Rodentia_A ANCESTRAL SPECIES 4 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 Sciuridae ANCESTRAL SPECIES 15 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000164528 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 Marmotini ANCESTRAL SPECIES 19 ENSGT00390000016228 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ENSGT00940000158848 ENSGT00940000158027 ENSGT01100000264395 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 Marmotini_b ANCESTRAL SPECIES 11 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00940000158267 ENSGT00910000146950 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000162982 ENSGT00940000153678.a.a ENSGT00390000006485.c.lc.b ENSGT00940000153438.b ENSGT00940000158848 Arctic ground squirrel MODERN SPECIES 534 PKP2 (ENSUPAG00010013752) #21 YARS2 (ENSUPAG00010013765) #22 DNM1L (ENSUPAG00010000052) #23 FGD4 (ENSUPAG00010000374) #24 BICD1 (ENSUPAG00010000427) #25 RESF1 (ENSUPAG00010000541) #26 ENSUPAG00010000561 #27 Squirrel MODERN SPECIES 207 CNTN1 (ENSSTOG00000015991) LRRK2 (ENSSTOG00000000527) SLC2A13 (ENSSTOG00000012574) ABCD2 (ENSSTOG00000012764) KIF21A (ENSSTOG00000011688) CPNE8 (ENSSTOG00000005472) ENSSTOG00000025399 SYT10 (ENSSTOG00000022740) PKP2 (ENSSTOG00000024732) #21 YARS2 (ENSSTOG00000011917) #22 DNM1L (ENSSTOG00000011898) #23 FGD4 (ENSSTOG00000012543) #24 BICD1 (ENSSTOG00000004236) #25 ENSSTOG00000032422 #26 AMN1 (ENSSTOG00000008790) ETFBKMT (ENSSTOG00000026094) DENND5B (ENSSTOG00000007411) ENSSTOG00000007097 CAPRIN2 (ENSSTOG00000004672) ENSSTOG00000015509 Alpin marmot MODERN SPECIES 34 ZCRB1 (ENSMMMG00000022545) YAF2 (ENSMMMG00000022539) GXYLT1 (ENSMMMG00000022532) ENSMMMG00000022530 PDZRN4 (ENSMMMG00000022528) CNTN1 (ENSMMMG00000022503) LRRK2 (ENSMMMG00000022478) SLC2A13 (ENSMMMG00000022471) ABCD2 (ENSMMMG00000022441) KIF21A (ENSMMMG00000022225) CPNE8 (ENSMMMG00000022203) ENSMMMG00000022193 SYT10 (ENSMMMG00000022187) ENSMMMG00000022176 PKP2 (ENSMMMG00000022136) #21 YARS2 (ENSMMMG00000022130) #22 DNM1L (ENSMMMG00000022062) #23 FGD4 (ENSMMMG00000022046) #24 BICD1 (ENSMMMG00000022030) #25 ENSMMMG00000022009 ENSMMMG00000022008 #26 ENSMMMG00000021996 ENSMMMG00000021993 AMN1 (ENSMMMG00000021990) ETFBKMT (ENSMMMG00000021988) DENND5B (ENSMMMG00000021976) SINHCAF (ENSMMMG00000021971) ENSMMMG00000021968 ENSMMMG00000021963 IPO8 (ENSMMMG00000021957) TMTC1 (ENSMMMG00000021829) Eurasian red squirrel MODERN SPECIES 14 GXYLT1 (ENSSVLG00005023725) ENSSVLG00005023701 ENSSVLG00005023688 PDZRN4 (ENSSVLG00005023595) CNTN1 (ENSSVLG00005023245) ENSSVLG00005023091 LRRK2 (ENSSVLG00005023045) SLC2A13 (ENSSVLG00005022999) C12orf40 (ENSSVLG00005022853) ABCD2 (ENSSVLG00005022770) KIF21A (ENSSVLG00005021698) CPNE8 (ENSSVLG00005021341) ENSSVLG00005021292 SYT10 (ENSSVLG00005021217) PKP2 (ENSSVLG00005021133) #21 YARS2 (ENSSVLG00005021083) #22 DNM1L (ENSSVLG00005020928) #23 FGD4 (ENSSVLG00005020182) #24 ENSSVLG00005020064 BICD1 (ENSSVLG00005019995) #25 RESF1 (ENSSVLG00005019927) #26 ENSSVLG00005019891 ENSSVLG00005019844 AMN1 (ENSSVLG00005019716) ETFBKMT (ENSSVLG00005019687) DENND5B (ENSSVLG00005019417) ENSSVLG00005019201 ENSSVLG00005019100 CAPRIN2 (ENSSVLG00005018545) IPO8 (ENSSVLG00005018259) ENSSVLG00005018216 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Hystricomorpha_a ANCESTRAL SPECIES 76 ENSGT00940000158267 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Hystricomorpha_b ANCESTRAL SPECIES 102 ENSGT00940000158267 ENSGT00940000155870.b ENSGT00390000002848 ENSGT00950000182955.a.b.b ENSGT00940000155323.a ENSGT00940000159679 ENSGT00390000012906 ENSGT00940000158899 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 ENSGT00940000153678.a.a ENSGT00390000006485.c ENSGT00940000153438.b ENSGT00940000158848 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Long-tailed chinchilla MODERN SPECIES 212 LRRK2 (ENSCLAG00000000858) SLC2A13 (ENSCLAG00000000454) C12orf40 (ENSCLAG00000000532) ABCD2 (ENSCLAG00000000619) KIF21A (ENSCLAG00000001397) ENSCLAG00000000855 CPNE8 (ENSCLAG00000000899) ENSCLAG00000000434 ENSCLAG00000000451 SYT10 (ENSCLAG00000000534) PKP2 (ENSCLAG00000000587) #21 YARS2 (ENSCLAG00000002000) #22 DNM1L (ENSCLAG00000002548) #23 FGD4 (ENSCLAG00000001753) #24 BICD1 (ENSCLAG00000002981) #25 ENSCLAG00000003760 #26 DENND5B (ENSCLAG00000004154) SINHCAF (ENSCLAG00000001263) CAPRIN2 (ENSCLAG00000001513) IPO8 (ENSCLAG00000002557) ENSCLAG00000000571 TMTC1 (ENSCLAG00000000748) ERGIC2 (ENSCLAG00000001082) FAR2 (ENSCLAG00000000959) CCDC91 (ENSCLAG00000000884) PTHLH (ENSCLAG00000001423) KLHL42 (ENSCLAG00000001746) Degu MODERN SPECIES 88 ENSODEG00000019048 ENSODEG00000005890 PKP2 (ENSODEG00000004908) #21 YARS2 (ENSODEG00000006403) #22 DNM1L (ENSODEG00000004675) #23 ENSODEG00000019041 FGD4 (ENSODEG00000004678) #24 BICD1 (ENSODEG00000004640) #25 ENSODEG00000005005 #25 ENSODEG00000019136 ENSODEG00000019216 ENSODEG00000019221 ENSODEG00000005428 AMN1 (ENSODEG00000005175) DENND5B (ENSODEG00000004914) ENSODEG00000005420 ENSODEG00000005301 CAPRIN2 (ENSODEG00000005454) ENSODEG00000004763 Guinea pig MODERN SPECIES 54 LRRK2 (ENSCPOG00000007935) SLC2A13 (ENSCPOG00000010774) ABCD2 (ENSCPOG00000010205) KIF21A (ENSCPOG00000010726) CPNE8 (ENSCPOG00000008877) ENSCPOG00000040138 SYT10 (ENSCPOG00000006918) PKP2 (ENSCPOG00000012340) #21 YARS2 (ENSCPOG00000015276) #22 DNM1L (ENSCPOG00000015273) #23 FGD4 (ENSCPOG00000015271) #24 BICD1 (ENSCPOG00000001551) #25 ENSCPOG00000032610 #26 ENSCPOG00000027414 ENSCPOG00000038662 AMN1 (ENSCPOG00000032967) ENSCPOG00000008943 DENND5B (ENSCPOG00000005517) SINHCAF (ENSCPOG00000031402) CAPRIN2 (ENSCPOG00000006625) IPO8 (ENSCPOG00000010365) TMTC1 (ENSCPOG00000014889) ERGIC2 (ENSCPOG00000015668) FAR2 (ENSCPOG00000007356) Naked mole-rat female MODERN SPECIES 8 ABCD2 (ENSHGLG00000012569) ENSHGLG00000018960 ENSHGLG00000044300 ENSHGLG00000016118 ENSHGLG00000049034 ENSHGLG00000006477 ENSHGLG00000007513 ENSHGLG00000020628 ENSHGLG00000005157 ALG10 (ENSHGLG00000042948) ENSHGLG00000010318 ENSHGLG00000004697 ENSHGLG00000005218 ENSHGLG00000036554 PKP2 (ENSHGLG00000008295) #21 YARS2 (ENSHGLG00000009938) #22 DNM1L (ENSHGLG00000018513) #23 ENSHGLG00000034994 FGD4 (ENSHGLG00000010358) #24 ENSHGLG00000014911 #25 ENSHGLG00000033197 ENSHGLG00000039155 ENSHGLG00000036563 ENSHGLG00000044149 #26 ENSHGLG00000033198 ENSHGLG00000044038 ENSHGLG00000040624 ENSHGLG00000044525 ENSHGLG00000035643 ENSHGLG00000044475 ENSHGLG00000041680