Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159869 #7	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201 #33	ENSGT00940000158145 #34	ENSGT00390000007170 #35	ENSGT00940000160315 #36	ENSGT00940000161935 #37
Ryukyu mouse	MODERN SPECIES	18	Tyk2 (MGP_CAROLIEiJ_G0031861) #7	Cdc37 (MGP_CAROLIEiJ_G0031862) #8	Pde4a (MGP_CAROLIEiJ_G0031863) #9	Keap1 (MGP_CAROLIEiJ_G0031864) #10	S1pr5 (MGP_CAROLIEiJ_G0031865) #11	Atg4d (MGP_CAROLIEiJ_G0031866) #12	Kri1 (MGP_CAROLIEiJ_G0031867) #13	Cdkn2d (MGP_CAROLIEiJ_G0031868) #14	Ap1m2 (MGP_CAROLIEiJ_G0031869) #15	Slc44a2 (MGP_CAROLIEiJ_G0031870) #16	Ilf3 (MGP_CAROLIEiJ_G0031871) #17	Qtrt1 (MGP_CAROLIEiJ_G0031872) #18	Dnm2 (MGP_CAROLIEiJ_G0031873) #19	Tmed1 (MGP_CAROLIEiJ_G0031874) #20	AB124611 (MGP_CAROLIEiJ_G0031875) #21	Carm1 (MGP_CAROLIEiJ_G0031876) #22	Yipf2 (MGP_CAROLIEiJ_G0031877) #23	Timm29 (MGP_CAROLIEiJ_G0031878) #24	Smarca4 (MGP_CAROLIEiJ_G0031879) #25	Ldlr (MGP_CAROLIEiJ_G0031880) #26	Spc24 (MGP_CAROLIEiJ_G0031881) #27	Kank2 (MGP_CAROLIEiJ_G0031882) #28	MGP_CAROLIEiJ_G0031883 #29	Angptl8 (MGP_CAROLIEiJ_G0031884) #30	Rab3d (MGP_CAROLIEiJ_G0031885) #31	Tmem205 (MGP_CAROLIEiJ_G0031886) #32	Ccdc159 (MGP_CAROLIEiJ_G0031887) #33	Plppr2 (MGP_CAROLIEiJ_G0031888) #34	Swsap1 (MGP_CAROLIEiJ_G0031889) #35	Epor (MGP_CAROLIEiJ_G0031890) #36	Rgl3 (MGP_CAROLIEiJ_G0031891) #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000159869 #7	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201 #33	ENSGT00940000158145 #34	ENSGT00390000007170 #35	ENSGT00940000160315 #36	ENSGT00940000161935 #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000159869 #7	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00940000157552 #31	ENSGT00390000016298.a #32	ENSGT00390000008201 #33	ENSGT00940000158145 #34	ENSGT00390000007170 #35	ENSGT00940000160315 #36	ENSGT00940000161935 #37
spretus	MODERN SPECIES	18	Tyk2 (MGP_SPRETEiJ_G0032985) #7	Cdc37 (MGP_SPRETEiJ_G0032986) #8	Pde4a (MGP_SPRETEiJ_G0032987) #9	Keap1 (MGP_SPRETEiJ_G0032988) #10	S1pr5 (MGP_SPRETEiJ_G0032989) #11	Atg4d (MGP_SPRETEiJ_G0032990) #12	Kri1 (MGP_SPRETEiJ_G0032991) #13	Cdkn2d (MGP_SPRETEiJ_G0032992) #14	Ap1m2 (MGP_SPRETEiJ_G0032993) #15	Slc44a2 (MGP_SPRETEiJ_G0032994) #16	Ilf3 (MGP_SPRETEiJ_G0032995) #17	Qtrt1 (MGP_SPRETEiJ_G0032996) #18	Dnm2 (MGP_SPRETEiJ_G0032997) #19	Tmed1 (MGP_SPRETEiJ_G0032998) #20	AB124611 (MGP_SPRETEiJ_G0032999) #21	Carm1 (MGP_SPRETEiJ_G0033000) #22	Yipf2 (MGP_SPRETEiJ_G0033001) #23	Timm29 (MGP_SPRETEiJ_G0033002) #24	Smarca4 (MGP_SPRETEiJ_G0033003) #25	Ldlr (MGP_SPRETEiJ_G0033004) #26	Spc24 (MGP_SPRETEiJ_G0033005) #27	Kank2 (MGP_SPRETEiJ_G0033006) #28	Dock6 (MGP_SPRETEiJ_G0033007) #29	Angptl8 (MGP_SPRETEiJ_G0033008) #30	Rab3d (MGP_SPRETEiJ_G0033009) #31	Tmem205 (MGP_SPRETEiJ_G0033010) #32	Ccdc159 (MGP_SPRETEiJ_G0033011) #33	Plppr2 (MGP_SPRETEiJ_G0033012) #34	Epor (MGP_SPRETEiJ_G0033013) #36	Rgl3 (MGP_SPRETEiJ_G0033014) #37	Odad3 (MGP_SPRETEiJ_G0033015)
Steppe mouse	MODERN SPECIES	3115	Cdc37 (ENSMSIG00000016922) #8	Pde4a (ENSMSIG00000016751) #9	Keap1 (ENSMSIG00000016713) #10	S1pr5 (ENSMSIG00000016710) #11	Atg4d (ENSMSIG00000016653) #12	Kri1 (ENSMSIG00000016603) #13	Cdkn2d (ENSMSIG00000016582) #14	Ap1m2 (ENSMSIG00000016529) #15	Slc44a2 (ENSMSIG00000016395) #16	Ilf3 (ENSMSIG00000016302) #17	Qtrt1 (ENSMSIG00000016262) #18	Dnm2 (ENSMSIG00000015982) #19	Tmed1 (ENSMSIG00000015965) #20	AB124611 (ENSMSIG00000015890) #21	Yipf2 (ENSMSIG00000015831) #23	Carm1 (ENSMSIG00000015744) #22	Smarca4 (ENSMSIG00000015575) #25	Ldlr (ENSMSIG00000015469) #26	Spc24 (ENSMSIG00000015419) #27	Kank2 (ENSMSIG00000015384) #28	Angptl8 (ENSMSIG00000015367) #30	Dock6 (ENSMSIG00000015052) #29	Rab3d (ENSMSIG00000014980) #31	ENSMSIG00000014964 #32	Ccdc159 (ENSMSIG00000014895) #33	Plppr2 (ENSMSIG00000014788) #34	Swsap1 (ENSMSIG00000014781) #35	ENSMSIG00000014716 #36	ENSMSIG00000013921 #37	Odad3 (ENSMSIG00000013901)	Prkcsh (ENSMSIG00000013805)
Mouse	MODERN SPECIES	18	Tyk2 (ENSMUSG00000032175) #7	Cdc37 (ENSMUSG00000019471) #8	Pde4a (ENSMUSG00000032177) #9	Keap1 (ENSMUSG00000003308) #10	S1pr5 (ENSMUSG00000045087) #11	Atg4d (ENSMUSG00000002820) #12	Kri1 (ENSMUSG00000035047) #13	Cdkn2d (ENSMUSG00000096472) #14	Ap1m2 (ENSMUSG00000003309) #15	Slc44a2 (ENSMUSG00000057193) #16	Ilf3 (ENSMUSG00000032178) #17	Qtrt1 (ENSMUSG00000002825) #18	Dnm2 (ENSMUSG00000033335) #19	Tmed1 (ENSMUSG00000032180) #20	AB124611 (ENSMUSG00000057191) #21	Carm1 (ENSMUSG00000032185) #22	Yipf2 (ENSMUSG00000032182) #23	Timm29 (ENSMUSG00000048429) #24	Smarca4 (ENSMUSG00000032187) #25	Ldlr (ENSMUSG00000032193) #26	Spc24 (ENSMUSG00000074476) #27	Kank2 (ENSMUSG00000032194) #28	Dock6 (ENSMUSG00000032198) #29	Angptl8 (ENSMUSG00000047822) #30	Rab3d (ENSMUSG00000019066) #31	Tmem205 (ENSMUSG00000040883) #32	Ccdc159 (ENSMUSG00000006241) #33	Plppr2 (ENSMUSG00000040563) #34	Swsap1 (ENSMUSG00000051238) #35	Epor (ENSMUSG00000006235) #36	Rgl3 (ENSMUSG00000040146) #37