORG00000012523) #21 ENSDORG00000011489 #22 Dnm1l (ENSDORG00000011488) #23 Bicd1 (ENSDORG00000024282) #25 ENSDORG00000004958 Dennd5b (ENSDORG00000028666) #27 Sinhcaf (ENSDORG00000027351) #28 Caprin2 (ENSDORG00000012639) #29 Ipo8 (ENSDORG00000005959) #30 Tmtc1 (ENSDORG00000003472) #32 Ergic2 (ENSDORG00000011478) #33 Far2 (ENSDORG00000025271) #34 Ccdc91 (ENSDORG00000005372) #35 Pthlh (ENSDORG00000026766) #36 Mansc4 (ENSDORG00000010775) Mrps35 (ENSDORG00000003486) Rep15 (ENSDORG00000023308) Lagomorpha ANCESTRAL SPECIES 27 ENSGT00390000016228 ENSGT00730000111061.p.y.a ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 #11 ENSGT00940000155870.b #12 ENSGT00390000002848 #13 ENSGT00950000182955.a.b.b #14 ENSGT00940000155323.a #15 ENSGT00940000159679 #17 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000163501 ENSGT00940000153678.a.a #27 ENSGT00390000006485.c #28 ENSGT00940000153438.b #29 ENSGT00940000158848 #30 ENSGT00940000158027 #32 ENSGT00530000063113.A #33 ENSGT00390000006367.c #34 ENSGT00390000015899 #35 ENSGT00390000004933 #36 Rabbit MODERN SPECIES 19 GXYLT1 (ENSOCUG00000027426) PDZRN4 (ENSOCUG00000005658) CNTN1 (ENSOCUG00000009395) ENSOCUG00000034185 ENSOCUG00000032666 LRRK2 (ENSOCUG00000007857) #11 SLC2A13 (ENSOCUG00000032613) #12 ENSOCUG00000004661 #13 ABCD2 (ENSOCUG00000016168) #14 KIF21A (ENSOCUG00000016630) #15 ENSOCUG00000034840 CPNE8 (ENSOCUG00000017747) #17 ENSOCUG00000015824 #19 SYT10 (ENSOCUG00000004624) #20 PKP2 (ENSOCUG00000000023) #21 YARS2 (ENSOCUG00000000022) #22 DNM1L (ENSOCUG00000000021) #23 FGD4 (ENSOCUG00000013919) #24 ENSOCUG00000035361 BICD1 (ENSOCUG00000017857) #25 RESF1 (ENSOCUG00000006589) #26 ENSOCUG00000033986 AMN1 (ENSOCUG00000011737) ENSOCUG00000023987 DENND5B (ENSOCUG00000000778) #27 SINHCAF (ENSOCUG00000008618) #28 CAPRIN2 (ENSOCUG00000017805) #29 IPO8 (ENSOCUG00000029016) #30 TMTC1 (ENSOCUG00000001748) #32 ENSOCUG00000017255 #33 FAR2 (ENSOCUG00000017243) #34 Pika MODERN SPECIES 5077 ENSOPRG00000007830 #21 ENSOPRG00000007817 #22 ENSOPRG00000007776 #23 Tree shrew MODERN SPECIES 5769 PKP2 (ENSTBEG00000000286) #21 YARS2 (ENSTBEG00000008274) #22 DNM1L (ENSTBEG00000007704) #23