Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Glires	ANCESTRAL SPECIES	3	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37	ENSGT00390000018559
Long-tailed chinchilla	MODERN SPECIES	158	TOM1L1 (ENSCLAG00000012206) #7	COX11 (ENSCLAG00000013909) #8	STXBP4 (ENSCLAG00000011711) #9	HLF (ENSCLAG00000013244) #10	MMD (ENSCLAG00000016458) #11	SMIM36 (ENSCLAG00000018044) #12	TMEM100 (ENSCLAG00000014942) #13	PCTP (ENSCLAG00000012326) #14	ANKFN1 (ENSCLAG00000015690) #15	ENSCLAG00000013710 #16	NOG (ENSCLAG00000017798) #17	C17orf67 (ENSCLAG00000015852) #18	DGKE (ENSCLAG00000012917) #19	TRIM25 (ENSCLAG00000017035) #20	ENSCLAG00000014496 #21	SCPEP1 (ENSCLAG00000015159) #22	AKAP1 (ENSCLAG00000015261) #23	MSI2 (ENSCLAG00000014325) #24	MRPS23 (ENSCLAG00000013109) #25	CUEDC1 (ENSCLAG00000012560) #26	VEZF1 (ENSCLAG00000011306) #27	SRSF1 (ENSCLAG00000014707) #28	DYNLL2 (ENSCLAG00000014096) #29	ENSCLAG00000017831 #30	ENSCLAG00000015179 #31	OR4D2 (ENSCLAG00000017866) #32	EPX (ENSCLAG00000015927) #33	MKS1 (ENSCLAG00000016366) #34	LPO (ENSCLAG00000012167) #35	MPO (ENSCLAG00000015465) #36	TSPOAP1 (ENSCLAG00000013352) #37
Degu	MODERN SPECIES	263		ENSODEG00000011833 #8	STXBP4 (ENSODEG00000011379) #9	HLF (ENSODEG00000011608) #10	MMD (ENSODEG00000013055) #11	TMEM100 (ENSODEG00000019916) #13	PCTP (ENSODEG00000014619) #14	ANKFN1 (ENSODEG00000012115) #15	ENSODEG00000012707 #16	NOG (ENSODEG00000020232) #17	C17orf67 (ENSODEG00000013079) #18	DGKE (ENSODEG00000012600) #19	TRIM25 (ENSODEG00000011829) #20	ENSODEG00000012139	COIL (ENSODEG00000012389) #21	SCPEP1 (ENSODEG00000010769) #22	ENSODEG00000011240 #23	TMEM238 (ENSODEG00000011450)	MSI2 (ENSODEG00000011974) #24	ENSODEG00000011449	MRPS23 (ENSODEG00000011027) #25	CUEDC1 (ENSODEG00000011861) #26	VEZF1 (ENSODEG00000011127) #27	SRSF1 (ENSODEG00000011481) #28	DYNLL2 (ENSODEG00000013208) #29	ENSODEG00000019998	OR4D1 (ENSODEG00000019941) #30	OR4D2 (ENSODEG00000019834) #32	ENSODEG00000020120	EPX (ENSODEG00000011351) #33	MKS1 (ENSODEG00000012294) #34
Guinea pig	MODERN SPECIES	53	TOM1L1 (ENSCPOG00000023145) #7	COX11 (ENSCPOG00000008482) #8	STXBP4 (ENSCPOG00000011602) #9	HLF (ENSCPOG00000032087) #10	MMD (ENSCPOG00000039747) #11	SMIM36 (ENSCPOG00000032031) #12	TMEM100 (ENSCPOG00000040096) #13	PCTP (ENSCPOG00000013507) #14	ANKFN1 (ENSCPOG00000004925) #15	NOG (ENSCPOG00000004932) #17	C17orf67 (ENSCPOG00000022723) #18	DGKE (ENSCPOG00000011459) #19	ENSCPOG00000009078	TRIM25 (ENSCPOG00000013452) #20	COIL (ENSCPOG00000001284) #21	SCPEP1 (ENSCPOG00000002870) #22	AKAP1 (ENSCPOG00000013327) #23	MSI2 (ENSCPOG00000034042) #24	CCDC182 (ENSCPOG00000008757)	MRPS23 (ENSCPOG00000008761) #25	CUEDC1 (ENSCPOG00000022982) #26	VEZF1 (ENSCPOG00000002637) #27	SRSF1 (ENSCPOG00000032681) #28	DYNLL2 (ENSCPOG00000039544) #29	OR4D1 (ENSCPOG00000030997) #30	ENSCPOG00000033512 #32	ENSCPOG00000031204 #32	EPX (ENSCPOG00000000506) #33	MKS1 (ENSCPOG00000000507) #34	LPO (ENSCPOG00000023620) #35	MPO (ENSCPOG00000027142) #36
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000039115	HLF (ENSHGLG00000031895) #10	MMD (ENSHGLG00000011695) #11	SMIM36 (ENSHGLG00000047421) #12	TMEM100 (ENSHGLG00000049459) #13	PCTP (ENSHGLG00000013528) #14	ENSHGLG00000001904	ANKFN1 (ENSHGLG00000016659) #15	NOG (ENSHGLG00000048920) #17	C17orf67 (ENSHGLG00000050116) #18	DGKE (ENSHGLG00000014836) #19	ENSHGLG00000033692	ENSHGLG00000036551	TRIM25 (ENSHGLG00000011477) #20	ENSHGLG00000012113 #21	ENSHGLG00000012440 #22	AKAP1 (ENSHGLG00000014384) #23	MSI2 (ENSHGLG00000012444) #24	CCDC182 (ENSHGLG00000037062)	ENSHGLG00000041008	MRPS23 (ENSHGLG00000012208) #25	ENSHGLG00000044611 #26	ENSHGLG00000042495	ENSHGLG00000039867	ENSHGLG00000042780	ENSHGLG00000003819	TMEM11 (ENSHGLG00000005715)	NATD1 (ENSHGLG00000007125)	MAP2K3 (ENSHGLG00000040410)	ENSHGLG00000033829	ENSHGLG00000003535
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000009415	ENSHGLG00000041019	ZAR1L (ENSHGLG00000006253)	BRCA2 (ENSHGLG00000008590)	N4BP2L1 (ENSHGLG00000006971)	ENSHGLG00000039341	ENSHGLG00000018160	PDS5B (ENSHGLG00000006670)	ENSHGLG00000006974	KL (ENSHGLG00000005334)	ENSHGLG00000018786	ENSHGLG00000032772	ENSHGLG00000021355	ENSHGLG00000019417	ENSHGLG00000021428	ENSHGLG00000013996 #22	ENSHGLG00000004608	MAB21L1 (ENSHGLG00000035394)	ENSHGLG00000003756	ENSHGLG00000037090	ENSHGLG00000003703	ENSHGLG00000010793	CCDC169 (ENSHGLG00000032864)	SPG20 (ENSHGLG00000003791)	CCNA1 (ENSHGLG00000002880)	SERTM1 (ENSHGLG00000047070)	RFXAP (ENSHGLG00000004899)	ENSHGLG00000050490	ALG5 (ENSHGLG00000003783)	EXOSC8 (ENSHGLG00000002963)	SUPT20H (ENSHGLG00000013900)
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Squirrel	MODERN SPECIES	90	CA10 (ENSSTOG00000016378)	KIF2B (ENSSTOG00000011516)	ENSSTOG00000012160 #7	STXBP4 (ENSSTOG00000012175) #9	HLF (ENSSTOG00000029018) #10	MMD (ENSSTOG00000016227) #11	SMIM36 (ENSSTOG00000032016) #12	TMEM100 (ENSSTOG00000012336) #13	PCTP (ENSSTOG00000008053) #14	ANKFN1 (ENSSTOG00000010280) #15	ENSSTOG00000019503 #16	NOG (ENSSTOG00000024922) #17	C17orf67 (ENSSTOG00000025271) #18	TRIM25 (ENSSTOG00000009323) #20	COIL (ENSSTOG00000012512) #21	SCPEP1 (ENSSTOG00000009343) #22	AKAP1 (ENSSTOG00000022206) #23	MSI2 (ENSSTOG00000007884) #24	CCDC182 (ENSSTOG00000020529)	MRPS23 (ENSSTOG00000006711) #25	CUEDC1 (ENSSTOG00000002920) #26	VEZF1 (ENSSTOG00000000239) #27	SRSF1 (ENSSTOG00000000243) #28	DYNLL2 (ENSSTOG00000024818) #29	OR4D2 (ENSSTOG00000024883) #32	EPX (ENSSTOG00000009987) #33	MKS1 (ENSSTOG00000009991) #34	LPO (ENSSTOG00000009999) #35	MPO (ENSSTOG00000010013) #36	TSPOAP1 (ENSSTOG00000023162) #37	SUPT4H1 (ENSSTOG00000032338)
Arctic ground squirrel	MODERN SPECIES	358														TRIM25 (ENSUPAG00010015054) #20	COIL (ENSUPAG00010015007) #21	SCPEP1 (ENSUPAG00010014431) #22	AKAP1 (ENSUPAG00010014398) #23	MSI2 (ENSUPAG00010014279) #24	CCDC182 (ENSUPAG00010014275)	MRPS23 (ENSUPAG00010014267) #25	CUEDC1 (ENSUPAG00010014241) #26	VEZF1 (ENSUPAG00010014233) #27	SRSF1 (ENSUPAG00010014203) #28	DYNLL2 (ENSUPAG00010014199) #29	OR4D1 (ENSUPAG00010014195) #30	OR4D2 (ENSUPAG00010014191) #32	EPX (ENSUPAG00010014171) #33	MKS1 (ENSUPAG00010014159) #34	LPO (ENSUPAG00010014144) #35	MPO (ENSUPAG00010014120) #36	TSPOAP1 (ENSUPAG00010014026) #37
Alpin marmot	MODERN SPECIES	42	STXBP4 (ENSMMMG00000020922) #9	HLF (ENSMMMG00000020915) #10	ENSMMMG00000020913	ENSMMMG00000020910	MMD (ENSMMMG00000020888) #11	SMIM36 (ENSMMMG00000020885) #12	TMEM100 (ENSMMMG00000020880) #13	PCTP (ENSMMMG00000020875) #14	ANKFN1 (ENSMMMG00000020855) #15	ENSMMMG00000020845 #16	NOG (ENSMMMG00000020841) #17	C17orf67 (ENSMMMG00000020832) #18	DGKE (ENSMMMG00000020817) #19	TRIM25 (ENSMMMG00000020801) #20	COIL (ENSMMMG00000020795) #21	SCPEP1 (ENSMMMG00000020785) #22	ENSMMMG00000020780	ENSMMMG00000020772 #23	ENSMMMG00000020763 #23	MSI2 (ENSMMMG00000020747) #24	CCDC182 (ENSMMMG00000020744)	MRPS23 (ENSMMMG00000020740) #25	CUEDC1 (ENSMMMG00000020733) #26	VEZF1 (ENSMMMG00000020729) #27	SRSF1 (ENSMMMG00000020693) #28	DYNLL2 (ENSMMMG00000020685) #29	OR4D1 (ENSMMMG00000020679) #30	EPX (ENSMMMG00000020642) #33	MKS1 (ENSMMMG00000020621) #34	LPO (ENSMMMG00000020607) #35	MPO (ENSMMMG00000020576) #36
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	12	TOM1L1 (ENSSVLG00005008148) #7	COX11 (ENSSVLG00005008220) #8	STXBP4 (ENSSVLG00005008281) #9	HLF (ENSSVLG00005008325) #10	ENSSVLG00005008375	MMD (ENSSVLG00005008382) #11	SMIM36 (ENSSVLG00005008407) #12	TMEM100 (ENSSVLG00005008462) #13	PCTP (ENSSVLG00005008497) #14	ANKFN1 (ENSSVLG00005008633) #15	NOG (ENSSVLG00005008960) #17	C17orf67 (ENSSVLG00005008977) #18	DGKE (ENSSVLG00005009005) #19	TRIM25 (ENSSVLG00005009042) #20	ENSSVLG00005009077 #21	ENSSVLG00005009156 #22	ENSSVLG00005009268 #22	AKAP1 (ENSSVLG00005009345) #23	MSI2 (ENSSVLG00005009431) #24	CCDC182 (ENSSVLG00005009670)	MRPS23 (ENSSVLG00005009697) #25	CUEDC1 (ENSSVLG00005009757) #26	VEZF1 (ENSSVLG00005009804) #27	SRSF1 (ENSSVLG00005009909) #28	DYNLL2 (ENSSVLG00005009962) #29	ENSSVLG00005009988	OR4D1 (ENSSVLG00005010018) #30	OR4D2 (ENSSVLG00005010031) #32	EPX (ENSSVLG00005010064) #33	MKS1 (ENSSVLG00005010163) #34	LPO (ENSSVLG00005010342) #35
Eurasian red squirrel	MODERN SPECIES	12	COX11 (ENSSVLG00005008220) #8	STXBP4 (ENSSVLG00005008281) #9	HLF (ENSSVLG00005008325) #10	ENSSVLG00005008375	MMD (ENSSVLG00005008382) #11	SMIM36 (ENSSVLG00005008407) #12	TMEM100 (ENSSVLG00005008462) #13	PCTP (ENSSVLG00005008497) #14	ANKFN1 (ENSSVLG00005008633) #15	NOG (ENSSVLG00005008960) #17	C17orf67 (ENSSVLG00005008977) #18	DGKE (ENSSVLG00005009005) #19	TRIM25 (ENSSVLG00005009042) #20	ENSSVLG00005009077 #21	ENSSVLG00005009156 #22	ENSSVLG00005009268 #22	AKAP1 (ENSSVLG00005009345) #23	MSI2 (ENSSVLG00005009431) #24	CCDC182 (ENSSVLG00005009670)	MRPS23 (ENSSVLG00005009697) #25	CUEDC1 (ENSSVLG00005009757) #26	VEZF1 (ENSSVLG00005009804) #27	SRSF1 (ENSSVLG00005009909) #28	DYNLL2 (ENSSVLG00005009962) #29	ENSSVLG00005009988	OR4D1 (ENSSVLG00005010018) #30	OR4D2 (ENSSVLG00005010031) #32	EPX (ENSSVLG00005010064) #33	MKS1 (ENSSVLG00005010163) #34	LPO (ENSSVLG00005010342) #35	MPO (ENSSVLG00005010554) #36
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Muroidea	ANCESTRAL SPECIES		ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000163180	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Chinese hamster chok1gshd	MODERN SPECIES	33	Cox11 (ENSCGRG00001011330) #8	Stxbp4 (ENSCGRG00001023598) #9	Hlf (ENSCGRG00001013188) #10	Mmd (ENSCGRG00001021487) #11	ENSCGRG00001000174	ENSCGRG00001011423 #12	Tmem100 (ENSCGRG00001011394) #13	Pctp (ENSCGRG00001015293) #14	Ankfn1 (ENSCGRG00001009369) #15	ENSCGRG00001020352 #16	Nog (ENSCGRG00001001979) #17	Gm525 (ENSCGRG00001017334) #18	Dgke (ENSCGRG00001000768) #19	Trim25 (ENSCGRG00001014623) #20	Coil (ENSCGRG00001012212) #21	Scpep1 (ENSCGRG00001000212) #22	Akap1 (ENSCGRG00001005318) #23	ENSCGRG00001010274	Msi2 (ENSCGRG00001013330) #24	Ccdc182 (ENSCGRG00001011932)	Mrps23 (ENSCGRG00001000359) #25	Cuedc1 (ENSCGRG00001006560) #26	Vezf1 (ENSCGRG00001015390) #27	Srsf1 (ENSCGRG00001000670) #28	Dynll2 (ENSCGRG00001021820) #29	Or4d1 (ENSCGRG00001011576) #30	ENSCGRG00001000799 #30	Or4d2 (ENSCGRG00001001106) #32	Or4d2b (ENSCGRG00001012178) #32	Epx (ENSCGRG00001000483) #33	Mks1 (ENSCGRG00001007658) #34
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000163180	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Prairie vole	MODERN SPECIES	15	Kif2b (ENSMOCG00000002849)	Tom1l1 (ENSMOCG00000004415) #7	ENSMOCG00000006989 #8	Stxbp4 (ENSMOCG00000014715) #9	Hlf (ENSMOCG00000002111) #10	Mmd (ENSMOCG00000011224) #11	Tmem100 (ENSMOCG00000021604) #13	Pctp (ENSMOCG00000021810) #14	Ankfn1 (ENSMOCG00000002064) #15	ENSMOCG00000005282 #16	Nog (ENSMOCG00000003140) #17	Gm525 (ENSMOCG00000016021) #18	Dgke (ENSMOCG00000010320) #19	Trim25 (ENSMOCG00000003617) #20	Coil (ENSMOCG00000007272) #21	Scpep1 (ENSMOCG00000004511) #22	Akap1 (ENSMOCG00000010636) #23	Msi2 (ENSMOCG00000005820) #24	Ccdc182 (ENSMOCG00000002863)	Mrps23 (ENSMOCG00000019113) #25	Cuedc1 (ENSMOCG00000004705) #26	Vezf1 (ENSMOCG00000004930) #27	Srsf1 (ENSMOCG00000001996) #28	Dynll2 (ENSMOCG00000003654) #29	Or4d2 (ENSMOCG00000016085) #32	Or4d2b (ENSMOCG00000002393) #32	Epx (ENSMOCG00000022846) #33	Mks1 (ENSMOCG00000004156) #34	Lpo (ENSMOCG00000022975) #35	Mpo (ENSMOCG00000022201) #36	Tspoap1 (ENSMOCG00000019328) #37
Northern American deer mouse	MODERN SPECIES	21	Cox11 (ENSPEMG00000024142) #8	Stxbp4 (ENSPEMG00000001411) #9	Hlf (ENSPEMG00000029046) #10	Mmd (ENSPEMG00000000328) #11	ENSPEMG00000027921 #12	ENSPEMG00000000809	Tmem100 (ENSPEMG00000024664) #13	Pctp (ENSPEMG00000021820) #14	Ankfn1 (ENSPEMG00000022390) #15	ENSPEMG00000021517 #16	Nog (ENSPEMG00000003492) #17	Gm525 (ENSPEMG00000008898) #18	Dgke (ENSPEMG00000023280) #19	Trim25 (ENSPEMG00000022682) #20	Coil (ENSPEMG00000021428) #21	Scpep1 (ENSPEMG00000012655) #22	Akap1 (ENSPEMG00000023415) #23	Msi2 (ENSPEMG00000021793) #24	Ccdc182 (ENSPEMG00000027163)	Mrps23 (ENSPEMG00000016423) #25	Cuedc1 (ENSPEMG00000023605) #26	Vezf1 (ENSPEMG00000015718) #27	Srsf1 (ENSPEMG00000021416) #28	Dynll2 (ENSPEMG00000025500) #29	ENSPEMG00000009410	Or4d1 (ENSPEMG00000030737) #30	Or4d2 (ENSPEMG00000028653) #32	Or4d2b (ENSPEMG00000027910) #32	Epx (ENSPEMG00000018626) #33	Mks1 (ENSPEMG00000009465) #34	ENSPEMG00000015337 #36
Murinae	ANCESTRAL SPECIES	6	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00390000018316.b.a.b.b	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Mus	ANCESTRAL SPECIES	2	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00390000018316.b.a.b.b	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000160240 #7	ENSGT00390000007512.q #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00390000018316.b.a.b.b.a.a.a	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000160240 #7	ENSGT00390000007512.q #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00390000018316.b.a.b.b.a.a.a	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000160240 #7	ENSGT00390000007512.q #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00940000163071 #16	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00390000018316.b.a.b.b.a.a.a	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a.x #32	ENSGT00940000154503.a.w #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36
spretus	MODERN SPECIES	2	Kif2b (MGP_SPRETEiJ_G0017812)	Tom1l1 (MGP_SPRETEiJ_G0017811) #7	Cox11 (MGP_SPRETEiJ_G0017810) #8	Stxbp4 (MGP_SPRETEiJ_G0017809) #9	Hlf (MGP_SPRETEiJ_G0017808) #10	Mmd (MGP_SPRETEiJ_G0017807) #11	Tmem100 (MGP_SPRETEiJ_G0017806) #13	Pctp (MGP_SPRETEiJ_G0017805) #14	MGP_SPRETEiJ_G0017804 #15	MGP_SPRETEiJ_G0017803 #16	Nog (MGP_SPRETEiJ_G0017802) #17	Gm525 (MGP_SPRETEiJ_G0017801) #18	Dgke (MGP_SPRETEiJ_G0017800) #19	Trim25 (MGP_SPRETEiJ_G0017799) #20	Elobl (MGP_SPRETEiJ_G0017798)	Scpep1 (MGP_SPRETEiJ_G0017797) #22	Akap1 (MGP_SPRETEiJ_G0017796) #23	Msi2 (MGP_SPRETEiJ_G0017795) #24	Ccdc182 (MGP_SPRETEiJ_G0017794)	Mrps23 (MGP_SPRETEiJ_G0017793) #25	Cuedc1 (MGP_SPRETEiJ_G0017792) #26	Vezf1 (MGP_SPRETEiJ_G0017791) #27	Srsf1 (MGP_SPRETEiJ_G0017790) #28	Dynll2 (MGP_SPRETEiJ_G0017789) #29	MGP_SPRETEiJ_G0017788 #30	Epx (MGP_SPRETEiJ_G0017787) #33	Mks1 (MGP_SPRETEiJ_G0017786) #34	Lpo (MGP_SPRETEiJ_G0017785) #35	Mpo (MGP_SPRETEiJ_G0017784) #36	Tspoap1 (MGP_SPRETEiJ_G0017783) #37	Supt4a (MGP_SPRETEiJ_G0017782)
Steppe mouse	MODERN SPECIES	2919																Scpep1 (ENSMSIG00000022666) #22	Akap1 (ENSMSIG00000022690) #23	Msi2 (ENSMSIG00000022787) #24	Ccdc182 (ENSMSIG00000022827)	Mrps23 (ENSMSIG00000022835) #25	Cuedc1 (ENSMSIG00000022862) #26	Vezf1 (ENSMSIG00000022871) #27	Srsf1 (ENSMSIG00000022893) #28	Dynll2 (ENSMSIG00000022934) #29	ENSMSIG00000022956
Mouse	MODERN SPECIES	2	Tom1l1 (ENSMUSG00000020541) #7	Cox11 (ENSMUSG00000020544) #8	Stxbp4 (ENSMUSG00000020546) #9	Hlf (ENSMUSG00000003949) #10	Mmd (ENSMUSG00000003948) #11	Smim36 (ENSMUSG00000110344)	Tmem100 (ENSMUSG00000069763) #13	Pctp (ENSMUSG00000020553) #14	Ankfn1 (ENSMUSG00000047773) #15	Nog (ENSMUSG00000048616) #17	Gm525 (ENSMUSG00000072553) #18	Dgke (ENSMUSG00000000276) #19	Trim25 (ENSMUSG00000000275) #20	Coil (ENSMUSG00000033983) #21	Elobl (ENSMUSG00000057534)	Scpep1 (ENSMUSG00000000278) #22	Akap1 (ENSMUSG00000018428) #23	Msi2 (ENSMUSG00000069769) #24	Ccdc182 (ENSMUSG00000034031)	Mrps23 (ENSMUSG00000023723) #25	Cuedc1 (ENSMUSG00000018378) #26	Vezf1 (ENSMUSG00000018377) #27	Srsf1 (ENSMUSG00000018379) #28	Dynll2 (ENSMUSG00000020483) #29	Or4d1 (ENSMUSG00000060787) #30	Or4d2 (ENSMUSG00000093920) #32	Or4d2b (ENSMUSG00000093839) #32	Epx (ENSMUSG00000052234) #33	Mks1 (ENSMUSG00000034121) #34	Lpo (ENSMUSG00000009356) #35	Mpo (ENSMUSG00000009350) #36
Ryukyu mouse	MODERN SPECIES	2	Tom1l1 (MGP_CAROLIEiJ_G0016965) #7	Cox11 (MGP_CAROLIEiJ_G0016964) #8	Stxbp4 (MGP_CAROLIEiJ_G0016963) #9	Hlf (MGP_CAROLIEiJ_G0016962) #10	Mmd (MGP_CAROLIEiJ_G0016961) #11	Tmem100 (MGP_CAROLIEiJ_G0016960) #13	Pctp (MGP_CAROLIEiJ_G0016959) #14	MGP_CAROLIEiJ_G0016958 #15	MGP_CAROLIEiJ_G0016957 #16	Nog (MGP_CAROLIEiJ_G0016956) #17	Gm525 (MGP_CAROLIEiJ_G0016955) #18	Dgke (MGP_CAROLIEiJ_G0016954) #19	Trim25 (MGP_CAROLIEiJ_G0016953) #20	Coil (MGP_CAROLIEiJ_G0016952) #21	MGP_CAROLIEiJ_G0016951	Scpep1 (MGP_CAROLIEiJ_G0016950) #22	Akap1 (MGP_CAROLIEiJ_G0016949) #23	Msi2 (MGP_CAROLIEiJ_G0016948) #24	Ccdc182 (MGP_CAROLIEiJ_G0016947)	Mrps23 (MGP_CAROLIEiJ_G0016946) #25	MGP_CAROLIEiJ_G0016945 #26	Vezf1 (MGP_CAROLIEiJ_G0016944) #27	Srsf1 (MGP_CAROLIEiJ_G0016943) #28	Dynll2 (MGP_CAROLIEiJ_G0016942) #29	MGP_CAROLIEiJ_G0016941 #30	Epx (MGP_CAROLIEiJ_G0016940) #33	Mks1 (MGP_CAROLIEiJ_G0016939) #34	MGP_CAROLIEiJ_G0016938 #35	Mpo (MGP_CAROLIEiJ_G0016937) #36	Tspoap1 (MGP_CAROLIEiJ_G0016936) #37	Supt4a (MGP_CAROLIEiJ_G0016935)
Shrew mouse	MODERN SPECIES	5	Tom1l1 (MGP_PahariEiJ_G0018096) #7	Cox11 (MGP_PahariEiJ_G0018095) #8	Stxbp4 (MGP_PahariEiJ_G0018094) #9	Hlf (MGP_PahariEiJ_G0018093) #10	Mmd (MGP_PahariEiJ_G0018092) #11	Tmem100 (MGP_PahariEiJ_G0018091) #13	Pctp (MGP_PahariEiJ_G0018090) #14	MGP_PahariEiJ_G0018089 #15	MGP_PahariEiJ_G0018088 #16	Nog (MGP_PahariEiJ_G0018087) #17	Gm525 (MGP_PahariEiJ_G0018086) #18	Dgke (MGP_PahariEiJ_G0018085) #19	Trim25 (MGP_PahariEiJ_G0018084) #20	MGP_PahariEiJ_G0018083 #21	MGP_PahariEiJ_G0018082	MGP_PahariEiJ_G0018081 #22	Akap1 (MGP_PahariEiJ_G0018080) #23	Msi2 (MGP_PahariEiJ_G0018079) #24	Ccdc182 (MGP_PahariEiJ_G0018078)	Mrps23 (MGP_PahariEiJ_G0018077) #25	Cuedc1 (MGP_PahariEiJ_G0018076) #26	Vezf1 (MGP_PahariEiJ_G0018075) #27	Srsf1 (MGP_PahariEiJ_G0018074) #28	Dynll2 (MGP_PahariEiJ_G0018073) #29	Or4d1 (MGP_PahariEiJ_G0018072) #30	MGP_PahariEiJ_G0018071 #32	MGP_PahariEiJ_G0018070 #32	Epx (MGP_PahariEiJ_G0018069) #33	Mks1 (MGP_PahariEiJ_G0018068) #34	Lpo (MGP_PahariEiJ_G0018067) #35	Mpo (MGP_PahariEiJ_G0018066) #36
Rat	MODERN SPECIES	1	Hlf (ENSRNOG00000067479) #10	Mmd (ENSRNOG00000002436) #11	Smim36 (ENSRNOG00000069860) #12	Tmem100 (ENSRNOG00000002434) #13	Pctp (ENSRNOG00000002425) #14	Ankfn1 (ENSRNOG00000064511) #15	Nog (ENSRNOG00000023683) #17	C10h17orf67 (ENSRNOG00000064206) #18	Dgke (ENSRNOG00000002338) #19	Trim25 (ENSRNOG00000002341) #20	Coil (ENSRNOG00000000244) #21	RGD1562272 (ENSRNOG00000027511)	AC119015.2 (ENSRNOG00000029479)	Elob-ps4 (ENSRNOG00000067144)	AC119015.3 (ENSRNOG00000034060)	Scpep1 (ENSRNOG00000002358) #22	Akap1 (ENSRNOG00000002373) #23	Msi2 (ENSRNOG00000025338) #24	Ccdc182 (ENSRNOG00000068230)	Mrps23 (ENSRNOG00000010363) #25	Cuedc1 (ENSRNOG00000010257) #26	Vezf1 (ENSRNOG00000009819) #27	Srsf1 (ENSRNOG00000050323) #28	Dynll2 (ENSRNOG00000008921)	Olr1523 (ENSRNOG00000066422) #30	Or4d2b (ENSRNOG00000030521) #32	Or4d2b (ENSRNOG00000067043) #32	Epx (ENSRNOG00000008707) #33	Mks1 (ENSRNOG00000008635) #34	Lpo (ENSRNOG00000008422) #35	Mpo (ENSRNOG00000008310) #36
Lesser Egyptian jerboa	MODERN SPECIES	180	Tom1l1 (ENSJJAG00000016468) #7	ENSJJAG00000015825 #8	Stxbp4 (ENSJJAG00000015241) #9	Hlf (ENSJJAG00000014709) #10	ENSJJAG00000013972 #11	Tmem100 (ENSJJAG00000013082) #13	Pctp (ENSJJAG00000000610) #14	Ankfn1 (ENSJJAG00000000109) #15	ENSJJAG00000023126	ENSJJAG00000023053 #16	Nog (ENSJJAG00000013985) #17	Gm525 (ENSJJAG00000022695) #18	Dgke (ENSJJAG00000022410) #19	Trim25 (ENSJJAG00000021683) #20	Coil (ENSJJAG00000021225) #21	Scpep1 (ENSJJAG00000020526) #22	Akap1 (ENSJJAG00000010284) #23	ENSJJAG00000009789	ENSJJAG00000009467 #24	ENSJJAG00000006292 #24	Ccdc182 (ENSJJAG00000013314)	Mrps23 (ENSJJAG00000002424) #25	Cuedc1 (ENSJJAG00000000173) #26	Vezf1 (ENSJJAG00000000454) #27	Srsf1 (ENSJJAG00000000102) #28	Dynll2 (ENSJJAG00000023720) #29	Epx (ENSJJAG00000023171) #33	Mks1 (ENSJJAG00000022635) #34	Lpo (ENSJJAG00000021413) #35	Mpo (ENSJJAG00000020363) #36	Tspoap1 (ENSJJAG00000014589) #37
Kangaroo rat	MODERN SPECIES	326	Car10 (ENSDORG00000011701)	ENSDORG00000029230	Tom1l1 (ENSDORG00000001206) #7	Stxbp4 (ENSDORG00000015457) #9	Hlf (ENSDORG00000026285) #10	Mmd (ENSDORG00000026049) #11	Tmem100 (ENSDORG00000028016) #13	Pctp (ENSDORG00000012691) #14	Ankfn1 (ENSDORG00000007824) #15	ENSDORG00000028536 #16	Nog (ENSDORG00000029051) #17	Gm525 (ENSDORG00000000733) #18	Dgke (ENSDORG00000004135) #19	Trim25 (ENSDORG00000012159) #20	Coil (ENSDORG00000027289) #21	Scpep1 (ENSDORG00000003013) #22	Akap1 (ENSDORG00000030157) #23	ENSDORG00000028440 #24	ENSDORG00000005394 #24	Ccdc182 (ENSDORG00000005396)	Mrps23 (ENSDORG00000026921) #25	Cuedc1 (ENSDORG00000012960) #26	Vezf1 (ENSDORG00000023466) #27	Srsf1 (ENSDORG00000015082) #28	Dynll2 (ENSDORG00000025624) #29	ENSDORG00000026736	Gprc5c (ENSDORG00000005420)	Gpr142 (ENSDORG00000003063)	Btbd17 (ENSDORG00000030071)	Kif19a (ENSDORG00000019849)	ENSDORG00000003288
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000163180	ENSGT00940000160240 #7	ENSGT00390000007512 #8	ENSGT00390000002226 #9	ENSGT00940000156555 #10	ENSGT00940000157428 #11	ENSGT00980000198588 #12	ENSGT00940000154322.A #13	ENSGT00940000156843 #14	ENSGT00940000159856 #15	ENSGT00390000006009.a.a.a #17	ENSGT00390000006555 #18	ENSGT00940000158604 #19	ENSGT00940000160741 #20	ENSGT00390000004832 #21	ENSGT00940000156193 #22	ENSGT00390000001360 #23	ENSGT00940000155420.b #24	ENSGT00390000014787	ENSGT00390000009030 #25	ENSGT00390000006762 #26	ENSGT00940000155932 #27	ENSGT00940000155585 #28	ENSGT00390000000378.d.a #29	ENSGT00940000154503.b #30	ENSGT00940000154503.a #32	ENSGT00940000156009.A #33	ENSGT00510000047471 #34	ENSGT00940000160488 #35	ENSGT00940000161343 #36	ENSGT00950000183203.d.g #37
Rabbit	MODERN SPECIES	10	ENSOCUG00000008462 #7	COX11 (ENSOCUG00000008473) #8	STXBP4 (ENSOCUG00000008478) #9	HLF (ENSOCUG00000010547) #10	MMD (ENSOCUG00000010549) #11	SMIM36 (ENSOCUG00000032098) #12	TMEM100 (ENSOCUG00000026610) #13	PCTP (ENSOCUG00000008956) #14	ENSOCUG00000030404	ANKFN1 (ENSOCUG00000001342) #15	NOG (ENSOCUG00000010678) #17	C17orf67 (ENSOCUG00000026474) #18	DGKE (ENSOCUG00000012800) #19	ENSOCUG00000011338 #20	COIL (ENSOCUG00000011345) #21	SCPEP1 (ENSOCUG00000011355) #22	AKAP1 (ENSOCUG00000017563) #23	MSI2 (ENSOCUG00000010440) #24	CCDC182 (ENSOCUG00000003346)	MRPS23 (ENSOCUG00000003350) #25	CUEDC1 (ENSOCUG00000003354) #26	VEZF1 (ENSOCUG00000017673) #27	ENSOCUG00000017678 #28	DYNLL2 (ENSOCUG00000016563) #29	OR4D1 (ENSOCUG00000011022) #30	OR4D2 (ENSOCUG00000010006) #32	EPX (ENSOCUG00000010009) #33	MKS1 (ENSOCUG00000010018) #34	LPO (ENSOCUG00000009698) #35	MPO (ENSOCUG00000006526) #36	TSPOAP1 (ENSOCUG00000009705) #37
Pika	MODERN SPECIES	4712													ENSOPRG00000018736 #18	ENSOPRG00000016449 #20	ENSOPRG00000016463 #21	SCPEP1 (ENSOPRG00000016473) #22	ENSOPRG00000016488 #23
Tree shrew	MODERN SPECIES	4297															COIL (ENSTBEG00000008882) #21	SCPEP1 (ENSTBEG00000009307) #22	AKAP1 (ENSTBEG00000009492) #23	MSI2 (ENSTBEG00000001241) #24	ENSTBEG00000002653