Rodentia_A ANCESTRAL SPECIES 4 ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 #13 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #14 ENSGT00910000146950 ENSGT00940000155870.b #15 ENSGT00390000002848 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000162982 #28 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 Sciuridae ANCESTRAL SPECIES 15 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 #13 ENSGT00940000164528 ENSGT00940000158267 #14 ENSGT00910000146950 ENSGT00940000155870.b #15 ENSGT00390000002848 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000162982 #28 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 Marmotini ANCESTRAL SPECIES 19 ENSGT00390000016228 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 #13 ENSGT00940000158267 #14 ENSGT00910000146950 ENSGT00940000155870.b #15 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000162982 #28 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 ENSGT00940000158027 ENSGT01100000264395 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 Marmotini_b ANCESTRAL SPECIES 11 ENSGT00730000111061.p.z ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 #13 ENSGT00940000158267 #14 ENSGT00910000146950 ENSGT00940000155870.b #15 ENSGT00390000002848 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000162982 #28 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c.lc.b #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 Squirrel MODERN SPECIES 207 CNTN1 (ENSSTOG00000015991) #13 LRRK2 (ENSSTOG00000000527) #14 SLC2A13 (ENSSTOG00000012574) #15 ABCD2 (ENSSTOG00000012764) #16 KIF21A (ENSSTOG00000011688) #17 CPNE8 (ENSSTOG00000005472) #18 ENSSTOG00000025399 #19 SYT10 (ENSSTOG00000022740) #20 PKP2 (ENSSTOG00000024732) #21 YARS2 (ENSSTOG00000011917) #22 DNM1L (ENSSTOG00000011898) #23 FGD4 (ENSSTOG00000012543) #24 BICD1 (ENSSTOG00000004236) #25 ENSSTOG00000032422 #26 AMN1 (ENSSTOG00000008790) #27 ETFBKMT (ENSSTOG00000026094) #28 DENND5B (ENSSTOG00000007411) #29 ENSSTOG00000007097 #30 CAPRIN2 (ENSSTOG00000004672) #31 ENSSTOG00000015509 #32 Arctic ground squirrel MODERN SPECIES 534 PKP2 (ENSUPAG00010013752) #21 YARS2 (ENSUPAG00010013765) #22 DNM1L (ENSUPAG00010000052) #23 FGD4 (ENSUPAG00010000374) #24 BICD1 (ENSUPAG00010000427) #25 RESF1 (ENSUPAG00010000541) #26 ENSUPAG00010000561 Alpin marmot MODERN SPECIES 34 ZCRB1 (ENSMMMG00000022545) YAF2 (ENSMMMG00000022539) GXYLT1 (ENSMMMG00000022532) ENSMMMG00000022530 PDZRN4 (ENSMMMG00000022528) CNTN1 (ENSMMMG00000022503) #13 LRRK2 (ENSMMMG00000022478) #14 SLC2A13 (ENSMMMG00000022471) #15 ABCD2 (ENSMMMG00000022441) #16 KIF21A (ENSMMMG00000022225) #17 CPNE8 (ENSMMMG00000022203) #18 ENSMMMG00000022193 #19 SYT10 (ENSMMMG00000022187) #20 ENSMMMG00000022176 PKP2 (ENSMMMG00000022136) #21 YARS2 (ENSMMMG00000022130) #22 DNM1L (ENSMMMG00000022062) #23 FGD4 (ENSMMMG00000022046) #24 BICD1 (ENSMMMG00000022030) #25 ENSMMMG00000022009 ENSMMMG00000022008 #26 ENSMMMG00000021996 ENSMMMG00000021993 AMN1 (ENSMMMG00000021990) #27 ETFBKMT (ENSMMMG00000021988) #28 DENND5B (ENSMMMG00000021976) #29 SINHCAF (ENSMMMG00000021971) #30 ENSMMMG00000021968 #31 ENSMMMG00000021963 #31 IPO8 (ENSMMMG00000021957) #32 TMTC1 (ENSMMMG00000021829) Eurasian red squirrel MODERN SPECIES 14 GXYLT1 (ENSSVLG00005023725) ENSSVLG00005023701 ENSSVLG00005023688 PDZRN4 (ENSSVLG00005023595) CNTN1 (ENSSVLG00005023245) #13 ENSSVLG00005023091 LRRK2 (ENSSVLG00005023045) #14 SLC2A13 (ENSSVLG00005022999) #15 C12orf40 (ENSSVLG00005022853) ABCD2 (ENSSVLG00005022770) #16 KIF21A (ENSSVLG00005021698) #17 CPNE8 (ENSSVLG00005021341) #18 ENSSVLG00005021292 #19 SYT10 (ENSSVLG00005021217) #20 PKP2 (ENSSVLG00005021133) #21 YARS2 (ENSSVLG00005021083) #22 DNM1L (ENSSVLG00005020928) #23 FGD4 (ENSSVLG00005020182) #24 ENSSVLG00005020064 BICD1 (ENSSVLG00005019995) #25 RESF1 (ENSSVLG00005019927) #26 ENSSVLG00005019891 ENSSVLG00005019844 AMN1 (ENSSVLG00005019716) #27 ETFBKMT (ENSSVLG00005019687) #28 DENND5B (ENSSVLG00005019417) #29 ENSSVLG00005019201 ENSSVLG00005019100 #30 CAPRIN2 (ENSSVLG00005018545) #31 IPO8 (ENSSVLG00005018259) #32 ENSSVLG00005018216 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00390000013995.b.b ENSGT00940000156242 ENSGT00950000183062.a.a.b ENSGT00940000155915 #13 ENSGT00720000108953 ENSGT00940000164528 ENSGT00940000158267 #14 ENSGT00940000155870.b #15 ENSGT00390000002848 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Hystricomorpha_a ANCESTRAL SPECIES 76 ENSGT00940000158267 #14 ENSGT00940000155870.b #15 ENSGT00390000002848 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Hystricomorpha_b ANCESTRAL SPECIES 102 ENSGT00940000158267 #14 ENSGT00940000155870.b #15 ENSGT00390000002848 ENSGT00950000182955.a.b.b #16 ENSGT00940000155323.a #17 ENSGT00940000159679 #18 ENSGT00390000012906 #19 ENSGT00940000158899 #20 ENSGT00940000158677 #21 ENSGT00390000013709.b #22 ENSGT00940000155504 #23 ENSGT00940000155765 #24 ENSGT00940000154471.a.b.a.b.b #25 ENSGT00390000018491 #26 ENSGT00730000111305 #27 ENSGT00940000153678.a.a #29 ENSGT00390000006485.c #30 ENSGT00940000153438.b #31 ENSGT00940000158848 #32 ENSGT00940000158027 ENSGT00530000063113.A ENSGT00390000006367.c ENSGT00390000015899 ENSGT00390000004933 ENSGT00940000160124 Long-tailed chinchilla MODERN SPECIES 212 LRRK2 (ENSCLAG00000000858) #14 SLC2A13 (ENSCLAG00000000454) #15 C12orf40 (ENSCLAG00000000532) ABCD2 (ENSCLAG00000000619) #16 KIF21A (ENSCLAG00000001397) #17 ENSCLAG00000000855 CPNE8 (ENSCLAG00000000899) #18 ENSCLAG00000000434 ENSCLAG00000000451 #19 SYT10 (ENSCLAG00000000534) #20 PKP2 (ENSCLAG00000000587) #21 YARS2 (ENSCLAG00000002000) #22 DNM1L (ENSCLAG00000002548) #23 FGD4 (ENSCLAG00000001753) #24 BICD1 (ENSCLAG00000002981) #25 ENSCLAG00000003760 #26 DENND5B (ENSCLAG00000004154) #29 SINHCAF (ENSCLAG00000001263) #30 CAPRIN2 (ENSCLAG00000001513) #31 IPO8 (ENSCLAG00000002557) #32 ENSCLAG00000000571 TMTC1 (ENSCLAG00000000748) ERGIC2 (ENSCLAG00000001082) FAR2 (ENSCLAG00000000959) CCDC91 (ENSCLAG00000000884) PTHLH (ENSCLAG00000001423) KLHL42 (ENSCLAG00000001746) Degu MODERN SPECIES 88 ENSODEG00000019048 ENSODEG00000005890 PKP2 (ENSODEG00000004908) #21 YARS2 (ENSODEG00000006403) #22 DNM1L (ENSODEG00000004675) #23 ENSODEG00000019041 FGD4 (ENSODEG00000004678) #24 BICD1 (ENSODEG00000004640) #25 ENSODEG00000005005 #25 ENSODEG00000019136 ENSODEG00000019216 ENSODEG00000019221 ENSODEG00000005428 AMN1 (ENSODEG00000005175) #27 DENND5B (ENSODEG00000004914) #29 ENSODEG00000005420 ENSODEG00000005301 #30 CAPRIN2 (ENSODEG00000005454) #31 ENSODEG00000004763 #32 Guinea pig MODERN SPECIES 54 LRRK2 (ENSCPOG00000007935) #14 SLC2A13 (ENSCPOG00000010774) #15 ABCD2 (ENSCPOG00000010205) #16 KIF21A (ENSCPOG00000010726) #17 CPNE8 (ENSCPOG00000008877) #18 ENSCPOG00000040138 #19 SYT10 (ENSCPOG00000006918) #20 PKP2 (ENSCPOG00000012340) #21 YARS2 (ENSCPOG00000015276) #22 DNM1L (ENSCPOG00000015273) #23 FGD4 (ENSCPOG00000015271) #24 BICD1 (ENSCPOG00000001551) #25 ENSCPOG00000032610 #26 ENSCPOG00000027414 ENSCPOG00000038662 AMN1 (ENSCPOG00000032967) #27 ENSCPOG00000008943 DENND5B (ENSCPOG00000005517) #29 SINHCAF (ENSCPOG00000031402) #30 CAPRIN2 (ENSCPOG00000006625) #31 IPO8 (ENSCPOG00000010365) #32 TMTC1 (ENSCPOG00000014889) ERGIC2 (ENSCPOG00000015668) FAR2 (ENSCPOG00000007356) Naked mole-rat female MODERN SPECIES 8 ABCD2 (ENSHGLG00000012569) #16 ENSHGLG00000018960 ENSHGLG00000044300 ENSHGLG00000016118 ##31 ENSHGLG00000049034 ENSHGLG00000006477 #17 ENSHGLG00000007513 ENSHGLG00000020628 ENSHGLG00000005157 #18 ALG10 (ENSHGLG00000042948) #19 ENSHGLG00000010318 ENSHGLG00000004697 ENSHGLG00000005218 #20 ENSHGLG00000036554 PKP2 (ENSHGLG00000008295) #21 YARS2 (ENSHGLG00000009938) #22 DNM1L (ENSHGLG00000018513) #23 ENSHGLG00000034994 FGD4 (ENSHGLG00000010358) #24 ENSHGLG00000014911 #25 ENSHGLG00000033197 ENSHGLG00000039155 ENSHGLG00000036563 ENSHGLG00000044149 #26 ENSHGLG00000033198 ENSHGLG00000044038 ENSHGLG00000040624 ENSHGLG00000044525 ENSHGLG00000035643 ENSHGLG00000044475 #27 ENSHGLG00000041680