Murinae	ANCESTRAL SPECIES	21	ENSGT00940000158148	ENSGT00530000063168.a.a.a #7	ENSGT00940000157161.b #8	ENSGT00940000158892.b #9	ENSGT00390000016408 #10	ENSGT00390000006976 #11	ENSGT00940000159597 #12	ENSGT00940000154471.a.b.a.a #13	ENSGT00390000010053 #14	ENSGT00390000011897 #15	ENSGT00940000159941 #17	ENSGT00940000157444 #18	ENSGT00940000160986 #19	ENSGT00940000157238 #20	ENSGT00390000004860 #21	ENSGT00550000074921 #22	ENSGT00940000160886.o.b.b.a	ENSGT00950000183043.a.b.b.a.a.b.p.b #23	ENSGT00950000183043.a.b.b.a.a.b.p.a.a.b #28	ENSGT00410000025793.b #27	ENSGT00900000143482 #26	ENSGT00940000162955 #25	ENSGT00950000182925.D.a.a.b.a #29	ENSGT00940000161260 #30	ENSGT01050000244887.A.b.b #31	ENSGT00950000182870.a.a.a.b #32	ENSGT00950000182971.C #33	ENSGT00490000043356.b #34	ENSGT00390000013795	ENSGT00940000159594 #35	ENSGT00950000182964.a.b.a #36
Mus	ANCESTRAL SPECIES	18	ENSGT00940000158148	ENSGT00530000063168.a.a.a #7	ENSGT00940000157161.b #8	ENSGT00940000158892.b #9	ENSGT00390000016408 #10	ENSGT00390000006976 #11	ENSGT00940000159597 #12	ENSGT00940000154471.a.b.a.a #13	ENSGT00390000010053 #14	ENSGT00390000011897 #15	ENSGT00940000159941 #17	ENSGT00940000157444 #18	ENSGT00940000160986 #19	ENSGT00940000157238 #20	ENSGT00390000004860 #21	ENSGT00550000074921 #22	ENSGT00940000162955 #25	ENSGT00900000143482 #26	ENSGT00410000025793.b #27	ENSGT00950000183043.a.b.b.a.a.b.p.a.a.b #28	ENSGT00950000182925.D.a.a.b.a #29	ENSGT00940000161260 #30	ENSGT01050000244887.A.b.b #31	ENSGT00950000182870.a.a.a.b #32	ENSGT00950000182971.C #33	ENSGT00490000043356.b #34	ENSGT00390000013795	ENSGT00940000159594 #35	ENSGT00950000182964.a.b.a #36	ENSGT00940000158196 #37	ENSGT00940000159053
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000158148	ENSGT00530000063168.a.a.a #7	ENSGT00940000157161.b #8	ENSGT00940000158892.b #9	ENSGT00390000016408 #10	ENSGT00390000006976 #11	ENSGT00940000159597 #12	ENSGT00940000154471.a.b.a.a #13	ENSGT00390000010053 #14	ENSGT00390000011897 #15	ENSGT00940000159941 #17	ENSGT00940000157444 #18	ENSGT00940000160986 #19	ENSGT00940000157238 #20	ENSGT00390000004860 #21	ENSGT00550000074921 #22	ENSGT00940000162955 #25	ENSGT00900000143482 #26	ENSGT00410000025793.b #27	ENSGT00950000183043.a.b.b.a.a.b.p.a.a.b #28	ENSGT00950000182925.D.a.a.b.a #29	ENSGT00940000161260 #30	ENSGT01050000244887.A.b.b #31	ENSGT00950000182870.a.a.a.b #32	ENSGT00950000182971.C #33	ENSGT00490000043356.b #34	ENSGT00390000013795	ENSGT00940000159594 #35	ENSGT00950000182964.a.b.a #36	ENSGT00940000158196 #37	ENSGT00940000159053
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000158148	ENSGT00530000063168.a.a.a #7	ENSGT00940000157161.b #8	ENSGT00940000158892.b #9	ENSGT00390000016408 #10	ENSGT00390000006976 #11	ENSGT00940000159597 #12	ENSGT00940000154471.a.b.a.a #13	ENSGT00390000010053 #14	ENSGT00390000011897 #15	ENSGT00940000159941 #17	ENSGT00940000157444 #18	ENSGT00940000160986 #19	ENSGT00940000157238 #20	ENSGT00390000004860 #21	ENSGT00550000074921 #22	ENSGT00940000160886.o.b.b.a	ENSGT00950000183043.a.b.b.a.a.b.p.b #23	ENSGT00940000162955 #25	ENSGT00900000143482 #26	ENSGT00410000025793.b #27	ENSGT00950000183043.a.b.b.a.a.b.p.a.a.b #28	ENSGT00950000182925.D.a.a.b.a.c #29	ENSGT00940000161260 #30	ENSGT01050000244887.A.b.b #31	ENSGT00950000182870.a.a.a.b #32	ENSGT00950000182971.C #33	ENSGT00490000043356.b #34	ENSGT00390000013795	ENSGT00940000159594 #35	ENSGT00950000182964.a.b.a #36
Mouse	MODERN SPECIES	4	Fam120a (ENSMUSG00000038014) #7	Wnk2 (ENSMUSG00000037989) #8	Ninj1 (ENSMUSG00000037966) #9	Card19 (ENSMUSG00000037960) #10	Susd3 (ENSMUSG00000021384) #11	Fgd3 (ENSMUSG00000037946) #12	Bicd2 (ENSMUSG00000037933) #13	Ippk (ENSMUSG00000021385) #14	Cenpp (ENSMUSG00000021391) #15	Tes3-ps (ENSMUSG00000113255) #16	Ecm2 (ENSMUSG00000043631) #17	Aspn (ENSMUSG00000021388) #18	Omd (ENSMUSG00000048368) #19	Ogn (ENSMUSG00000021390) #20	Nol8 (ENSMUSG00000021392) #21	Iars (ENSMUSG00000037851) #22	Gm30302 (ENSMUSG00000114073) #23	Gm906 (ENSMUSG00000095300) #24	Fbxw17 (ENSMUSG00000037816) #25	Gm47429 (ENSMUSG00000114559) #26	Nutm2 (ENSMUSG00000071909) #27	Gm8765 (ENSMUSG00000094918) #28	Spin1 (ENSMUSG00000021395) #29	Nxnl2 (ENSMUSG00000021396) #30	S1pr3 (ENSMUSG00000067586) #31	Shc3 (ENSMUSG00000021448) #32	Cks2 (ENSMUSG00000062248) #33	Secisbp2 (ENSMUSG00000035139) #34	Sema4d (ENSMUSG00000021451) #35	Gadd45g (ENSMUSG00000021453) #36	Diras2 (ENSMUSG00000047842) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000158148	ENSGT00530000063168.a.a.a #7	ENSGT00940000157161.b #8	ENSGT00940000158892.b #9	ENSGT00390000016408 #10	ENSGT00390000006976 #11	ENSGT00940000159597 #12	ENSGT00940000154471.a.b.a.a #13	ENSGT00390000010053 #14	ENSGT00390000011897 #15	ENSGT00940000159941 #17	ENSGT00940000157444 #18	ENSGT00940000160986 #19	ENSGT00940000157238 #20	ENSGT00390000004860 #21	ENSGT00550000074921 #22	ENSGT00940000160886.o.b.b.a	ENSGT00950000183043.a.b.b.a.a.b.p.b #23	ENSGT00940000162955 #25	ENSGT00900000143482 #26	ENSGT00410000025793.b #27	ENSGT00950000182925.D.a.a.b.a.c #29	ENSGT00940000161260 #30	ENSGT01050000244887.A.b.b #31	ENSGT00950000182870.a.a.a.b #32	ENSGT00950000182971.C #33	ENSGT00490000043356.b #34	ENSGT00390000013795	ENSGT00940000159594 #35	ENSGT00950000182964.a.b.a #36	ENSGT00940000158196 #37
Steppe mouse	MODERN SPECIES	2837	Phf2 (ENSMSIG00000028741)	Fam120a (ENSMSIG00000028729) #7	ENSMSIG00000028727	Wnk2 (ENSMSIG00000028566) #8	Ninj1 (ENSMSIG00000028552) #9	Card19 (ENSMSIG00000028541) #10	Susd3 (ENSMSIG00000028527) #11	Fgd3 (ENSMSIG00000028505) #12	ENSMSIG00000028455 #13	Ecm2 (ENSMSIG00000028453) #17	Aspn (ENSMSIG00000028447) #18	Omd (ENSMSIG00000028437) #19	Ogn (ENSMSIG00000028431) #20	Cenpp (ENSMSIG00000028427) #15	Nol8 (ENSMSIG00000028399) #21	Iars (ENSMSIG00000028292) #22	ENSMSIG00000028288	ENSMSIG00000028284	Gm30302 (ENSMSIG00000028279) #23
spretus	MODERN SPECIES	4	Phf2 (MGP_SPRETEiJ_G0019375)	Fam120a (MGP_SPRETEiJ_G0019376) #7	Wnk2 (MGP_SPRETEiJ_G0019377) #8	Ninj1 (MGP_SPRETEiJ_G0019378) #9	Card19 (MGP_SPRETEiJ_G0019379) #10	Susd3 (MGP_SPRETEiJ_G0019380) #11	Fgd3 (MGP_SPRETEiJ_G0019381) #12	Bicd2 (MGP_SPRETEiJ_G0019382) #13	Ippk (MGP_SPRETEiJ_G0019383) #14	Cenpp (MGP_SPRETEiJ_G0019384) #15	Ecm2 (MGP_SPRETEiJ_G0019385) #17	Aspn (MGP_SPRETEiJ_G0019386) #18	Omd (MGP_SPRETEiJ_G0019387) #19	Ogn (MGP_SPRETEiJ_G0019388) #20	Nol8 (MGP_SPRETEiJ_G0019389) #21	Iars (MGP_SPRETEiJ_G0019390) #22	MGP_SPRETEiJ_G0019391	Fbxw17 (MGP_SPRETEiJ_G0019392) #25	Nutm2 (MGP_SPRETEiJ_G0019393) #27	Spin1 (MGP_SPRETEiJ_G0019394) #29	Nxnl2 (MGP_SPRETEiJ_G0019395) #30	S1pr3 (MGP_SPRETEiJ_G0019396) #31	MGP_SPRETEiJ_G0019397 #32	Cks2 (MGP_SPRETEiJ_G0019398) #33	Secisbp2 (MGP_SPRETEiJ_G0019399) #34	MGP_SPRETEiJ_G0019400	Sema4d (MGP_SPRETEiJ_G0019401) #35	Gadd45g (MGP_SPRETEiJ_G0019402) #36	Syk (MGP_SPRETEiJ_G0019403)	Auh (MGP_SPRETEiJ_G0019404)	Nfil3 (MGP_SPRETEiJ_G0019405)
Ryukyu mouse	MODERN SPECIES	4	Phf2 (MGP_CAROLIEiJ_G0018495)	Fam120a (MGP_CAROLIEiJ_G0018496) #7	Wnk2 (MGP_CAROLIEiJ_G0018497) #8	Ninj1 (MGP_CAROLIEiJ_G0018498) #9	Card19 (MGP_CAROLIEiJ_G0018499) #10	Susd3 (MGP_CAROLIEiJ_G0018500) #11	Fgd3 (MGP_CAROLIEiJ_G0018501) #12	Bicd2 (MGP_CAROLIEiJ_G0018502) #13	Ippk (MGP_CAROLIEiJ_G0018503) #14	Cenpp (MGP_CAROLIEiJ_G0018504) #15	Ecm2 (MGP_CAROLIEiJ_G0018505) #17	Aspn (MGP_CAROLIEiJ_G0018506) #18	Omd (MGP_CAROLIEiJ_G0018507) #19	Ogn (MGP_CAROLIEiJ_G0018508) #20	Nol8 (MGP_CAROLIEiJ_G0018509) #21	Iars (MGP_CAROLIEiJ_G0018510) #22	Fbxw17 (MGP_CAROLIEiJ_G0018511) #25	Nutm2 (MGP_CAROLIEiJ_G0018512) #27	Spin1 (MGP_CAROLIEiJ_G0018513) #29	Nxnl2 (MGP_CAROLIEiJ_G0018514) #30	S1pr3 (MGP_CAROLIEiJ_G0018515) #31	MGP_CAROLIEiJ_G0018516 #32	Cks2 (MGP_CAROLIEiJ_G0018517) #33	Secisbp2 (MGP_CAROLIEiJ_G0018518) #34	MGP_CAROLIEiJ_G0018519	Sema4d (MGP_CAROLIEiJ_G0018520) #35	Gadd45g (MGP_CAROLIEiJ_G0018521) #36	Diras2 (MGP_CAROLIEiJ_G0018522) #37	Syk (MGP_CAROLIEiJ_G0018523)	Auh (MGP_CAROLIEiJ_G0018524)	Nfil3 (MGP_CAROLIEiJ_G0018525)
Shrew mouse	MODERN SPECIES	7	Barx1 (MGP_PahariEiJ_G0019561)	Fam120a (MGP_PahariEiJ_G0019562) #7	Wnk2 (MGP_PahariEiJ_G0019563) #8	MGP_PahariEiJ_G0019564 #9	Card19 (MGP_PahariEiJ_G0019565) #10	Susd3 (MGP_PahariEiJ_G0019566) #11	Fgd3 (MGP_PahariEiJ_G0019567) #12	Bicd2 (MGP_PahariEiJ_G0019568) #13	Ippk (MGP_PahariEiJ_G0019569) #14	Cenpp (MGP_PahariEiJ_G0019570) #15	Ecm2 (MGP_PahariEiJ_G0019571) #17	Aspn (MGP_PahariEiJ_G0019572) #18	Omd (MGP_PahariEiJ_G0019573) #19	Ogn (MGP_PahariEiJ_G0019574) #20	Nol8 (MGP_PahariEiJ_G0019575) #21	Iars (MGP_PahariEiJ_G0019576) #22	Fbxw17 (MGP_PahariEiJ_G0019577) #25	Nutm2 (MGP_PahariEiJ_G0019578) #27	Spin1 (MGP_PahariEiJ_G0019579) #29	Nxnl2 (MGP_PahariEiJ_G0019580) #30	S1pr3 (MGP_PahariEiJ_G0019581) #31	MGP_PahariEiJ_G0019582 #32	Cks2 (MGP_PahariEiJ_G0019583) #33	Secisbp2 (MGP_PahariEiJ_G0019584) #34	MGP_PahariEiJ_G0019585	Sema4d (MGP_PahariEiJ_G0019586) #35	Gadd45g (MGP_PahariEiJ_G0019587) #36	Diras2 (MGP_PahariEiJ_G0019588) #37	Syk (MGP_PahariEiJ_G0019589)	Auh (MGP_PahariEiJ_G0019590)	Nfil3 (MGP_PahariEiJ_G0019591)
Rat	MODERN SPECIES	8	Ninj1 (ENSRNOG00000016587) #9	Card19 (ENSRNOG00000016560) #10	Susd3 (ENSRNOG00000016525) #11	Fgd3 (ENSRNOG00000016225) #12	Bicd2 (ENSRNOG00000016031) #13	LOC100361933 (ENSRNOG00000062272)	Ippk (ENSRNOG00000015631) #14	Ecm2 (ENSRNOG00000031716) #17	Rpl6-ps6 (ENSRNOG00000055942)	Aspn (ENSRNOG00000015410) #18	Omd (ENSRNOG00000039560) #19	Ogn (ENSRNOG00000029792) #20	Cenpp (ENSRNOG00000062220) #15	Nol8 (ENSRNOG00000046968) #21	ENSRNOG00000066521	Iars1 (ENSRNOG00000014616) #22	AABR07072539.5 (ENSRNOG00000060029)	ENSRNOG00000070712 #23	LOC689569 (ENSRNOG00000039574) ##28	LOC102549716 (ENSRNOG00000068535)	LOC689526 (ENSRNOG00000066063) #28	ENSRNOG00000066214	AABR07027141.1 (ENSRNOG00000061738) ##28	Spata31c2 (ENSRNOG00000048372) ##28	LOC689458 (ENSRNOG00000067853) #28	ENSRNOG00000067613	LOC689437 (ENSRNOG00000069318) ##28	LOC102548031 (ENSRNOG00000061064) ##28	Nutm2f (ENSRNOG00000027311) #27	Fbxw17 (ENSRNOG00000030027) #25	LOC689303 (ENSRNOG00000063490) #28