Bovidae	ANCESTRAL SPECIES		ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00390000003710.d.c.b.b	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338 #31	ENSGT00940000157552 #32	ENSGT00390000016298.a #33	ENSGT00390000008201 #34	ENSGT00940000158145 #35	ENSGT00390000007170 #36	ENSGT00940000160315 #37
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000159869 #7	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541.m #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338 #31	ENSGT00940000157552 #32	ENSGT00390000016298.a #33	ENSGT00390000008201 #34	ENSGT00940000158145 #35	ENSGT00390000007170 #36	ENSGT00940000160315 #37
Rambouillet Sheep	MODERN SPECIES	21	TYK2 (ENSOARG00020004293) #7	CDC37 (ENSOARG00020004409) #8	PDE4A (ENSOARG00020004490) #9	KEAP1 (ENSOARG00020004964) #10	S1PR5 (ENSOARG00020004996) #11	ATG4D (ENSOARG00020005015) #12	KRI1 (ENSOARG00020005100) #13	CDKN2D (ENSOARG00020005338) #14	AP1M2 (ENSOARG00020005364) #15	ENSOARG00020005505 #16	ILF3 (ENSOARG00020005811) #17	QTRT1 (ENSOARG00020006553) #18	DNM2 (ENSOARG00020006664) #19	TMED1 (ENSOARG00020006915) #20	C19orf38 (ENSOARG00020006962) #21	CARM1 (ENSOARG00020007076) #22	YIPF2 (ENSOARG00020007419) #23	TIMM29 (ENSOARG00020007507) #24	SMARCA4 (ENSOARG00020007539) #25	LDLR (ENSOARG00020007651) #26	SPC24 (ENSOARG00020007874) #27	KANK2 (ENSOARG00020007943) #28	DOCK6 (ENSOARG00020008022) #29	ANGPTL8 (ENSOARG00020008452) #30	ENSOARG00020008477 #31	RAB3D (ENSOARG00020008526) #32	TMEM205 (ENSOARG00020008566) #33	CCDC159 (ENSOARG00020008591) #34	PLPPR2 (ENSOARG00020008676) #35	SWSAP1 (ENSOARG00020008767) #36	EPOR (ENSOARG00020008807) #37
Goat	MODERN SPECIES	26	PDE4A (ENSCHIG00000020219) #9	KEAP1 (ENSCHIG00000012093) #10	S1PR5 (ENSCHIG00000013199) #11	ENSCHIG00000018242	ATG4D (ENSCHIG00000017777) #12	KRI1 (ENSCHIG00000011851) #13	CDKN2D (ENSCHIG00000019940) #14	AP1M2 (ENSCHIG00000013386) #15	ENSCHIG00000008328	SLC44A2 (ENSCHIG00000005817) #16	ILF3 (ENSCHIG00000024731) #17	QTRT1 (ENSCHIG00000014137) #18	DNM2 (ENSCHIG00000025917) #19	TMED1 (ENSCHIG00000026595) #20	C19orf38 (ENSCHIG00000016641) #21	CARM1 (ENSCHIG00000008507) #22	YIPF2 (ENSCHIG00000017268) #23	ENSCHIG00000008021 #24	SMARCA4 (ENSCHIG00000015318) #25	LDLR (ENSCHIG00000019614) #26	SPC24 (ENSCHIG00000021502) #27	KANK2 (ENSCHIG00000017311) #28	DOCK6 (ENSCHIG00000017845) #29	ANGPTL8 (ENSCHIG00000017803) #30	TSPAN16 (ENSCHIG00000010405) #31	RAB3D (ENSCHIG00000014720) #32	TMEM205 (ENSCHIG00000007462) #33	CCDC159 (ENSCHIG00000025060) #34	PLPPR2 (ENSCHIG00000008665) #35	SWSAP1 (ENSCHIG00000010252) #36	EPOR (ENSCHIG00000008595) #37
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00390000003710.d.c.b.b	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338 #31	ENSGT00940000157552 #32	ENSGT00390000016298.a #33	ENSGT00390000008201 #34	ENSGT00940000158145 #35	ENSGT00390000007170 #36	ENSGT00940000160315 #37
American bison	MODERN SPECIES	3349	CDC37 (ENSBBBG00000003882) #8	PDE4A (ENSBBBG00000003458) #9	KEAP1 (ENSBBBG00000003432) #10	S1PR5 (ENSBBBG00000003420) #11	ENSBBBG00000003902	ATG4D (ENSBBBG00000015641) #12	KRI1 (ENSBBBG00000015696) #13	CDKN2D (ENSBBBG00000015703) #14	AP1M2 (ENSBBBG00000015730) #15	SLC44A2 (ENSBBBG00000015812) #16	ILF3 (ENSBBBG00000016084) #17	QTRT1 (ENSBBBG00000016137) #18	DNM2 (ENSBBBG00000016364) #19	TMED1 (ENSBBBG00000004053) #20	C19orf38 (ENSBBBG00000004061) #21	CARM1 (ENSBBBG00000016525) #22	YIPF2 (ENSBBBG00000000756) #23	SMARCA4 (ENSBBBG00000017202) #25	LDLR (ENSBBBG00000017534) #26	SPC24 (ENSBBBG00000017574) #27	KANK2 (ENSBBBG00000017612) #28	ANGPTL8 (ENSBBBG00000004365) #30	DOCK6 (ENSBBBG00000017685) #29	TSPAN16 (ENSBBBG00000017704) #31	ENSBBBG00000008561 #32	ENSBBBG00000017753 #33	CCDC159 (ENSBBBG00000017776) #34	PLPPR2 (ENSBBBG00000017792) #35	SWSAP1 (ENSBBBG00000004385) #36	EPOR (ENSBBBG00000017814) #37	RGL3 (ENSBBBG00000017909)
Bos	ANCESTRAL SPECIES	3	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00390000003710.d.c.b.b	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338 #31	ENSGT00940000157552 #32	ENSGT00390000016298.a #33	ENSGT00390000008201 #34	ENSGT00940000158145 #35	ENSGT00390000007170 #36	ENSGT00940000160315 #37
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00390000003710.d.c.b.b	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338 #31	ENSGT00940000157552 #32	ENSGT00390000008201 #34	ENSGT00940000158145 #35	ENSGT00390000007170 #36	ENSGT00940000160315 #37	ENSGT00940000161935
Domestic yak	MODERN SPECIES	27	CDC37 (ENSBGRG00000003152) #8	PDE4A (ENSBGRG00000003241) #9	ENSBGRG00000003338 #10	S1PR5 (ENSBGRG00000003343) #11	ENSBGRG00000003351	ATG4D (ENSBGRG00000003396) #12	KRI1 (ENSBGRG00000003495) #13	CDKN2D (ENSBGRG00000003538) #14	AP1M2 (ENSBGRG00000003553) #15	SLC44A2 (ENSBGRG00000003649) #16	ILF3 (ENSBGRG00000003981) #17	QTRT1 (ENSBGRG00000004106) #18	DNM2 (ENSBGRG00000004270) #19	TMED1 (ENSBGRG00000005206) #20	C19orf38 (ENSBGRG00000005246) #21	CARM1 (ENSBGRG00000005309) #22	YIPF2 (ENSBGRG00000005541) #23	TIMM29 (ENSBGRG00000005681) #24	SMARCA4 (ENSBGRG00000005725) #25	LDLR (ENSBGRG00000005861) #26	SPC24 (ENSBGRG00000010532) #27	KANK2 (ENSBGRG00000010574) #28	DOCK6 (ENSBGRG00000010747) #29	ANGPTL8 (ENSBGRG00000011579) #30	TSPAN16 (ENSBGRG00000011677) #31	RAB3D (ENSBGRG00000011945) #32	ENSBGRG00000012091 #34	PLPPR2 (ENSBGRG00000012325) #35	SWSAP1 (ENSBGRG00000012516) #36	EPOR (ENSBGRG00000012531) #37	ENSBGRG00000012601
Wild yak	MODERN SPECIES	347				S1PR5 (ENSBMUG00000004599) #11	ENSBMUG00000004581	ATG4D (ENSBMUG00000004558) #12	KRI1 (ENSBMUG00000004481) #13	CDKN2D (ENSBMUG00000004379) #14	AP1M2 (ENSBMUG00000004367) #15	SLC44A2 (ENSBMUG00000004323) #16	ILF3 (ENSBMUG00000004135) #17	QTRT1 (ENSBMUG00000003900) #18	DNM2 (ENSBMUG00000003859) #19	TMED1 (ENSBMUG00000003776) #20	C19orf38 (ENSBMUG00000003745) #21	CARM1 (ENSBMUG00000003201) #22	YIPF2 (ENSBMUG00000002282) #23	TIMM29 (ENSBMUG00000002186) #24	SMARCA4 (ENSBMUG00000001526) #25	LDLR (ENSBMUG00000000872) #26	SPC24 (ENSBMUG00000000674) #27	KANK2 (ENSBMUG00000000651) #28	ANGPTL8 (ENSBMUG00000000563) #30	DOCK6 (ENSBMUG00000000545) #29	TSPAN16 (ENSBMUG00000000464) #31	RAB3D (ENSBMUG00000000442) #32	CCDC159 (ENSBMUG00000000394) #34	PLPPR2 (ENSBMUG00000000352) #35	SWSAP1 (ENSBMUG00000000331) #36	EPOR (ENSBMUG00000000317) #37	RGL3 (ENSBMUG00000000298)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000013443.c #8	ENSGT00940000159788.b #9	ENSGT00940000159543 #10	ENSGT01050000244887.A.a.a.a #11	ENSGT00390000003710.d.c.b.b	ENSGT00530000063000.a.a.b #12	ENSGT00390000005605 #13	ENSGT00940000159801.B #14	ENSGT00940000159089 #15	ENSGT00940000158178 #16	ENSGT00940000156719 #17	ENSGT00530000063679.B #18	ENSGT00940000155764.C #19	ENSGT00940000158445 #20	ENSGT00390000008862 #21	ENSGT00940000160377 #22	ENSGT00390000010157.b #23	ENSGT00390000018541 #24	ENSGT00940000156887 #25	ENSGT00940000161046 #26	ENSGT00390000005584 #27	ENSGT00940000161012 #28	ENSGT00940000159313 #29	ENSGT00440000034383 #30	ENSGT00510000049338 #31	ENSGT00940000157552 #32	ENSGT00390000016298.a #33	ENSGT00390000008201 #34	ENSGT00940000158145 #35	ENSGT00390000007170 #36	ENSGT00940000160315 #37
Hybrid Bos Indicus	MODERN SPECIES	26	CDC37 (ENSBIXG00005026794) #8	PDE4A (ENSBIXG00005026880) #9	KEAP1 (ENSBIXG00005026956) #10	S1PR5 (ENSBIXG00005026991) #11	ENSBIXG00005027013	ATG4D (ENSBIXG00005004641) #12	KRI1 (ENSBIXG00005027063) #13	CDKN2D (ENSBIXG00005027099) #14	AP1M2 (ENSBIXG00005027157) #15	SLC44A2 (ENSBIXG00005027228) #16	ILF3 (ENSBIXG00005027423) #17	QTRT1 (ENSBIXG00005027486) #18	DNM2 (ENSBIXG00005027715) #19	TMED1 (ENSBIXG00005027829) #20	C19orf38 (ENSBIXG00005006957) #21	CARM1 (ENSBIXG00005004797) #22	YIPF2 (ENSBIXG00005027965) #23	TIMM29 (ENSBIXG00005004808) #24	SMARCA4 (ENSBIXG00005028150) #25	LDLR (ENSBIXG00005004873) #26	SPC24 (ENSBIXG00005028379) #27	KANK2 (ENSBIXG00005028402) #28	ANGPTL8 (ENSBIXG00005028441) #30	DOCK6 (ENSBIXG00005002467) #29	TSPAN16 (ENSBIXG00005028629) #31	RAB3D (ENSBIXG00005002375) #32	TMEM205 (ENSBIXG00005028717) #33	CCDC159 (ENSBIXG00005028811) #34	PLPPR2 (ENSBIXG00005028866) #35	SWSAP1 (ENSBIXG00005002261) #36	EPOR (ENSBIXG00005028886) #37
Cow	MODERN SPECIES	26	PDE4A (ENSBTAG00000012032) #9	KEAP1 (ENSBTAG00000003543) #10	S1PR5 (ENSBTAG00000003544) #11	ENSBTAG00000051490	ATG4D (ENSBTAG00000010727) #12	KRI1 (ENSBTAG00000010729) #13	CDKN2D (ENSBTAG00000010731) #14	AP1M2 (ENSBTAG00000021160) #15	SLC44A2 (ENSBTAG00000002628) #16	ILF3 (ENSBTAG00000040076) #17	ENSBTAG00000051140	QTRT1 (ENSBTAG00000037941) #18	DNM2 (ENSBTAG00000013362) #19	TMED1 (ENSBTAG00000010968) #20	C7H19orf38 (ENSBTAG00000004224) #21	CARM1 (ENSBTAG00000012048) #22	YIPF2 (ENSBTAG00000025606) #23	TIMM29 (ENSBTAG00000045893) #24	SMARCA4 (ENSBTAG00000019220) #25	LDLR (ENSBTAG00000012314) #26	SPC24 (ENSBTAG00000006185) #27	KANK2 (ENSBTAG00000009568) #28	DOCK6 (ENSBTAG00000009569) #29	ANGPTL8 (ENSBTAG00000009570) #30	RAB3D (ENSBTAG00000002148) #32	TMEM205 (ENSBTAG00000016429) #33	CCDC159 (ENSBTAG00000032292) #34	PLPPR2 (ENSBTAG00000008192) #35	SWSAP1 (ENSBTAG00000008196) #36	EPOR (ENSBTAG00000008197) #37	RGL3 (ENSBTAG00000008198)