Glires	ANCESTRAL SPECIES	21	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00900000143551	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00900000143551	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Rodentia_B	ANCESTRAL SPECIES	42	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Kangaroo rat	MODERN SPECIES	498	Raver1 (ENSDORG00000010106) #7	Tyk2 (ENSDORG00000010102) #8	Cdc37 (ENSDORG00000029470) #9	Pde4a (ENSDORG00000013594) #10	Keap1 (ENSDORG00000013598) #11	ENSDORG00000028548 #12	Atg4d (ENSDORG00000013442) #13	Kri1 (ENSDORG00000013443) #14	Ap1m2 (ENSDORG00000013447) #15	Slc44a2 (ENSDORG00000011152) #16	Ilf3 (ENSDORG00000015231) #17	Qtrt1 (ENSDORG00000015233) #18	Dnm2 (ENSDORG00000015234) #19	Tmed1 (ENSDORG00000025876) #20	AB124611 (ENSDORG00000013393) #21	Carm1 (ENSDORG00000013395) #22	Yipf2 (ENSDORG00000013396) #23	Timm29 (ENSDORG00000013397) #24	Smarca4 (ENSDORG00000002544) #25	Ldlr (ENSDORG00000011310) #26	Spc24 (ENSDORG00000029533) #27	ENSDORG00000023590 #28	Dock6 (ENSDORG00000006851) #29	Angptl8 (ENSDORG00000006854) #30	Rab3d (ENSDORG00000023961) #31	Tmem205 (ENSDORG00000002522) #32	Plppr2 (ENSDORG00000002524) #33	Epor (ENSDORG00000002529) #34	Rgl3 (ENSDORG00000002531) #35	ENSDORG00000002533 #36	Prkcsh (ENSDORG00000002536) #37
Myomorpha	ANCESTRAL SPECIES	51	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Muroidea	ANCESTRAL SPECIES	58	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Northern American deer mouse	MODERN SPECIES	20	Tyk2 (ENSPEMG00000011071) #8	Cdc37 (ENSPEMG00000023710) #9	Pde4a (ENSPEMG00000023071) #10	Keap1 (ENSPEMG00000022907) #11	S1pr5 (ENSPEMG00000015460)	Atg4d (ENSPEMG00000004633) #13	Kri1 (ENSPEMG00000024201) #14	Cdkn2d (ENSPEMG00000030087)	Ap1m2 (ENSPEMG00000023352) #15	Slc44a2 (ENSPEMG00000008320) #16	ENSPEMG00000000465 #17	Qtrt1 (ENSPEMG00000009897) #18	Dnm2 (ENSPEMG00000022844) #19	Tmed1 (ENSPEMG00000014342) #20	AB124611 (ENSPEMG00000011218) #21	Carm1 (ENSPEMG00000023286) #22	Yipf2 (ENSPEMG00000022941) #23	Timm29 (ENSPEMG00000031004) #24	Smarca4 (ENSPEMG00000020389) #25	Ldlr (ENSPEMG00000021260) #26	Spc24 (ENSPEMG00000009453) #27	Kank2 (ENSPEMG00000000736) #28	Dock6 (ENSPEMG00000010133) #29	Angptl8 (ENSPEMG00000015174) #30	ENSPEMG00000014770	Rab3d (ENSPEMG00000031189) #31	Tmem205 (ENSPEMG00000020320) #32	Ccdc159 (ENSPEMG00000014545)	Plppr2 (ENSPEMG00000020521) #33	Swsap1 (ENSPEMG00000017184)	Epor (ENSPEMG00000020463) #34
Prairie vole	MODERN SPECIES	13	Tyk2 (ENSMOCG00000017994) #8	Cdc37 (ENSMOCG00000020700) #9	Pde4a (ENSMOCG00000007095) #10	Keap1 (ENSMOCG00000009445) #11	S1pr5 (ENSMOCG00000005836)	Atg4d (ENSMOCG00000002959) #13	Kri1 (ENSMOCG00000017013) #14	Cdkn2d (ENSMOCG00000016257)	Ap1m2 (ENSMOCG00000000638) #15	Slc44a2 (ENSMOCG00000014267) #16	Ilf3 (ENSMOCG00000018740) #17	Qtrt1 (ENSMOCG00000019584) #18	Dnm2 (ENSMOCG00000018580) #19	Tmed1 (ENSMOCG00000007785) #20	AB124611 (ENSMOCG00000014256) #21	Carm1 (ENSMOCG00000004215) #22	Yipf2 (ENSMOCG00000017806) #23	ENSMOCG00000019898 #24	Smarca4 (ENSMOCG00000022209) #25	Ldlr (ENSMOCG00000016718) #26	Spc24 (ENSMOCG00000023025) #27	Kank2 (ENSMOCG00000008426) #28	Dock6 (ENSMOCG00000015812) #29	Angptl8 (ENSMOCG00000022983) #30	Rab3d (ENSMOCG00000002683) #31	Tmem205 (ENSMOCG00000003259) #32	Ccdc159 (ENSMOCG00000010436)	Plppr2 (ENSMOCG00000011755) #33	Swsap1 (ENSMOCG00000010976)	Epor (ENSMOCG00000013170) #34	Rgl3 (ENSMOCG00000014876) #35
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Chinese hamster chok1gshd	MODERN SPECIES	189	Tyk2 (ENSCGRG00001016315) #8	ENSCGRG00001017764 #9	Pde4a (ENSCGRG00001014442) #10	Keap1 (ENSCGRG00001016562) #11	S1pr5 (ENSCGRG00001009679)	Atg4d (ENSCGRG00001017644) #13	Kri1 (ENSCGRG00001018764) #14	Cdkn2d (ENSCGRG00001019561)	Ap1m2 (ENSCGRG00001020691) #15	Slc44a2 (ENSCGRG00001014087) #16	Ilf3 (ENSCGRG00001021577) #17	Qtrt1 (ENSCGRG00001001152) #18	Dnm2 (ENSCGRG00001015804) #19	Tmed1 (ENSCGRG00001018097) #20	AB124611 (ENSCGRG00001019412) #21	Carm1 (ENSCGRG00001023212) #22	Yipf2 (ENSCGRG00001005089) #23	Timm29 (ENSCGRG00001007273) #24	Smarca4 (ENSCGRG00001016732) #25	Ldlr (ENSCGRG00001014331) #26	Spc24 (ENSCGRG00001015236) #27	Kank2 (ENSCGRG00001019422) #28	Dock6 (ENSCGRG00001024445) #29	Angptl8 (ENSCGRG00001017874) #30	Rab3d (ENSCGRG00001019307) #31	Tmem205 (ENSCGRG00001022126) #32	Ccdc159 (ENSCGRG00001023310)	Plppr2 (ENSCGRG00001018956) #33	Swsap1 (ENSCGRG00001003241)	Epor (ENSCGRG00001009147) #34	Rgl3 (ENSCGRG00001012320) #35
Golden Hamster	MODERN SPECIES	700	Tyk2 (ENSMAUG00000017865) #8	Cdc37 (ENSMAUG00000008486) #9	Pde4a (ENSMAUG00000013828) #10	Keap1 (ENSMAUG00000007914) #11	S1pr5 (ENSMAUG00000000259)	Atg4d (ENSMAUG00000020205) #13	Kri1 (ENSMAUG00000011484) #14	Cdkn2d (ENSMAUG00000001161)	Ap1m2 (ENSMAUG00000012894) #15	Slc44a2 (ENSMAUG00000010847) #16	Ilf3 (ENSMAUG00000020405) #17	Qtrt1 (ENSMAUG00000020794) #18	ENSMAUG00000019307 #19	ENSMAUG00000013381 #19	Tmed1 (ENSMAUG00000008835) #20	Carm1 (ENSMAUG00000020443) #22	Yipf2 (ENSMAUG00000019367) #23	Timm29 (ENSMAUG00000016236) #24	Smarca4 (ENSMAUG00000020731) #25	Ldlr (ENSMAUG00000018237) #26	Spc24 (ENSMAUG00000016753) #27	Kank2 (ENSMAUG00000011226) #28	Angptl8 (ENSMAUG00000014435) #30	Dock6 (ENSMAUG00000020369) #29	Rab3d (ENSMAUG00000011273) #31	Ccdc159 (ENSMAUG00000002172)	Plppr2 (ENSMAUG00000012058) #33	Swsap1 (ENSMAUG00000018796)	Epor (ENSMAUG00000015533) #34	Rgl3 (ENSMAUG00000015321) #35	Odad3 (ENSMAUG00000003747)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Mus	ANCESTRAL SPECIES	4	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34	ENSGT00940000161935 #35
spretus	MODERN SPECIES	18	Tyk2 (MGP_SPRETEiJ_G0032985) #8	Cdc37 (MGP_SPRETEiJ_G0032986) #9	Pde4a (MGP_SPRETEiJ_G0032987) #10	Keap1 (MGP_SPRETEiJ_G0032988) #11	S1pr5 (MGP_SPRETEiJ_G0032989)	Atg4d (MGP_SPRETEiJ_G0032990) #13	Kri1 (MGP_SPRETEiJ_G0032991) #14	Cdkn2d (MGP_SPRETEiJ_G0032992)	Ap1m2 (MGP_SPRETEiJ_G0032993) #15	Slc44a2 (MGP_SPRETEiJ_G0032994) #16	Ilf3 (MGP_SPRETEiJ_G0032995) #17	Qtrt1 (MGP_SPRETEiJ_G0032996) #18	Dnm2 (MGP_SPRETEiJ_G0032997) #19	Tmed1 (MGP_SPRETEiJ_G0032998) #20	AB124611 (MGP_SPRETEiJ_G0032999) #21	Carm1 (MGP_SPRETEiJ_G0033000) #22	Yipf2 (MGP_SPRETEiJ_G0033001) #23	Timm29 (MGP_SPRETEiJ_G0033002) #24	Smarca4 (MGP_SPRETEiJ_G0033003) #25	Ldlr (MGP_SPRETEiJ_G0033004) #26	Spc24 (MGP_SPRETEiJ_G0033005) #27	Kank2 (MGP_SPRETEiJ_G0033006) #28	Dock6 (MGP_SPRETEiJ_G0033007) #29	Angptl8 (MGP_SPRETEiJ_G0033008) #30	Rab3d (MGP_SPRETEiJ_G0033009) #31	Tmem205 (MGP_SPRETEiJ_G0033010) #32	Ccdc159 (MGP_SPRETEiJ_G0033011)	Plppr2 (MGP_SPRETEiJ_G0033012) #33	Epor (MGP_SPRETEiJ_G0033013) #34	Rgl3 (MGP_SPRETEiJ_G0033014) #35	Odad3 (MGP_SPRETEiJ_G0033015)
Steppe mouse	MODERN SPECIES	3115	Cdc37 (ENSMSIG00000016922) #9	Pde4a (ENSMSIG00000016751) #10	Keap1 (ENSMSIG00000016713) #11	S1pr5 (ENSMSIG00000016710)	Atg4d (ENSMSIG00000016653) #13	Kri1 (ENSMSIG00000016603) #14	Cdkn2d (ENSMSIG00000016582)	Ap1m2 (ENSMSIG00000016529) #15	Slc44a2 (ENSMSIG00000016395) #16	Ilf3 (ENSMSIG00000016302) #17	Qtrt1 (ENSMSIG00000016262) #18	Dnm2 (ENSMSIG00000015982) #19	Tmed1 (ENSMSIG00000015965) #20	AB124611 (ENSMSIG00000015890) #21	Yipf2 (ENSMSIG00000015831) #23	Carm1 (ENSMSIG00000015744) #22	Smarca4 (ENSMSIG00000015575) #25	Ldlr (ENSMSIG00000015469) #26	Spc24 (ENSMSIG00000015419) #27	Kank2 (ENSMSIG00000015384) #28	Angptl8 (ENSMSIG00000015367) #30	Dock6 (ENSMSIG00000015052) #29	Rab3d (ENSMSIG00000014980) #31	ENSMSIG00000014964 #32	Ccdc159 (ENSMSIG00000014895)	Plppr2 (ENSMSIG00000014788) #33	Swsap1 (ENSMSIG00000014781)	ENSMSIG00000014716 #34	ENSMSIG00000013921 #35	Odad3 (ENSMSIG00000013901)	Prkcsh (ENSMSIG00000013805) #37
Mouse	MODERN SPECIES	18	Tyk2 (ENSMUSG00000032175) #8	Cdc37 (ENSMUSG00000019471) #9	Pde4a (ENSMUSG00000032177) #10	Keap1 (ENSMUSG00000003308) #11	S1pr5 (ENSMUSG00000045087)	Atg4d (ENSMUSG00000002820) #13	Kri1 (ENSMUSG00000035047) #14	Cdkn2d (ENSMUSG00000096472)	Ap1m2 (ENSMUSG00000003309) #15	Slc44a2 (ENSMUSG00000057193) #16	Ilf3 (ENSMUSG00000032178) #17	Qtrt1 (ENSMUSG00000002825) #18	Dnm2 (ENSMUSG00000033335) #19	Tmed1 (ENSMUSG00000032180) #20	AB124611 (ENSMUSG00000057191) #21	Carm1 (ENSMUSG00000032185) #22	Yipf2 (ENSMUSG00000032182) #23	Timm29 (ENSMUSG00000048429) #24	Smarca4 (ENSMUSG00000032187) #25	Ldlr (ENSMUSG00000032193) #26	Spc24 (ENSMUSG00000074476) #27	Kank2 (ENSMUSG00000032194) #28	Dock6 (ENSMUSG00000032198) #29	Angptl8 (ENSMUSG00000047822) #30	Rab3d (ENSMUSG00000019066) #31	Tmem205 (ENSMUSG00000040883) #32	Ccdc159 (ENSMUSG00000006241)	Plppr2 (ENSMUSG00000040563) #33	Swsap1 (ENSMUSG00000051238)	Epor (ENSMUSG00000006235) #34	Rgl3 (ENSMUSG00000040146) #35
Ryukyu mouse	MODERN SPECIES	18	Tyk2 (MGP_CAROLIEiJ_G0031861) #8	Cdc37 (MGP_CAROLIEiJ_G0031862) #9	Pde4a (MGP_CAROLIEiJ_G0031863) #10	Keap1 (MGP_CAROLIEiJ_G0031864) #11	S1pr5 (MGP_CAROLIEiJ_G0031865)	Atg4d (MGP_CAROLIEiJ_G0031866) #13	Kri1 (MGP_CAROLIEiJ_G0031867) #14	Cdkn2d (MGP_CAROLIEiJ_G0031868)	Ap1m2 (MGP_CAROLIEiJ_G0031869) #15	Slc44a2 (MGP_CAROLIEiJ_G0031870) #16	Ilf3 (MGP_CAROLIEiJ_G0031871) #17	Qtrt1 (MGP_CAROLIEiJ_G0031872) #18	Dnm2 (MGP_CAROLIEiJ_G0031873) #19	Tmed1 (MGP_CAROLIEiJ_G0031874) #20	AB124611 (MGP_CAROLIEiJ_G0031875) #21	Carm1 (MGP_CAROLIEiJ_G0031876) #22	Yipf2 (MGP_CAROLIEiJ_G0031877) #23	Timm29 (MGP_CAROLIEiJ_G0031878) #24	Smarca4 (MGP_CAROLIEiJ_G0031879) #25	Ldlr (MGP_CAROLIEiJ_G0031880) #26	Spc24 (MGP_CAROLIEiJ_G0031881) #27	Kank2 (MGP_CAROLIEiJ_G0031882) #28	MGP_CAROLIEiJ_G0031883 #29	Angptl8 (MGP_CAROLIEiJ_G0031884) #30	Rab3d (MGP_CAROLIEiJ_G0031885) #31	Tmem205 (MGP_CAROLIEiJ_G0031886) #32	Ccdc159 (MGP_CAROLIEiJ_G0031887)	Plppr2 (MGP_CAROLIEiJ_G0031888) #33	Swsap1 (MGP_CAROLIEiJ_G0031889)	Epor (MGP_CAROLIEiJ_G0031890) #34	Rgl3 (MGP_CAROLIEiJ_G0031891) #35
Shrew mouse	MODERN SPECIES	1	Tyk2 (MGP_PahariEiJ_G0014727) #8	Cdc37 (MGP_PahariEiJ_G0014728) #9	Pde4a (MGP_PahariEiJ_G0014729) #10	Keap1 (MGP_PahariEiJ_G0014730) #11	S1pr5 (MGP_PahariEiJ_G0014731)	Atg4d (MGP_PahariEiJ_G0014732) #13	Kri1 (MGP_PahariEiJ_G0014733) #14	Cdkn2d (MGP_PahariEiJ_G0014734)	Ap1m2 (MGP_PahariEiJ_G0014735) #15	Slc44a2 (MGP_PahariEiJ_G0014736) #16	Ilf3 (MGP_PahariEiJ_G0014737) #17	Qtrt1 (MGP_PahariEiJ_G0014738) #18	Dnm2 (MGP_PahariEiJ_G0014739) #19	Tmed1 (MGP_PahariEiJ_G0014740) #20	AB124611 (MGP_PahariEiJ_G0014741) #21	Carm1 (MGP_PahariEiJ_G0014742) #22	Yipf2 (MGP_PahariEiJ_G0014743) #23	Timm29 (MGP_PahariEiJ_G0014744) #24	Smarca4 (MGP_PahariEiJ_G0014745) #25	Ldlr (MGP_PahariEiJ_G0014746) #26	MGP_PahariEiJ_G0014747 #27	Kank2 (MGP_PahariEiJ_G0014748) #28	Dock6 (MGP_PahariEiJ_G0014749) #29	Angptl8 (MGP_PahariEiJ_G0014750) #30	Rab3d (MGP_PahariEiJ_G0014751) #31	Tmem205 (MGP_PahariEiJ_G0014752) #32	Ccdc159 (MGP_PahariEiJ_G0014753)	Plppr2 (MGP_PahariEiJ_G0014754) #33	Swsap1 (MGP_PahariEiJ_G0014755)	Epor (MGP_PahariEiJ_G0014756) #34	Rgl3 (MGP_PahariEiJ_G0014757) #35
Rat	MODERN SPECIES	18	Tyk2 (ENSRNOG00000032948) #8	Cdc37 (ENSRNOG00000033426) #9	Pde4a (ENSRNOG00000020828) #10	Keap1 (ENSRNOG00000020878) #11	S1pr5 (ENSRNOG00000020901)	Atg4d (ENSRNOG00000047625) #13	Kri1 (ENSRNOG00000057447) #14	Cdkn2d (ENSRNOG00000064248)	Ap1m2 (ENSRNOG00000043093) #15	Slc44a2 (ENSRNOG00000031824) #16	Ilf3 (ENSRNOG00000022741) #17	Qtrt1 (ENSRNOG00000007158) #18	Dnm2 (ENSRNOG00000007649) #19	Tmed1 (ENSRNOG00000008037) #20	LOC691141 (ENSRNOG00000033256) #21	Carm1 (ENSRNOG00000031129) #22	Yipf2 (ENSRNOG00000022043) #23	Smarca4 (ENSRNOG00000009271) #25	Ldlr (ENSRNOG00000009946) #26	Spc24 (ENSRNOG00000029862) #27	Kank2 (ENSRNOG00000010643) #28	Dock6 (ENSRNOG00000010652) #29	Angptl8 (ENSRNOG00000011490) #30	Rab3d (ENSRNOG00000011582) #31	Tmem205 (ENSRNOG00000011747) #32	Ccdc159 (ENSRNOG00000011799)	Plppr2 (ENSRNOG00000012164) #33	Swsap1 (ENSRNOG00000012604)	Epor (ENSRNOG00000012619) #34	Odad3 (ENSRNOG00000013263)	Prkcsh (ENSRNOG00000013360) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	850																Carm1 (ENSNGAG00000001362) #22	Yipf2 (ENSNGAG00000010607) #23	Timm29 (ENSNGAG00000016810) #24	Smarca4 (ENSNGAG00000021852) #25	Ldlr (ENSNGAG00000018614) #26	Spc24 (ENSNGAG00000005326) #27	ENSNGAG00000001359 #28	Dock6 (ENSNGAG00000004348) #29	Angptl8 (ENSNGAG00000016227) #30	Rab3d (ENSNGAG00000016962) #31	Tmem205 (ENSNGAG00000017217) #32	Ccdc159 (ENSNGAG00000017828)	Plppr2 (ENSNGAG00000012541) #33	ENSNGAG00000013744	Epor (ENSNGAG00000014154) #34	Rgl3 (ENSNGAG00000015700) #35
Lesser Egyptian jerboa	MODERN SPECIES	143	Tyk2 (ENSJJAG00000020250) #8	Cdc37 (ENSJJAG00000021223) #9	Pde4a (ENSJJAG00000022269) #10	Keap1 (ENSJJAG00000000119) #11	S1pr5 (ENSJJAG00000013383)	Atg4d (ENSJJAG00000000341) #13	Kri1 (ENSJJAG00000002972) #14	Cdkn2d (ENSJJAG00000008566)	Ap1m2 (ENSJJAG00000009862) #15	Slc44a2 (ENSJJAG00000011453) #16	ENSJJAG00000013051 #17	Qtrt1 (ENSJJAG00000013307) #18	Dnm2 (ENSJJAG00000015316) #19	Tmed1 (ENSJJAG00000018485) #20	AB124611 (ENSJJAG00000002332) #21	Carm1 (ENSJJAG00000008047) #22	Yipf2 (ENSJJAG00000010227) #23	Timm29 (ENSJJAG00000010999) #24	Smarca4 (ENSJJAG00000012877) #25	Ldlr (ENSJJAG00000016661) #26	ENSJJAG00000013464	Spc24 (ENSJJAG00000017112) #27	Kank2 (ENSJJAG00000017464) #28	Dock6 (ENSJJAG00000019330) #29	Angptl8 (ENSJJAG00000022577) #30	ENSJJAG00000013629	ENSJJAG00000000215 #31	Tmem205 (ENSJJAG00000000261) #32	Ccdc159 (ENSJJAG00000000427)	Plppr2 (ENSJJAG00000001171) #33	Swsap1 (ENSJJAG00000004050)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00900000143551	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00900000143551	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Eurasian red squirrel	MODERN SPECIES	7	CDC37 (ENSSVLG00005020567) #9	PDE4A (ENSSVLG00005020638) #10	KEAP1 (ENSSVLG00005020889) #11	S1PR5 (ENSSVLG00005020921)	ATG4D (ENSSVLG00005020947) #13	KRI1 (ENSSVLG00005020995) #14	CDKN2D (ENSSVLG00005021167)	ENSSVLG00005021219 #15	SLC44A2 (ENSSVLG00005021433) #16	ENSSVLG00005021542	ILF3 (ENSSVLG00005021649) #17	QTRT1 (ENSSVLG00005021743) #18	DNM2 (ENSSVLG00005021854) #19	TMED1 (ENSSVLG00005022048) #20	C19orf38 (ENSSVLG00005022088) #21	CARM1 (ENSSVLG00005022155) #22	YIPF2 (ENSSVLG00005022404) #23	LDLR (ENSSVLG00005023861) #26	SPC24 (ENSSVLG00005024002) #27	KANK2 (ENSSVLG00005024021) #28	DOCK6 (ENSSVLG00005024084) #29	ANGPTL8 (ENSSVLG00005024122) #30	TSPAN16 (ENSSVLG00005024177)	RAB3D (ENSSVLG00005024280) #31	TMEM205 (ENSSVLG00005024312) #32	CCDC159 (ENSSVLG00005024349)	PLPPR2 (ENSSVLG00005024405) #33	SWSAP1 (ENSSVLG00005024453)	EPOR (ENSSVLG00005024468) #34	RGL3 (ENSSVLG00005024512) #35	ODAD3 (ENSSVLG00005024648)
Marmotini	ANCESTRAL SPECIES	41	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Alpin marmot	MODERN SPECIES	24	TYK2 (ENSMMMG00000017895) #8	CDC37 (ENSMMMG00000017941) #9	PDE4A (ENSMMMG00000017967) #10	KEAP1 (ENSMMMG00000018969) #11	ENSMMMG00000018981	ATG4D (ENSMMMG00000018985) #13	KRI1 (ENSMMMG00000019036) #14	ENSMMMG00000019102	AP1M2 (ENSMMMG00000019106) #15	SLC44A2 (ENSMMMG00000019127) #16	ILF3 (ENSMMMG00000019155) #17	QTRT1 (ENSMMMG00000019561) #18	DNM2 (ENSMMMG00000019573) #19	TMED1 (ENSMMMG00000019775) #20	C19orf38 (ENSMMMG00000019779) #21	CARM1 (ENSMMMG00000019799) #22	YIPF2 (ENSMMMG00000019805) #23	ENSMMMG00000019820 #24	SMARCA4 (ENSMMMG00000019826) #25	LDLR (ENSMMMG00000019891) #26	SPC24 (ENSMMMG00000019947) #27	KANK2 (ENSMMMG00000019957) #28	DOCK6 (ENSMMMG00000019995) #29	ANGPTL8 (ENSMMMG00000020098) #30	TSPAN16 (ENSMMMG00000020105)	RAB3D (ENSMMMG00000020113) #31	TMEM205 (ENSMMMG00000020116) #32	CCDC159 (ENSMMMG00000020119)	PLPPR2 (ENSMMMG00000020126) #33	SWSAP1 (ENSMMMG00000020143)	EPOR (ENSMMMG00000020144) #34
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Arctic ground squirrel	MODERN SPECIES	217	TYK2 (ENSUPAG00010001822) #8	CDC37 (ENSUPAG00010001857) #9	PDE4A (ENSUPAG00010001873) #10	KEAP1 (ENSUPAG00010001991) #11	ENSUPAG00010002004	ATG4D (ENSUPAG00010002014) #13	KRI1 (ENSUPAG00010002031) #14	CDKN2D (ENSUPAG00010002067)	AP1M2 (ENSUPAG00010002081) #15	SLC44A2 (ENSUPAG00010002115) #16	ILF3 (ENSUPAG00010002202) #17	QTRT1 (ENSUPAG00010002480) #18	DNM2 (ENSUPAG00010002497) #19	TMED1 (ENSUPAG00010003125) #20	C19orf38 (ENSUPAG00010003139) #21	CARM1 (ENSUPAG00010003160) #22	YIPF2 (ENSUPAG00010003190) #23	TIMM29 (ENSUPAG00010003216) #24	SMARCA4 (ENSUPAG00010003222) #25	LDLR (ENSUPAG00010003299) #26	SPC24 (ENSUPAG00010003350) #27	KANK2 (ENSUPAG00010003372) #28	DOCK6 (ENSUPAG00010003421) #29	ANGPTL8 (ENSUPAG00010007137) #30	TSPAN16 (ENSUPAG00010007148)	RAB3D (ENSUPAG00010007164) #31	TMEM205 (ENSUPAG00010007186) #32	CCDC159 (ENSUPAG00010007207)	PLPPR2 (ENSUPAG00010007227) #33	SWSAP1 (ENSUPAG00010007321)	EPOR (ENSUPAG00010007323) #34
Squirrel	MODERN SPECIES	259	TYK2 (ENSSTOG00000003264) #8	CDC37 (ENSSTOG00000015962) #9	PDE4A (ENSSTOG00000027947) #10	KEAP1 (ENSSTOG00000010114) #11	S1PR5 (ENSSTOG00000024850)	ATG4D (ENSSTOG00000023750) #13	KRI1 (ENSSTOG00000007660) #14	ENSSTOG00000023338	AP1M2 (ENSSTOG00000007719) #15	SLC44A2 (ENSSTOG00000007737) #16	ILF3 (ENSSTOG00000007786) #17	QTRT1 (ENSSTOG00000020466) #18	DNM2 (ENSSTOG00000007826) #19	TMED1 (ENSSTOG00000023250) #20	C19orf38 (ENSSTOG00000024893) #21	CARM1 (ENSSTOG00000007864) #22	YIPF2 (ENSSTOG00000007905) #23	TIMM29 (ENSSTOG00000026705) #24	SMARCA4 (ENSSTOG00000007939) #25	LDLR (ENSSTOG00000007999) #26	SPC24 (ENSSTOG00000008026) #27	KANK2 (ENSSTOG00000008035) #28	DOCK6 (ENSSTOG00000023652) #29	ANGPTL8 (ENSSTOG00000026191) #30	TSPAN16 (ENSSTOG00000002961)	RAB3D (ENSSTOG00000027509) #31	TMEM205 (ENSSTOG00000005779) #32	CCDC159 (ENSSTOG00000005786)	PLPPR2 (ENSSTOG00000010119) #33	SWSAP1 (ENSSTOG00000002990)	EPOR (ENSSTOG00000002992) #34
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00900000143551	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Naked mole-rat female	MODERN SPECIES	21	PDE4A (ENSHGLG00000015878) #10	KEAP1 (ENSHGLG00000015222) #11	S1PR5 (ENSHGLG00000045386)	ATG4D (ENSHGLG00000007086) #13	KRI1 (ENSHGLG00000015240) #14	CDKN2D (ENSHGLG00000013311)	AP1M2 (ENSHGLG00000017835) #15	ENSHGLG00000044071	SLC44A2 (ENSHGLG00000011332) #16	ENSHGLG00000036847	ENSHGLG00000019494 #17	QTRT1 (ENSHGLG00000018553) #18	DNM2 (ENSHGLG00000014318) #19	TMED1 (ENSHGLG00000034031) #20	C19orf38 (ENSHGLG00000048163) #21	CARM1 (ENSHGLG00000007754) #22	YIPF2 (ENSHGLG00000005585) #23	TIMM29 (ENSHGLG00000031869) #24	SMARCA4 (ENSHGLG00000010519) #25	LDLR (ENSHGLG00000014530) #26	SPC24 (ENSHGLG00000005561) #27	KANK2 (ENSHGLG00000006720) #28	ENSHGLG00000034129 #30	DOCK6 (ENSHGLG00000009688) #29	TSPAN16 (ENSHGLG00000017884)	RAB3D (ENSHGLG00000015577) #31	TMEM205 (ENSHGLG00000014918) #32	ENSHGLG00000040073	PLPPR2 (ENSHGLG00000015100) #33	SWSAP1 (ENSHGLG00000015941)	EPOR (ENSHGLG00000017626) #34
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Guinea pig	MODERN SPECIES	214						ATG4D (ENSCPOG00000010314) #13	KRI1 (ENSCPOG00000010323) #14	CDKN2D (ENSCPOG00000035178)	AP1M2 (ENSCPOG00000026213) #15	SLC44A2 (ENSCPOG00000013720) #16	ILF3 (ENSCPOG00000013726) #17	QTRT1 (ENSCPOG00000025300) #18	DNM2 (ENSCPOG00000002296) #19	TMED1 (ENSCPOG00000033109) #20	C19orf38 (ENSCPOG00000025508) #21	CARM1 (ENSCPOG00000015465) #22	YIPF2 (ENSCPOG00000026134) #23	TIMM29 (ENSCPOG00000031154) #24	SMARCA4 (ENSCPOG00000015549) #25	LDLR (ENSCPOG00000006816) #26	KANK2 (ENSCPOG00000027433) #28	DOCK6 (ENSCPOG00000026620) #29	ANGPTL8 (ENSCPOG00000030760) #30	TSPAN16 (ENSCPOG00000020079)	RAB3D (ENSCPOG00000030555) #31	TMEM205 (ENSCPOG00000026260) #32	ENSCPOG00000005662	PLPPR2 (ENSCPOG00000005664) #33	SWSAP1 (ENSCPOG00000001918)	EPOR (ENSCPOG00000004895) #34	RGL3 (ENSCPOG00000009865) #35
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000159869 #8	ENSGT00390000013443.c #9	ENSGT00940000159788.b #10	ENSGT00940000159543 #11	ENSGT01050000244887.A.a.a.a	ENSGT00530000063000.a.a.b #13	ENSGT00390000005605 #14	ENSGT00940000159801.B	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201	ENSGT00940000158145 #33	ENSGT00390000007170	ENSGT00940000160315 #34
Long-tailed chinchilla	MODERN SPECIES	202	TYK2 (ENSCLAG00000013417) #8	CDC37 (ENSCLAG00000004550) #9	PDE4A (ENSCLAG00000005445) #10	KEAP1 (ENSCLAG00000011003) #11	S1PR5 (ENSCLAG00000011673)	ATG4D (ENSCLAG00000004668) #13	KRI1 (ENSCLAG00000006582) #14	CDKN2D (ENSCLAG00000016365)	AP1M2 (ENSCLAG00000015388) #15	SLC44A2 (ENSCLAG00000017339) #16	ILF3 (ENSCLAG00000011537) #17	QTRT1 (ENSCLAG00000009859) #18	DNM2 (ENSCLAG00000008156) #19	TMED1 (ENSCLAG00000008870) #20	C19orf38 (ENSCLAG00000009782) #21	CARM1 (ENSCLAG00000011012) #22	YIPF2 (ENSCLAG00000011701) #23	TIMM29 (ENSCLAG00000014951) #24	SMARCA4 (ENSCLAG00000011946) #25	LDLR (ENSCLAG00000015453) #26	DOCK6 (ENSCLAG00000015319) #29	ANGPTL8 (ENSCLAG00000007166) #30	TSPAN16 (ENSCLAG00000008629)	RAB3D (ENSCLAG00000007049) #31	TMEM205 (ENSCLAG00000007329) #32	ENSCLAG00000007718	PLPPR2 (ENSCLAG00000008970) #33	SWSAP1 (ENSCLAG00000011027)	EPOR (ENSCLAG00000007667) #34	RGL3 (ENSCLAG00000008655) #35	ODAD3 (ENSCLAG00000008412)
Degu	MODERN SPECIES	91	TYK2 (ENSODEG00000016347) #8	CDC37 (ENSODEG00000016453) #9	PDE4A (ENSODEG00000016246) #10	KEAP1 (ENSODEG00000016128) #11	S1PR5 (ENSODEG00000020555)	ATG4D (ENSODEG00000016344) #13	KRI1 (ENSODEG00000016083) #14	CDKN2D (ENSODEG00000016627)	AP1M2 (ENSODEG00000016673) #15	SLC44A2 (ENSODEG00000016516) #16	ILF3 (ENSODEG00000015951) #17	QTRT1 (ENSODEG00000015894) #18	DNM2 (ENSODEG00000016299) #19	TMED1 (ENSODEG00000016351) #20	C19orf38 (ENSODEG00000015704) #21	CARM1 (ENSODEG00000015950) #22	YIPF2 (ENSODEG00000015957) #23	TIMM29 (ENSODEG00000015866) #24	SMARCA4 (ENSODEG00000017127) #25	LDLR (ENSODEG00000015446) #26	SPC24 (ENSODEG00000016091) #27	KANK2 (ENSODEG00000015842) #28	ANGPTL8 (ENSODEG00000015983) #30	DOCK6 (ENSODEG00000016301) #29	ENSODEG00000015574 #31	TMEM205 (ENSODEG00000016141) #32	ENSODEG00000015784	PLPPR2 (ENSODEG00000018491) #33	SWSAP1 (ENSODEG00000015882)	EPOR (ENSODEG00000015732) #34	RGL3 (ENSODEG00000015605) #35
Lagomorpha	ANCESTRAL SPECIES	331															ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26
Rabbit	MODERN SPECIES	647				PDE4A (ENSOCUG00000001428) #10	KEAP1 (ENSOCUG00000001435) #11	S1PR5 (ENSOCUG00000001437)	ATG4D (ENSOCUG00000014176) #13	KRI1 (ENSOCUG00000014181) #14	AP1M2 (ENSOCUG00000024334) #15	ENSOCUG00000022727	SLC44A2 (ENSOCUG00000015558) #16	ILF3 (ENSOCUG00000013990) #17	QTRT1 (ENSOCUG00000021082) #18	TMED1 (ENSOCUG00000015317) #20	C19orf38 (ENSOCUG00000027943) #21	CARM1 (ENSOCUG00000003368) #22	YIPF2 (ENSOCUG00000003381) #23	TIMM29 (ENSOCUG00000003385) #24	DNM2 (ENSOCUG00000015302) #19	SMARCA4 (ENSOCUG00000001787) #25	LDLR (ENSOCUG00000000651) #26