Gnathostomata	ANCESTRAL SPECIES	892															ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20
Euteleostomi	ANCESTRAL SPECIES	150	ENSGT00950000182971.B.b	ENSGT00390000007266	ENSGT00940000161355	ENSGT00940000159919	ENSGT00390000007801	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20
Sarcopterygii	ANCESTRAL SPECIES	299					ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00390000008859.b.c #15	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20
Tetrapoda	ANCESTRAL SPECIES	41	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00940000164105	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT01050000244841.A.a.b	ENSGT00730000111185	ENSGT00390000005869.a	ENSGT00390000014273.b	ENSGT00950000185785	ENSGT00940000164158.A	ENSGT00940000164422	ENSGT00940000158423	ENSGT00940000157203	ENSGT00390000002799
Amniota	ANCESTRAL SPECIES	28	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00940000164105	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Mammalia	ANCESTRAL SPECIES	25	ENSGT00390000007801	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Theria	ANCESTRAL SPECIES	3	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Eutheria	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Primates	ANCESTRAL SPECIES	7	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141074.e.b ##16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.k.b	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a.e	ENSGT00390000009464.k.b.a	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a.e	ENSGT00390000009464.k.b.a	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000159283.d #10	ENSGT00950000182919.B.a.e	ENSGT00390000009464.k.b.a	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00530000064067.h #20	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.g.a ##20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000009464.k.b.a	ENSGT00390000009464.k.b.b	ENSGT00940000167808	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00530000064067.h #20	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.g.a ##20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Olive baboon	MODERN SPECIES		ENSPANG00000049525 #7	ENSPANG00000038734 #8	ENSPANG00000043087 #9	ENSPANG00000050000 #10	ENTREP3 (ENSPANG00000004649) #11	SCAMP3 (ENSPANG00000011708) #12	CLK2 (ENSPANG00000024992) #13	HCN3 (ENSPANG00000024684) #14	PKLR (ENSPANG00000022417) #15	FDPS (ENSPANG00000024920) #16	RUSC1 (ENSPANG00000006655) #17	ENSPANG00000045760 #18	ASH1L (ENSPANG00000004959) #19	MSTO1 (ENSPANG00000006654) #20	YY1AP1 (ENSPANG00000029721) #21	DAP3 (ENSPANG00000001758) #22	GON4L (ENSPANG00000011456) #23	SYT11 (ENSPANG00000018152) #24	RIT1 (ENSPANG00000035332) #25	KHDC4 (ENSPANG00000011455) #26	ENSPANG00000004167 #27	ARHGEF2 (ENSPANG00000006851) #28	SSR2 (ENSPANG00000005571) #29	UBQLN4 (ENSPANG00000001757) #30	LAMTOR2 (ENSPANG00000032414) #31	RAB25 (ENSPANG00000003113) #32	MEX3A (ENSPANG00000020303) #33	LMNA (ENSPANG00000003882) #34	SEMA4A (ENSPANG00000016075) #35	ENSPANG00000041668 #36	SLC25A44 (ENSPANG00000008735) #37
Cercopithecinae_d	ANCESTRAL SPECIES	33															ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.g.a ##20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Drill	MODERN SPECIES	642															YY1AP1 (ENSMLEG00000033207) #21	DAP3 (ENSMLEG00000035314) #22
Sooty mangabey	MODERN SPECIES	226															YY1AP1 (ENSCATG00000042138) #21	DAP3 (ENSCATG00000037832) #22	MSTO1 (ENSCATG00000041352) ##20	GON4L (ENSCATG00000031497) #23	SYT11 (ENSCATG00000038729) #24	RIT1 (ENSCATG00000045033) #25	KHDC4 (ENSCATG00000034662) #26	RXFP4 (ENSCATG00000019172)	ARHGEF2 (ENSCATG00000029542) #28	SSR2 (ENSCATG00000030169) #29	UBQLN4 (ENSCATG00000023959) #30	LAMTOR2 (ENSCATG00000030341) #31	RAB25 (ENSCATG00000029662) #32	MEX3A (ENSCATG00000032390) #33	LMNA (ENSCATG00000033574) #34	SEMA4A (ENSCATG00000036260) #35	ENSCATG00000042076
Macaca	ANCESTRAL SPECIES		ENSGT00940000159283.d #10	ENSGT00950000182919.B.a.e	ENSGT00390000009464.k.b.a	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f.a #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.a.a ##23	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.g.a ##20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Pig-tailed macaque	MODERN SPECIES	262	THBS3 (ENSMNEG00000045432) #10	MTX1 (ENSMNEG00000040125)	ENSMNEG00000025026	GBA1 (ENSMNEG00000031343)	ENTREP3 (ENSMNEG00000035402) #11	SCAMP3 (ENSMNEG00000044530) #12	CLK2 (ENSMNEG00000031061) #13	HCN3 (ENSMNEG00000042405) #14	PKLR (ENSMNEG00000009109) #15	ENSMNEG00000041237 #16	ENSMNEG00000034281 #18	RUSC1 (ENSMNEG00000037791) #17	ASH1L (ENSMNEG00000004882) #19	MSTO1 (ENSMNEG00000030351) ##20	YY1AP1 (ENSMNEG00000038421) #21	DAP3 (ENSMNEG00000043408) #22	GON4L (ENSMNEG00000022837) #23	SYT11 (ENSMNEG00000039442) #24	RIT1 (ENSMNEG00000039545) #25	KHDC4 (ENSMNEG00000005131) #26	RXFP4 (ENSMNEG00000025991)	ARHGEF2 (ENSMNEG00000030024) #28	ENSMNEG00000036868 #29	UBQLN4 (ENSMNEG00000028661) #30	LAMTOR2 (ENSMNEG00000044990) #31	RAB25 (ENSMNEG00000004251) #32	MEX3A (ENSMNEG00000031569) #33	LMNA (ENSMNEG00000045506) #34	SEMA4A (ENSMNEG00000027619) #35	ENSMNEG00000041520	SLC25A44 (ENSMNEG00000032439) #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a.e	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f.a #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.a.a ##23	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.g.b ##20	ENSGT00530000064067.g.a ##20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Rhesus	MODERN SPECIES		ENSMMUG00000008506	ENSMMUG00000059449	ENSMMUG00000053423	GBA1 (ENSMMUG00000008507)	ENTREP3 (ENSMMUG00000018309) #11	SCAMP3 (ENSMMUG00000018313) #12	CLK2 (ENSMMUG00000023141) #13	HCN3 (ENSMMUG00000061381) #14	PKLR (ENSMMUG00000023143) #15	FDPS (ENSMMUG00000023144) #16	ENSMMUG00000063807 #18	RUSC1 (ENSMMUG00000023145) #17	ENSMMUG00000058124	ENSMMUG00000009981 ##20	ASH1L (ENSMMUG00000023146) #19	DAP3 (ENSMMUG00000018080) #22	ENSMMUG00000062397 ##20	GON4L (ENSMMUG00000009987) #23	SYT11 (ENSMMUG00000021312) #24	RIT1 (ENSMMUG00000053454) #25	KHDC4 (ENSMMUG00000004648) #26	RXFP4 (ENSMMUG00000005090) #27	ARHGEF2 (ENSMMUG00000005092) #28	SSR2 (ENSMMUG00000013495) #29	UBQLN4 (ENSMMUG00000009983) #30	LAMTOR2 (ENSMMUG00000012126) #31	RAB25 (ENSMMUG00000022306) #32	MEX3A (ENSMMUG00000052160) #33	LMNA (ENSMMUG00000016096) #34	ENSMMUG00000037731	SEMA4A (ENSMMUG00000004901) #35
Crab-eating macaque	MODERN SPECIES		MTX1 (ENSMFAG00000043641)	GBA1 (ENSMFAG00000019252)	ENSMFAG00000044886 #11	SCAMP3 (ENSMFAG00000032474) #12	CLK2 (ENSMFAG00000050341) #13	HCN3 (ENSMFAG00000036135) #14	PKLR (ENSMFAG00000034196) #15	ENSMFAG00000003238 #16	ENSMFAG00000041982 #18	RUSC1 (ENSMFAG00000042892) #17	ENSMFAG00000059657	ASH1L (ENSMFAG00000004660) #19	ENSMFAG00000050889 ##23	ENSMFAG00000044446 #21	ENSMFAG00000056171	DAP3 (ENSMFAG00000031112) #22	MSTO1 (ENSMFAG00000031664) ##20	GON4L (ENSMFAG00000035960) #23	SYT11 (ENSMFAG00000039413) #24	RIT1 (ENSMFAG00000054543) #25	KHDC4 (ENSMFAG00000003201) #26	ENSMFAG00000029955 #27	ARHGEF2 (ENSMFAG00000034906) #28	SSR2 (ENSMFAG00000040060) #29	LAMTOR2 (ENSMFAG00000018166) #31	RAB25 (ENSMFAG00000000115) #32	MEX3A (ENSMFAG00000000628) #33	LMNA (ENSMFAG00000045463) #34	ENSMFAG00000054546 #36	SEMA4A (ENSMFAG00000037487) #35	SLC25A44 (ENSMFAG00000003800) #37
Vervet Monkey	MODERN SPECIES	12	KRTCAP2 (ENSCSAG00000001999) #7	TRIM46 (ENSCSAG00000002001) #8	MUC1 (ENSCSAG00000002002) #9	THBS3 (ENSCSAG00000002003) #10	MTX1 (ENSCSAG00000002004)	GBA1 (ENSCSAG00000002010)	ENTREP3 (ENSCSAG00000002013) #11	SCAMP3 (ENSCSAG00000002017) #12	CLK2 (ENSCSAG00000002019) ##13	HCN3 (ENSCSAG00000002020) #14	PKLR (ENSCSAG00000002021) #15	ENSCSAG00000002022 #16	RUSC1 (ENSCSAG00000002023) #17	ASH1L (ENSCSAG00000002027) #19	YY1AP1 (ENSCSAG00000002031) #21	DAP3 (ENSCSAG00000002035) #22	ENSCSAG00000002038 #20	GON4L (ENSCSAG00000002060) #23	SYT11 (ENSCSAG00000002072) #24	RIT1 (ENSCSAG00000002074) #25	KHDC4 (ENSCSAG00000002082) #26	ENSCSAG00000000059 #27	ARHGEF2 (ENSCSAG00000002088) #28	SSR2 (ENSCSAG00000002090) #29	UBQLN4 (ENSCSAG00000002093) #30	LAMTOR2 (ENSCSAG00000002094) #31	RAB25 (ENSCSAG00000002096) #32	MEX3A (ENSCSAG00000002097) #33	LMNA (ENSCSAG00000002099) #34	SEMA4A (ENSCSAG00000002102) #35	SLC25A44 (ENSCSAG00000002104) #37
Rhinopithecus	ANCESTRAL SPECIES	59															ENSGT00390000016256.l.a.a ##23	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00390000002944.e.a.a.a.a
Black snub-nosed monkey	MODERN SPECIES	2708															ENSRBIG00000031858 ##23	DAP3 (ENSRBIG00000040550) #22
Golden snub-nosed monkey	MODERN SPECIES	1378														ENSRROG00000014134 ##23	ENSRROG00000040709 ##23	DAP3 (ENSRROG00000041228) #22	MSTO1 (ENSRROG00000039402) #20	GON4L (ENSRROG00000002995) #23	SYT11 (ENSRROG00000040729) #24	RIT1 (ENSRROG00000035955) #25	KHDC4 (ENSRROG00000030403) #26	RXFP4 (ENSRROG00000013377)	ARHGEF2 (ENSRROG00000032685) #28	SSR2 (ENSRROG00000037774) #29	ENSRROG00000045601 #30
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.k.b	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Hominidae	ANCESTRAL SPECIES	6	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.k.b	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.k.b	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00530000064067.d #20	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.c.b #20	ENSGT00530000064067.c.a #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.k.b	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00530000064067.d #20	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.c.a #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Pan	ANCESTRAL SPECIES		ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.k.b	ENSGT00390000009464.k.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947.f.a #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.f #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000155046.t.g.b.b	ENSGT00940000156698 #19	ENSGT00390000016256.l.b #21	ENSGT00390000015248 #22	ENSGT00530000064067.c.a #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Bonobo	MODERN SPECIES		THBS3 (ENSPPAG00000044068) #10	ENSPPAG00000028951	ENSPPAG00000015877	GBA1 (ENSPPAG00000029207)	ENTREP3 (ENSPPAG00000032637) #11	SCAMP3 (ENSPPAG00000029123) #12	CLK2 (ENSPPAG00000043646) #13	HCN3 (ENSPPAG00000027397) #14	PKLR (ENSPPAG00000040530) #15	FDPS (ENSPPAG00000000635) #16	ENSPPAG00000027399 #18	RUSC1 (ENSPPAG00000030052) #17	ASH1L (ENSPPAG00000031869) #19	ENSPPAG00000036109	YY1AP1 (ENSPPAG00000041804) #21	DAP3 (ENSPPAG00000030901) #22	ENSPPAG00000035270	ENSPPAG00000028555 #20	GON4L (ENSPPAG00000030169) #23	SYT11 (ENSPPAG00000039359) #24	RIT1 (ENSPPAG00000043026) #25	KHDC4 (ENSPPAG00000028145) #26	RXFP4 (ENSPPAG00000011483)	ARHGEF2 (ENSPPAG00000043187) #28	ENSPPAG00000036187 #29	UBQLN4 (ENSPPAG00000040262) #30	LAMTOR2 (ENSPPAG00000037502) #31	RAB25 (ENSPPAG00000031127) #32	MEX3A (ENSPPAG00000016303) #33	LMNA (ENSPPAG00000037857) #34	SEMA4A (ENSPPAG00000043828) #35
Chimpanzee	MODERN SPECIES		MTX1 (ENSPTRG00000001414)	ENSPTRG00000001415	GBA1 (ENSPTRG00000001416)	ENTREP3 (ENSPTRG00000001417) #11	SCAMP3 (ENSPTRG00000001418) #12	CLK2 (ENSPTRG00000001419) #13	HCN3 (ENSPTRG00000001420) #14	PKLR (ENSPTRG00000001421) #15	FDPS (ENSPTRG00000001422) #16	ENSPTRG00000043354 #18	RUSC1 (ENSPTRG00000001424) #17	ASH1L (ENSPTRG00000001425) #19	ENSPTRG00000047569	CLDN6 (ENSPTRG00000045058)	YY1AP1 (ENSPTRG00000001429) #21	DAP3 (ENSPTRG00000001430) #22	MSTO1 (ENSPTRG00000001428) #20	GON4L (ENSPTRG00000001433) #23	SYT11 (ENSPTRG00000001436) #24	RIT1 (ENSPTRG00000001437) #25	KHDC4 (ENSPTRG00000001438) #26	RXFP4 (ENSPTRG00000001439)	ARHGEF2 (ENSPTRG00000001441) #28	SSR2 (ENSPTRG00000001442) #29	UBQLN4 (ENSPTRG00000001444) #30	LAMTOR2 (ENSPTRG00000001445) #31	RAB25 (ENSPTRG00000001446) #32	MEX3A (ENSPTRG00000030373) #33	LMNA (ENSPTRG00000001447) #34	SEMA4A (ENSPTRG00000001448) #35	SLC25A44 (ENSPTRG00000001449) #37
Human	MODERN SPECIES		TRIM46 (ENSG00000163462) #8	MUC1 (ENSG00000185499) #9	THBS3 (ENSG00000169231) #10	MTX1 (ENSG00000173171)	GBA1 (ENSG00000177628)	ENTREP3 (ENSG00000160767) #11	SCAMP3 (ENSG00000116521) #12	CLK2 (ENSG00000176444) #13	HCN3 (ENSG00000143630) #14	PKLR (ENSG00000143627) #15	FDPS (ENSG00000160752) #16	RUSC1 (ENSG00000160753) #17	ASH1L (ENSG00000116539) #19	MSTO1 (ENSG00000125459) #20	YY1AP1 (ENSG00000163374) #21	DAP3 (ENSG00000132676) #22	GON4L (ENSG00000116580) #23	SYT11 (ENSG00000132718) #24	RIT1 (ENSG00000143622) #25	KHDC4 (ENSG00000132680) #26	RXFP4 (ENSG00000173080)	ARHGEF2 (ENSG00000116584) #28	SSR2 (ENSG00000163479) #29	UBQLN4 (ENSG00000160803) #30	LAMTOR2 (ENSG00000116586) #31	RAB25 (ENSG00000132698) #32	MEX3A (ENSG00000254726) #33	LMNA (ENSG00000160789) #34	SEMA4A (ENSG00000196189) #35	SLC25A44 (ENSG00000160785) #37	PMF1-BGLAP (ENSG00000260238)
Gorilla	MODERN SPECIES		MUC1 (ENSGGOG00000009317) #9	THBS3 (ENSGGOG00000009322) #10	MTX1 (ENSGGOG00000009334)	ENSGGOG00000009344	ENTREP3 (ENSGGOG00000009422) #11	SCAMP3 (ENSGGOG00000009432) #12	CLK2 (ENSGGOG00000009438) #13	HCN3 (ENSGGOG00000016122) #14	PKLR (ENSGGOG00000001917) #15	FDPS (ENSGGOG00000041370) #16	ENSGGOG00000039031 #18	RUSC1 (ENSGGOG00000000408) #17	ASH1L (ENSGGOG00000011218) #19	ENSGGOG00000000475 #20	YY1AP1 (ENSGGOG00000026024) #21	DAP3 (ENSGGOG00000007618) #22	ENSGGOG00000040593 #20	GON4L (ENSGGOG00000000477) #23	ENSGGOG00000025183 ##23	SYT11 (ENSGGOG00000010111) #24	RIT1 (ENSGGOG00000001461) #25	KHDC4 (ENSGGOG00000024568) #26	RXFP4 (ENSGGOG00000034869)	ARHGEF2 (ENSGGOG00000005907) #28	SSR2 (ENSGGOG00000024769) #29	ENSGGOG00000008916 #30	LAMTOR2 (ENSGGOG00000006818) #31	RAB25 (ENSGGOG00000006821) #32	MEX3A (ENSGGOG00000004513) #33	LMNA (ENSGGOG00000000813) #34	SEMA4A (ENSGGOG00000000814) #35
Orangutan	MODERN SPECIES		MUC1 (ENSPPYG00000000754) #9	THBS3 (ENSPPYG00000000753) #10	MTX1 (ENSPPYG00000000752)	GBA1 (ENSPPYG00000000751)	ENTREP3 (ENSPPYG00000000750) #11	SCAMP3 (ENSPPYG00000000749) #12	CLK2 (ENSPPYG00000000748) #13	HCN3 (ENSPPYG00000010642) #14	PKLR (ENSPPYG00000010643) #15	FDPS (ENSPPYG00000000747) #16	ENSPPYG00000000746 #18	RUSC1 (ENSPPYG00000000745) #17	ENSPPYG00000033728	ASH1L (ENSPPYG00000000744) #19	YY1AP1 (ENSPPYG00000000743) #21	DAP3 (ENSPPYG00000000742) #22	MSTO1 (ENSPPYG00000000740) #20	MSTO2P (ENSPPYG00000010648)	GON4L (ENSPPYG00000000739) #23	SYT11 (ENSPPYG00000039531) #24	RIT1 (ENSPPYG00000000737) #25	KHDC4 (ENSPPYG00000000736) #26	RXFP4 (ENSPPYG00000000735)	ARHGEF2 (ENSPPYG00000000734) #28	SSR2 (ENSPPYG00000000733) #29	UBQLN4 (ENSPPYG00000000732) #30	LAMTOR2 (ENSPPYG00000000731) #31	RAB25 (ENSPPYG00000000730) #32	MEX3A (ENSPPYG00000000729) #33	LMNA (ENSPPYG00000000728) #34	SEMA4A (ENSPPYG00000000727) #35
Gibbon	MODERN SPECIES	2	MTX1 (ENSNLEG00000011933)	ENSNLEG00000035805	ENSNLEG00000031857	GBA1 (ENSNLEG00000011948)	ENTREP3 (ENSNLEG00000012029) #11	SCAMP3 (ENSNLEG00000012031) #12	CLK2 (ENSNLEG00000012062) #13	HCN3 (ENSNLEG00000012072) #14	PKLR (ENSNLEG00000012082) #15	FDPS (ENSNLEG00000012099) #16	ENSNLEG00000012125 #18	RUSC1 (ENSNLEG00000012131) #17	ASH1L (ENSNLEG00000012163) #19	ENSNLEG00000012222 #20	YY1AP1 (ENSNLEG00000012206) #21	DAP3 (ENSNLEG00000012211) #22	ENSNLEG00000031265 #20	GON4L (ENSNLEG00000035449) #23	SYT11 (ENSNLEG00000012224) #24	RIT1 (ENSNLEG00000012228) #25	KHDC4 (ENSNLEG00000012238) #26	ENSNLEG00000012262	ARHGEF2 (ENSNLEG00000012264) #28	SSR2 (ENSNLEG00000032588) #29	LAMTOR2 (ENSNLEG00000035591) #31	RAB25 (ENSNLEG00000012323) #32	MEX3A (ENSNLEG00000012329) #33	LMNA (ENSNLEG00000012331) #34	SEMA4A (ENSNLEG00000012367) #35	ENSNLEG00000012408 #37	ENSNLEG00000033074
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.e.b.b.a.a.a ##16	ENSGT00390000012642 #18	ENSGT00900000141074.e.b.b.b ##16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Mas night monkey	MODERN SPECIES	1180					ENTREP3 (ENSANAG00000022747) #11	CLK2 (ENSANAG00000020852) #13	HCN3 (ENSANAG00000038434) #14	PKLR (ENSANAG00000022050) #15	ENSANAG00000032504 ##16	ENSANAG00000036334 #18	RUSC1 (ENSANAG00000027974) #17	ASH1L (ENSANAG00000019337) #19	ENSANAG00000028010 #20	ENSANAG00000024232	YY1AP1 (ENSANAG00000022356) #21	DAP3 (ENSANAG00000033995) #22	ENSANAG00000035773 #20	ENSANAG00000026598	GON4L (ENSANAG00000036572) #23	ENSANAG00000006710	SYT11 (ENSANAG00000020380) #24	RIT1 (ENSANAG00000033671) #25	ENSANAG00000034289 #26	ARHGEF2 (ENSANAG00000038394) #28	SSR2 (ENSANAG00000024178) #29	UBQLN4 (ENSANAG00000031889) #30	LAMTOR2 (ENSANAG00000036124) #31	RAB25 (ENSANAG00000036045) #32	MEX3A (ENSANAG00000032597) #33	LMNA (ENSANAG00000028703) #34	SEMA4A (ENSANAG00000032935) #35
Cebidae	ANCESTRAL SPECIES	12	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.e.b.b.a.a.a ##16	ENSGT00390000012642 #18	ENSGT00900000141074.e.b.b.b ##16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Marmoset	MODERN SPECIES	9	THBS3 (ENSCJAG00000008715) #10	MTX1 (ENSCJAG00000008683)	GBA1 (ENSCJAG00000008613)	ENSCJAG00000086803	ENTREP3 (ENSCJAG00000008526) #11	SCAMP3 (ENSCJAG00000008486) #12	CLK2 (ENSCJAG00000008447) #13	HCN3 (ENSCJAG00000008422) #14	PKLR (ENSCJAG00000008393) #15	ENSCJAG00000008364 ##16	RUSC1 (ENSCJAG00000008263) #17	ASH1L (ENSCJAG00000008157) #19	ENSCJAG00000081873	MSTO1 (ENSCJAG00000008092) #20	YY1AP1 (ENSCJAG00000042285) #21	DAP3 (ENSCJAG00000008125) #22	ENSCJAG00000063148 #20	GON4L (ENSCJAG00000007977) #23	SYT11 (ENSCJAG00000043885) #24	ENSCJAG00000032919	RIT1 (ENSCJAG00000061243) #25	KHDC4 (ENSCJAG00000007881) #26	ENSCJAG00000007878 #27	ARHGEF2 (ENSCJAG00000007846) #28	SSR2 (ENSCJAG00000046590) #29	UBQLN4 (ENSCJAG00000007755) #30	LAMTOR2 (ENSCJAG00000007739) #31	RAB25 (ENSCJAG00000007715) #32	MEX3A (ENSCJAG00000007711) #33	LMNA (ENSCJAG00000005413) #34	SEMA4A (ENSCJAG00000005605) #35
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.e.b.b.a.a.a ##16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000016256.l #21	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.k #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Capuchin	MODERN SPECIES	427															YY1AP1 (ENSCCAG00000026983) #21	DAP3 (ENSCCAG00000033532) #22	MSTO1 (ENSCCAG00000035498) #20	GON4L (ENSCCAG00000037108) #23	SYT11 (ENSCCAG00000016634) #24	RIT1 (ENSCCAG00000037656) #25	KHDC4 (ENSCCAG00000023017) #26	ARHGEF2 (ENSCCAG00000029636) #28	SSR2 (ENSCCAG00000037436) #29	ENSCCAG00000029510	UBQLN4 (ENSCCAG00000036689) #30	LAMTOR2 (ENSCCAG00000026308) #31	RAB25 (ENSCCAG00000021873) #32	MEX3A (ENSCCAG00000022351) #33	LMNA (ENSCCAG00000023432) #34	SEMA4A (ENSCCAG00000032806) #35	SLC25A44 (ENSCCAG00000026588) #37
Bolivian squirrel monkey	MODERN SPECIES	136	TRIM46 (ENSSBOG00000025545) #8	ENSSBOG00000024953 #9	THBS3 (ENSSBOG00000019435) #10	MTX1 (ENSSBOG00000030475)	GBA1 (ENSSBOG00000021424)	ENTREP3 (ENSSBOG00000035272) #11	SCAMP3 (ENSSBOG00000035685) #12	CLK2 (ENSSBOG00000027182) #13	HCN3 (ENSSBOG00000021128) #14	PKLR (ENSSBOG00000030303) #15	ENSSBOG00000020002 ##16	ENSSBOG00000036252 #18	RUSC1 (ENSSBOG00000020883) #17	ASH1L (ENSSBOG00000026764) #19	YY1AP1 (ENSSBOG00000029484) #21	DAP3 (ENSSBOG00000033972) #22	MSTO1 (ENSSBOG00000023864) #20	GON4L (ENSSBOG00000032520) #23	SYT11 (ENSSBOG00000035584) #24	RIT1 (ENSSBOG00000023350) #25	KHDC4 (ENSSBOG00000034469) #26	RXFP4 (ENSSBOG00000034710)	ARHGEF2 (ENSSBOG00000034006) #28	SSR2 (ENSSBOG00000020706) #29	UBQLN4 (ENSSBOG00000021728) #30	LAMTOR2 (ENSSBOG00000035732) #31	RAB25 (ENSSBOG00000032212) #32	MEX3A (ENSSBOG00000025317) #33	LMNA (ENSSBOG00000014857) #34	SEMA4A (ENSSBOG00000019443) #35	SLC25A44 (ENSSBOG00000020325) #37
Tarsier	MODERN SPECIES	7108															ENSTSYG00000036813 #23	DAP3 (ENSTSYG00000011490) #22	ENSTSYG00000028309	PSPC1 (ENSTSYG00000032882)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917.a #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Coquerels sifaka	MODERN SPECIES	750	SLC50A1 (ENSPCOG00000021074)	KRTCAP2 (ENSPCOG00000021081) #7	TRIM46 (ENSPCOG00000027874) #8	ENSPCOG00000017261 #9	THBS3 (ENSPCOG00000018008) #10	MTX1 (ENSPCOG00000028755)	GBA1 (ENSPCOG00000028756)	ENTREP3 (ENSPCOG00000001985) #11	SCAMP3 (ENSPCOG00000020571) #12	CLK2 (ENSPCOG00000027461) #13	HCN3 (ENSPCOG00000021822) #14	PKLR (ENSPCOG00000028225) #15	ENSPCOG00000022505 #16	RUSC1 (ENSPCOG00000025947) #17	ASH1L (ENSPCOG00000017924) #19	DAP3 (ENSPCOG00000027412) #22	MSTO1 (ENSPCOG00000017579) #20	ENSPCOG00000024149 #23	SYT11 (ENSPCOG00000017038) #24	RIT1 (ENSPCOG00000027211) #25	KHDC4 (ENSPCOG00000027660) #26	ARHGEF2 (ENSPCOG00000016528) #28	ENSPCOG00000019355	SSR2 (ENSPCOG00000022217) #29	UBQLN4 (ENSPCOG00000017664) #30	LAMTOR2 (ENSPCOG00000023468) #31	RAB25 (ENSPCOG00000005144) #32	MEX3A (ENSPCOG00000019307) #33	ENSPCOG00000028240 #34	SEMA4A (ENSPCOG00000021582) #35	SLC25A44 (ENSPCOG00000017429) #37
Mouse lemur	MODERN SPECIES	11	SLC50A1 (ENSMICG00000008029)	KRTCAP2 (ENSMICG00000008049) #7	TRIM46 (ENSMICG00000008052) #8	ENSMICG00000044227 #9	THBS3 (ENSMICG00000011642) #10	MTX1 (ENSMICG00000011658)	GBA1 (ENSMICG00000011667)	ENTREP3 (ENSMICG00000007413) #11	SCAMP3 (ENSMICG00000007428) #12	CLK2 (ENSMICG00000007436) #13	HCN3 (ENSMICG00000030454) #14	PKLR (ENSMICG00000007458) #15	ENSMICG00000007468 #16	RUSC1 (ENSMICG00000029028) #17	ASH1L (ENSMICG00000007490) #19	DAP3 (ENSMICG00000031947) #22	MSTO1 (ENSMICG00000028414) #20	ENSMICG00000002183 #23	SYT11 (ENSMICG00000038586) #24	RIT1 (ENSMICG00000044667) #25	KHDC4 (ENSMICG00000002202) #26	ARHGEF2 (ENSMICG00000002212) #28	ENSMICG00000030729	ENSMICG00000038131 #29	UBQLN4 (ENSMICG00000002222) #30	LAMTOR2 (ENSMICG00000002227) #31	RAB25 (ENSMICG00000002230) #32	MEX3A (ENSMICG00000046214) #33	LMNA (ENSMICG00000002236) #34	SEMA4A (ENSMICG00000002242) #35	SLC25A44 (ENSMICG00000047168) #37
Bushbaby	MODERN SPECIES	206	SLC50A1 (ENSOGAG00000013829)	DPM3 (ENSOGAG00000013833)	KRTCAP2 (ENSOGAG00000030271) #7	TRIM46 (ENSOGAG00000013835) #8	ENSOGAG00000024871 #9	THBS3 (ENSOGAG00000009573) #10	MTX1 (ENSOGAG00000024701)	GBA1 (ENSOGAG00000031511)	ENTREP3 (ENSOGAG00000009579) #11	SCAMP3 (ENSOGAG00000009585) #12	CLK2 (ENSOGAG00000009589) #13	HCN3 (ENSOGAG00000009594) #14	PKLR (ENSOGAG00000028418) #15	RUSC1 (ENSOGAG00000025498) #17	ASH1L (ENSOGAG00000009609) #19	DAP3 (ENSOGAG00000000845) #22	MSTO1 (ENSOGAG00000031236) #20	ENSOGAG00000000849 #23	SYT11 (ENSOGAG00000002258) #24	ENSOGAG00000002260 #25	KHDC4 (ENSOGAG00000002261) #26	ENSOGAG00000026040 #27	ARHGEF2 (ENSOGAG00000011581) #28	SSR2 (ENSOGAG00000016945) #29	UBQLN4 (ENSOGAG00000016948) #30	LAMTOR2 (ENSOGAG00000016953) #31	RAB25 (ENSOGAG00000016955) #32	MEX3A (ENSOGAG00000029891) #33	LMNA (ENSOGAG00000016961) #34	SEMA4A (ENSOGAG00000025069) #35	ENSOGAG00000034650 #37
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00390000012642 #18	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Glires	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Rodentia	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Murinae	ANCESTRAL SPECIES	5	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.u #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Mus	ANCESTRAL SPECIES	7	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.u #17	ENSGT00900000141033.b.b.v #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.u #17	ENSGT00900000141033.b.b.v #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.u #17	ENSGT00900000141033.b.b.v #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Mouse	MODERN SPECIES	12	Dpm3 (ENSMUSG00000042737)	Krtcap2 (ENSMUSG00000042747) #7	Trim46 (ENSMUSG00000042766) #8	Muc1 (ENSMUSG00000042784)	Thbs3 (ENSMUSG00000028047) #10	Mtx1 (ENSMUSG00000064068)	Gba (ENSMUSG00000028048)	Entrep3 (ENSMUSG00000032657) #11	Scamp3 (ENSMUSG00000028049) #12	Clk2 (ENSMUSG00000068917) #13	Hcn3 (ENSMUSG00000028051) #14	Pklr (ENSMUSG00000041237) #15	Fdps (ENSMUSG00000059743) #16	Rusc1 (ENSMUSG00000041263) #17	Ash1l (ENSMUSG00000028053) #19	Dap3 (ENSMUSG00000068921) #22	Msto1 (ENSMUSG00000068922) #20	Gon4l (ENSMUSG00000054199) #23	Syt11 (ENSMUSG00000068923) #24	Rit1 (ENSMUSG00000028057) #25	Khdc4 (ENSMUSG00000028060) #26	Rxfp4 (ENSMUSG00000049741)	Arhgef2 (ENSMUSG00000028059) #28	Ssr2 (ENSMUSG00000041355) #29	Ubqln4 (ENSMUSG00000008604) #30	Lamtor2 (ENSMUSG00000028062) #31	Rab25 (ENSMUSG00000008601) #32	Mex3a (ENSMUSG00000074480) #33	Lmna (ENSMUSG00000028063) #34	Sema4a (ENSMUSG00000028064) #35	Slc25a44 (ENSMUSG00000050144) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.u #17	ENSGT00900000141033.b.b.v #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Steppe mouse	MODERN SPECIES	2167													ENSMSIG00000020532 #16	Rusc1 (ENSMSIG00000020587) #17	Ash1l (ENSMSIG00000020662) #19	ENSMSIG00000020762 #22	Msto1 (ENSMSIG00000020852) #20
spretus	MODERN SPECIES	12	Krtcap2 (MGP_SPRETEiJ_G0026140) #7	Trim46 (MGP_SPRETEiJ_G0026139) #8	Muc1 (MGP_SPRETEiJ_G0026138)	Thbs3 (MGP_SPRETEiJ_G0026137) #10	Mtx1 (MGP_SPRETEiJ_G0026136)	Gba (MGP_SPRETEiJ_G0026135)	Entrep3 (MGP_SPRETEiJ_G0026134) #11	Scamp3 (MGP_SPRETEiJ_G0026133) #12	Clk2 (MGP_SPRETEiJ_G0026132) #13	Hcn3 (MGP_SPRETEiJ_G0026131) #14	Pklr (MGP_SPRETEiJ_G0026130) #15	Fdps (MGP_SPRETEiJ_G0026129) #16	Rusc1 (MGP_SPRETEiJ_G0026128) #17	MGP_SPRETEiJ_G0026127 #17	Ash1l (MGP_SPRETEiJ_G0026126) #19	Dap3 (MGP_SPRETEiJ_G0026125) #22	Msto1 (MGP_SPRETEiJ_G0026124) #20	Gon4l (MGP_SPRETEiJ_G0026123) #23	Syt11 (MGP_SPRETEiJ_G0026122) #24	Rit1 (MGP_SPRETEiJ_G0026121) #25	Khdc4 (MGP_SPRETEiJ_G0026120) #26	Rxfp4 (MGP_SPRETEiJ_G0026119)	Arhgef2 (MGP_SPRETEiJ_G0026118) #28	Ssr2 (MGP_SPRETEiJ_G0026117) #29	Ubqln4 (MGP_SPRETEiJ_G0026116) #30	Lamtor2 (MGP_SPRETEiJ_G0026115) #31	Rab25 (MGP_SPRETEiJ_G0026114) #32	MGP_SPRETEiJ_G0026113 #33	Lmna (MGP_SPRETEiJ_G0026112) #34	Sema4a (MGP_SPRETEiJ_G0026111) #35	Slc25a44 (MGP_SPRETEiJ_G0026110) #37
Ryukyu mouse	MODERN SPECIES	12	Krtcap2 (MGP_CAROLIEiJ_G0025197) #7	Trim46 (MGP_CAROLIEiJ_G0025196) #8	Muc1 (MGP_CAROLIEiJ_G0025195)	Thbs3 (MGP_CAROLIEiJ_G0025194) #10	Mtx1 (MGP_CAROLIEiJ_G0025193)	Gba (MGP_CAROLIEiJ_G0025192)	Entrep3 (MGP_CAROLIEiJ_G0025191) #11	Scamp3 (MGP_CAROLIEiJ_G0025190) #12	Clk2 (MGP_CAROLIEiJ_G0025189) #13	Hcn3 (MGP_CAROLIEiJ_G0025188) #14	Pklr (MGP_CAROLIEiJ_G0025187) #15	Fdps (MGP_CAROLIEiJ_G0025186) #16	Rusc1 (MGP_CAROLIEiJ_G0025185) #17	MGP_CAROLIEiJ_G0025184 #17	Ash1l (MGP_CAROLIEiJ_G0025183) #19	Dap3 (MGP_CAROLIEiJ_G0025182) #22	Msto1 (MGP_CAROLIEiJ_G0025181) #20	MGP_CAROLIEiJ_G0025180 #23	Syt11 (MGP_CAROLIEiJ_G0025179) #24	Rit1 (MGP_CAROLIEiJ_G0025178) #25	Khdc4 (MGP_CAROLIEiJ_G0025177) #26	Rxfp4 (MGP_CAROLIEiJ_G0025176)	Arhgef2 (MGP_CAROLIEiJ_G0025175) #28	Ssr2 (MGP_CAROLIEiJ_G0025174) #29	Ubqln4 (MGP_CAROLIEiJ_G0025173) #30	Lamtor2 (MGP_CAROLIEiJ_G0025172) #31	Rab25 (MGP_CAROLIEiJ_G0025171) #32	Mex3a (MGP_CAROLIEiJ_G0025170) #33	Lmna (MGP_CAROLIEiJ_G0025169) #34	Sema4a (MGP_CAROLIEiJ_G0025168) #35	Slc25a44 (MGP_CAROLIEiJ_G0025167) #37
Shrew mouse	MODERN SPECIES	17	Krtcap2 (MGP_PahariEiJ_G0026641) #7	Trim46 (MGP_PahariEiJ_G0026640) #8	Muc1 (MGP_PahariEiJ_G0026639)	Thbs3 (MGP_PahariEiJ_G0026638) #10	Mtx1 (MGP_PahariEiJ_G0026637)	MGP_PahariEiJ_G0026636	Entrep3 (MGP_PahariEiJ_G0026635) #11	Scamp3 (MGP_PahariEiJ_G0026634) #12	Clk2 (MGP_PahariEiJ_G0026633) #13	Hcn3 (MGP_PahariEiJ_G0026632) #14	Pklr (MGP_PahariEiJ_G0026631) #15	Fdps (MGP_PahariEiJ_G0026630) #16	Rusc1 (MGP_PahariEiJ_G0026629) #17	MGP_PahariEiJ_G0026628 #17	Ash1l (MGP_PahariEiJ_G0026627) #19	Dap3 (MGP_PahariEiJ_G0026626) #22	MGP_PahariEiJ_G0026625 #20	Gon4l (MGP_PahariEiJ_G0026624) #23	Syt11 (MGP_PahariEiJ_G0026623) #24	Rit1 (MGP_PahariEiJ_G0026622) #25	Khdc4 (MGP_PahariEiJ_G0026621) #26	Arhgef2 (MGP_PahariEiJ_G0026620) #28	Ssr2 (MGP_PahariEiJ_G0026619) #29	Ubqln4 (MGP_PahariEiJ_G0026618) #30	Lamtor2 (MGP_PahariEiJ_G0026617) #31	Rab25 (MGP_PahariEiJ_G0026616) #32	Mex3a (MGP_PahariEiJ_G0026615) #33	Lmna (MGP_PahariEiJ_G0026614) #34	Sema4a (MGP_PahariEiJ_G0026613) #35	Slc25a44 (MGP_PahariEiJ_G0026612) #37	Pmf1 (MGP_PahariEiJ_G0026611)
Rat	MODERN SPECIES	11	Efna1 (ENSRNOG00000020573)	Slc50a1 (ENSRNOG00000020554)	Dpm3 (ENSRNOG00000065280)	Krtcap2 (ENSRNOG00000020542) #7	Trim46 (ENSRNOG00000055433) #8	Muc1 (ENSRNOG00000020539)	Thbs3 (ENSRNOG00000059903) #10	Mtx1 (ENSRNOG00000042977)	Gba (ENSRNOG00000049281)	Entrep3 (ENSRNOG00000020518) #11	Scamp3 (ENSRNOG00000020500) #13	Hcn3 (ENSRNOG00000020444) #14	Pklr (ENSRNOG00000020420) #15	Fdps (ENSRNOG00000043377) #17	Ash1l (ENSRNOG00000020386) #19	Dap3 (ENSRNOG00000020373) #22	Msto1 (ENSRNOG00000020357) #20	Gon4l (ENSRNOG00000020297) #23	Syt11 (ENSRNOG00000020279) #24	Rit1 (ENSRNOG00000064584) #25	Khdc4 (ENSRNOG00000020139) #26	Arhgef2 (ENSRNOG00000020027) #28	Ssr2 (ENSRNOG00000019940) #29	Ubqln4 (ENSRNOG00000019933) #30	Lamtor2 (ENSRNOG00000019908) #31	Rab25 (ENSRNOG00000023640) #32	Mex3a (ENSRNOG00000058654) #33	Lmna (ENSRNOG00000019638) #34	Sema4a (ENSRNOG00000019737) #35	Slc25a44 (ENSRNOG00000025269) #37	Pmf1 (ENSRNOG00000019620)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Golden Hamster	MODERN SPECIES	352																ENSMAUG00000018128 #22
Chinese hamster chok1gshd	MODERN SPECIES	352	Krtcap2 (ENSCGRG00001000610) #7	Trim46 (ENSCGRG00001019567) #8	ENSCGRG00001020399 #9	Thbs3 (ENSCGRG00001015119) #10	Mtx1 (ENSCGRG00001023038)	Gba (ENSCGRG00001002397)	Entrep3 (ENSCGRG00001009836) #11	Scamp3 (ENSCGRG00001023330) #12	Clk2 (ENSCGRG00001014237) #13	Hcn3 (ENSCGRG00001011318) #14	Pklr (ENSCGRG00001023372) #15	ENSCGRG00001023534	Fdps (ENSCGRG00001025003) #16	Rusc1 (ENSCGRG00001009459) #17	Ash1l (ENSCGRG00001011192) #19	Dap3 (ENSCGRG00001022521) #22	Msto1 (ENSCGRG00001015681) #20	Gon4l (ENSCGRG00001023253) #23	Syt11 (ENSCGRG00001023824) #24	Rit1 (ENSCGRG00001004542) #25	Khdc4 (ENSCGRG00001012564) #26	Rxfp4 (ENSCGRG00001002374)	Arhgef2 (ENSCGRG00001006987) #28	Ssr2 (ENSCGRG00001006822) #29	Ubqln4 (ENSCGRG00001019653) #30	Lamtor2 (ENSCGRG00001008748) #31	Rab25 (ENSCGRG00001017341) #32	Mex3a (ENSCGRG00001000412) #33	Lmna (ENSCGRG00001003129) #34	Sema4a (ENSCGRG00001020918) #35	Slc25a44 (ENSCGRG00001021651) #37
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Prairie vole	MODERN SPECIES	99	Krtcap2 (ENSMOCG00000001618) #7	Trim46 (ENSMOCG00000013790) #8	ENSMOCG00000001966 #9	Thbs3 (ENSMOCG00000016585) #10	ENSMOCG00000017392	Gba (ENSMOCG00000016015)	Entrep3 (ENSMOCG00000021254) #11	Scamp3 (ENSMOCG00000004028) #12	Clk2 (ENSMOCG00000014182) #13	Hcn3 (ENSMOCG00000000707) #14	Pklr (ENSMOCG00000017208) #15	Fdps (ENSMOCG00000019239) #16	ENSMOCG00000013334 #17	ENSMOCG00000021277	Ash1l (ENSMOCG00000000265) #19	Dap3 (ENSMOCG00000021693) #22	Msto1 (ENSMOCG00000004748) #20	Gon4l (ENSMOCG00000021379) #23	Syt11 (ENSMOCG00000011975) #24	Rit1 (ENSMOCG00000021127) #25	Khdc4 (ENSMOCG00000011181) #26	ENSMOCG00000001288	Elfn1 (ENSMOCG00000022659)	Psmg3 (ENSMOCG00000014791)	Tmem184a (ENSMOCG00000015212)	Mafk (ENSMOCG00000007501)	Ints1 (ENSMOCG00000000148)	Micall2 (ENSMOCG00000020252)	Uncx (ENSMOCG00000003910)	ENSMOCG00000021406	Gper1 (ENSMOCG00000004589)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	19	Dpm3 (ENSPEMG00000014086)	Krtcap2 (ENSPEMG00000001476) #7	Trim46 (ENSPEMG00000014035) #8	ENSPEMG00000019074 #9	Thbs3 (ENSPEMG00000015368) #10	Mtx1 (ENSPEMG00000015682)	Gba (ENSPEMG00000009373)	Entrep3 (ENSPEMG00000011050) #11	Scamp3 (ENSPEMG00000015749) #12	Clk2 (ENSPEMG00000012240) #13	Hcn3 (ENSPEMG00000009033) #14	Pklr (ENSPEMG00000010915) #15	Fdps (ENSPEMG00000030569) #16	Rusc1 (ENSPEMG00000018232) #17	Ash1l (ENSPEMG00000006789) #19	ENSPEMG00000019185 #22	Msto1 (ENSPEMG00000016178) #20	Gon4l (ENSPEMG00000017252) #23	Syt11 (ENSPEMG00000003809) #24	Rit1 (ENSPEMG00000030433) #25	Khdc4 (ENSPEMG00000007794) #26	Rxfp4 (ENSPEMG00000011662)	Arhgef2 (ENSPEMG00000002997) #28	Ssr2 (ENSPEMG00000012464) #29	Ubqln4 (ENSPEMG00000016759) #30	Lamtor2 (ENSPEMG00000009818) #31	Rab25 (ENSPEMG00000007548) #32	Mex3a (ENSPEMG00000019014) #33	Lmna (ENSPEMG00000015821) #34	Sema4a (ENSPEMG00000015516) #35	Slc25a44 (ENSPEMG00000013362) #37
Northern American deer mouse	MODERN SPECIES	17	Zdhhc5 (ENSPEMG00000006981)	Med19 (ENSPEMG00000000861)	Tmx2 (ENSPEMG00000011019)	Selenoh (ENSPEMG00000023658)	Btbd18 (ENSPEMG00000023753)	Ctnnd1 (ENSPEMG00000014308)	ENSPEMG00000027398	Tfpi (ENSPEMG00000029900)	Calcrl (ENSPEMG00000004539)	ENSPEMG00000031148	ENSPEMG00000031284	ENSPEMG00000028420	Or4c101 (ENSPEMG00000029270)	ENSPEMG00000025498	Or4c102 (ENSPEMG00000027551)	ENSPEMG00000023953 #22	ENSPEMG00000026984	ENSPEMG00000022676	ENSPEMG00000027562	Or4p4 (ENSPEMG00000007280)	ENSPEMG00000026067	Or4c103 (ENSPEMG00000025816)	ENSPEMG00000028253	ENSPEMG00000030857	ENSPEMG00000024959	ENSPEMG00000026182	ENSPEMG00000027813	Or4c108 (ENSPEMG00000031003)	ENSPEMG00000027767	ENSPEMG00000027838	ENSPEMG00000031019
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Dpm3 (ENSNGAG00000024342)	Slc50a1 (ENSNGAG00000024302)	Krtcap2 (ENSNGAG00000009292) #7	Trim46 (ENSNGAG00000005148) #8	ENSNGAG00000022998 #9	Thbs3 (ENSNGAG00000021188) #10	Mtx1 (ENSNGAG00000016342)	Gba (ENSNGAG00000014290)	Entrep3 (ENSNGAG00000008134) #11	Scamp3 (ENSNGAG00000001034) #12	Clk2 (ENSNGAG00000022518) #13	Hcn3 (ENSNGAG00000021908) #14	Pklr (ENSNGAG00000019876) #15	Rusc1 (ENSNGAG00000008260) #17	Ash1l (ENSNGAG00000021986) #19	Dap3 (ENSNGAG00000014173) #22	Msto1 (ENSNGAG00000022769) #20	Gon4l (ENSNGAG00000020844) #23	Syt11 (ENSNGAG00000013529) #24	Rit1 (ENSNGAG00000013104) #25	Khdc4 (ENSNGAG00000012421) #26	ENSNGAG00000011350 #28	ENSNGAG00000009107 #28	Ssr2 (ENSNGAG00000002859) #29	Ubqln4 (ENSNGAG00000020831) #30	Lamtor2 (ENSNGAG00000020249) #31	Rab25 (ENSNGAG00000019999) #32	Mex3a (ENSNGAG00000019587) #33	Lmna (ENSNGAG00000017368) #34	Sema4a (ENSNGAG00000012750) #35	Slc25a44 (ENSNGAG00000010575) #37
Lesser Egyptian jerboa	MODERN SPECIES	141	Efna1 (ENSJJAG00000018482)	Slc50a1 (ENSJJAG00000014643)	Dpm3 (ENSJJAG00000010361)	Krtcap2 (ENSJJAG00000022604) #7	Trim46 (ENSJJAG00000018124) #8	Thbs3 (ENSJJAG00000010105) #10	Mtx1 (ENSJJAG00000022072)	Gba (ENSJJAG00000015057)	ENSJJAG00000016523 #11	Scamp3 (ENSJJAG00000019763) #12	Clk2 (ENSJJAG00000020860) #13	Hcn3 (ENSJJAG00000017693) #14	Pklr (ENSJJAG00000019099) #15	Rusc1 (ENSJJAG00000001429) #17	Ash1l (ENSJJAG00000017942) #19	Dap3 (ENSJJAG00000010235) #22	Msto1 (ENSJJAG00000019140) #20	ENSJJAG00000013614 #23	ENSJJAG00000010636 #24	Rit1 (ENSJJAG00000023411) #25	ENSJJAG00000020627 #26	Rxfp4 (ENSJJAG00000013686)	ENSJJAG00000017646 #28	ENSJJAG00000016067 #28	Ssr2 (ENSJJAG00000024209) #29	Ubqln4 (ENSJJAG00000002118) #30	ENSJJAG00000021135 #31	Rab25 (ENSJJAG00000021013) #32	Mex3a (ENSJJAG00000020484) #33	Lmna (ENSJJAG00000019904) #34	Sema4a (ENSJJAG00000016229) #35
Kangaroo rat	MODERN SPECIES	345	Krtcap2 (ENSDORG00000011616) #7	Trim46 (ENSDORG00000011617) #8	Thbs3 (ENSDORG00000011619) #10	ENSDORG00000011620	Gba (ENSDORG00000011623)	ENSDORG00000011625 #11	Scamp3 (ENSDORG00000011626) #12	Clk2 (ENSDORG00000011628) #13	ENSDORG00000011629 #14	Pklr (ENSDORG00000011632) #15	ENSDORG00000028002	Fdps (ENSDORG00000005366) #16	ENSDORG00000024404 #17	ENSDORG00000025813 #17	Ash1l (ENSDORG00000025575) #19	Dap3 (ENSDORG00000003596) #22	Msto1 (ENSDORG00000029541) #20	Gon4l (ENSDORG00000003598) #23	Syt11 (ENSDORG00000023709) #24	Rit1 (ENSDORG00000014601) #25	Khdc4 (ENSDORG00000014602) #26	Arhgef2 (ENSDORG00000012162) #28	ENSDORG00000010536 #29	Ubqln4 (ENSDORG00000010538) #30	Lamtor2 (ENSDORG00000002923) #31	Rab25 (ENSDORG00000002922) #32	Mex3a (ENSDORG00000002921) #33	Lmna (ENSDORG00000002470) #34	Sema4a (ENSDORG00000008821) #35
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00960000188642	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00960000188642	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Long-tailed chinchilla	MODERN SPECIES	252	DPM3 (ENSCLAG00000004033)	ENSCLAG00000004535 #7	TRIM46 (ENSCLAG00000003999) #8	ENSCLAG00000004137 #9	THBS3 (ENSCLAG00000004613) #10	ENSCLAG00000005120	GBA1 (ENSCLAG00000005452)	ENTREP3 (ENSCLAG00000003287) #11	SCAMP3 (ENSCLAG00000003649) #12	CLK2 (ENSCLAG00000003873) #13	HCN3 (ENSCLAG00000005021) #14	PKLR (ENSCLAG00000005136) #15	FDPS (ENSCLAG00000005410) #16	RUSC1 (ENSCLAG00000005579) #17	ASH1L (ENSCLAG00000004536) #19	DAP3 (ENSCLAG00000005599) #22	MSTO1 (ENSCLAG00000006273) #20	ENSCLAG00000006556 #23	SYT11 (ENSCLAG00000013172) #24	RIT1 (ENSCLAG00000013305) #25	KHDC4 (ENSCLAG00000010544) #26	ARHGEF2 (ENSCLAG00000013596) #28	SSR2 (ENSCLAG00000003363) #29	UBQLN4 (ENSCLAG00000003519) #30	LAMTOR2 (ENSCLAG00000003700) #31	RAB25 (ENSCLAG00000003784) #32	MEX3A (ENSCLAG00000003842) #33	LMNA (ENSCLAG00000003894) #34	SEMA4A (ENSCLAG00000005297) #35	SLC25A44 (ENSCLAG00000005587) #37	PMF1 (ENSCLAG00000003672)
Degu	MODERN SPECIES	73	DPM3 (ENSODEG00000019810)	ENSODEG00000010582 #7	TRIM46 (ENSODEG00000010418) #8	ENSODEG00000009984 #9	THBS3 (ENSODEG00000009938) #10	ENSODEG00000011167	GBA1 (ENSODEG00000010430)	ENTREP3 (ENSODEG00000010722) #11	SCAMP3 (ENSODEG00000010051) #12	CLK2 (ENSODEG00000009701) #13	HCN3 (ENSODEG00000009743) #14	PKLR (ENSODEG00000011272) #15	FDPS (ENSODEG00000010515) #16	ENSODEG00000010812 #17	ASH1L (ENSODEG00000009920) #19	DAP3 (ENSODEG00000010674) #22	MSTO1 (ENSODEG00000011191) #20	ENSODEG00000010737	ENSODEG00000011008 #23	SYT11 (ENSODEG00000010870) #24	RIT1 (ENSODEG00000010128) #25	ENSODEG00000009528 #26	ENSODEG00000019992 #27	ARHGEF2 (ENSODEG00000011373) #28	SSR2 (ENSODEG00000010659) #29	UBQLN4 (ENSODEG00000010901) #30	LAMTOR2 (ENSODEG00000010141) #31	RAB25 (ENSODEG00000009908) #32	MEX3A (ENSODEG00000009643) #33	LMNA (ENSODEG00000009369) #34	SEMA4A (ENSODEG00000009359) #35
Guinea pig	MODERN SPECIES	10	DPM3 (ENSCPOG00000019638)	KRTCAP2 (ENSCPOG00000030898) #7	TRIM46 (ENSCPOG00000022179) #8	ENSCPOG00000034833 #9	THBS3 (ENSCPOG00000003165) #10	ENSCPOG00000024733	GBA1 (ENSCPOG00000003173)	ENTREP3 (ENSCPOG00000003175) #11	SCAMP3 (ENSCPOG00000021356) #12	CLK2 (ENSCPOG00000003176) #13	HCN3 (ENSCPOG00000027026) #14	PKLR (ENSCPOG00000011202) #15	FDPS (ENSCPOG00000015363) #16	RUSC1 (ENSCPOG00000032934) #17	ASH1L (ENSCPOG00000004801) #19	DAP3 (ENSCPOG00000030924) #22	MSTO1 (ENSCPOG00000004857) #20	ENSCPOG00000004859 #23	SYT11 (ENSCPOG00000004866) #24	RIT1 (ENSCPOG00000004868) #25	KHDC4 (ENSCPOG00000004870) #26	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #28	SSR2 (ENSCPOG00000023729) #29	UBQLN4 (ENSCPOG00000002467) #30	LAMTOR2 (ENSCPOG00000032238) #31	RAB25 (ENSCPOG00000002472) #32	MEX3A (ENSCPOG00000020219) #33	LMNA (ENSCPOG00000023214) #34	SEMA4A (ENSCPOG00000015694) #35	SLC25A44 (ENSCPOG00000021129) #37
Naked mole-rat female	MODERN SPECIES	10												ENSHGLG00000005618 #16	ENSHGLG00000006300 #17	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090) #19	DAP3 (ENSHGLG00000013978) #22	MSTO1 (ENSHGLG00000018369) #20	ENSHGLG00000006556 #23	SYT11 (ENSHGLG00000032288) #24	ENSHGLG00000034706 #25	KHDC4 (ENSHGLG00000010495) #26	RXFP4 (ENSHGLG00000037004)	SSR2 (ENSHGLG00000035940) #29	UBQLN4 (ENSHGLG00000003684) #30	LAMTOR2 (ENSHGLG00000036352) #31	RAB25 (ENSHGLG00000005517) #32	MEX3A (ENSHGLG00000041429) #33	ENSHGLG00000036594 #34	SEMA4A (ENSHGLG00000003587) #35	SLC25A44 (ENSHGLG00000042222) #37	ENSHGLG00000007944
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132.e #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Marmotini	ANCESTRAL SPECIES	33	ENSGT00390000008892	ENSGT00390000003552.bb #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132.e #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00390000008892	ENSGT00390000003552.bb #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132.e #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	309	DPM3 (ENSUPAG00010002136)	ENSUPAG00010002150 #7	TRIM46 (ENSUPAG00010002170) #8	ENSUPAG00010002228 #9	THBS3 (ENSUPAG00010002468) #10	MTX1 (ENSUPAG00010002540)	GBA1 (ENSUPAG00010002556)	ENTREP3 (ENSUPAG00010002563) #11	SCAMP3 (ENSUPAG00010002631) #12	CLK2 (ENSUPAG00010002672) #13	HCN3 (ENSUPAG00010002732) #14	PKLR (ENSUPAG00010002743) #15	FDPS (ENSUPAG00010002775) #16	RUSC1 (ENSUPAG00010002787) #17	ASH1L (ENSUPAG00010002818) #19	ENSUPAG00010002886 #22	MSTO1 (ENSUPAG00010002943) #20	ENSUPAG00010002975 #23	SYT11 (ENSUPAG00010003045) #24	ENSUPAG00010003055 #25	KHDC4 (ENSUPAG00010003067) #26	ENSUPAG00010003101 #27	ARHGEF2 (ENSUPAG00010003114) #28	SSR2 (ENSUPAG00010003598) #29	UBQLN4 (ENSUPAG00010003613) #30	LAMTOR2 (ENSUPAG00010003634) #31	RAB25 (ENSUPAG00010003640) #32	MEX3A (ENSUPAG00010003653) #33	LMNA (ENSUPAG00010003669) #34	SEMA4A (ENSUPAG00010003712) #35	SLC25A44 (ENSUPAG00010004013) #37
Arctic ground squirrel	MODERN SPECIES	948														ENSUPAG00010001780	ENSUPAG00010001751	ENSUPAG00010001716 #22	ENSUPAG00010001626
Squirrel	MODERN SPECIES	180	DPM3 (ENSSTOG00000008825)	KRTCAP2 (ENSSTOG00000008829) #7	TRIM46 (ENSSTOG00000008841) #8	ENSSTOG00000029509 #9	THBS3 (ENSSTOG00000008887) #10	ENSSTOG00000008910	GBA1 (ENSSTOG00000008919)	ENTREP3 (ENSSTOG00000025508) #11	SCAMP3 (ENSSTOG00000008956) #12	CLK2 (ENSSTOG00000008974) #13	HCN3 (ENSSTOG00000008989) #14	PKLR (ENSSTOG00000022480) #15	ENSSTOG00000004475 #16	RUSC1 (ENSSTOG00000004516) #17	ASH1L (ENSSTOG00000019952) #19	DAP3 (ENSSTOG00000004627) #22	MSTO1 (ENSSTOG00000004655) #20	ENSSTOG00000004664 #23	SYT11 (ENSSTOG00000004720) #24	RIT1 (ENSSTOG00000021028) #25	KHDC4 (ENSSTOG00000004732) #26	RXFP4 (ENSSTOG00000000616)	ARHGEF2 (ENSSTOG00000000620) #28	SSR2 (ENSSTOG00000028971) #29	UBQLN4 (ENSSTOG00000020043) #30	LAMTOR2 (ENSSTOG00000023389) #31	RAB25 (ENSSTOG00000000634) #32	MEX3A (ENSSTOG00000024275) #33	LMNA (ENSSTOG00000001758) #34	SEMA4A (ENSSTOG00000028050) #35	SLC25A44 (ENSSTOG00000001764) #37
Alpin marmot	MODERN SPECIES	85	DPM3 (ENSMMMG00000015719)	ENSMMMG00000015696 #7	TRIM46 (ENSMMMG00000015651) #8	ENSMMMG00000014725 #9	THBS3 (ENSMMMG00000014667) #10	MTX1 (ENSMMMG00000014655)	GBA1 (ENSMMMG00000014631)	ENTREP3 (ENSMMMG00000014536) #11	SCAMP3 (ENSMMMG00000014515) #12	CLK2 (ENSMMMG00000014477) #13	HCN3 (ENSMMMG00000014457) #14	PKLR (ENSMMMG00000014412) #15	FDPS (ENSMMMG00000014395) #16	ENSMMMG00000014387 #17	ASH1L (ENSMMMG00000014324) #19	DAP3 (ENSMMMG00000014245) #22	MSTO1 (ENSMMMG00000014213) #20	ENSMMMG00000014163 #23	SYT11 (ENSMMMG00000014151) #24	ENSMMMG00000014145 #25	KHDC4 (ENSMMMG00000014104) #26	RXFP4 (ENSMMMG00000014101)	ARHGEF2 (ENSMMMG00000013899) #28	SSR2 (ENSMMMG00000013889) #29	UBQLN4 (ENSMMMG00000013874) #30	LAMTOR2 (ENSMMMG00000013864) #31	RAB25 (ENSMMMG00000013857) #32	MEX3A (ENSMMMG00000013855) #33	LMNA (ENSMMMG00000013831) #34	SEMA4A (ENSMMMG00000013785) #35	SLC25A44 (ENSMMMG00000013773) #37
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01090000260051.b.b #27	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Rabbit	MODERN SPECIES	4	ENSOCUG00000000347 #7	TRIM46 (ENSOCUG00000000349) #8	MUC1 (ENSOCUG00000023957) #9	THBS3 (ENSOCUG00000010032) #10	MTX1 (ENSOCUG00000000353)	GBA1 (ENSOCUG00000000356)	ENTREP3 (ENSOCUG00000010041) #11	SCAMP3 (ENSOCUG00000034998) #12	CLK2 (ENSOCUG00000000359) #13	HCN3 (ENSOCUG00000014965) #14	PKLR (ENSOCUG00000014969) #15	FDPS (ENSOCUG00000033536) #16	ENSOCUG00000038913 #17	ASH1L (ENSOCUG00000014986) #19	ENSOCUG00000034353	DAP3 (ENSOCUG00000004785) #22	MSTO1 (ENSOCUG00000010186) #20	ENSOCUG00000010191 #23	ENSOCUG00000026145 #23	SYT11 (ENSOCUG00000027971) #24	RIT1 (ENSOCUG00000006377) #25	KHDC4 (ENSOCUG00000010430) #26	ENSOCUG00000026819 #27	ARHGEF2 (ENSOCUG00000001937) #28	SSR2 (ENSOCUG00000008455) #29	UBQLN4 (ENSOCUG00000007156) #30	LAMTOR2 (ENSOCUG00000027994) #31	RAB25 (ENSOCUG00000005634) #32	ENSOCUG00000005640 #33	LMNA (ENSOCUG00000010011) #34	SEMA4A (ENSOCUG00000001326) #35
Pika	MODERN SPECIES	7100																DAP3 (ENSOPRG00000015884) #22
Tree shrew	MODERN SPECIES	1455																ENSTBEG00000000321 #22
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Suina	ANCESTRAL SPECIES	8	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Chacoan peccary	MODERN SPECIES	139	KRTCAP2 (ENSCWAG00000019991) #7	TRIM46 (ENSCWAG00000020036) #8	ENSCWAG00000020249 #9	THBS3 (ENSCWAG00000020320) #10	MTX1 (ENSCWAG00000020394)	GBA1 (ENSCWAG00000020410)	ENTREP3 (ENSCWAG00000020452) #11	SCAMP3 (ENSCWAG00000020503) #12	CLK2 (ENSCWAG00000020522) #13	HCN3 (ENSCWAG00000020562) #14	PKLR (ENSCWAG00000020577) #15	FDPS (ENSCWAG00000020618) #16	RUSC1 (ENSCWAG00000020663) #17	ASH1L (ENSCWAG00000020727) #19	ENSCWAG00000020755	DAP3 (ENSCWAG00000020775) #22	MSTO1 (ENSCWAG00000020845) #20	ENSCWAG00000020896 #23	SYT11 (ENSCWAG00000020979) #24	RIT1 (ENSCWAG00000020995) #25	KHDC4 (ENSCWAG00000007841) #26	ENSCWAG00000007912 #27	ARHGEF2 (ENSCWAG00000007966) #28	SSR2 (ENSCWAG00000008262) #29	UBQLN4 (ENSCWAG00000008403) #30	LAMTOR2 (ENSCWAG00000008520) #31	RAB25 (ENSCWAG00000008570) #32	MEX3A (ENSCWAG00000008643) #33	LMNA (ENSCWAG00000008705) #34	SEMA4A (ENSCWAG00000009047) #35	SLC25A44 (ENSCWAG00000009427) #37
Pig	MODERN SPECIES	12	KRTCAP2 (ENSSSCG00000006527) #7	TRIM46 (ENSSSCG00000006526) #8	ENSSSCG00000006525 #9	THBS3 (ENSSSCG00000006524) #10	MTX1 (ENSSSCG00000006523)	GBA1 (ENSSSCG00000006522)	ENTREP3 (ENSSSCG00000006521) #11	SCAMP3 (ENSSSCG00000006520) #12	CLK2 (ENSSSCG00000006519) #13	HCN3 (ENSSSCG00000006518) #14	PKLR (ENSSSCG00000026149) #15	FDPS (ENSSSCG00000006512) #16	RUSC1 (ENSSSCG00000006511) #17	ENSSSCG00000040632	ASH1L (ENSSSCG00000006508) #19	DAP3 (ENSSSCG00000006507) #22	MSTO1 (ENSSSCG00000006157) #20	ENSSSCG00000006510 #23	SYT11 (ENSSSCG00000006506) #24	RIT1 (ENSSSCG00000023991) #25	KHDC4 (ENSSSCG00000006504) #26	RXFP4 (ENSSSCG00000006503)	ARHGEF2 (ENSSSCG00000006502) #28	SSR2 (ENSSSCG00000006501) #29	UBQLN4 (ENSSSCG00000006500) #30	LAMTOR2 (ENSSSCG00000006499) #31	RAB25 (ENSSSCG00000039186) #32	MEX3A (ENSSSCG00000006497) #33	LMNA (ENSSSCG00000006496) #34	SEMA4A (ENSSSCG00000006495) #35	SLC25A44 (ENSSSCG00000006494) #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Cetacea	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.k #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.k #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100.g.a #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.k #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100.g.a #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.k #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100.g.a #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.k #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100.g.a #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Narwhal	MODERN SPECIES	304	DPM3 (ENSMMNG00015013357)	KRTCAP2 (ENSMMNG00015013346) #7	TRIM46 (ENSMMNG00015013308) #8	ENSMMNG00015013111 #9	THBS3 (ENSMMNG00015012940) #10	MTX1 (ENSMMNG00015012874)	GBA1 (ENSMMNG00015012842)	ENTREP3 (ENSMMNG00015012795) #11	SCAMP3 (ENSMMNG00015012743) #12	CLK2 (ENSMMNG00015012695) #13	HCN3 (ENSMMNG00015012673) #14	PKLR (ENSMMNG00015012630) #15	ENSMMNG00015012598 #16	RUSC1 (ENSMMNG00015012570) #17	ASH1L (ENSMMNG00015012492) #19	DAP3 (ENSMMNG00015012383) #22	MSTO1 (ENSMMNG00015012309) #20	ENSMMNG00015012250 #23	SYT11 (ENSMMNG00015012196) #24	RIT1 (ENSMMNG00015012172) #25	KHDC4 (ENSMMNG00015012142) #26	ARHGEF2 (ENSMMNG00015012060) #28	SSR2 (ENSMMNG00015012014) #29	UBQLN4 (ENSMMNG00015011968) #30	ENSMMNG00015011942 #31	RAB25 (ENSMMNG00015011919) #32	MEX3A (ENSMMNG00015011903) #33	LMNA (ENSMMNG00015011841) #34	SEMA4A (ENSMMNG00015011785) #35	SLC25A44 (ENSMMNG00015011755) #37	ENSMMNG00015011739
Beluga whale	MODERN SPECIES	69	SLC50A1 (ENSDLEG00000010896)	DPM3 (ENSDLEG00000010904)	KRTCAP2 (ENSDLEG00000010914) #7	TRIM46 (ENSDLEG00000010978) #8	ENSDLEG00000011796 #9	THBS3 (ENSDLEG00000012305) #10	MTX1 (ENSDLEG00000015096)	GBA1 (ENSDLEG00000015111)	FAM189B (ENSDLEG00000015147) #11	SCAMP3 (ENSDLEG00000015441) #13	HCN3 (ENSDLEG00000015901) #14	PKLR (ENSDLEG00000015946) #15	FDPS (ENSDLEG00000016328) #16	RUSC1 (ENSDLEG00000016359) #17	ASH1L (ENSDLEG00000016452) #19	DAP3 (ENSDLEG00000016565) #22	MSTO1 (ENSDLEG00000017154) #20	ENSDLEG00000017562 #23	SYT11 (ENSDLEG00000017715) #24	RIT1 (ENSDLEG00000017727) #25	KIAA0907 (ENSDLEG00000017767) #26	ARHGEF2 (ENSDLEG00000018134) #28	SSR2 (ENSDLEG00000019690) #29	UBQLN4 (ENSDLEG00000019705) #30	ENSDLEG00000019714 #31	RAB25 (ENSDLEG00000019718) #32	LMNA (ENSDLEG00000019723) #34	MEX3A (ENSDLEG00000019727) #33	SEMA4A (ENSDLEG00000019729) #35	SLC25A44 (ENSDLEG00000019739) #37	ENSDLEG00000019747
Vaquita	MODERN SPECIES		DPM3 (ENSPSNG00000004007)	KRTCAP2 (ENSPSNG00000004015) #7	TRIM46 (ENSPSNG00000004050) #8	ENSPSNG00000004088 #9	THBS3 (ENSPSNG00000000025) #10	MTX1 (ENSPSNG00000000076)	GBA1 (ENSPSNG00000000184)	ENSPSNG00000000334 #11	SCAMP3 (ENSPSNG00000000384) #12	CLK2 (ENSPSNG00000000440) #13	HCN3 (ENSPSNG00000000564) #14	PKLR (ENSPSNG00000000611) #15	ENSPSNG00000000654 #16	RUSC1 (ENSPSNG00000000714) #17	ASH1L (ENSPSNG00000000798) #19	DAP3 (ENSPSNG00000000898) #22	MSTO1 (ENSPSNG00000000978) #20	ENSPSNG00000001061 #23	SYT11 (ENSPSNG00000001267) #24	RIT1 (ENSPSNG00000001303) #25	KHDC4 (ENSPSNG00000001328) #26	ARHGEF2 (ENSPSNG00000001483) #28	SSR2 (ENSPSNG00000001665) #29	UBQLN4 (ENSPSNG00000001709) #30	ENSPSNG00000001753 #31	RAB25 (ENSPSNG00000001780) #32	MEX3A (ENSPSNG00000001802) #33	LMNA (ENSPSNG00000001902) #34	SEMA4A (ENSPSNG00000001991) #35	SLC25A44 (ENSPSNG00000002061) #37	ENSPSNG00000002083
Dolphin	MODERN SPECIES	1344													FDPS (ENSTTRG00000013326) #16	RUSC1 (ENSTTRG00000013327) #17	ASH1L (ENSTTRG00000013329) #19	DAP3 (ENSTTRG00000013332) #22	ENSTTRG00000013334	ENSTTRG00000013336 #23	SYT11 (ENSTTRG00000013337) #24	RIT1 (ENSTTRG00000013338) #25	KHDC4 (ENSTTRG00000013339) #26	ARHGEF2 (ENSTTRG00000013341) #28	SSR2 (ENSTTRG00000013342) #29	UBQLN4 (ENSTTRG00000013343) #30	LAMTOR2 (ENSTTRG00000013344) #31	RAB25 (ENSTTRG00000013345) #32	MEX3A (ENSTTRG00000013346) #33
Sperm whale	MODERN SPECIES	15	ENSPCTG00005015382	TPM3 (ENSPCTG00005014890)	CFAP141 (ENSPCTG00005014779)	C4H1orf43 (ENSPCTG00005014264)	UBAP2L (ENSPCTG00005013404)	HAX1 (ENSPCTG00005013017)	IL6R (ENSPCTG00005012978)	SHE (ENSPCTG00005012880)	TDRD10 (ENSPCTG00005012748)	EFNA3 (ENSPCTG00005012694)	PBXIP1 (ENSPCTG00005012606)	SHC1 (ENSPCTG00005012451)	ADAR (ENSPCTG00005012266)	KCNN3 (ENSPCTG00005012225)	ASH1L (ENSPCTG00005012095) #19	DAP3 (ENSPCTG00005011863) #22	MSTO1 (ENSPCTG00005011784) #20	GON4L (ENSPCTG00005011256) #23	SYT11 (ENSPCTG00005011179) #24	RIT1 (ENSPCTG00005011092) #25	SSR2 (ENSPCTG00005010954) #29	UBQLN4 (ENSPCTG00005010892) #30	LAMTOR2 (ENSPCTG00005010831) #31	RAB25 (ENSPCTG00005010780) #32	SMG5 (ENSPCTG00005010741)	PAQR6 (ENSPCTG00005010635)	BGLAP (ENSPCTG00005010569)	PMF1 (ENSPCTG00005010461)	SLC25A44 (ENSPCTG00005010382) #37	ENSPCTG00005010364	ENSPCTG00005010348
Blue whale	MODERN SPECIES		DPM3 (ENSBMSG00010002444)	KRTCAP2 (ENSBMSG00010002459) #7	TRIM46 (ENSBMSG00010002489) #8	ENSBMSG00010002706 #9	THBS3 (ENSBMSG00010002826) #10	MTX1 (ENSBMSG00010002899)	GBA1 (ENSBMSG00010002926)	ENTREP3 (ENSBMSG00010002966) #11	SCAMP3 (ENSBMSG00010003031) #12	CLK2 (ENSBMSG00010003067) #13	ENSBMSG00010003104 #14	PKLR (ENSBMSG00010003143) #15	ENSBMSG00010003229 #16	RUSC1 (ENSBMSG00010003260) #17	ASH1L (ENSBMSG00010003357) #19	DAP3 (ENSBMSG00010003437) #22	MSTO1 (ENSBMSG00010003477) #20	ENSBMSG00010003566 #23	ENSBMSG00010004110	SYT11 (ENSBMSG00010004119) #24	RIT1 (ENSBMSG00010004147) #25	KHDC4 (ENSBMSG00010004174) #26	ARHGEF2 (ENSBMSG00010004265) #28	SSR2 (ENSBMSG00010004540) #29	UBQLN4 (ENSBMSG00010004574) #30	LAMTOR2 (ENSBMSG00010004612) #31	RAB25 (ENSBMSG00010004624) #32	MEX3A (ENSBMSG00010004637) #33	LMNA (ENSBMSG00010004668) #34	SEMA4A (ENSBMSG00010004700) #35	SLC25A44 (ENSBMSG00010004726) #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Rambouillet Sheep	MODERN SPECIES		KRTCAP2 (ENSOARG00020008445) #7	TRIM46 (ENSOARG00020008492) #8	ENSOARG00020008683 #9	THBS3 (ENSOARG00020008790) #10	MTX1 (ENSOARG00020009816)	GBA1 (ENSOARG00020010312)	ENTREP3 (ENSOARG00020010477) #11	SCAMP3 (ENSOARG00020011250) #12	CLK2 (ENSOARG00020011438) #13	HCN3 (ENSOARG00020011745) #14	PKLR (ENSOARG00020011831) #15	FDPS (ENSOARG00020012121) #16	RUSC1 (ENSOARG00020012314) #17	ASH1L (ENSOARG00020012553) #19	ENSOARG00020012690	DAP3 (ENSOARG00020012723) #22	MSTO1 (ENSOARG00020013057) #20	ENSOARG00020013143 #23	ENSOARG00020013192 #23	ENSOARG00020013774 #23	SYT11 (ENSOARG00020013872) #24	RIT1 (ENSOARG00020013942) #25	KHDC4 (ENSOARG00020014119) #26	RXFP4 (ENSOARG00020014277)	ARHGEF2 (ENSOARG00020014346) #28	SSR2 (ENSOARG00020015600) #29	ENSOARG00020015739	UBQLN4 (ENSOARG00020015789) #30	LAMTOR2 (ENSOARG00020015838) #31	RAB25 (ENSOARG00020015913) #32	MEX3A (ENSOARG00020015946) #33
Goat	MODERN SPECIES	22	DPM3 (ENSCHIG00000001909)	KRTCAP2 (ENSCHIG00000018359) #7	TRIM46 (ENSCHIG00000009809) #8	ENSCHIG00000022221 #9	THBS3 (ENSCHIG00000016028) #10	MTX1 (ENSCHIG00000012849)	GBA1 (ENSCHIG00000026113)	ENTREP3 (ENSCHIG00000020631) #11	SCAMP3 (ENSCHIG00000005189) #12	CLK2 (ENSCHIG00000025142) #13	HCN3 (ENSCHIG00000017666) #14	PKLR (ENSCHIG00000006078) #15	FDPS (ENSCHIG00000020170) #16	RUSC1 (ENSCHIG00000014020) #17	ASH1L (ENSCHIG00000026354) #19	DAP3 (ENSCHIG00000017638) #22	MSTO1 (ENSCHIG00000027233) #20	ENSCHIG00000021776 #23	ENSCHIG00000011207 #23	ENSCHIG00000025192 #23	SYT11 (ENSCHIG00000021455) #24	RIT1 (ENSCHIG00000010506) #25	KHDC4 (ENSCHIG00000022965) #26	ENSCHIG00000012796 #27	ARHGEF2 (ENSCHIG00000018812) #28	SSR2 (ENSCHIG00000027199) #29	UBQLN4 (ENSCHIG00000015053) #30	LAMTOR2 (ENSCHIG00000026461) #31	RAB25 (ENSCHIG00000018911) #32	MEX3A (ENSCHIG00000012770) #33	LMNA (ENSCHIG00000022777) #34
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Bos	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Cow	MODERN SPECIES	22	DPM3 (ENSBTAG00000003535)	KRTCAP2 (ENSBTAG00000010617) #7	TRIM46 (ENSBTAG00000010622) #8	MUC1 (ENSBTAG00000017104) #9	THBS3 (ENSBTAG00000000057) #10	MTX1 (ENSBTAG00000014840)	GBA1 (ENSBTAG00000014841)	ENTREP3 (ENSBTAG00000047731) #11	SCAMP3 (ENSBTAG00000012094) #12	CLK2 (ENSBTAG00000014393) #13	HCN3 (ENSBTAG00000017055) #14	PKLR (ENSBTAG00000017056) #15	FDPS (ENSBTAG00000003948) #16	RUSC1 (ENSBTAG00000054061) #17	ASH1L (ENSBTAG00000003954) #19	DAP3 (ENSBTAG00000001199) #22	MSTO1 (ENSBTAG00000026613) #20	ENSBTAG00000045596 #23	GON4L (ENSBTAG00000020356) #23	SYT11 (ENSBTAG00000011209) #24	RIT1 (ENSBTAG00000000105) #25	KHDC4 (ENSBTAG00000000108)	ARHGEF2 (ENSBTAG00000000113) #28	SSR2 (ENSBTAG00000001212) #29	UBQLN4 (ENSBTAG00000001548) #30	LAMTOR2 (ENSBTAG00000011754) #31	RAB25 (ENSBTAG00000018914) #32	MEX3A (ENSBTAG00000019158) #33	LMNA (ENSBTAG00000017574) #34	SEMA4A (ENSBTAG00000012228) #35	SLC25A44 (ENSBTAG00000009431) #37
Hybrid Bos Indicus	MODERN SPECIES	22	DPM3 (ENSBIXG00005011141)	KRTCAP2 (ENSBIXG00005011163) #7	TRIM46 (ENSBIXG00005001058) #8	ENSBIXG00005001068 #9	THBS3 (ENSBIXG00005011353) #10	MTX1 (ENSBIXG00005001107)	GBA1 (ENSBIXG00005011493)	ENTREP3 (ENSBIXG00005011640) #11	CLK2 (ENSBIXG00005011775) #13	SCAMP3 (ENSBIXG00005006790) #12	HCN3 (ENSBIXG00005011927) #14	PKLR (ENSBIXG00005012018) #15	FDPS (ENSBIXG00005012083) #16	RUSC1 (ENSBIXG00005012185) #17	ASH1L (ENSBIXG00005012290) #19	DAP3 (ENSBIXG00005012416) #22	MSTO1 (ENSBIXG00005012454) #20	ENSBIXG00005000325 #23	SYT11 (ENSBIXG00005012585) #24	RIT1 (ENSBIXG00005012630) #25	KHDC4 (ENSBIXG00005012701) #26	ENSBIXG00005012726 #27	ARHGEF2 (ENSBIXG00005012933) #28	SSR2 (ENSBIXG00005013052) #29	UBQLN4 (ENSBIXG00005007481) #30	LAMTOR2 (ENSBIXG00005013118) #31	RAB25 (ENSBIXG00005001504) #32	MEX3A (ENSBIXG00005013155) #33	LMNA (ENSBIXG00005013303) #34	SEMA4A (ENSBIXG00005013357) #35	SLC25A44 (ENSBIXG00005013383) #37
Bos_a	ANCESTRAL SPECIES	27	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.i.a.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Domestic yak	MODERN SPECIES	22	KRTCAP2 (ENSBGRG00000017001) #7	TRIM46 (ENSBGRG00000017102) #8	ENSBGRG00000017569 #9	THBS3 (ENSBGRG00000017890) #10	MTX1 (ENSBGRG00000018334)	GBA1 (ENSBGRG00000018500)	ENTREP3 (ENSBGRG00000018861) #11	SCAMP3 (ENSBGRG00000019418) #12	CLK2 (ENSBGRG00000019609) #13	HCN3 (ENSBGRG00000019871) #14	PKLR (ENSBGRG00000019966) #15	FDPS (ENSBGRG00000020272) #16	RUSC1 (ENSBGRG00000020363) #17	ASH1L (ENSBGRG00000020526) #19	ENSBGRG00000020578	ENSBGRG00000020608 #22	MSTO1 (ENSBGRG00000020857) #20	ENSBGRG00000021040 #23	ENSBGRG00000021483	ENSBGRG00000021494 #23	SYT11 (ENSBGRG00000021562) #24	RIT1 (ENSBGRG00000021581) #25	KHDC4 (ENSBGRG00000021657) #26	ENSBGRG00000021933 #27	ARHGEF2 (ENSBGRG00000022001) #28	SSR2 (ENSBGRG00000022293) #29	ENSBGRG00000022398	UBQLN4 (ENSBGRG00000022445) #30	ENSBGRG00000022629 #31	RAB25 (ENSBGRG00000022700) #32	MEX3A (ENSBGRG00000022736) #33
Wild yak	MODERN SPECIES	1034	KRTCAP2 (ENSBMUG00000012406) #7	TRIM46 (ENSBMUG00000012463) #8	ENSBMUG00000012502 #9	THBS3 (ENSBMUG00000012603) #10	MTX1 (ENSBMUG00000012654)	GBA1 (ENSBMUG00000012794)	ENTREP3 (ENSBMUG00000012878) #11	ENSBMUG00000012899	SCAMP3 (ENSBMUG00000012946) #12	CLK2 (ENSBMUG00000012989) #13	HCN3 (ENSBMUG00000013008) #14	PKLR (ENSBMUG00000013109) #15	FDPS (ENSBMUG00000013151) #16	RUSC1 (ENSBMUG00000013186) #17	ASH1L (ENSBMUG00000013247) #19	DAP3 (ENSBMUG00000013380) #22	MSTO1 (ENSBMUG00000013423) #20	ENSBMUG00000013609 #23	SYT11 (ENSBMUG00000013663) #24	RIT1 (ENSBMUG00000013671) #25	KHDC4 (ENSBMUG00000013747) #26	ENSBMUG00000013792 #27	ARHGEF2 (ENSBMUG00000013945) #28	SSR2 (ENSBMUG00000014061) #29	UBQLN4 (ENSBMUG00000014079) #30	ENSBMUG00000014101 #31	RAB25 (ENSBMUG00000014113) #32	MEX3A (ENSBMUG00000014139) #33	LMNA (ENSBMUG00000014271) #34	SEMA4A (ENSBMUG00000014414) #35	SLC25A44 (ENSBMUG00000014438) #37
American bison	MODERN SPECIES	3022	KRTCAP2 (ENSBBBG00000002879) #7	TRIM46 (ENSBBBG00000003385) #8	ENSBBBG00000014764 #9	THBS3 (ENSBBBG00000001241) #10	MTX1 (ENSBBBG00000001149)	GBA1 (ENSBBBG00000001067)	ENTREP3 (ENSBBBG00000000968) #11	SCAMP3 (ENSBBBG00000000928) #12	CLK2 (ENSBBBG00000000879) #13	HCN3 (ENSBBBG00000000841) #14	PKLR (ENSBBBG00000014928) #15	FDPS (ENSBBBG00000014941) #16	ENSBBBG00000014944 #17	ENSBBBG00000014947 #17	ASH1L (ENSBBBG00000014991) #19	DAP3 (ENSBBBG00000003747) #22	MSTO1 (ENSBBBG00000015135) #20	ENSBBBG00000015141	ENSBBBG00000007558 #23	SYT11 (ENSBBBG00000003798) #24	RIT1 (ENSBBBG00000015315) #25	KHDC4 (ENSBBBG00000001328) #26	RXFP4 (ENSBBBG00000001313)	ARHGEF2 (ENSBBBG00000001262) #28	SSR2 (ENSBBBG00000003501) #29	UBQLN4 (ENSBBBG00000007559) #30	LAMTOR2 (ENSBBBG00000003825) #31	RAB25 (ENSBBBG00000003829) #32	MEX3A (ENSBBBG00000015363) #33	LMNA (ENSBBBG00000003866) #34	SEMA4A (ENSBBBG00000003444) #35
Siberian musk deer	MODERN SPECIES	1202	DPM3 (ENSMMSG00000009023)	KRTCAP2 (ENSMMSG00000008977) #7	TRIM46 (ENSMMSG00000008493) #8	ENSMMSG00000008389 #9	THBS3 (ENSMMSG00000008161) #10	MTX1 (ENSMMSG00000008121)	GBA1 (ENSMMSG00000007999)	ENTREP3 (ENSMMSG00000007811) #11	SCAMP3 (ENSMMSG00000007666) #12	CLK2 (ENSMMSG00000007494) #13	HCN3 (ENSMMSG00000007440) #14	PKLR (ENSMMSG00000007243) #15	FDPS (ENSMMSG00000007131) #16	RUSC1 (ENSMMSG00000007079) #17	ASH1L (ENSMMSG00000006966) #19	DAP3 (ENSMMSG00000006783) #22	MSTO1 (ENSMMSG00000006647) #20	ENSMMSG00000006603 #23	ENSMMSG00000005075 #23	SYT11 (ENSMMSG00000004948) #24	RIT1 (ENSMMSG00000004820) #25	KHDC4 (ENSMMSG00000022609) #26	RXFP4 (ENSMMSG00000022594)	ARHGEF2 (ENSMMSG00000022532) #28	SSR2 (ENSMMSG00000022486) #29	UBQLN4 (ENSMMSG00000022457) #30	LAMTOR2 (ENSMMSG00000022447) #31	RAB25 (ENSMMSG00000022435) #32	MEX3A (ENSMMSG00000022428) #33	LMNA (ENSMMSG00000022290) #34	ENSMMSG00000022232
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	DPM3 (ENSCHYG00000006565)	KRTCAP2 (ENSCHYG00000006541) #7	TRIM46 (ENSCHYG00000006401) #8	ENSCHYG00000006354 #9	THBS3 (ENSCHYG00000005615) #10	MTX1 (ENSCHYG00000005492)	GBA1 (ENSCHYG00000005419)	ENTREP3 (ENSCHYG00000005019) #11	SCAMP3 (ENSCHYG00000004931) #12	CLK2 (ENSCHYG00000004875) #13	HCN3 (ENSCHYG00000004855) #14	PKLR (ENSCHYG00000004833) #15	FDPS (ENSCHYG00000026456) #16	RUSC1 (ENSCHYG00000026489) #17	ASH1L (ENSCHYG00000026415) #19	ENSCHYG00000026325 #22	MSTO1 (ENSCHYG00000026231) #20	SYT11 (ENSCHYG00000026203) #24	RIT1 (ENSCHYG00000026149) #25	KHDC4 (ENSCHYG00000025994) #26	ENSCHYG00000025955 #27	ARHGEF2 (ENSCHYG00000025091) #28	SSR2 (ENSCHYG00000024941) #29	UBQLN4 (ENSCHYG00000024829) #30	ENSCHYG00000024792 #31	RAB25 (ENSCHYG00000024758) #32	MEX3A (ENSCHYG00000024742) #33	LMNA (ENSCHYG00000024365) #34	SEMA4A (ENSCHYG00000024199) #35	SLC25A44 (ENSCHYG00000024104) #37	ENSCHYG00000024011
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000008418	SHOC2 (ENSCHYG00000008352)	BBIP1 (ENSCHYG00000008317)	PDCD4 (ENSCHYG00000008245)	RBM20 (ENSCHYG00000008047)	SMC3 (ENSCHYG00000007938)	DUSP5 (ENSCHYG00000007919)	SMNDC1 (ENSCHYG00000007887)	MXI1 (ENSCHYG00000007775)	ENSCHYG00000007749	ADD3 (ENSCHYG00000007644)	ENSCHYG00000007600	XPNPEP1 (ENSCHYG00000007391)	ENSCHYG00000007351	SORCS1 (ENSCHYG00000007158)	ENSCHYG00000007117 #22	SORCS3 (ENSCHYG00000006900)	CFAP58 (ENSCHYG00000006776)	ITPRIP (ENSCHYG00000006759)	ENSCHYG00000006740	GSTO2 (ENSCHYG00000006622)	GSTO1 (ENSCHYG00000006501)	CFAP43 (ENSCHYG00000006430)	SFR1 (ENSCHYG00000006389)	COL17A1 (ENSCHYG00000005902)	SLK (ENSCHYG00000005694)	STN1 (ENSCHYG00000005613)	SH3PXD2A (ENSCHYG00000005529)	NEURL1 (ENSCHYG00000005486)	CALHM3 (ENSCHYG00000005447)	CALHM1 (ENSCHYG00000005428)
Camelidae	ANCESTRAL SPECIES	6	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Alpaca	MODERN SPECIES	417																DAP3 (ENSVPAG00000004571) #22
Arabian camel	MODERN SPECIES	13	ENSCDRG00005005373 #7	TRIM46 (ENSCDRG00005005427) #8	ENSCDRG00005005592 #9	THBS3 (ENSCDRG00005006062) #10	MTX1 (ENSCDRG00005006745)	GBA1 (ENSCDRG00005006922)	ENTREP3 (ENSCDRG00005007137) #11	SCAMP3 (ENSCDRG00005007482) #12	CLK2 (ENSCDRG00005007685) #13	HCN3 (ENSCDRG00005008096) #14	PKLR (ENSCDRG00005008136) #15	FDPS (ENSCDRG00005008269) #16	RUSC1 (ENSCDRG00005008367) #17	ASH1L (ENSCDRG00005008672) #19	ENSCDRG00005008918	DAP3 (ENSCDRG00005008986) #22	ENSCDRG00005009290 #23	ENSCDRG00005009473 #23	MSTO1 (ENSCDRG00005009513) #20	SYT11 (ENSCDRG00005009687) #24	RIT1 (ENSCDRG00005009734) #25	ENSCDRG00005009887	RXFP4 (ENSCDRG00005009989)	ARHGEF2 (ENSCDRG00005010064) #28	SSR2 (ENSCDRG00005010971) #29	UBQLN4 (ENSCDRG00005011159) #30	LAMTOR2 (ENSCDRG00005011283) #31	RAB25 (ENSCDRG00005011364) #32	MEX3A (ENSCDRG00005011401) #33	LMNA (ENSCDRG00005011469) #34	SEMA4A (ENSCDRG00005011665) #35
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000008892	ENSGT00390000003552.r.a #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d.g #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.p #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.f #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125.d #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Ursus	ANCESTRAL SPECIES	72	ENSGT00390000008892	ENSGT00390000003552.r.a #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d.g #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.p #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.f #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125.d #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31
American black bear	MODERN SPECIES	23																DAP3 (ENSUAMG00000013808) #22	ENSUAMG00000013824 #23	ENSUAMG00000013828 #23	ENSUAMG00000013830 #23	SYT11 (ENSUAMG00000013841) #24	RIT1 (ENSUAMG00000013852) #25	KHDC4 (ENSUAMG00000013863) #26	ARHGEF2 (ENSUAMG00000013991) #28	SSR2 (ENSUAMG00000015694) #29	UBQLN4 (ENSUAMG00000015695) #30	ENSUAMG00000015696 #31
Polar bear	MODERN SPECIES	200	DPM3 (ENSUMAG00000019686)	KRTCAP2 (ENSUMAG00000019679) #7	TRIM46 (ENSUMAG00000019619) #8	ENSUMAG00000019578 #9	THBS3 (ENSUMAG00000019564) #10	MTX1 (ENSUMAG00000019562)	GBA1 (ENSUMAG00000019554)	ENTREP3 (ENSUMAG00000019516) #11	SCAMP3 (ENSUMAG00000019504) #12	CLK2 (ENSUMAG00000019495) #13	HCN3 (ENSUMAG00000019475) #14	ENSUMAG00000019472 #15	FDPS (ENSUMAG00000019468) #16	ASH1L (ENSUMAG00000019455) #19	ENSUMAG00000019450 #19	DAP3 (ENSUMAG00000019443) #22	MSTO1 (ENSUMAG00000019384) #20	ENSUMAG00000018608 #23	SYT11 (ENSUMAG00000018466) #24	RIT1 (ENSUMAG00000018455) #25	KHDC4 (ENSUMAG00000018427) #26	ARHGEF2 (ENSUMAG00000018398) #28	SSR2 (ENSUMAG00000018391) #29	ENSUMAG00000018385 #30	ENSUMAG00000018379	RAB25 (ENSUMAG00000018376) #32	LMNA (ENSUMAG00000018354) #34	SEMA4A (ENSUMAG00000018344) #35	SLC25A44 (ENSUMAG00000018341) #37	ENSUMAG00000018338	BGLAP (ENSUMAG00000018334)
Giant Panda	MODERN SPECIES	18	SLC50A1 (ENSAMEG00000011338)	DPM3 (ENSAMEG00000018837)	TRIM46 (ENSAMEG00000011314) #8	ENSAMEG00000011303 #9	ENSAMEG00000000087 #10	MTX1 (ENSAMEG00000023695)	GBA1 (ENSAMEG00000000077)	ENTREP3 (ENSAMEG00000000076) #11	SCAMP3 (ENSAMEG00000024431) #12	CLK2 (ENSAMEG00000000065) #13	HCN3 (ENSAMEG00000000063) #14	PKLR (ENSAMEG00000000055) #15	FDPS (ENSAMEG00000000050) #16	ENSAMEG00000026390 #17	ASH1L (ENSAMEG00000000049) #19	DAP3 (ENSAMEG00000000047) #22	MSTO1 (ENSAMEG00000000045) #20	ENSAMEG00000000043 #23	SYT11 (ENSAMEG00000000041) #24	RIT1 (ENSAMEG00000000040) #25	KHDC4 (ENSAMEG00000000037) #26	ARHGEF2 (ENSAMEG00000000035) #28	SSR2 (ENSAMEG00000014198) #29	ENSAMEG00000028885 #31	RAB25 (ENSAMEG00000014249) #32	MEX3A (ENSAMEG00000014265) #33	LMNA (ENSAMEG00000014270) #34	SEMA4A (ENSAMEG00000014336) #35	SLC25A44 (ENSAMEG00000014397) #37	PMF1 (ENSAMEG00000014403)	BGLAP (ENSAMEG00000014417)
Mustelinae	ANCESTRAL SPECIES	23	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074.m #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
American mink	MODERN SPECIES	260	DPM3 (ENSNVIG00000018600)	KRTCAP2 (ENSNVIG00000018604) #7	TRIM46 (ENSNVIG00000018621) #8	ENSNVIG00000018761 #9	THBS3 (ENSNVIG00000019003) #10	MTX1 (ENSNVIG00000019192)	GBA1 (ENSNVIG00000019234)	ENTREP3 (ENSNVIG00000019353) #11	SCAMP3 (ENSNVIG00000019433) #12	CLK2 (ENSNVIG00000019445) #13	HCN3 (ENSNVIG00000019481) #14	PKLR (ENSNVIG00000019507) #15	FDPS (ENSNVIG00000019613) #16	ENSNVIG00000019622 ##17	ASH1L (ENSNVIG00000019642) #19	DAP3 (ENSNVIG00000019822) #22	MSTO1 (ENSNVIG00000019933) #20	ENSNVIG00000019964 #23	SYT11 (ENSNVIG00000020257) #24	RIT1 (ENSNVIG00000020272) #25	ENSNVIG00000020342 #26	ARHGEF2 (ENSNVIG00000020356) #28	SSR2 (ENSNVIG00000020385) #29	UBQLN4 (ENSNVIG00000020416) #30	LAMTOR2 (ENSNVIG00000020427) #31	RAB25 (ENSNVIG00000020433) #32	LMNA (ENSNVIG00000020473) #34	SEMA4A (ENSNVIG00000020558) #35	SLC25A44 (ENSNVIG00000020603) #37	ENSNVIG00000020609	BGLAP (ENSNVIG00000020619)
Ferret	MODERN SPECIES	441	DPM3 (ENSMPUG00000018434)	KRTCAP2 (ENSMPUG00000005647) #7	ENSMPUG00000018433	TRIM46 (ENSMPUG00000005635) #8	ENSMPUG00000005627 #9	THBS3 (ENSMPUG00000005609) #10	MTX1 (ENSMPUG00000005591)	GBA1 (ENSMPUG00000005579)	ENTREP3 (ENSMPUG00000005565) #11	CLK2 (ENSMPUG00000005543) #13	HCN3 (ENSMPUG00000005526) #14	PKLR (ENSMPUG00000005509) #15	ENSMPUG00000005496 #16	ENSMPUG00000005484 #17	ASH1L (ENSMPUG00000005465) #19	DAP3 (ENSMPUG00000005314) #22	MSTO1 (ENSMPUG00000005298) #20	ENSMPUG00000005274 #23	SYT11 (ENSMPUG00000005268) #24	RIT1 (ENSMPUG00000005245) #25	KHDC4 (ENSMPUG00000005186) #26	ARHGEF2 (ENSMPUG00000005016) #28	SSR2 (ENSMPUG00000004963) #29	UBQLN4 (ENSMPUG00000004855) #30	LAMTOR2 (ENSMPUG00000004826) #31	RAB25 (ENSMPUG00000004790) #32	MEX3A (ENSMPUG00000004774) #33	LMNA (ENSMPUG00000004761) #34	SEMA4A (ENSMPUG00000004742) #35	SLC25A44 (ENSMPUG00000004717) #37	PMF1 (ENSMPUG00000004672)
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000008892	ENSGT00390000003552.o.a #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917.f #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000008892	ENSGT00390000003552.o.a #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917.f #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Dingo	MODERN SPECIES	271	DPM3 (ENSCAFG00020007807)	ENSCAFG00020007799 #7	TRIM46 (ENSCAFG00020007601) #8	ENSCAFG00020007519 #9	THBS3 (ENSCAFG00020007372) #10	MTX1 (ENSCAFG00020007334)	GBA1 (ENSCAFG00020007184)	ENTREP3 (ENSCAFG00020007168) #11	ENSCAFG00020007113 #12	CLK2 (ENSCAFG00020007098) #13	HCN3 (ENSCAFG00020007064) #14	PKLR (ENSCAFG00020006996) #15	FDPS (ENSCAFG00020006959) #16	ENSCAFG00020006949 #17	ASH1L (ENSCAFG00020006713) #19	DAP3 (ENSCAFG00020006662) #22	MSTO1 (ENSCAFG00020006658) #20	ENSCAFG00020006650 #23	SYT11 (ENSCAFG00020006484) #24	RIT1 (ENSCAFG00020006481) #25	KHDC4 (ENSCAFG00020006317) #26	ARHGEF2 (ENSCAFG00020006291) #28	SSR2 (ENSCAFG00020006268) #29	UBQLN4 (ENSCAFG00020006198) #30	ENSCAFG00020006183 #31	RAB25 (ENSCAFG00020006179) #32	MEX3A (ENSCAFG00020006171) #33	LMNA (ENSCAFG00020006147) #34	SEMA4A (ENSCAFG00020006101) #35	SLC25A44 (ENSCAFG00020006099) #37	ENSCAFG00020006096
Dog	MODERN SPECIES	35	SLC50A1 (ENSCAFG00845013320)	KRTCAP2 (ENSCAFG00845013256) #7	TRIM46 (ENSCAFG00845013129) #8	MUC1 (ENSCAFG00845013058) #9	THBS3 (ENSCAFG00845012937) #10	MTX1 (ENSCAFG00845012843)	GBA (ENSCAFG00845012760)	ENTREP3 (ENSCAFG00845012555) #11	SCAMP3 (ENSCAFG00845012373) #12	CLK2 (ENSCAFG00845012282) #13	HCN3 (ENSCAFG00845012249) #14	PKLR (ENSCAFG00845012059) #15	FDPS (ENSCAFG00845011910) #16	RUSC1 (ENSCAFG00845011825) #17	ASH1L (ENSCAFG00845011740) #19	DAP3 (ENSCAFG00845011528) #22	MSTO1 (ENSCAFG00845011422) #20	ENSCAFG00845011319 #23	SYT11 (ENSCAFG00845011235) #24	RIT1 (ENSCAFG00845011170) #25	KHDC4 (ENSCAFG00845011090) #26	ARHGEF2 (ENSCAFG00845010726) #28	SSR2 (ENSCAFG00845010530) #29	UBQLN4 (ENSCAFG00845010456) #30	LAMTOR2 (ENSCAFG00845010372) #31	RAB25 (ENSCAFG00845010319) #32	MEX3A (ENSCAFG00845010291) #33	LMNA (ENSCAFG00845010163) #34	SEMA4A (ENSCAFG00845010023) #35	SLC25A44 (ENSCAFG00845009963) #37	BGLAP (ENSCAFG00845009909)
Red fox	MODERN SPECIES	23	EFNA1 (ENSVVUG00000002281)	SLC50A1 (ENSVVUG00000002288)	ENSVVUG00000002322 #7	TRIM46 (ENSVVUG00000002355) #8	ENSVVUG00000002375 #9	THBS3 (ENSVVUG00000002526) #10	MTX1 (ENSVVUG00000003835)	GBA1 (ENSVVUG00000003843)	FAM189B (ENSVVUG00000003865) #11	CLK2 (ENSVVUG00000003884) #13	HCN3 (ENSVVUG00000003915) #14	PKLR (ENSVVUG00000003930) #15	FDPS (ENSVVUG00000004041) #16	RUSC1 (ENSVVUG00000004055) #17	ASH1L (ENSVVUG00000004069) #19	DAP3 (ENSVVUG00000004090) #22	MSTO1 (ENSVVUG00000004113) #20	ENSVVUG00000004239 #23	SYT11 (ENSVVUG00000005667) #24	RIT1 (ENSVVUG00000005671) #25	KHDC4 (ENSVVUG00000005679) #26	ARHGEF2 (ENSVVUG00000005746) #28	SSR2 (ENSVVUG00000005756) #29	UBQLN4 (ENSVVUG00000005763) #30	LAMTOR2 (ENSVVUG00000005816) #31	RAB25 (ENSVVUG00000005821) #32	MEX3A (ENSVVUG00000005834) #33	LMNA (ENSVVUG00000005843) #34	ENSVVUG00000005853 #35	ENSVVUG00000005856 #35	SLC25A44 (ENSVVUG00000005863) #37
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000008892	ENSGT00390000003552.m #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000162656
Panthera	ANCESTRAL SPECIES	38	ENSGT00390000008892	ENSGT00390000003552.m #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230	ENSGT00410000026290
Tiger	MODERN SPECIES	274	EFNA4 (ENSPTIG00000020151)	EFNA1 (ENSPTIG00000018875)	SLC50A1 (ENSPTIG00000015785)	ENSPTIG00000004266	TRIM46 (ENSPTIG00000012094) #8	ENSPTIG00000020832 #9	ENSPTIG00000018857 #10	ENSPTIG00000018438	GBA1 (ENSPTIG00000014359)	ENSPTIG00000013508 #11	SCAMP3 (ENSPTIG00000011445) #12	CLK2 (ENSPTIG00000010873) #13	HCN3 (ENSPTIG00000009244) #14	ENSPTIG00000008406 #16	ASH1L (ENSPTIG00000019713) #19	DAP3 (ENSPTIG00000015443) #22	ENSPTIG00000013227 #23	ENSPTIG00000007985 #23	SYT11 (ENSPTIG00000007723) #24	RIT1 (ENSPTIG00000007045) #25	KHDC4 (ENSPTIG00000004498) #26	ENSPTIG00000001215 #28	SSR2 (ENSPTIG00000022102) #29	UBQLN4 (ENSPTIG00000022083) #30	LAMTOR2 (ENSPTIG00000022068) #31	RAB25 (ENSPTIG00000022049) #32	ENSPTIG00000021888 #34	SEMA4A (ENSPTIG00000016788) #35	SLC25A44 (ENSPTIG00000011099) #37	SMG5 (ENSPTIG00000007892)	TMEM79 (ENSPTIG00000007414)
Panthera_a	ANCESTRAL SPECIES	37	ENSGT00390000008892	ENSGT00390000003552.m #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230	ENSGT00410000026290
lion	MODERN SPECIES	44	DPM3 (ENSPLOG00000010436)	KRTCAP2 (ENSPLOG00000010408) #7	TRIM46 (ENSPLOG00000010284) #8	ENSPLOG00000009848 #9	THBS3 (ENSPLOG00000009733) #10	MTX1 (ENSPLOG00000009676)	GBA1 (ENSPLOG00000009584)	ENTREP3 (ENSPLOG00000009450) #11	SCAMP3 (ENSPLOG00000009300) #12	CLK2 (ENSPLOG00000008926) #13	HCN3 (ENSPLOG00000008852) #14	PKLR (ENSPLOG00000008753) #15	FDPS (ENSPLOG00000008651) #16	RUSC1 (ENSPLOG00000008579) #17	ASH1L (ENSPLOG00000008458) #19	ENSPLOG00000008379 #22	ENSPLOG00000008203 #23	SYT11 (ENSPLOG00000008151) #24	RIT1 (ENSPLOG00000008053) #25	KHDC4 (ENSPLOG00000007865) #26	ARHGEF2 (ENSPLOG00000007611) #28	SSR2 (ENSPLOG00000007527) #29	UBQLN4 (ENSPLOG00000007496) #30	LAMTOR2 (ENSPLOG00000007417) #31	RAB25 (ENSPLOG00000007385) #32	MEX3A (ENSPLOG00000007367) #33	LMNA (ENSPLOG00000007050) #34	SEMA4A (ENSPLOG00000006968) #35	SLC25A44 (ENSPLOG00000006937) #37	ENSPLOG00000006903	BGLAP (ENSPLOG00000006890)
leopard	MODERN SPECIES	138	ENSPPRG00000016068 #7	TRIM46 (ENSPPRG00000015318) #8	ENSPPRG00000010404 #9	THBS3 (ENSPPRG00000008080) #10	MTX1 (ENSPPRG00000005477)	GBA1 (ENSPPRG00000005171)	ENTREP3 (ENSPPRG00000001368) #11	SCAMP3 (ENSPPRG00000023077) #12	CLK2 (ENSPPRG00000023511) #13	HCN3 (ENSPPRG00000021359) #14	PKLR (ENSPPRG00000019731) #15	FDPS (ENSPPRG00000017484) #16	ENSPPRG00000015592 #17	ASH1L (ENSPPRG00000014648) #19	ENSPPRG00000011971	DAP3 (ENSPPRG00000011800) #22	ENSPPRG00000008799 #23	SYT11 (ENSPPRG00000000652) #24	RIT1 (ENSPPRG00000000399) #25	KHDC4 (ENSPPRG00000021149) #26	ARHGEF2 (ENSPPRG00000018064) #28	SSR2 (ENSPPRG00000009542) #29	UBQLN4 (ENSPPRG00000008090) #30	LAMTOR2 (ENSPPRG00000007518) #31	RAB25 (ENSPPRG00000006611) #32	MEX3A (ENSPPRG00000006585) #33	LMNA (ENSPPRG00000003442) #34	SEMA4A (ENSPPRG00000024539) #35	ENSPPRG00000017448 #37	ENSPPRG00000016604 #37	ENSPPRG00000015181
Cat	MODERN SPECIES	248	TRIM46 (ENSFCAG00000027878) #8	ENSFCAG00000049489	ENSFCAG00000052389	THBS3 (ENSFCAG00000006584) #10	GBA1 (ENSFCAG00000000900)	MTX1 (ENSFCAG00000018630)	ENTREP3 (ENSFCAG00000032467) #11	SCAMP3 (ENSFCAG00000000903) #12	CLK2 (ENSFCAG00000045726) #13	HCN3 (ENSFCAG00000029067) #14	PKLR (ENSFCAG00000035883) #15	ENSFCAG00000047278	FDPS (ENSFCAG00000039350) #16	RUSC1 (ENSFCAG00000024900) #17	ASH1L (ENSFCAG00000012088) #19	DAP3 (ENSFCAG00000022787) #22	MSTO1 (ENSFCAG00000030966) #20	ENSFCAG00000012133 #23	SYT11 (ENSFCAG00000029675) #24	ENSFCAG00000037260 #25	RIT1 (ENSFCAG00000044860) #25	KHDC4 (ENSFCAG00000012137) #26	ARHGEF2 (ENSFCAG00000030294) #28	SSR2 (ENSFCAG00000043703) #29	ENSFCAG00000050566	UBQLN4 (ENSFCAG00000011772) #30	LAMTOR2 (ENSFCAG00000028596) #31	RAB25 (ENSFCAG00000011775) #32	MEX3A (ENSFCAG00000044236) #33	LMNA (ENSFCAG00000011776) #34	SEMA4A (ENSFCAG00000011779) #35
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Equus	ANCESTRAL SPECIES	3	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37	ENSGT00940000164230
Horse	MODERN SPECIES	26	KRTCAP2 (ENSECAG00000019530) #7	TRIM46 (ENSECAG00000009084) #8	MUC1 (ENSECAG00000006646) #9	THBS3 (ENSECAG00000011993) #10	MTX1 (ENSECAG00000007495)	GBA1 (ENSECAG00000022786)	ENTREP3 (ENSECAG00000019857) #11	CLK2 (ENSECAG00000021471) #12	CLK2 (ENSECAG00000049239) #13	HCN3 (ENSECAG00000019972) #14	PKLR (ENSECAG00000013836) #15	FDPS (ENSECAG00000039158) #16	RUSC1 (ENSECAG00000023262) #17	ASH1L (ENSECAG00000018527) #19	ENSECAG00000049880	DAP3 (ENSECAG00000016401) #22	MSTO1 (ENSECAG00000008798) #20	SYT11 (ENSECAG00000019725) #24	ENSECAG00000019775 #23	RIT1 (ENSECAG00000015714) #25	KHDC4 (ENSECAG00000011569) #26	ARHGEF2 (ENSECAG00000013759) #28	SSR2 (ENSECAG00000013740) #29	UBQLN4 (ENSECAG00000009993) #30	LAMTOR2 (ENSECAG00000009193) #31	RAB25 (ENSECAG00000023191) #32	MEX3A (ENSECAG00000007279) #33	LMNA (ENSECAG00000011097) #34	SEMA4A (ENSECAG00000008622) #35	SLC25A44 (ENSECAG00000007577) #37	ENSECAG00000005938
Donkey	MODERN SPECIES	17	MTX1 (ENSEASG00005019421)	GBA1 (ENSEASG00005019288)	ENTREP3 (ENSEASG00005019271) #11	SCAMP3 (ENSEASG00005028927) #12	CLK2 (ENSEASG00005019265) #13	HCN3 (ENSEASG00005019261) #14	ENSEASG00005019252 #15	ENSEASG00005037616	ENSEASG00005019243 #17	ENSEASG00005019246 #16	ENSEASG00005030134	ENSEASG00005010486	ENSEASG00005010484	ENSEASG00005019185 #19	ENSEASG00005024932	DAP3 (ENSEASG00005019165) #22	ENSEASG00005019163 #20	ENSEASG00005019154 #23	SYT11 (ENSEASG00005019151) #24	RIT1 (ENSEASG00005019149) #25	KHDC4 (ENSEASG00005019143) #26	ARHGEF2 (ENSEASG00005019138) #28	SSR2 (ENSEASG00005019136) #29	UBQLN4 (ENSEASG00005019135) #30	LAMTOR2 (ENSEASG00005031172) #31	RAB25 (ENSEASG00005019133) #32	MEX3A (ENSEASG00005031469) #33	LMNA (ENSEASG00005019130) #34	SEMA4A (ENSEASG00005019129) #35	SLC25A44 (ENSEASG00005019128) #37	ENSEASG00005019127
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Greater horseshoe bat	MODERN SPECIES	14	ENSRFEG00010010628	KRTCAP2 (ENSRFEG00010010666) #7	TRIM46 (ENSRFEG00010010789) #8	ENSRFEG00010011087 #9	THBS3 (ENSRFEG00010011140) #10	MTX1 (ENSRFEG00010011328)	GBA1 (ENSRFEG00010011405)	ENTREP3 (ENSRFEG00010011523) #11	SCAMP3 (ENSRFEG00010012014) #12	CLK2 (ENSRFEG00010012197) #13	HCN3 (ENSRFEG00010012686) #14	PKLR (ENSRFEG00010012731) #15	FDPS (ENSRFEG00010012958) #16	RUSC1 (ENSRFEG00010013073) #17	ASH1L (ENSRFEG00010013223) #19	DAP3 (ENSRFEG00010013351) #22	MSTO1 (ENSRFEG00010013673) #20	ENSRFEG00010013759 #23	SYT11 (ENSRFEG00010014057) #24	RIT1 (ENSRFEG00010014140) #25	KHDC4 (ENSRFEG00010014273) #26	RXFP4 (ENSRFEG00010014369)	ARHGEF2 (ENSRFEG00010014408) #28	SSR2 (ENSRFEG00010014692) #29	UBQLN4 (ENSRFEG00010014900) #30	ENSRFEG00010014949 #31	RAB25 (ENSRFEG00010015038) #32	MEX3A (ENSRFEG00010015157) #33	LMNA (ENSRFEG00010015236) #34	SEMA4A (ENSRFEG00010015377) #35	SLC25A44 (ENSRFEG00010015502) #37
Microbat	MODERN SPECIES	1148	SLC50A1 (ENSMLUG00000004222)	DPM3 (ENSMLUG00000004229)	KRTCAP2 (ENSMLUG00000004230) #7	TRIM46 (ENSMLUG00000004236) #8	ENSMLUG00000004244 #9	THBS3 (ENSMLUG00000004252) #10	MTX1 (ENSMLUG00000013377)	GBA1 (ENSMLUG00000013382)	ENTREP3 (ENSMLUG00000013396) #11	SCAMP3 (ENSMLUG00000013402) #12	CLK2 (ENSMLUG00000013410) #13	HCN3 (ENSMLUG00000013418) #14	PKLR (ENSMLUG00000013422) #15	RUSC1 (ENSMLUG00000013446) #17	ASH1L (ENSMLUG00000013461) #19	DAP3 (ENSMLUG00000005848) #22	MSTO1 (ENSMLUG00000009855) #20	ENSMLUG00000009868 #23	SYT11 (ENSMLUG00000009918) #24	RIT1 (ENSMLUG00000009935) #25	KHDC4 (ENSMLUG00000009967) #26	RXFP4 (ENSMLUG00000010023)	ARHGEF2 (ENSMLUG00000010039) #28	SSR2 (ENSMLUG00000010102) #29	UBQLN4 (ENSMLUG00000010131) #30	ENSMLUG00000023871 #31	RAB25 (ENSMLUG00000010153) #32	MEX3A (ENSMLUG00000010185) #33	LMNA (ENSMLUG00000026412) #34	SEMA4A (ENSMLUG00000000639) #35	SLC25A44 (ENSMLUG00000008481) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000015248 #22
Common shrew	MODERN SPECIES	2185																DAP3 (ENSSARG00000012468) #22
Hedgehog	MODERN SPECIES	2942																DAP3 (ENSEEUG00000003537) #22
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Xenarthra	ANCESTRAL SPECIES	116	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22
Sloth	DUPLICATION
Sloth	MODERN SPECIES	8411																ENSCHOG00000012345 #22
Sloth	MODERN SPECIES	2539																ENSCHOG00000012200 #22
Armadillo	MODERN SPECIES	4499	DPM3 (ENSDNOG00000046629)	KRTCAP2 (ENSDNOG00000006735) #7	TRIM46 (ENSDNOG00000006744) #8	ENSDNOG00000046860 #9	THBS3 (ENSDNOG00000013936) #10	MTX1 (ENSDNOG00000047055)	GBA1 (ENSDNOG00000035198)	ENTREP3 (ENSDNOG00000046977) #11	SCAMP3 (ENSDNOG00000038444) #12	CLK2 (ENSDNOG00000045069) #13	HCN3 (ENSDNOG00000038957) #14	PKLR (ENSDNOG00000046661) #15	FDPS (ENSDNOG00000041417) #16	RUSC1 (ENSDNOG00000009870) #17	ASH1L (ENSDNOG00000034752) #19	DAP3 (ENSDNOG00000004559) #22
Afrotheria	ANCESTRAL SPECIES	36	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Afrotheria_a	ANCESTRAL SPECIES	37	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Hyrax	MODERN SPECIES	8561																DAP3 (ENSPCAG00000007635) #22
Elephant	MODERN SPECIES	325	SLC50A1 (ENSLAFG00000000225)	DPM3 (ENSLAFG00000023095)	KRTCAP2 (ENSLAFG00000000227) #7	TRIM46 (ENSLAFG00000000229) #8	ENSLAFG00000029144 #9	THBS3 (ENSLAFG00000005872) #10	MTX1 (ENSLAFG00000005875)	GBA1 (ENSLAFG00000000230)	ENTREP3 (ENSLAFG00000021530) #11	SCAMP3 (ENSLAFG00000021677) #12	CLK2 (ENSLAFG00000022844) #13	HCN3 (ENSLAFG00000003265) #14	PKLR (ENSLAFG00000003270) #15	RUSC1 (ENSLAFG00000029910) #17	ASH1L (ENSLAFG00000002197) #19	DAP3 (ENSLAFG00000005200) #22	MSTO1 (ENSLAFG00000006224) #20	ENSLAFG00000005205 #23	SYT11 (ENSLAFG00000030067) #24	RIT1 (ENSLAFG00000014967) #25	KHDC4 (ENSLAFG00000014971) #26	RXFP4 (ENSLAFG00000011205)	ARHGEF2 (ENSLAFG00000011210) #28	SLC25A44 (ENSLAFG00000022753) #37	SSR2 (ENSLAFG00000011219) #29	UBQLN4 (ENSLAFG00000011221) #30	LAMTOR2 (ENSLAFG00000029041) #31	RAB25 (ENSLAFG00000009222) #32	MEX3A (ENSLAFG00000009220) #33	LMNA (ENSLAFG00000002832) #34	SEMA4A (ENSLAFG00000002834) #35
Tenrec	MODERN SPECIES	6041																DAP3 (ENSETEG00000015833) #22	ENSETEG00000015838	ENSETEG00000015841 #23
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000016256.b #23	ENSGT00530000064067 #20	ENSGT00390000016256.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000016256.b #23	ENSGT00530000064067 #20	ENSGT00390000016256.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Diprotodontia	ANCESTRAL SPECIES	30	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917.g #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000016256.b #23	ENSGT00530000064067 #20	ENSGT00390000016256.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Diprotodontia_a	ANCESTRAL SPECIES	28	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000167855	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917.g #12	ENSGT00940000154947 #13	ENSGT00940000162023 #14	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000016256.b #23	ENSGT00530000064067 #20	ENSGT00390000016256.a #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00940000158341 #28	ENSGT00390000005125 #29	ENSGT00940000155620 #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000161732 #33	ENSGT00940000157244 #34	ENSGT00940000161509 #35	ENSGT00940000155399 #37
Common wonbat	MODERN SPECIES	1035	ENSVURG00010015519	ENSVURG00010015511	KRTCAP2 (ENSVURG00010015503) #7	ENSVURG00010015479 #8	THBS3 (ENSVURG00010015418) #10	MTX1 (ENSVURG00010015402)	GBA1 (ENSVURG00010015296)	ENSVURG00010015259 #11	ENSVURG00010015236 #12	ENSVURG00010015162 #13	ENSVURG00010015123 #14	ENSVURG00010015094 #15	FDPS (ENSVURG00010015053) #16	RUSC1 (ENSVURG00010015034) #17	ASH1L (ENSVURG00010014983) #19	ENSVURG00010014964 #22	ENSVURG00010014951 #23	ENSVURG00010014937	MSTO1 (ENSVURG00010014920) #20	ENSVURG00010014888 #23	SYT11 (ENSVURG00010014876) #24	RIT1 (ENSVURG00010014864) #25	KHDC4 (ENSVURG00010014857) #26	ENSVURG00010014832	ARHGEF2 (ENSVURG00010014790) #28	SSR2 (ENSVURG00010014748) #29	UBQLN4 (ENSVURG00010014662) #30	LAMTOR2 (ENSVURG00010014640) #31	RAB25 (ENSVURG00010014628) #32	MEX3A (ENSVURG00010014622) #33	LMNA (ENSVURG00010014586) #34
koala	MODERN SPECIES	42	ENSPCIG00000012840	KRTCAP2 (ENSPCIG00000012846) #7	TRIM46 (ENSPCIG00000012848) #8	ENSPCIG00000032307	THBS3 (ENSPCIG00000021726) #10	MTX1 (ENSPCIG00000021725)	GBA1 (ENSPCIG00000021724)	ENTREP3 (ENSPCIG00000021723) #11	ENSPCIG00000021702 #12	CLK2 (ENSPCIG00000021701) #13	HCN3 (ENSPCIG00000021700) #14	PKLR (ENSPCIG00000021699) #15	FDPS (ENSPCIG00000021697) #16	RUSC1 (ENSPCIG00000021696) #17	ASH1L (ENSPCIG00000021694) #19	DAP3 (ENSPCIG00000021692) #22	ENSPCIG00000021691 #23	ENSPCIG00000035411	MSTO1 (ENSPCIG00000021688) #20	ENSPCIG00000019134 #23	ENSPCIG00000031923 #23	SYT11 (ENSPCIG00000036428) #24	RIT1 (ENSPCIG00000019094) #25	KHDC4 (ENSPCIG00000019084) #26	ARHGEF2 (ENSPCIG00000019069) #28	SSR2 (ENSPCIG00000019065) #29	UBQLN4 (ENSPCIG00000018959) #30	LAMTOR2 (ENSPCIG00000018952) #31	RAB25 (ENSPCIG00000018951) #32	MEX3A (ENSPCIG00000018950) #33	LMNA (ENSPCIG00000018949) #34
Wallaby	MODERN SPECIES	3827																DAP3 (ENSMEUG00000015501) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000023275	ENSSHAG00000007401 #7	TRIM46 (ENSSHAG00000007463) #8	ENSSHAG00000007581 #9	THBS3 (ENSSHAG00000007756) #10	MTX1 (ENSSHAG00000007908)	GBA1 (ENSSHAG00000007951)	ENTREP3 (ENSSHAG00000024415) #11	SCAMP3 (ENSSHAG00000031192) #12	CLK2 (ENSSHAG00000008336) #13	HCN3 (ENSSHAG00000008495) #14	PKLR (ENSSHAG00000008590) #15	FDPS (ENSSHAG00000009077) #16	RUSC1 (ENSSHAG00000026915) #17	ASH1L (ENSSHAG00000009472) #19	ENSSHAG00000028324 #22	ENSSHAG00000011327 #23	ENSSHAG00000030016	ENSSHAG00000011742 #20	ENSSHAG00000011779 #23	ENSSHAG00000012239 #24	RIT1 (ENSSHAG00000012524) #25	KHDC4 (ENSSHAG00000012665) #26	ARHGEF2 (ENSSHAG00000020979) #28	ENSSHAG00000012964 #29	UBQLN4 (ENSSHAG00000013254) #30	LAMTOR2 (ENSSHAG00000013314) #31	RAB25 (ENSSHAG00000013327) #32	MEX3A (ENSSHAG00000032241) #33	LMNA (ENSSHAG00000013712) #34	SEMA4A (ENSSHAG00000013803) #35
Opossum	MODERN SPECIES	1	KRTCAP2 (ENSMODG00000017103) #7	TRIM46 (ENSMODG00000017100) #8	ENSMODG00000017095 #9	THBS3 (ENSMODG00000017093) #10	MTX1 (ENSMODG00000017089)	GBA1 (ENSMODG00000017085)	ENTREP3 (ENSMODG00000017077) #11	SCAMP3 (ENSMODG00000017073) #12	ENSMODG00000017066 #13	ENSMODG00000047191 #13	HCN3 (ENSMODG00000017060) #14	PKLR (ENSMODG00000017053) #15	ENSMODG00000042246 #16	RUSC1 (ENSMODG00000017044) #17	ASH1L (ENSMODG00000017033) #19	DAP3 (ENSMODG00000017024) #22	ENSMODG00000025668 #23	MSTO1 (ENSMODG00000017015) #20	ENSMODG00000017006 #23	SYT11 (ENSMODG00000016994) #24	RIT1 (ENSMODG00000016989) #25	KHDC4 (ENSMODG00000016981) #26	ARHGEF2 (ENSMODG00000016970) #28	SSR2 (ENSMODG00000016964) #29	UBQLN4 (ENSMODG00000016961) #30	LAMTOR2 (ENSMODG00000016959) #31	RAB25 (ENSMODG00000048622) #32	MEX3A (ENSMODG00000016954) #33	LMNA (ENSMODG00000016946) #34	SEMA4A (ENSMODG00000016928) #35	SLC25A44 (ENSMODG00000016921) #37
Platypus	MODERN SPECIES	88	ENSOANG00000044148	ENSOANG00000011394	ZBTB7B (ENSOANG00000049201)	ENSOANG00000037026	CKS1B (ENSOANG00000013070)	SHC1 (ENSOANG00000046522)	PYGO2 (ENSOANG00000038886)	ENSOANG00000050057	ENSOANG00000038919	ENTREP3 (ENSOANG00000038845) #11	SCAMP3 (ENSOANG00000037835) #12	CLK2 (ENSOANG00000049819) #13	PKLR (ENSOANG00000044012) #15	FDPS (ENSOANG00000051014) #16	ENSOANG00000043091 #17	DAP3 (ENSOANG00000031925) #22	ENSOANG00000042137	ENSOANG00000049330 #23	SYT11 (ENSOANG00000042253) #24	KHDC4 (ENSOANG00000031515) #26	ARHGEF2 (ENSOANG00000047409) #28	SSR2 (ENSOANG00000041072) #29	UBQLN4 (ENSOANG00000040199) #30	ENSOANG00000039502 #31	RAB25 (ENSOANG00000036213) #32	MEX3A (ENSOANG00000039670) #33	ENSOANG00000048604	ENSOANG00000041083	LMNA (ENSOANG00000012813) #34	SEMA4A (ENSOANG00000009659) #35	SLC25A44 (ENSOANG00000043363) #37
Sauria	ANCESTRAL SPECIES	28	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00940000164105	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Lepidosauria	ANCESTRAL SPECIES	42	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00940000164105	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Episquamata	ANCESTRAL SPECIES	17	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000003894	ENSGT00390000009529	ENSGT00390000004029	ENSGT00950000183209.a	ENSGT00940000161973	ENSGT00940000155078.a.b.b	ENSGT00940000160966	ENSGT00940000164842	ENSGT00940000158549	ENSGT00390000008744
Laterata	ANCESTRAL SPECIES	25	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000003894	ENSGT00390000009529	ENSGT00390000004029	ENSGT00950000183209.a	ENSGT00940000161973	ENSGT00940000155078.a.b.b.u	ENSGT00950000182834.A.a.b.d	ENSGT00390000009423.a	ENSGT00390000013762.a	ENSGT00940000160966
Common wall lizard	MODERN SPECIES	7	KRTCAP2 (ENSPMRG00000016066) #7	TRIM46 (ENSPMRG00000016070) #8	ENSPMRG00000016083 #9	THBS3 (ENSPMRG00000016198) #10	ENSPMRG00000016793	ENSPMRG00000016807	ENSPMRG00000016816	ENTREP3 (ENSPMRG00000016819) #11	SCAMP3 (ENSPMRG00000016827) #12	CLK2 (ENSPMRG00000016834) #13	ENSPMRG00000016843	PKLR (ENSPMRG00000016849) #15	FDPS (ENSPMRG00000016856) #16	ENSPMRG00000016863 #17	ENSPMRG00000016867 ##17	DAP3 (ENSPMRG00000017049) #22	MSTO1 (ENSPMRG00000017055) #20	ENSPMRG00000017076 #23	SYT11 (ENSPMRG00000017103) #24	RIT1 (ENSPMRG00000017107) #25	KHDC4 (ENSPMRG00000017118) #26	ENSPMRG00000017159	NDUFS2 (ENSPMRG00000017161)	UQCRQ (ENSPMRG00000017167)	PACS1 (ENSPMRG00000017249)	KLC2 (ENSPMRG00000017704)	RAB1B (ENSPMRG00000017791)	CNIH2 (ENSPMRG00000017808)	YIF1A (ENSPMRG00000017822)	TMEM151A (ENSPMRG00000017829)	ENSPMRG00000017836
Argentine black and white tegu	MODERN SPECIES	78	UQCRQ (ENSSMRG00000011238)	NDUFS2 (ENSSMRG00000011239)	ENSSMRG00000011241	KHDC4 (ENSSMRG00000011245) #26	ENSSMRG00000011253	ENSSMRG00000011391	ENTREP3 (ENSSMRG00000011401) #11	SCAMP3 (ENSSMRG00000011403) #12	CLK2 (ENSSMRG00000011409) #13	ENSSMRG00000011410	PKLR (ENSSMRG00000011432) #15	ENSSMRG00000011450	FDPS (ENSSMRG00000011451) #16	RUSC1 (ENSSMRG00000011453) #17	ASH1L (ENSSMRG00000011461) #19	DAP3 (ENSSMRG00000011851) #22	MSTO1 (ENSSMRG00000011852) #20	ENSSMRG00000011853 #23	SYT11 (ENSSMRG00000011854) #24	RIT1 (ENSSMRG00000011855) #25	ENSSMRG00000011856	MTX1 (ENSSMRG00000011857)	THBS3 (ENSSMRG00000011858) #10	TRIM46 (ENSSMRG00000011864) #8	ENSSMRG00000011866 #7	DPM3 (ENSSMRG00000011867)	SLC50A1 (ENSSMRG00000011868)	EFNA1 (ENSSMRG00000011870)	EFNA3 (ENSSMRG00000011871)	EFNA4 (ENSSMRG00000011883)	ADAM15 (ENSSMRG00000011884)
Toxicofera	ANCESTRAL SPECIES	35	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.db #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000003894	ENSGT00390000009529	ENSGT00390000004029	ENSGT00950000183209.a	ENSGT00940000161973	ENSGT00940000155078.a.b.b	ENSGT00960000189653	ENSGT00950000182834.A.a.b.d	ENSGT00940000160966	ENSGT00940000164842
Elapidae	ANCESTRAL SPECIES	29	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.db #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000003894	ENSGT00390000009529	ENSGT00390000004029	ENSGT00950000183209.a	ENSGT00940000161973	ENSGT00940000155078.a.b.b	ENSGT00960000189653	ENSGT00940000160966	ENSGT00940000164842	ENSGT00940000158549
Elapidae_a	ANCESTRAL SPECIES	83									ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.db #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256.z #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000003894	ENSGT00390000009529	ENSGT00390000004029	ENSGT00950000183209.a	ENSGT00940000161973	ENSGT00940000155078.a.b.b	ENSGT00940000160966	ENSGT00940000158549	ENSGT00390000008744	ENSGT00940000155545.a
Acanthophiinae	ANCESTRAL SPECIES	107	ENSGT00940000160219	ENSGT00940000153269.a.b	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00960000192064	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.db #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	636															ENSPTXG00000015323 #19	ENSPTXG00000015305 #22
Eastern brown snake	MODERN SPECIES	635															ENSPTXG00000015302 #19	ENSPTXG00000015300 #22
Mainland tiger snake	MODERN SPECIES	545									SCAMP3 (ENSNSUG00000015864) #12	CLK2 (ENSNSUG00000015863) #13	ENSNSUG00000015862	ENSNSUG00000015861	FDPS (ENSNSUG00000015860) #16	ENSNSUG00000015859 #17	ENSNSUG00000015858 #19	DAP3 (ENSNSUG00000015857) #22
Blue-lipped sea krait	MODERN SPECIES	6830															ASH1L (ENSLLTG00000017853) #19	DAP3 (ENSLLTG00000017856) #22	MSTO1 (ENSLLTG00000010173) #20	ENSLLTG00000010191 #23	SYT11 (ENSLLTG00000010242) #24	RIT1 (ENSLLTG00000010261) #25	KHDC4 (ENSLLTG00000010298) #26
Indian cobra	MODERN SPECIES	17	ENSNNAG00000011946	ILF2 (ENSNNAG00000011800)	SNAPIN (ENSNNAG00000011776)	CHTOP (ENSNNAG00000011750)	S100A1 (ENSNNAG00000011743)	S100A13 (ENSNNAG00000011736)	ENSNNAG00000011722	S100A16 (ENSNNAG00000011702)	ENSNNAG00000011656	THBS3 (ENSNNAG00000006497) #10	ENSNNAG00000006235	ENSNNAG00000005973	ENSNNAG00000005882	ENSNNAG00000005856 #11	ENSNNAG00000005846 #19	DAP3 (ENSNNAG00000005783) #22	MSTO1 (ENSNNAG00000005735) #20	ENSNNAG00000005716	SYT11 (ENSNNAG00000005703) #24	RIT1 (ENSNNAG00000005687) #25	KHDC4 (ENSNNAG00000005645) #26	ENSNNAG00000005630	NDUFS2 (ENSNNAG00000005539)	ENSNNAG00000005507	ENSNNAG00000005495	KLC2 (ENSNNAG00000005462)	RAB1B (ENSNNAG00000005436)	ENSNNAG00000005427	YIF1A (ENSNNAG00000005407)	ADAMTS4 (ENSNNAG00000005390)	ENSNNAG00000005347
Lizard	MODERN SPECIES	1131			ENSACAG00000003865	CNIH2 (ENSACAG00000038312)	ENSACAG00000023149	RAB1B (ENSACAG00000009125)	KLC2 (ENSACAG00000003773)	PACS1 (ENSACAG00000003679)	ENSACAG00000003677	ENSACAG00000003534	FDPS (ENSACAG00000003450) #16	ENSACAG00000040788	ENSACAG00000038968 #17	ENSACAG00000038056 #17	ASH1L (ENSACAG00000003417) #19	DAP3 (ENSACAG00000003347) #22	MSTO1 (ENSACAG00000003252) #20	ENSACAG00000003005	SYT11 (ENSACAG00000002920) #24	RIT1 (ENSACAG00000021104) #25	KHDC4 (ENSACAG00000002820) #26	SCAMP3 (ENSACAG00000034748) #12	ENSACAG00000040989	ENSACAG00000002517 #13
tuatara	MODERN SPECIES	101				MTX1 (ENSSPUG00000016243)	ENSSPUG00000016177	ENSSPUG00000016151	ENSSPUG00000016107	SCAMP3 (ENSSPUG00000016065) #12	CLK2 (ENSSPUG00000016053) #13	ENSSPUG00000016032	PKLR (ENSSPUG00000016013) #15	FDPS (ENSSPUG00000015997) #16	ENSSPUG00000015993	ENSSPUG00000015986 #17	ENSSPUG00000015901 #19	DAP3 (ENSSPUG00000015891) #22	MSTO1 (ENSSPUG00000015881) #20	ENSSPUG00000015864	ENSSPUG00000015858 #23	SYT11 (ENSSPUG00000015854) #24	RIT1 (ENSSPUG00000015844) #25	KHDC4 (ENSSPUG00000015822) #26
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Archosauria	ANCESTRAL SPECIES	28	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000005125 #29	ENSGT00570000079224	ENSGT00390000005131	ENSGT00390000002390.b	ENSGT00940000154566	ENSGT00940000160567	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399 #37	ENSGT00940000161509 #35
Aves	ANCESTRAL SPECIES	31	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000005125 #29	ENSGT00570000079224	ENSGT00390000005131	ENSGT00390000002390.b	ENSGT00940000154566	ENSGT00940000160567	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399 #37	ENSGT00940000161509 #35
Neognathae	ANCESTRAL SPECIES	28	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000164936
Galloanserae	ANCESTRAL SPECIES	31	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893
Phasianidae	ANCESTRAL SPECIES	32	ENSGT00530000063948.a	ENSGT00950000182870.a.a.b	ENSGT00950000182971.B.b	ENSGT00390000007266	ENSGT00940000160219	ENSGT00940000153269.a.a	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.`b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000014874	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT00530000063948.a	ENSGT00950000182870.a.a.b	ENSGT00950000182971.B.b	ENSGT00390000007266	ENSGT00940000160219	ENSGT00940000153269.a.a	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b.`b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000014874	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610
Turkey	MODERN SPECIES	19	ARNT (ENSMGAG00000000943)	CTSK (ENSMGAG00000016914)	CTSS (ENSMGAG00000000937)	ENSMGAG00000000928 #29	ENSMGAG00000020744	ENSMGAG00000022369	ENSMGAG00000018685	TAGLN2 (ENSMGAG00000018941)	ENSMGAG00000002287	ENSMGAG00000021173	ENSMGAG00000007340	ENSMGAG00000019882 #17	ENSMGAG00000013116 #17	ENSMGAG00000000905 #19	ENSMGAG00000018283 #12	DAP3 (ENSMGAG00000000884) #22	ENSMGAG00000000870 #20	ENSMGAG00000000803 #23	SYT11 (ENSMGAG00000000792) #24	RIT1 (ENSMGAG00000000780) #25	KHDC4 (ENSMGAG00000000764) #26	ENSMGAG00000000758	HORMAD1 (ENSMGAG00000000746)	GOLPH3L (ENSMGAG00000000741)	ENSA (ENSMGAG00000000738)	MCL1 (ENSMGAG00000000736)	ECM1 (ENSMGAG00000020763)	RPRD2 (ENSMGAG00000000731)	PRPF3 (ENSMGAG00000000707)	ENSMGAG00000000705	ENSMGAG00000000676
Chicken	MODERN SPECIES	17	CKS1B (ENSGALG00010027926)	FLAD1 (ENSGALG00010027928)	ENSGALG00010027933	ZBTB7B (ENSGALG00010027940)	KHDC4 (ENSGALG00010027942) #26	DCST2 (ENSGALG00010027945)	ENSGALG00010027949	ENSGALG00010027955	ENTREP3 (ENSGALG00010027957) #11	SCAMP3 (ENSGALG00010027962) #12	CLK2 (ENSGALG00010027966) #13	ENSGALG00010027971	FDPS (ENSGALG00010028374) #16	RUSC1 (ENSGALG00010028380) #17	ASH1L (ENSGALG00010028392) #19	DAP3 (ENSGALG00010028425) #22	MSTO1 (ENSGALG00010028433) #20	ENSGALG00010028437 #23	SYT11 (ENSGALG00010028445) #24	RIT1 (ENSGALG00010028448) #25	EFCAB12 (ENSGALG00010028449)	HORMAD1 (ENSGALG00010028866)	GOLPH3L (ENSGALG00010028452)	ENSA (ENSGALG00010028455)	MCL1 (ENSGALG00010028459)	ENSGALG00010028461	ENSGALG00010028464	RPRD2 (ENSGALG00010028472)	PRPF3 (ENSGALG00010028606)	MRPS21 (ENSGALG00010028609)	ENSGALG00010028611
Japanese quail	MODERN SPECIES	17	IL6R (ENSCJPG00005014205)	ATP8B2 (ENSCJPG00005014206)	UBAP2L (ENSCJPG00005014213)	C1orf43 (ENSCJPG00005014214)	TPM3 (ENSCJPG00005014215)	NUP210L (ENSCJPG00005014216)	ENSCJPG00005014217	JTB (ENSCJPG00005014218)	ENSCJPG00005014219	ENSCJPG00005014220 #12	CLK2 (ENSCJPG00005014221) #13	ENSCJPG00005014222	ENSCJPG00005014231 #16	ENSCJPG00005014235 #17	ASH1L (ENSCJPG00005014237) #19	DAP3 (ENSCJPG00005014238) #22	MSTO1 (ENSCJPG00005014239) #20	ENSCJPG00005014240 #23	SYT11 (ENSCJPG00005015080) #24	RIT1 (ENSCJPG00005015081) #25	KHDC4 (ENSCJPG00005015082) #26	ENSCJPG00005015085	HORMAD1 (ENSCJPG00005015086)	GOLPH3L (ENSCJPG00005015087)	ENSA (ENSCJPG00005015088)	MCL1 (ENSCJPG00005015089)	ENSCJPG00005015090	ENSCJPG00005015091	RPRD2 (ENSCJPG00005015092)	PRPF3 (ENSCJPG00005015093)	ENSCJPG00005015156
Anatidae	ANCESTRAL SPECIES	79	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d.a #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Pink-footed goose	MODERN SPECIES	387	KRTCAP2 (ENSABRG00000020457) #7	TRIM46 (ENSABRG00000020455) #8	ENSABRG00000020454	THBS3 (ENSABRG00000020451) #10	MTX1 (ENSABRG00000020448)	ENSABRG00000020431	ENSABRG00000020393	ENSABRG00000020382	ENTREP3 (ENSABRG00000020375) #11	SCAMP3 (ENSABRG00000020371) #12	CLK2 (ENSABRG00000020368) #13	ENSABRG00000020352	FDPS (ENSABRG00000020286) #16	RUSC1 (ENSABRG00000020268) #17	ASH1L (ENSABRG00000020263) #19	DAP3 (ENSABRG00000020162) #22	MSTO1 (ENSABRG00000020143) #20	ENSABRG00000020120 #23	SYT11 (ENSABRG00000020104) #24	RIT1 (ENSABRG00000020097) #25	KHDC4 (ENSABRG00000019999) #26
Neognathae_b	ANCESTRAL SPECIES	33	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b
Passeriformes	ANCESTRAL SPECIES	37	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b
Great tit	MODERN SPECIES	17	SLC50A1 (ENSPMJG00000009802)	ENSPMJG00000009800 #7	TRIM46 (ENSPMJG00000009797) #8	ENSPMJG00000009794	THBS3 (ENSPMJG00000009791) #10	MTX1 (ENSPMJG00000009788)	ENSPMJG00000009787	ENSPMJG00000009779	ENSPMJG00000009777	ENTREP3 (ENSPMJG00000009775) #11	SCAMP3 (ENSPMJG00000009773) #12	CLK2 (ENSPMJG00000009772) #13	ENSPMJG00000009596	RUSC1 (ENSPMJG00000009590) #17	ASH1L (ENSPMJG00000009582) #19	DAP3 (ENSPMJG00000009380) #22	MSTO1 (ENSPMJG00000009348) #20	ENSPMJG00000009346 #23	ENSPMJG00000009344 #23	SYT11 (ENSPMJG00000009343) #24
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000005131	ENSGT00940000159779	ENSGT00390000006372	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT00940000161329
Flycatcher	MODERN SPECIES	17	ENSFALG00000002943 #7	TRIM46 (ENSFALG00000002935) #8	ENSFALG00000029011	THBS3 (ENSFALG00000002926) #10	MTX1 (ENSFALG00000002914)	ENSFALG00000002907	ENTREP3 (ENSFALG00000002889) #11	ENSFALG00000002898	SCAMP3 (ENSFALG00000002887) #12	CLK2 (ENSFALG00000002878) #13	ENSFALG00000002868	FDPS (ENSFALG00000027585) #16	ENSFALG00000023521	ENSFALG00000025768 #17	ASH1L (ENSFALG00000002841) #19	DAP3 (ENSFALG00000002836) #22	MSTO1 (ENSFALG00000024576) #20	ENSFALG00000024476	ENSFALG00000027616 #23	ENSFALG00000002782 #23	SYT11 (ENSFALG00000002759) #24	RIT1 (ENSFALG00000002755) #25	KHDC4 (ENSFALG00000002741) #26	HORMAD1 (ENSFALG00000002732)	ENSFALG00000024266	ENSA (ENSFALG00000026615)	ENSFALG00000004236	ENSFALG00000004241	ENSFALG00000026572	IGSF9 (ENSFALG00000004259)	ENSFALG00000004267
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000005131	ENSGT00940000159779	ENSGT00390000006372	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT00940000161329
Medium ground finch	MODERN SPECIES	279	TRIM46 (ENSGFOG00000009584) #8	ENSGFOG00000009595 #8	ENSGFOG00000009599	THBS3 (ENSGFOG00000009619) #10	MTX1 (ENSGFOG00000009660)	ENSGFOG00000009670	ENSGFOG00000009688	ENSGFOG00000009693	ENSGFOG00000009699 #11	SCAMP3 (ENSGFOG00000009709) #12	CLK2 (ENSGFOG00000009721) #13	ENSGFOG00000009767	FDPS (ENSGFOG00000009876) #16	ENSGFOG00000009889 #17	ENSGFOG00000009899 #17	DAP3 (ENSGFOG00000009946) #22	MSTO1 (ENSGFOG00000009956) #20	ENSGFOG00000010036 #23	SYT11 (ENSGFOG00000011320) #24	RIT1 (ENSGFOG00000011324) #25	KHDC4 (ENSGFOG00000011331) #26	HORMAD1 (ENSGFOG00000011336)	GOLPH3L (ENSGFOG00000011340)	ENSA (ENSGFOG00000011357)	ENSGFOG00000011360	ENSGFOG00000011370	PEX19 (ENSGFOG00000011377)	ENSGFOG00000011386	ENSGFOG00000011390	ATP1A2 (ENSGFOG00000011395)
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000005131	ENSGT00940000159779	ENSGT00390000006372	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT00940000161329
Zebra finch	MODERN SPECIES	18	KRTCAP2 (ENSTGUG00000029128) #7	TRIM46 (ENSTGUG00000016667) #8	ENSTGUG00000018950	THBS3 (ENSTGUG00000013839) #10	MTX1 (ENSTGUG00000026516)	ENSTGUG00000016265	ENSTGUG00000025414	ENSTGUG00000016660	ENTREP3 (ENSTGUG00000026181) #11	SCAMP3 (ENSTGUG00000016617) #12	CLK2 (ENSTGUG00000016576) #13	ENSTGUG00000016537	FDPS (ENSTGUG00000016507) #16	RUSC1 (ENSTGUG00000025519) #17	ASH1L (ENSTGUG00000017419) #19	DAP3 (ENSTGUG00000017418) #22	MSTO1 (ENSTGUG00000017416) #20	ENSTGUG00000017414 #23	ENSTGUG00000019175	SYT11 (ENSTGUG00000017412) #24	RIT1 (ENSTGUG00000023363) #25	KHDC4 (ENSTGUG00000017408) #26	HORMAD1 (ENSTGUG00000017407)	GOLPH3L (ENSTGUG00000017405)	ENSA (ENSTGUG00000022038)	MCL1 (ENSTGUG00000022286)	GLMP (ENSTGUG00000019667)	CADM3 (ENSTGUG00000021756)	ACKR1 (ENSTGUG00000025315)	ENSTGUG00000016438	DUSP23 (ENSTGUG00000016440)
Neognathae_c	ANCESTRAL SPECIES	33	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.b	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a.t #26	ENSGT00390000014874.c	ENSGT00510000047412.a.s #26	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b
Kakapo	MODERN SPECIES	60	ENSSHBG00005016744	TRIM46 (ENSSHBG00005016735) #8	ENSSHBG00005016731	THBS3 (ENSSHBG00005016709) #10	MTX1 (ENSSHBG00005016701)	ENSSHBG00005016684	ENSSHBG00005016645	ENSSHBG00005016627	ENTREP3 (ENSSHBG00005016620) #11	SCAMP3 (ENSSHBG00005016611) #12	CLK2 (ENSSHBG00005016596) #13	ENSSHBG00005016579	FDPS (ENSSHBG00005016562) #16	RUSC1 (ENSSHBG00005016555) #17	ASH1L (ENSSHBG00005016541) #19	DAP3 (ENSSHBG00005001011) #22	MSTO1 (ENSSHBG00005001008) #20	ENSSHBG00005000891 #23	SYT11 (ENSSHBG00005000841) #24	RIT1 (ENSSHBG00005017071) #25	KHDC4 (ENSSHBG00005017063) #26	ENSSHBG00005017052	ENSSHBG00005017046	GOLPH3L (ENSSHBG00005017040)	MCL1 (ENSSHBG00005017026)	GLMP (ENSSHBG00005017018)	NTRK1 (ENSSHBG00005017010)	INSRR (ENSSHBG00005016997)	ENSSHBG00005016986	PRCC (ENSSHBG00005016983)	MRPL24 (ENSSHBG00005016972)
Golden eagle	MODERN SPECIES	25	KRTCAP2 (ENSACCG00020008826) #7	TRIM46 (ENSACCG00020008850) #8	ENSACCG00020008865	THBS3 (ENSACCG00020008890) #10	MTX1 (ENSACCG00020008916)	ENSACCG00020009038	ENSACCG00020009122	ENSACCG00020009167	ENTREP3 (ENSACCG00020009192) #11	SCAMP3 (ENSACCG00020009206) #12	CLK2 (ENSACCG00020009226) #13	ENSACCG00020009273	FDPS (ENSACCG00020009323) #16	RUSC1 (ENSACCG00020009374) #17	ASH1L (ENSACCG00020009403) #19	DAP3 (ENSACCG00020009420) #22	MSTO1 (ENSACCG00020009435) #20	ENSACCG00020009719 #23	SYT11 (ENSACCG00020009933) #24	RIT1 (ENSACCG00020009940) #25	ENSACCG00020009951 #26	ENSACCG00020009973	ENSACCG00020009985 #26	ENSACCG00020009989 #26	ENSACCG00020009998	GOLPH3L (ENSACCG00020010010)	ENSA (ENSACCG00020010020)	MCL1 (ENSACCG00020010030)	SUSD2 (ENSACCG00020010055)	KREMEN1 (ENSACCG00020010068)	ZNRF3 (ENSACCG00020010085)
African ostrich	MODERN SPECIES	347								KRTCAP2 (ENSSCUG00000003666) #7	TRIM46 (ENSSCUG00000003668) #8	GBA1 (ENSSCUG00000003670)	SCAMP3 (ENSSCUG00000003674) #12	CLK2 (ENSSCUG00000003676) #13	FDPS (ENSSCUG00000003679) #16	ENSSCUG00000003682 #17	ASH1L (ENSSCUG00000003684) #19	DAP3 (ENSSCUG00000003685) #22	MSTO1 (ENSSCUG00000003686) #20	ENSSCUG00000003718 #23	SYT11 (ENSSCUG00000003791) #24	RIT1 (ENSSCUG00000003792) #25	KHDC4 (ENSSCUG00000003793) #26	SSR2 (ENSSCUG00000003801) #29	CCT3 (ENSSCUG00000003804)	SMG5 (ENSSCUG00000003808)	ENSSCUG00000003811	ENSSCUG00000003814	SLC25A44 (ENSSCUG00000003817) #37	LMNA (ENSSCUG00000003819) #34
Australian saltwater crocodile	MODERN SPECIES	25	DPM3 (ENSCPRG00005002593)	KRTCAP2 (ENSCPRG00005002596) #7	ENSCPRG00005002605	THBS3 (ENSCPRG00005002723) #10	MTX1 (ENSCPRG00005003233)	ENSCPRG00005003247	ENSCPRG00005003288	ENTREP3 (ENSCPRG00005003299) #11	CLK2 (ENSCPRG00005003335) #13	ENSCPRG00005003431	PKLR (ENSCPRG00005003450) #15	FDPS (ENSCPRG00005003507) #16	ENSCPRG00005003513 #17	ENSCPRG00005003520 #17	ASH1L (ENSCPRG00005003539) #19	DAP3 (ENSCPRG00005003641) #22	MSTO1 (ENSCPRG00005003685) #20	ENSCPRG00005003828 #23	SYT11 (ENSCPRG00005004624) #24	RIT1 (ENSCPRG00005004646) #25	KHDC4 (ENSCPRG00005004670) #26	ENSCPRG00005004829	ENSCPRG00005004833	CERS2 (ENSCPRG00005004837)	MINDY1 (ENSCPRG00005004850)	PRUNE1 (ENSCPRG00005004862)	ENSCPRG00005004871	S100A10 (ENSCPRG00005004877)	THEM4 (ENSCPRG00005004889)	CTSK (ENSCPRG00005004905)	ARNT (ENSCPRG00005005374)
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Emydidae	ANCESTRAL SPECIES	18	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT01030000235260	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Three-toed box turtle	MODERN SPECIES	178	EFNA1 (ENSTMTG00000016866)	KRTCAP2 (ENSTMTG00000016886) #7	TRIM46 (ENSTMTG00000016898) #8	THBS3 (ENSTMTG00000017049) #10	MTX1 (ENSTMTG00000017309)	ENSTMTG00000017348	ENSTMTG00000017659	ENSTMTG00000017704 #11	SCAMP3 (ENSTMTG00000017713) #12	CLK2 (ENSTMTG00000017735) #13	ENSTMTG00000017761	PKLR (ENSTMTG00000017819) #15	FDPS (ENSTMTG00000017849) #16	ENSTMTG00000017867 #17	ASH1L (ENSTMTG00000017881) #19	DAP3 (ENSTMTG00000017931) #22	MSTO1 (ENSTMTG00000017963) #20	ENSTMTG00000018062 #23	SYT11 (ENSTMTG00000018933) #24	RIT1 (ENSTMTG00000018946) #25	KHDC4 (ENSTMTG00000018959) #26
painted turtle	MODERN SPECIES	785	PAQR6 (ENSCPBG00000025845)	BGLAP (ENSCPBG00000025842)	PMF1 (ENSCPBG00000025840)	SLC25A44 (ENSCPBG00000025837) #37	SEMA4A (ENSCPBG00000025830) #35	ENSCPBG00000025823 #34	MEX3A (ENSCPBG00000025821) #33	ENSCPBG00000025819	RAB25 (ENSCPBG00000025817) #32	LAMTOR2 (ENSCPBG00000025814) #31	UBQLN4 (ENSCPBG00000025810) #30	GPATCH4 (ENSCPBG00000025803)	NAXE (ENSCPBG00000025800)	IQGAP3 (ENSCPBG00000025794)	ENSCPBG00000025790 #19	DAP3 (ENSCPBG00000025787) #22	MSTO1 (ENSCPBG00000025784) #20	ENSCPBG00000025730 #23	SYT11 (ENSCPBG00000025720) #24	RIT1 (ENSCPBG00000025719) #25	KHDC4 (ENSCPBG00000025715) #26	THBS3 (ENSCPBG00000025710) #10	MTX1 (ENSCPBG00000025708)	GBA1 (ENSCPBG00000025703)	ENSCPBG00000025702 #11	ENSCPBG00000025700 #11	SCAMP3 (ENSCPBG00000025699) #12	CLK2 (ENSCPBG00000025698) #13	ENSCPBG00000025697	PKLR (ENSCPBG00000025695) #15	FDPS (ENSCPBG00000025694) #16
Testudinidae	ANCESTRAL SPECIES	51	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00710000106874 #9	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464.j	ENSGT00390000009464.i.a	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00390000016256 #23	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00510000047412.a #26
Goode s thornscrub tortoise	MODERN SPECIES	16	ENSGEVG00005007827	ENSGEVG00005007737	ENSGEVG00005007721	ENSGEVG00005007240 #10	ENSGEVG00005007128	ENSGEVG00005006816	ENSGEVG00005006708	ENSGEVG00005006685 #11	ENSGEVG00005006665 #12	ENSGEVG00005006640 #13	ENSGEVG00005006491	PKLR (ENSGEVG00005006408) #15	FDPS (ENSGEVG00005006378) #16	ENSGEVG00005006357 #17	ASH1L (ENSGEVG00005006283) #19	DAP3 (ENSGEVG00005006232) #22	MSTO1 (ENSGEVG00005006198) #20	ENSGEVG00005006078 #23	SYT11 (ENSGEVG00005006029) #24	RIT1 (ENSGEVG00005006012) #25	KHDC4 (ENSGEVG00005005972) #26	ENSGEVG00005005954
Abingdon island giant tortoise	MODERN SPECIES	2593			ENSCABG00000017711	THBS3 (ENSCABG00000017716) #10	MTX1 (ENSCABG00000017734)	ENSCABG00000017738	ENSCABG00000017749	SCAMP3 (ENSCABG00000017843) #12	CLK2 (ENSCABG00000017845) #13	ENSCABG00000017890	ENSCABG00000017906 #15	FDPS (ENSCABG00000017909) #16	ENSCABG00000017912 #17	ENSCABG00000017913 #17	ASH1L (ENSCABG00000017918) #19	DAP3 (ENSCABG00000017924) #22	MSTO1 (ENSCABG00000017927) #20	ENSCABG00000017973 #23	SYT11 (ENSCABG00000019409) #24	RIT1 (ENSCABG00000019413) #25	KHDC4 (ENSCABG00000019418) #26
Chinese turtle	MODERN SPECIES	1774														FDPS (ENSPSIG00000005249) #16	ASH1L (ENSPSIG00000005574) #19	DAP3 (ENSPSIG00000005834) #22	MSTO1 (ENSPSIG00000006370) #20	ENSPSIG00000007306 #23	SYT11 (ENSPSIG00000007838) #24	RIT1 (ENSPSIG00000007923) #25	KHDC4 (ENSPSIG00000008263) #26	CERS2 (ENSPSIG00000008297)	SETDB1 (ENSPSIG00000008407)	ARNT (ENSPSIG00000008480)	CTSK (ENSPSIG00000010266)
Anura	ANCESTRAL SPECIES	83	ENSGT00390000008892	ENSGT00390000003552 #7	ENSGT00940000158021 #8	ENSGT00940000159283.d #10	ENSGT00950000182919.B.a	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000154947 #13	ENSGT00940000154743.A.b	ENSGT00390000008859.b.c #15	ENSGT00900000141074 #16	ENSGT00980000200493	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00530000064067 #20	ENSGT00940000164105	ENSGT00940000159088 #24	ENSGT00940000160132 #25	ENSGT00940000161314	ENSGT01080000257365.b.a.b.b	ENSGT00990000203615.b.a.a.a.a	ENSGT00940000159186	ENSGT00940000161394	ENSGT00940000157083	ENSGT00940000161411	ENSGT00940000157535	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT01010000229668
Frog	MODERN SPECIES	8	GBA1 (ENSXETG00000045974)	ENSXETG00000043601	ENSXETG00000043610	ENSXETG00000043875 ##11	ENTREP3 (ENSXETG00000045590) #11	ENSXETG00000044400	scamp3 (ENSXETG00000047212) #12	clk2 (ENSXETG00000017656) #13	ENSXETG00000044582	hcn3 (ENSXETG00000017651)	pklr (ENSXETG00000013164) #15	fdps (ENSXETG00000040625) #16	ENSXETG00000041042	ENSXETG00000042098 #17	ASH1L (ENSXETG00000048706) #19	dap3 (ENSXETG00000021441) #22	ENSXETG00000044089	msto1 (ENSXETG00000021439) #20	gon4l (ENSXETG00000021434)	syt11 (ENSXETG00000040089) #24	rit1 (ENSXETG00000012434) #25	XB5942349 [provisional:igsf8] (ENSXETG00000042336)	KCNJ9 (ENSXETG00000023557)	kcnj10 (ENSXETG00000019842)	f11r (ENSXETG00000047213)	usf1 (ENSXETG00000043784)	arhgap30 (ENSXETG00000019195)	NECTIN4 (ENSXETG00000047220)	ENSXETG00000049406	atp6v1al (ENSXETG00000048997)	ENSXETG00000049320
Leishan spiny toad	MODERN SPECIES	4	MTX1 (ENSLLEG00000017477)	THBS3 (ENSLLEG00000017250) #10	ENSLLEG00000017225	ENSLLEG00000017139	GBA1 (ENSLLEG00000016951)	ENTREP3 (ENSLLEG00000016807) #11	ENSLLEG00000016741	ENSLLEG00000016665 #12	ENSLLEG00000016636	CLK2 (ENSLLEG00000016536) #13	ENSLLEG00000016054	PKLR (ENSLLEG00000015194) #15	FDPS (ENSLLEG00000015089) #16	RUSC1 (ENSLLEG00000014810) #17	ASH1L (ENSLLEG00000014671) #19	DAP3 (ENSLLEG00000014541) #22	MSTO1 (ENSLLEG00000014423) #20	SYT11 (ENSLLEG00000014291) #24	ENSLLEG00000013959	RIT1 (ENSLLEG00000013907) #25	ENSLLEG00000013882	IGSF8 (ENSLLEG00000013822)	KCNJ9 (ENSLLEG00000013674)	KCNJ10 (ENSLLEG00000013630)	ENSLLEG00000013537	ENSLLEG00000012875	ENSLLEG00000012822	DAAM1 (ENSLLEG00000012355)	ENSLLEG00000012279	UNC79 (ENSLLEG00000011997)	ASB2 (ENSLLEG00000011838)
Coelacanth	MODERN SPECIES	938									GATAD2B (ENSLACG00000013888)	ENSLACG00000013585	CLK2 (ENSLACG00000012839) #13	PKLR (ENSLACG00000011423) #15	RUSC1 (ENSLACG00000010377) #17	ASH1L (ENSLACG00000008394) #19	ENSLACG00000007103	DAP3 (ENSLACG00000004658) #22	MSTO1 (ENSLACG00000003487) #20	ENSLACG00000002120
Actinopterygii	ANCESTRAL SPECIES	130	ENSGT00390000007266	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b	ENSGT00390000002996	ENSGT00390000009464	ENSGT00530000063335.B.a.a #11	ENSGT00940000160917 #12	ENSGT00940000157619	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c #15	ENSGT00940000154743.A.b	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230 #32	ENSGT00940000165149	ENSGT00940000166523
Neopterygii	ANCESTRAL SPECIES	45	ENSGT00390000002996	ENSGT00950000182870.a.a.b	ENSGT00390000007266	ENSGT00530000063948.a	ENSGT00730000111747	ENSGT00940000154172	ENSGT00940000171931	ENSGT00940000165956	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919	ENSGT00390000007801	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157585	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00940000164119	ENSGT00940000154201.a.a.b.d	ENSGT00940000154716	ENSGT00940000161136	ENSGT00940000159348	ENSGT00950000183094.a.m	ENSGT00390000011497	ENSGT00390000018360
Osteoglossocephalai	ANCESTRAL SPECIES	38	ENSGT00390000007801	ENSGT00940000158021 #8	ENSGT00390000003552 #7	ENSGT00940000165795	ENSGT00390000000920	ENSGT00950000183212.C	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698 #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716
Clupeocephala	ANCESTRAL SPECIES		ENSGT00940000164921.b	ENSGT00950000182891.b.b.a	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00390000009491.c	ENSGT00950000182891.b.a	ENSGT00940000155363.w	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136
Otomorpha	ANCESTRAL SPECIES	14	ENSGT00950000182932.A.b.b	ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136
Otophysi	ANCESTRAL SPECIES	1	ENSGT00390000009228.a	ENSGT00950000183060.a.b.b	ENSGT00970000198307	ENSGT00390000010577	ENSGT00390000009864	ENSGT01030000235056	ENSGT00550000075124	ENSGT00940000162969	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00390000010337.B.a.b	ENSGT00940000157621	ENSGT00940000164547.b.b
Characiphysae	ANCESTRAL SPECIES		ENSGT00970000198307	ENSGT00390000010577	ENSGT00390000009864	ENSGT01030000235056	ENSGT00550000075124	ENSGT00940000162969	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT01100000263479.H.d	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000164374.A.c.a.b	ENSGT00940000164374.A.c.a.a.a	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423.k	ENSGT00940000157619.a.a	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00390000010337.B.a.b	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d
Channel catfish	MODERN SPECIES		ENSIPUG00000008121	leng9 (ENSIPUG00000008163)	flcn (ENSIPUG00000008174)	zgc:174888 (ENSIPUG00000008234)	grwd1 (ENSIPUG00000008247)	cdc42ep5 (ENSIPUG00000008262)	atg12 (ENSIPUG00000008273)	ENSIPUG00000008280	VISI (ENSIPUG00000008303)	ENSIPUG00000008325	fdps (ENSIPUG00000008338) #16	ENSIPUG00000008355 #17	NF7B (ENSIPUG00000008380)	ENSIPUG00000008434	ash1l (ENSIPUG00000008470) #19	dap3 (ENSIPUG00000008508) #22	GBA (ENSIPUG00000008582)	Rnf115 (ENSIPUG00000008615)	polr3c (ENSIPUG00000008657)	ITGA10 (ENSIPUG00000008701)	crabp2a (ENSIPUG00000008754)	dscc1 (ENSIPUG00000008773)	deptor (ENSIPUG00000008868)	col14a1 (ENSIPUG00000008935)	mrpl13 (ENSIPUG00000009071)	mtbp (ENSIPUG00000009168)	sntb1 (ENSIPUG00000009370)	has2 (ENSIPUG00000009384)	ankib1 (ENSIPUG00000009420)	fabp4b (ENSIPUG00000009571)	stmn2a (ENSIPUG00000009580)
Characiphysae_b	ANCESTRAL SPECIES	15	ENSGT00970000198307	ENSGT00390000010577	ENSGT00390000009864	ENSGT01030000235056	ENSGT00550000075124	ENSGT00940000162969	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT01100000263479.H.d	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000164374.A.c.a.b	ENSGT00940000164374.A.c.a.a.a	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423.k	ENSGT00940000157619.a.a	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00390000010337.B.a.b	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d
Electric eel	MODERN SPECIES	33	ENSEEEG00000012843	ENSEEEG00000012844	flcn (ENSEEEG00000012845)	zgc:174888 (ENSEEEG00000012849)	grwd1 (ENSEEEG00000012850)	cdc42ep5 (ENSEEEG00000012851)	atg12 (ENSEEEG00000012852)	rcvrn2 (ENSEEEG00000012855)	ENSEEEG00000012856	fdps (ENSEEEG00000012857) #16	ENSEEEG00000012866 #17	ENSEEEG00000012867 #17	trim109 (ENSEEEG00000012868)	ENSEEEG00000012871	ENSEEEG00000012876	dap3 (ENSEEEG00000012878) #22	GBA1 (ENSEEEG00000012886)	rnf115a (ENSEEEG00000012963)	polr3c (ENSEEEG00000012964)	ITGA10 (ENSEEEG00000012968)	ENSEEEG00000012970	crabp2a (ENSEEEG00000012971)	dscc1 (ENSEEEG00000012974)	deptor (ENSEEEG00000012975)	COL14A1 (ENSEEEG00000012983)	mrpl13 (ENSEEEG00000012987)	MTBP (ENSEEEG00000012992)	sntb1 (ENSEEEG00000012999)	has2 (ENSEEEG00000013001)	ANKIB1 (ENSEEEG00000013010)	fabp4b (ENSEEEG00000013042)
Characoidei	ANCESTRAL SPECIES	28	ENSGT00390000009228.a	ENSGT00950000183060.a.b.b	ENSGT00390000010577	ENSGT00390000009864	ENSGT01030000235056	ENSGT00550000075124	ENSGT00940000162969	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000164374.A.c.a.b	ENSGT00940000164374.A.c.a.a.a	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423.k	ENSGT00940000157619.a.a	ENSGT00390000017400	ENSGT00520000055667
Red-bellied piranha	MODERN SPECIES	235	ENSPNAG00000018263	ENSPNAG00000003520	flcn (ENSPNAG00000018306)	zgc:174888 (ENSPNAG00000018320)	grwd1 (ENSPNAG00000018330)	cdc42ep5 (ENSPNAG00000003522)	atg12 (ENSPNAG00000003524)	ENSPNAG00000018366	rcvrn2 (ENSPNAG00000018380)	fdps (ENSPNAG00000018431) #16	ENSPNAG00000018455 #17	trim109 (ENSPNAG00000018466)	ENSPNAG00000018478	ENSPNAG00000003528	ENSPNAG00000018509 #19	dap3 (ENSPNAG00000018561) #22	GBA1 (ENSPNAG00000018577)	rnf115a (ENSPNAG00000018592)	polr3c (ENSPNAG00000018675)	ITGA10 (ENSPNAG00000018752)	crabp2a (ENSPNAG00000018777)	ENSPNAG00000018812
Mexicana tetra	MODERN SPECIES	2	ENSAMXG00000017895	g6fl (ENSAMXG00000017888)	abhd16a (ENSAMXG00000037005)	vars1 (ENSAMXG00000017716)	dync1i1 (ENSAMXG00000017693)	ZFAT (ENSAMXG00000017667)	rbfa (ENSAMXG00000042499)	adnp2a (ENSAMXG00000017652)	pard6ga (ENSAMXG00000035026)	zgc:136493 (ENSAMXG00000040662)	JARID2 (ENSAMXG00000017562)	dtnbp1a (ENSAMXG00000044114)	trim109 (ENSAMXG00000036357)	ENSAMXG00000038340	ENSAMXG00000016219 #19	dap3 (ENSAMXG00000016226) #22	GBA1 (ENSAMXG00000040472)	ENSAMXG00000016265	ENSAMXG00000016299	ENSAMXG00000030553	ccdc12 (ENSAMXG00000016319)	NBEAL2 (ENSAMXG00000016343)
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT00390000010577	ENSGT00390000009864	ENSGT01030000235056	ENSGT00550000075124	ENSGT00940000162969	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00610000087473	ENSGT00390000008061.j.b	ENSGT00900000141074 #16	ENSGT00940000164374.A.c.a.b	ENSGT00900000141033.b.b.o #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00390000010337.B.a.b	ENSGT00940000157621	ENSGT00940000164547.b.b
Cyprininae	ANCESTRAL SPECIES	7	ENSGT00390000009228.a.a	ENSGT00950000183060.a.b.b.f	ENSGT00390000010577.b	ENSGT00390000009864.b	ENSGT01030000235056.a.b	ENSGT00550000075124.g	ENSGT00940000162969.i	ENSGT00390000016654.u	ENSGT01050000244814.b.b.b	ENSGT00940000159441.k.f	ENSGT00940000177093	ENSGT00390000008061.j.b.c.b.a.a	ENSGT00900000141074.t #16	ENSGT00900000141033.b.b.o.a #17	ENSGT00940000156698.d.a #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c.a	ENSGT00390000002799.h	ENSGT00940000158423.i	ENSGT00940000157619.a.a.c	ENSGT00390000017400.a	ENSGT00520000055667.e	ENSGT00940000153769.F.n.a	ENSGT00390000001515.i	ENSGT00390000003305.d	ENSGT00950000182863.A.b.a	ENSGT00390000010337.B.a.b.u	ENSGT00940000157621.i	ENSGT00940000164547.b.b.d	ENSGT01030000234597.a.b.b.e.b.t.a.b
Goldfish	MODERN SPECIES	7	josd2 (ENSCARG00000048494)	ENSCARG00000048478	leng9 (ENSCARG00000048465)	flcn (ENSCARG00000047931)	zgc:174888 (ENSCARG00000047872)	grwd1 (ENSCARG00000047827)	cdc42ep5 (ENSCARG00000047822)	atg12 (ENSCARG00000047797)	ENSCARG00000047769	rcvrn2 (ENSCARG00000047755)	ENSCARG00000047743	fdps (ENSCARG00000047647) #16	ENSCARG00000047607 #17	trim109 (ENSCARG00000047547)	ENSCARG00000047529 #19	dap3 (ENSCARG00000045394) #22	GBA1 (ENSCARG00000047165)	rnf115a (ENSCARG00000045237)	polr3c (ENSCARG00000044682)	ITGA10 (ENSCARG00000044418)	crabp2a (ENSCARG00000044368)	dscc1 (ENSCARG00000044273)	deptor (ENSCARG00000044259)	COL14A1 (ENSCARG00000042027)	mrpl13 (ENSCARG00000041851)	MTBP (ENSCARG00000041712)	sntb1 (ENSCARG00000041658)	has2 (ENSCARG00000041625)	ANKIB1 (ENSCARG00000041469)	ENSCARG00000041405	stmn2a (ENSCARG00000041360)
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT00940000157149.ib	ENSGT00390000009228.a.a	ENSGT00950000183060.a.b.b.f	ENSGT00390000010577.b	ENSGT00390000009864.b	ENSGT00550000075124.g	ENSGT00940000162969.i	ENSGT00390000016654.u	ENSGT01050000244814.b.b.b	ENSGT00940000159441.k.f	ENSGT00940000177093	ENSGT00390000008061.j.b.c.b.a.a	ENSGT00900000141074.t #16	ENSGT00900000141033.b.b.o.a #17	ENSGT00940000156698.d.a #19	ENSGT00390000015248 #22	ENSGT00940000157203.c.a	ENSGT00390000002799.h	ENSGT00940000158423.i	ENSGT00940000157619.a.a.c	ENSGT00390000017400.a	ENSGT00520000055667.e	ENSGT00940000153769.F.n.a	ENSGT00390000001515.i	ENSGT00390000003305.d	ENSGT00950000182863.A.b.a	ENSGT00390000010337.B.a.b.u	ENSGT00940000157621.i	ENSGT00940000164547.b.b.d	ENSGT01030000234597.a.b.b.e.b.t.a.b	ENSGT00940000157781.f
Golden-line barbel	MODERN SPECIES	3863																dap3 (ENSSGRG00000007580) #22
Common carp reference	MODERN SPECIES	2	ube2s (ENSCCRG00000056122)	josd2 (ENSCCRG00000053608)	ENSCCRG00000029521	ENSCCRG00000022139	zgc:174888 (ENSCCRG00000078473)	grwd1 (ENSCCRG00000022133)	cdc42ep5 (ENSCCRG00000022129)	ENSCCRG00000072184	ENSCCRG00000066163	rcvrn2 (ENSCCRG00000074965)	ENSCCRG00000001159	fdps (ENSCCRG00000001135) #16	ENSCCRG00000001086 #17	trim109 (ENSCCRG00000081792)	ENSCCRG00000043356 #19	dap3 (ENSCCRG00000043398) #22	rnf115a (ENSCCRG00000076214)	polr3c (ENSCCRG00000043910)	ENSCCRG00000074510	ITGA10 (ENSCCRG00000029377)	crabp2a (ENSCCRG00000000451)	dscc1 (ENSCCRG00000012960)	deptor (ENSCCRG00000012964)	ENSCCRG00000079224	COL14A1 (ENSCCRG00000065350)	mrpl13 (ENSCCRG00000076250)	MTBP (ENSCCRG00000005425)	sntb1 (ENSCCRG00000005461)	has2 (ENSCCRG00000076666)	ENSCCRG00000052191	ENSCCRG00000071321
Zebrafish	MODERN SPECIES	7	flcn (ENSDARG00000062385)	zgc:174888 (ENSDARG00000077176)	grwd1 (ENSDARG00000004806)	cdc42ep5 (ENSDARG00000062390)	atg12 (ENSDARG00000069545)	ENSDARG00000038052	rcvrn2 (ENSDARG00000019902)	ENSDARG00000095047	zgc:162509 (ENSDARG00000070604)	ENSDARG00000094385	ENSDARG00000095688	fdps (ENSDARG00000040890) #16	ENSDARG00000078125 #17	trim109 (ENSDARG00000062429)	ENSDARG00000090817	dap3 (ENSDARG00000078500) #22	GBA1 (ENSDARG00000076058)	rnf115a (ENSDARG00000062450)	polr3c (ENSDARG00000057562)	ITGA10 (ENSDARG00000002507)	crabp2a (ENSDARG00000073978)	ENSDARG00000094303	dscc1 (ENSDARG00000019907)	deptor (ENSDARG00000040930)	COL14A1 (ENSDARG00000005762)	mrpl13 (ENSDARG00000056903)	MTBP (ENSDARG00000090447)	sntb1 (ENSDARG00000041729)	has2 (ENSDARG00000036987)	UBE2O (ENSDARG00000100674)	ANKIB1 (ENSDARG00000076829)
Clupeiformes	ANCESTRAL SPECIES		ENSGT00940000158731	ENSGT00390000009359.a.b	ENSGT00390000017736.a	ENSGT00940000167905	ENSGT00940000160411.i	ENSGT00940000166343.j	ENSGT00390000006753.A	ENSGT00390000016654	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000164374.A.c.a.a	ENSGT00940000156698.d #19	ENSGT01060000251363	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Atlantic herring	MODERN SPECIES	2	FSBP (ENSCHAG00000012044)	RAD54B (ENSCHAG00000011693)	ENSCHAG00000011678	VIRMA (ENSCHAG00000011668)	ENSCHAG00000011544	ENSCHAG00000011004	ENSCHAG00000010189	ENSCHAG00000009937	ddc (ENSCHAG00000009527)	fdps (ENSCHAG00000009413) #16	ENSCHAG00000009378 #17	ENSCHAG00000009360	ENSCHAG00000009337	ENSCHAG00000009306	ENSCHAG00000009294	dap3 (ENSCHAG00000009237) #22	GBA1 (ENSCHAG00000009079)	rnf115a (ENSCHAG00000009059)	polr3c (ENSCHAG00000008491)	ITGA10 (ENSCHAG00000008460)	crabp2a (ENSCHAG00000008445)	ENSCHAG00000008428	ca14 (ENSCHAG00000008369)	CIART (ENSCHAG00000008352)	prpf3 (ENSCHAG00000008244)	RPRD2 (ENSCHAG00000008220)	ENSCHAG00000007077	ENSCHAG00000007023	CELF3 (ENSCHAG00000007001)	CERS2 (ENSCHAG00000006978)	skp1 (ENSCHAG00000006968)
Euteleosteomorpha	ANCESTRAL SPECIES	59	ENSGT00390000014827	ENSGT00960000192046	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00390000009491.c	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000157619.b	ENSGT01030000234784
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00940000165795.c	ENSGT00960000187253	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00390000009491.c	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00940000154716.hc	ENSGT00940000171776	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000165795.c	ENSGT00960000187253	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00390000009491.c	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000266029	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591.d	ENSGT01100000263852	ENSGT01100000263591.c.a	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591.c.a	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a	ENSGT00940000154947.l #13
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a	ENSGT00940000154947.l #13
Stickleback	MODERN SPECIES	19	efna3b (ENSGACG00000012038)	efna1b (ENSGACG00000012018)	slc50a1 (ENSGACG00000012002)	TRIM46 (ENSGACG00000011991) #8	TMEM107 (ENSGACG00000011983)	ENSGACG00000011970	SNX27 (ENSGACG00000011965)	ENSGACG00000011957	adar (ENSGACG00000011951)	KCNN3 (ENSGACG00000011942)	ENSGACG00000011934	rab13 (ENSGACG00000011925)	ENSGACG00000011917 #11	fdps (ENSGACG00000011874) #16	ENSGACG00000011873 #17	dap3 (ENSGACG00000011859) #22	GBA1 (ENSGACG00000011848)	rnf115a (ENSGACG00000011841)	polr3c (ENSGACG00000011829)	ITGA10 (ENSGACG00000011820)	crabp2a (ENSGACG00000011813)	ca14 (ENSGACG00000011803)	prpf3 (ENSGACG00000011792)	ENSGACG00000011789	ENSGACG00000011734	ENSGACG00000011722	CELF3 (ENSGACG00000011707)	CERS2 (ENSGACG00000011695)	arnt (ENSGACG00000011686)	setdb1b (ENSGACG00000011675)	ENSGACG00000011670
Lumpfish	MODERN SPECIES	7	ENSCLMG00005012770	ENSCLMG00005012773	ENSCLMG00005012774	ENSCLMG00005012778	ENSCLMG00005012786	SNX27 (ENSCLMG00005012787)	ENSCLMG00005001377	adar (ENSCLMG00005001707)	KCNN3 (ENSCLMG00005002023)	ENSCLMG00005002025	rab13 (ENSCLMG00005002029)	ENSCLMG00005002032 #11	fdps (ENSCLMG00005002034) #16	ENSCLMG00005002063 #17	ENSCLMG00005002067	dap3 (ENSCLMG00005002077) #22	GBA1 (ENSCLMG00005002138)	rnf115a (ENSCLMG00005002402)	polr3c (ENSCLMG00005002406)	ITGA10 (ENSCLMG00005002630)	crabp2a (ENSCLMG00005002635)	ca14 (ENSCLMG00005002637)	ENSCLMG00005002641	prpf3 (ENSCLMG00005002646)	ENSCLMG00005002666	ENSCLMG00005002688	ENSCLMG00005008803	CELF3 (ENSCLMG00005008804)	CERS2 (ENSCLMG00005008805)	arnt (ENSCLMG00005008812)	setdb1b (ENSCLMG00005010098)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591.c.a	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a	ENSGT00940000154947.l #13
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000008154	ENSCGOG00000008151	ENSCGOG00000008148	ENSCGOG00000008147	ENSCGOG00000008146	SNX27 (ENSCGOG00000007628)	ENSCGOG00000007597	adar (ENSCGOG00000007148)	ENSCGOG00000007138	ENSCGOG00000007084	ENSCGOG00000006992	ENSCGOG00000006947 #11	fdps (ENSCGOG00000006560) #16	ENSCGOG00000006551 #17	ENSCGOG00000006549	dap3 (ENSCGOG00000006143) #22	GBA1 (ENSCGOG00000005999)	rnf115a (ENSCGOG00000005990)	polr3c (ENSCGOG00000005762)	ITGA10 (ENSCGOG00000005744)	crabp2a (ENSCGOG00000005736)	ca14 (ENSCGOG00000005720)	CIART (ENSCGOG00000005717)	prpf3 (ENSCGOG00000005098)	ENSCGOG00000005088	ENSCGOG00000005086	ENSCGOG00000004683	ENSCGOG00000004667	CELF3 (ENSCGOG00000003981)	CERS2 (ENSCGOG00000003927)	arnt (ENSCGOG00000002983)
Pike perch	MODERN SPECIES	15	krtcap2 (ENSSLUG00000012136) #7	ENSSLUG00000012146	ENSSLUG00000012150	ENSSLUG00000012160	ENSSLUG00000012163	SNX27 (ENSSLUG00000012186)	ENSSLUG00000012233	adar (ENSSLUG00000012261)	KCNN3 (ENSSLUG00000012668)	ENSSLUG00000012690	rab13 (ENSSLUG00000012708)	ENSSLUG00000012718 #11	fdps (ENSSLUG00000005158) #16	ENSSLUG00000005273 #17	ENSSLUG00000005291	dap3 (ENSSLUG00000005359) #22	GBA1 (ENSSLUG00000005653)	rnf115a (ENSSLUG00000005724)	polr3c (ENSSLUG00000005739)	ITGA10 (ENSSLUG00000005771)	crabp2a (ENSSLUG00000005867)	ca14 (ENSSLUG00000005873)	ENSSLUG00000005895	prpf3 (ENSSLUG00000005921)	ENSSLUG00000005975	ENSSLUG00000006094	ENSSLUG00000008552	CELF3 (ENSSLUG00000008730)	CERS2 (ENSSLUG00000008735)	ENSSLUG00000008743	arnt (ENSSLUG00000008830)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591.d	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591.d	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Large yellow croaker	MODERN SPECIES	484	TRIM46 (ENSLCRG00005009368) #8	tmem107 (ENSLCRG00005009367)	krtcap2 (ENSLCRG00005009366) #7	s100a10b (ENSLCRG00005009365)	ENSLCRG00005009364	ENSLCRG00005009363	SNX27 (ENSLCRG00005009012)	ENSLCRG00005009006	adar (ENSLCRG00005008829)	ENSLCRG00005008821	ENSLCRG00005008818	ENSLCRG00005008813	ENSLCRG00005008811 #11	fdps (ENSLCRG00005008808) #16	ENSLCRG00005008803 #17	dap3 (ENSLCRG00005008373) #22	GBA1 (ENSLCRG00005008261)	rnf115a (ENSLCRG00005008231)	polr3c (ENSLCRG00005008200)	ITGA10 (ENSLCRG00005008129)	crabp2a (ENSLCRG00005008118)	ENSLCRG00005008115	ca14 (ENSLCRG00005008112)	ENSLCRG00005008109	prpf3 (ENSLCRG00005008101)	ENSLCRG00005008092	ENSLCRG00005006911	ENSLCRG00005006884	CELF3 (ENSLCRG00005006865)	CERS2 (ENSLCRG00005006848)	arnt (ENSLCRG00005006183)
European seabass	MODERN SPECIES	6	ENSDLAG00005031608	ENSDLAG00005028016	ENSDLAG00005034403	ENSDLAG00005030187	ENSDLAG00005031554	ENSDLAG00005011804	ENSDLAG00005011779	adar (ENSDLAG00005011759)	ENSDLAG00005011602	ENSDLAG00005014946	ENSDLAG00005028206	ENSDLAG00005011531 #11	fdps (ENSDLAG00005011432) #16	ENSDLAG00005011406 #17	ENSDLAG00005011394 #19	dap3 (ENSDLAG00005011245) #22	ENSDLAG00005011233	rnf115a (ENSDLAG00005011219)	polr3c (ENSDLAG00005011069)	ITGA10 (ENSDLAG00005009841)	crabp2a (ENSDLAG00005009798)	ENSDLAG00005009781	CIART (ENSDLAG00005009769)	ENSDLAG00005009487	RPRD2 (ENSDLAG00005033013)	ENSDLAG00005007823	ENSDLAG00005007638	ENSDLAG00005007549	ENSDLAG00005007305	ENSDLAG00005006849	ENSDLAG00005033042
Ballan wrasse	MODERN SPECIES	97	smpd5 (ENSLBEG00000000634)	malsu1 (ENSLBEG00000000603)	NPY (ENSLBEG00000000596)	pals2a (ENSLBEG00000000577)	GSDME (ENSLBEG00000000548)	ENSLBEG00000000532	SNX27 (ENSLBEG00000000470)	ENSLBEG00000000410	adar (ENSLBEG00000000352)	KCNN3 (ENSLBEG00000000309)	ENSLBEG00000000272	rab13 (ENSLBEG00000026779)	ENSLBEG00000026739 #11	fdps (ENSLBEG00000026711) #16	ENSLBEG00000026666 #17	dap3 (ENSLBEG00000026641) #22	GBA1 (ENSLBEG00000026624)	rnf115a (ENSLBEG00000026606)	polr3c (ENSLBEG00000026567)	ITGA10 (ENSLBEG00000026514)	crabp2a (ENSLBEG00000026486)	ENSLBEG00000026474	ca14 (ENSLBEG00000026406)	CIART (ENSLBEG00000026371)	prpf3 (ENSLBEG00000026310)	RPRD2 (ENSLBEG00000026261)	ENSLBEG00000026238	ENSLBEG00000026210	CELF3 (ENSLBEG00000026140)	CERS2 (ENSLBEG00000026082)	arnt (ENSLBEG00000026037)
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00990000210733	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423
Fugu	MODERN SPECIES	19	TMEM107 (ENSTRUG00000029656)	krtcap2 (ENSTRUG00000007564) #7	ENSTRUG00000023896	ENSTRUG00000024845	ENSTRUG00000028951	ENSTRUG00000031029	SNX27 (ENSTRUG00000007624)	ENSTRUG00000028031	adar (ENSTRUG00000008870)	KCNN3 (ENSTRUG00000009204)	RPS27 (ENSTRUG00000031079)	rab13 (ENSTRUG00000024177)	ENSTRUG00000011298 #11	fdps (ENSTRUG00000022938) #16	ENSTRUG00000030558 #17	dap3 (ENSTRUG00000011013) #22	GBA1 (ENSTRUG00000010884)	rnf115a (ENSTRUG00000025017)	polr3c (ENSTRUG00000010726)	ITGA10 (ENSTRUG00000009933)	m6pr (ENSTRUG00000009804)	ENSTRUG00000020896	zgc:92606 (ENSTRUG00000019706)	ENSTRUG00000024780	trpv6 (ENSTRUG00000009207)	ENSTRUG00000008107	ENSTRUG00000007710	cox6b2 (ENSTRUG00000025595)	rasip1 (ENSTRUG00000007545)	il-11a (ENSTRUG00000027860)	ENSTRUG00000007250
Tetraodon	MODERN SPECIES	23	efna1b (ENSTNIG00000018328)	slc50a1 (ENSTNIG00000018327)	TRIM46 (ENSTNIG00000018326) #8	TMEM107 (ENSTNIG00000018325)	s100a10b (ENSTNIG00000018324)	ENSTNIG00000018323	ENSTNIG00000001579	SNX27 (ENSTNIG00000018322)	ENSTNIG00000018321	adar (ENSTNIG00000018320)	ENSTNIG00000002315	ENSTNIG00000018319	fdps (ENSTNIG00000018318) #16	ENSTNIG00000018317 #17	ENSTNIG00000018316 #19	dap3 (ENSTNIG00000018315) #22	GBA1 (ENSTNIG00000018314)	ENSTNIG00000018313	ENSTNIG00000008301	zgc:92606 (ENSTNIG00000008300)	si:dkey-26c10.5 (ENSTNIG00000008299)	trpv6 (ENSTNIG00000008298)	ENSTNIG00000008297	rnf115a (ENSTNIG00000019502)	polr3c (ENSTNIG00000019501)	ITGA10 (ENSTNIG00000019500)	ENSTNIG00000013823	cox6b2 (ENSTNIG00000008121)	rasip1 (ENSTNIG00000008120)	ENSTNIG00000000618	ZNF628 (ENSTNIG00000001164)
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Climbing perch	MODERN SPECIES	7	ENSATEG00000023709	ENSATEG00000023705 #7	s100a10b (ENSATEG00000029568)	ENSATEG00000029883	ENSATEG00000023700	ENSATEG00000023696	ENSATEG00000023690	adar (ENSATEG00000023684)	ENSATEG00000023679	ENSATEG00000029068	ENSATEG00000023662	ENSATEG00000029768 #11	fdps (ENSATEG00000023652) #16	ENSATEG00000026620 #17	ENSATEG00000023636 #19	dap3 (ENSATEG00000023629) #22	ENSATEG00000023624	rnf115a (ENSATEG00000023621)	polr3c (ENSATEG00000023618)	ITGA10 (ENSATEG00000023613)	crabp2a (ENSATEG00000023607)	ENSATEG00000023603	ENSATEG00000023599	CIART (ENSATEG00000029124)	ENSATEG00000023583	RPRD2 (ENSATEG00000023579)	ENSATEG00000023568	ENSATEG00000023565	ENSATEG00000023560	ENSATEG00000023554	ENSATEG00000023530
Siamese fighting fish	MODERN SPECIES	7	TRIM46 (ENSBSLG00000014975) #8	TMEM107 (ENSBSLG00000014962)	krtcap2 (ENSBSLG00000014949) #7	ENSBSLG00000014945	ENSBSLG00000014939	SNX27 (ENSBSLG00000014764)	ENSBSLG00000014707	adar (ENSBSLG00000014371)	KCNN3 (ENSBSLG00000014098)	ENSBSLG00000013690	rab13 (ENSBSLG00000013644)	ENSBSLG00000013617 #11	fdps (ENSBSLG00000013271) #16	ENSBSLG00000024451 #17	ENSBSLG00000024433 #19	dap3 (ENSBSLG00000024407) #22	GBA1 (ENSBSLG00000024067)	rnf115a (ENSBSLG00000024055)	polr3c (ENSBSLG00000024030)	ITGA10 (ENSBSLG00000023999)	ENSBSLG00000023995	crabp2a (ENSBSLG00000023990)	ca14 (ENSBSLG00000023965)	CIART (ENSBSLG00000023958)	prpf3 (ENSBSLG00000023892)	RPRD2 (ENSBSLG00000023861)	ENSBSLG00000023026	ADAMTSL4 (ENSBSLG00000022961)	CELF3 (ENSBSLG00000022896)	CERS2 (ENSBSLG00000022825)	arnt (ENSBSLG00000022577)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Barramundi perch	MODERN SPECIES	185	s100a10b (ENSLCAG00010025380)	ENSLCAG00010025377	ENSLCAG00010025375	ENSLCAG00010025372	ENSLCAG00010025370	SNX27 (ENSLCAG00010025341)	ENSLCAG00010025318	adar (ENSLCAG00010025308)	ENSLCAG00010025297	ENSLCAG00010025262	ENSLCAG00010025250	ENSLCAG00010025241 #11	fdps (ENSLCAG00010025211) #16	ENSLCAG00010025182 #17	ENSLCAG00010025169 #19	dap3 (ENSLCAG00010025142) #22	GBA1 (ENSLCAG00010025081)	rnf115a (ENSLCAG00010025041)	polr3c (ENSLCAG00010025028)	ITGA10 (ENSLCAG00010024930)	crabp2a (ENSLCAG00010024874)	ENSLCAG00010024871	ca14 (ENSLCAG00010024866)	CIART (ENSLCAG00010024858)	prpf3 (ENSLCAG00010024818)	RPRD2 (ENSLCAG00010024785)	ENSLCAG00010024719	ENSLCAG00010024687	CELF3 (ENSLCAG00010024666)	CERS2 (ENSLCAG00010024661)	arnt (ENSLCAG00010024634)
Seriola	ANCESTRAL SPECIES	28	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Greater amberjack	MODERN SPECIES	88	TMEM107 (ENSSDUG00000005858)	krtcap2 (ENSSDUG00000005880) #7	ENSSDUG00000005903	ENSSDUG00000005908	ENSSDUG00000005923	SNX27 (ENSSDUG00000005951)	ENSSDUG00000006023	adar (ENSSDUG00000006183)	ENSSDUG00000006219	rps27.2 (ENSSDUG00000006257)	ENSSDUG00000006307	ENSSDUG00000006343 #11	fdps (ENSSDUG00000006385) #16	ENSSDUG00000006434 #17	ENSSDUG00000006458	dap3 (ENSSDUG00000006478) #22	GBA1 (ENSSDUG00000006503)	rnf115a (ENSSDUG00000006528)	polr3c (ENSSDUG00000006590)	ITGA10 (ENSSDUG00000006650)	crabp2a (ENSSDUG00000006713)	ENSSDUG00000006722	ca14 (ENSSDUG00000006746)	CIART (ENSSDUG00000006818)	prpf3 (ENSSDUG00000006840)	ENSSDUG00000007143	RPRD2 (ENSSDUG00000007155)	ENSSDUG00000007180	ENSSDUG00000007219	CELF3 (ENSSDUG00000007239)	CERS2 (ENSSDUG00000007278)
Yellowtail amberjack	MODERN SPECIES	2521										rps27.2 (ENSSLDG00000015842)	ENSSLDG00000015823	ENSSLDG00000015799 #11	fdps (ENSSLDG00000015757) #16	ENSSLDG00000015729 #17	ENSSLDG00000015713	dap3 (ENSSLDG00000015702) #22	GBA1 (ENSSLDG00000015679)	rnf115a (ENSSLDG00000015661)	polr3c (ENSSLDG00000015614)	ITGA10 (ENSSLDG00000015567)	crabp2a (ENSSLDG00000015550)	ENSSLDG00000015537	ca14 (ENSSLDG00000015501)	CIART (ENSSLDG00000015471)	prpf3 (ENSSLDG00000015423)	RPRD2 (ENSSLDG00000015396)	ENSSLDG00000015367	ENSSLDG00000015340	CELF3 (ENSSLDG00000015302)	CERS2 (ENSSLDG00000015279)	arnt (ENSSLDG00000015250)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT01030000234782	ENSGT01100000266029	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Turbot	MODERN SPECIES		ENSSMAG00000016699 #7	ENSSMAG00000025230	ENSSMAG00000034885	ENSSMAG00000016684	ENSSMAG00000016627	ENSSMAG00000016561	ENSSMAG00000016519	adar (ENSSMAG00000016465)	ENSSMAG00000016408	ENSSMAG00000016390	ENSSMAG00000016376	ENSSMAG00000031583	ENSSMAG00000016344 #11	fdps (ENSSMAG00000016292) #16	ENSSMAG00000036592 #17	dap3 (ENSSMAG00000016184) #22	rnf115a (ENSSMAG00000016084)	polr3c (ENSSMAG00000016000)	ITGA10 (ENSSMAG00000015935)	ENSSMAG00000030369	ENSSMAG00000015902	ENSSMAG00000015835	CIART (ENSSMAG00000015791)	ENSSMAG00000015739	ENSSMAG00000030192	RPRD2 (ENSSMAG00000025690)	ENSSMAG00000015682	ENSSMAG00000015652	ENSSMAG00000015634	ENSSMAG00000015501	ENSSMAG00000015418
Tongue sole	MODERN SPECIES	4	ENSCSEG00000002186	ENSCSEG00000002199	ENSCSEG00000002203	ENSCSEG00000002205	DNAH5 (ENSCSEG00000002215)	SNX27 (ENSCSEG00000002263)	ENSCSEG00000002287	adar (ENSCSEG00000002318)	ENSCSEG00000002338	rps27.1 (ENSCSEG00000002346)	rab13 (ENSCSEG00000002358)	ENSCSEG00000002367 #11	fdps (ENSCSEG00000002370) #16	ENSCSEG00000002373 #17	ENSCSEG00000002383 #19	dap3 (ENSCSEG00000002386) #22	GBA1 (ENSCSEG00000002392)	rnf115a (ENSCSEG00000002414)	polr3c (ENSCSEG00000002425)	ITGA10 (ENSCSEG00000002443)	crabp2a (ENSCSEG00000002466)	ENSCSEG00000002472	ca14 (ENSCSEG00000002477)	CIART (ENSCSEG00000002522)	prpf3 (ENSCSEG00000002532)	RPRD2 (ENSCSEG00000002555)	ENSCSEG00000002562	ENSCSEG00000002578	CELF3 (ENSCSEG00000002581)	CERS2 (ENSCSEG00000002591)	arnt (ENSCSEG00000002962)
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000159989	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Atherinomorphae	ANCESTRAL SPECIES		ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243.h	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.a	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Turquoise killifish	MODERN SPECIES	1614	OLA.15633 (ENSNFUG00015022568)	ENSNFUG00015022566	ENSNFUG00015022564	ENSNFUG00015022563	SNX27B (ENSNFUG00015022194)	ENSNFUG00015022170	ENSNFUG00015022168	KCNN3 (ENSNFUG00015022149)	ENSNFUG00015022145	rab13 (ENSNFUG00015022144)	FAM189B (ENSNFUG00015022142) #11	FDPS (ENSNFUG00015022132) #16	ENSNFUG00015022129 #17	ENSNFUG00015022127 #19	ENSNFUG00015022125	dap3 (ENSNFUG00015022122) #22	GBA1 (ENSNFUG00015022075)	RNF115 (ENSNFUG00015022042)	polr3c (ENSNFUG00015022032)	ITGA10 (ENSNFUG00015021802)	crabp2a (ENSNFUG00015021796)	ENSNFUG00015021792	ca14 (ENSNFUG00015021788)	ENSNFUG00015021786	ENSNFUG00015020860	ENSNFUG00015020820	ADAMTSL4 (ENSNFUG00015020567)	ENSNFUG00015020548	CELF3B (ENSNFUG00015020545)	CERS2 (ENSNFUG00015020543)	arnt (ENSNFUG00015020531)
Mangrove rivulus	MODERN SPECIES	81	krtcap2 (ENSKMAG00000002407) #7	ENSKMAG00000002399	ENSKMAG00000002379	ENSKMAG00000002363	ENSKMAG00000002335	SNX27 (ENSKMAG00000002250)	ENSKMAG00000002115	adar (ENSKMAG00000002086)	ENSKMAG00000002017	ENSKMAG00000001970	rab13 (ENSKMAG00000001908)	ENSKMAG00000001878 #11	fdps (ENSKMAG00000001823) #16	ENSKMAG00000001771 #17	ENSKMAG00000001749	dap3 (ENSKMAG00000001741) #22	GBA1 (ENSKMAG00000001722)	rnf115a (ENSKMAG00000001643)	polr3c (ENSKMAG00000001574)	ITGA10 (ENSKMAG00000001549)	crabp2a (ENSKMAG00000001532)	ENSKMAG00000001521	ca14 (ENSKMAG00000001496)	ENSKMAG00000001480	prpf3 (ENSKMAG00000001390)	RPRD2 (ENSKMAG00000001366)	ENSKMAG00000001354	ENSKMAG00000001330	CELF3 (ENSKMAG00000001269)	CERS2 (ENSKMAG00000001244)	arnt (ENSKMAG00000001221)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT01030000234782	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.a.b #11	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Poeciliinae	ANCESTRAL SPECIES		ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Poecilia	ANCESTRAL SPECIES		ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
NAME_6	ANCESTRAL SPECIES	36	ENSGT00390000007801	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a.g	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f.g
Sailfin molly	MODERN SPECIES	1597													fdps (ENSPLAG00000019056) #16	ENSPLAG00000019024 #17	ENSPLAG00000019014	dap3 (ENSPLAG00000018996) #22	GBA1 (ENSPLAG00000018987)	rnf115a (ENSPLAG00000018983)	polr3c (ENSPLAG00000018932)	ITGA10 (ENSPLAG00000018881)
Amazon molly	MODERN SPECIES	328	s100a10b (ENSPFOG00000014844)	ENSPFOG00000023964	SNX27 (ENSPFOG00000014797)	ENSPFOG00000014681	adar (ENSPFOG00000014636)	KCNN3 (ENSPFOG00000014512)	ENSPFOG00000014468	rps27.1 (ENSPFOG00000014457)	ENSPFOG00000014443	ENSPFOG00000014418	ENSPFOG00000014386 #11	fdps (ENSPFOG00000014325) #16	ENSPFOG00000024756 #17	ENSPFOG00000022464 #19	ENSPFOG00000024568	dap3 (ENSPFOG00000014273) #22	GBA1 (ENSPFOG00000014161)	rnf115a (ENSPFOG00000014156)	polr3c (ENSPFOG00000014106)	ITGA10 (ENSPFOG00000013856)	crabp2a (ENSPFOG00000013813)	ENSPFOG00000020915	ca14 (ENSPFOG00000013735)	CIART (ENSPFOG00000013718)	prpf3 (ENSPFOG00000013638)	ENSPFOG00000013631	ENSPFOG00000013444	ENSPFOG00000013385	CELF3 (ENSPFOG00000013307)	CERS2 (ENSPFOG00000013108)
Guppy	MODERN SPECIES	446	TMEM107 (ENSPREG00000017327)	krtcap2 (ENSPREG00000017340) #7	ENSPREG00000017367	ENSPREG00000017383	ENSPREG00000017393	SNX27 (ENSPREG00000017408)	ENSPREG00000017438	adar (ENSPREG00000017446)	KCNN3 (ENSPREG00000017476)	ENSPREG00000017515	rab13 (ENSPREG00000017567)	ENSPREG00000017595 #11	fdps (ENSPREG00000017619) #16	ENSPREG00000017657 #17	ENSPREG00000017676	dap3 (ENSPREG00000017688) #22	ENSPREG00000017703	ENSPREG00000017720	rpp38 (ENSPREG00000017744)	nmt2 (ENSPREG00000017757)	FAM171A1 (ENSPREG00000017789)	ENSPREG00000017807	ENSPREG00000017812	ENSPREG00000017817	ENSPREG00000017824	ENSPREG00000017846	ENSPREG00000017869	ENSPREG00000017882	ENSPREG00000017944	ENSPREG00000017963	ENSPREG00000017988
Platyfish	MODERN SPECIES	17	TRIM46 (ENSXMAG00000007279) #8	TMEM107 (ENSXMAG00000007290)	krtcap2 (ENSXMAG00000028313) #7	s100a10b (ENSXMAG00000025542)	ENSXMAG00000025120	SNX27 (ENSXMAG00000010582)	ENSXMAG00000010571	adar (ENSXMAG00000010557)	KCNN3 (ENSXMAG00000016062)	ENSXMAG00000016092	ENSXMAG00000016094	ENSXMAG00000016123 #11	fdps (ENSXMAG00000016139) #16	ENSXMAG00000021842 #17	ENSXMAG00000027540 #19	dap3 (ENSXMAG00000016165) #22	GBA1 (ENSXMAG00000016183)	rnf115a (ENSXMAG00000021206)	polr3c (ENSXMAG00000016215)	ITGA10 (ENSXMAG00000016260)	crabp2a (ENSXMAG00000016304)	ENSXMAG00000019942	ca14 (ENSXMAG00000016324)	ENSXMAG00000026817	ENSXMAG00000029619	prpf3 (ENSXMAG00000016347)	RPRD2 (ENSXMAG00000016368)	ENSXMAG00000016382	ENSXMAG00000016454	CELF3 (ENSXMAG00000016475)	CERS2 (ENSXMAG00000016508)
NAME_4	ANCESTRAL SPECIES	1	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263591.j	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074.x #16	ENSGT00900000141074.w #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Mummichog	MODERN SPECIES	2225	krtcap2 (ENSFHEG00000020842) #7	s100a10b (ENSFHEG00000020856)	ENSFHEG00000020863	ENSFHEG00000000615	SNX27 (ENSFHEG00000020901)	ENSFHEG00000021075	adar (ENSFHEG00000021099)	KCNN3 (ENSFHEG00000021145)	ENSFHEG00000021179	rab13 (ENSFHEG00000021221)	ENSFHEG00000000524 #11	fdps (ENSFHEG00000021296) #16	fdps (ENSFHEG00000021384) #16	ENSFHEG00000021401 #17	ENSFHEG00000021416	dap3 (ENSFHEG00000021426) #22	GBA1 (ENSFHEG00000021460)	rnf115a (ENSFHEG00000021540)	polr3c (ENSFHEG00000000872)	ITGA10 (ENSFHEG00000021641)	crabp2a (ENSFHEG00000021658)	ENSFHEG00000021670	ca14 (ENSFHEG00000021685)	CIART (ENSFHEG00000021699)	prpf3 (ENSFHEG00000021746)	RPRD2 (ENSFHEG00000021755)	ENSFHEG00000021877	ENSFHEG00000021887	CELF3 (ENSFHEG00000021947)	CERS2 (ENSFHEG00000021996)	arnt (ENSFHEG00000022149)
Sheepshead minnow	MODERN SPECIES	329	s100a10b (ENSCVAG00000023020)	ENSCVAG00000023016	ENSCVAG00000000593	ENSCVAG00000023009	ENSCVAG00000023003	SNX27 (ENSCVAG00000022996)	ENSCVAG00000022917	adar (ENSCVAG00000022718)	KCNN3 (ENSCVAG00000022704)	ENSCVAG00000022667	ENSCVAG00000022649	ENSCVAG00000022631 #11	fdps (ENSCVAG00000022619) #16	ENSCVAG00000022613 #17	ENSCVAG00000022543	dap3 (ENSCVAG00000022528) #22	GBA1 (ENSCVAG00000022505)	rnf115a (ENSCVAG00000022495)	polr3c (ENSCVAG00000022458)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT01100000263591.k.a	ENSGT01100000263591.k.b	ENSGT01100000263591.l	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Indian medaka	MODERN SPECIES	5	ENSOMEG00000007580	ENSOMEG00000007606	ENSOMEG00000000725	ENSOMEG00000000192	ENSOMEG00000007671	SNX27 (ENSOMEG00000007740)	ENSOMEG00000007844	adar (ENSOMEG00000008019)	KCNN3 (ENSOMEG00000008116)	rps27.1 (ENSOMEG00000008171)	rab13 (ENSOMEG00000008210)	ENSOMEG00000008258 #11	fdps (ENSOMEG00000008297) #16	ENSOMEG00000008381 #17	ENSOMEG00000008402 #19	dap3 (ENSOMEG00000008436) #22	GBA1 (ENSOMEG00000008476)	rnf115a (ENSOMEG00000008504)	polr3c (ENSOMEG00000008558)	ITGA10 (ENSOMEG00000008660)	crabp2a (ENSOMEG00000008684)	ENSOMEG00000008697	ENSOMEG00000008710	ENSOMEG00000008727	ca14 (ENSOMEG00000008792)	CIART (ENSOMEG00000008836)	prpf3 (ENSOMEG00000000940)	ENSOMEG00000008935	ENSOMEG00000008953	ENSOMEG00000009022	ENSOMEG00000009061
Javanese ricefish	MODERN SPECIES	7	s100a10b (ENSOJAG00000017997)	ENSOJAG00000018009	ENSOJAG00000018018	ENSOJAG00000018031	ENSOJAG00000018045	SNX27 (ENSOJAG00000018117)	ENSOJAG00000018299	adar (ENSOJAG00000018317)	KCNN3 (ENSOJAG00000018584)	ENSOJAG00000018750	ENSOJAG00000018768	ENSOJAG00000018789 #11	fdps (ENSOJAG00000018806) #16	ENSOJAG00000018878 #17	ENSOJAG00000018892 ##17	dap3 (ENSOJAG00000018913) #22	GBA1 (ENSOJAG00000019129)	rnf115a (ENSOJAG00000019441)	polr3c (ENSOJAG00000019474)	ITGA10 (ENSOJAG00000019505)	crabp2a (ENSOJAG00000019646)	ENSOJAG00000019652	ca14 (ENSOJAG00000019663)	prpf3 (ENSOJAG00000019697)	ENSOJAG00000019793	ENSOJAG00000019800	ENSOJAG00000019837	ENSOJAG00000019873	CELF3 (ENSOJAG00000020014)	CERS2 (ENSOJAG00000020190)	arnt (ENSOJAG00000020250)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000162189	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000263591.m	ENSGT01100000263591.n	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000021817	ENSORLG00000025779	ENSORLG00000026610	ENSORLG00000030425	ENSORLG00000023516	SNX27 (ENSORLG00000009926)	ENSORLG00000009945	adar (ENSORLG00000009955)	ENSORLG00000009976	ENSORLG00000009985	ENSORLG00000025395	ENSORLG00000010008 #11	fdps (ENSORLG00000010041) #16	ENSORLG00000028077 #17	ENSORLG00000022122 #19	dap3 (ENSORLG00000010053) #22	gba (ENSORLG00000010079)	rnf115a (ENSORLG00000010107)	polr3c (ENSORLG00000010133)	ITGA10 (ENSORLG00000010249)	crabp2a (ENSORLG00000010277)	ENSORLG00000024479	ca14 (ENSORLG00000010291)	CIART (ENSORLG00000010295)	prpf3 (ENSORLG00000010330)	RPRD2 (ENSORLG00000010343)	ENSORLG00000010391	ENSORLG00000010424	CELF3 (ENSORLG00000010447)	CERS2 (ENSORLG00000010512)	arnt (ENSORLG00000010551)
Chinese medaka	MODERN SPECIES	467	s100a10b (ENSOSIG00000013061)	ENSOSIG00000013062	ENSOSIG00000013063	ENSOSIG00000013064	ENSOSIG00000013067	SNX27 (ENSOSIG00000013081)	ENSOSIG00000014238	adar (ENSOSIG00000014326)	KCNN3 (ENSOSIG00000015437)	ENSOSIG00000015560	ENSOSIG00000015561	ENSOSIG00000015562 #11	fdps (ENSOSIG00000015565) #16	ENSOSIG00000015661 #17	ENSOSIG00000015664 #19	dap3 (ENSOSIG00000015667) #22	GBA1 (ENSOSIG00000015867)	rnf115a (ENSOSIG00000015876)	polr3c (ENSOSIG00000015878)	ITGA10 (ENSOSIG00000015893)	crabp2a (ENSOSIG00000015997)	ENSOSIG00000016000	ENSOSIG00000016001	ca14 (ENSOSIG00000016006)	ENSOSIG00000016008	ENSOSIG00000016009	ENSOSIG00000016026	ENSOSIG00000017644	CELF3 (ENSOSIG00000017648)	CERS2 (ENSOSIG00000017658)	arnt (ENSOSIG00000017723)
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a	ENSGT00940000154947.l #13
Burton s mouthbrooder	MODERN SPECIES	466	TRIM46 (ENSHBUG00000000096) #8	tmem107 (ENSHBUG00000004006)	krtcap2 (ENSHBUG00000003975) #7	s100a10b (ENSHBUG00000003959)	ENSHBUG00000003952	SNX27 (ENSHBUG00000003931)	ENSHBUG00000003860	adar (ENSHBUG00000000091)	KCNN3 (ENSHBUG00000003795)	rps27.2 (ENSHBUG00000003753)	ENSHBUG00000003728	ENSHBUG00000003704 #11	fdps (ENSHBUG00000003690) #16	ENSHBUG00000003677 #17	ENSHBUG00000003667	dap3 (ENSHBUG00000003658) #22	GBA1 (ENSHBUG00000003642)	rnf115a (ENSHBUG00000003634)	polr3c (ENSHBUG00000003619)	ITGA10 (ENSHBUG00000003585)	crabp2a (ENSHBUG00000003556)	ca14 (ENSHBUG00000003531)	CIART (ENSHBUG00000003503)	prpf3 (ENSHBUG00000003493)	RPRD2 (ENSHBUG00000003420)	ENSHBUG00000003411	ENSHBUG00000003381	CELF3 (ENSHBUG00000003367)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a	ENSGT00940000154947.l #13
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00390000003552 #7	ENSGT00940000162189	ENSGT01030000234782	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a	ENSGT00940000154947.l #13
Eastern happy	MODERN SPECIES	2	tmem107 (ENSACLG00000019092)	krtcap2 (ENSACLG00000019130) #7	s100a10b (ENSACLG00000019151)	ENSACLG00000019155	SNX27 (ENSACLG00000019165)	ENSACLG00000019229	adar (ENSACLG00000019448)	KCNN3 (ENSACLG00000019548)	rps27.2 (ENSACLG00000019602)	ENSACLG00000019643	ENSACLG00000019658	ENSACLG00000019675 #11	fdps (ENSACLG00000019710) #16	ENSACLG00000019774 #17	ENSACLG00000019798	dap3 (ENSACLG00000019804) #22	GBA1 (ENSACLG00000019877)	rnf115a (ENSACLG00000019901)	polr3c (ENSACLG00000019970)	ITGA10 (ENSACLG00000020004)	crabp2a (ENSACLG00000020063)	ca14 (ENSACLG00000020088)	CIART (ENSACLG00000020117)	prpf3 (ENSACLG00000020127)	RPRD2 (ENSACLG00000020253)	ENSACLG00000020262	ENSACLG00000020296	CELF3 (ENSACLG00000020342)	CERS2 (ENSACLG00000020370)	arnt (ENSACLG00000020427)	setdb1b (ENSACLG00000020489)
Zebra mbuna	MODERN SPECIES	1093	TRIM46 (ENSMZEG00005015402) #8	tmem107 (ENSMZEG00005015423)	krtcap2 (ENSMZEG00005015446) #7	s100a10b (ENSMZEG00005015453)	ENSMZEG00005015458	SNX27 (ENSMZEG00005015476)	ENSMZEG00005015513	adar (ENSMZEG00005015777)	KCNN3 (ENSMZEG00005015793)	rps27.2 (ENSMZEG00005015801)	ENSMZEG00005015817	ENSMZEG00005015829 #11	fdps (ENSMZEG00005015843) #16	ENSMZEG00005015850 #17	ENSMZEG00005015860	dap3 (ENSMZEG00005015864) #22	GBA1 (ENSMZEG00005015871)	rnf115a (ENSMZEG00005015878)	polr3c (ENSMZEG00005015882)	ITGA10 (ENSMZEG00005015917)	crabp2a (ENSMZEG00005015933)	ca14 (ENSMZEG00005015942)	CIART (ENSMZEG00005015953)	prpf3 (ENSMZEG00005015970)	RPRD2 (ENSMZEG00005015983)	ENSMZEG00005015989	ENSMZEG00005015998	CELF3 (ENSMZEG00005016013)	CERS2 (ENSMZEG00005016071)	arnt (ENSMZEG00005016081)	setdb1b (ENSMZEG00005016099)
P. nyererei	MODERN SPECIES	340	TRIM46 (ENSPNYG00000005112) #8	tmem107 (ENSPNYG00000005084)	krtcap2 (ENSPNYG00000005070) #7	s100a10b (ENSPNYG00000005042)	ENSPNYG00000005030	SNX27 (ENSPNYG00000004988)	ENSPNYG00000004885	adar (ENSPNYG00000004823)	KCNN3 (ENSPNYG00000004786)	rps27.2 (ENSPNYG00000004718)	ENSPNYG00000004681	ENSPNYG00000004630 #11	fdps (ENSPNYG00000004603) #16	ENSPNYG00000004585 #17	ENSPNYG00000004578	dap3 (ENSPNYG00000004551) #22	GBA1 (ENSPNYG00000004543)	rnf115a (ENSPNYG00000004530)	polr3c (ENSPNYG00000004504)	ITGA10 (ENSPNYG00000004429)	crabp2a (ENSPNYG00000004411)	ca14 (ENSPNYG00000004389)	CIART (ENSPNYG00000004366)	prpf3 (ENSPNYG00000004279)	RPRD2 (ENSPNYG00000004252)	ENSPNYG00000004232	ENSPNYG00000004203	CELF3 (ENSPNYG00000004167)	CERS2 (ENSPNYG00000004111)	arnt (ENSPNYG00000004092)	setdb1b (ENSPNYG00000003997)
Lyretail cichlid	MODERN SPECIES	421	slc50a1 (ENSNBRG00000005047)	TRIM46 (ENSNBRG00000005003) #8	tmem107 (ENSNBRG00000004974)	krtcap2 (ENSNBRG00000004954) #7	s100a10b (ENSNBRG00000004944)	ENSNBRG00000004933	SNX27 (ENSNBRG00000004884)	ENSNBRG00000004856	adar (ENSNBRG00000004510)	KCNN3 (ENSNBRG00000004458)	rps27.2 (ENSNBRG00000004408)	rab13 (ENSNBRG00000004124)	ENSNBRG00000004012 #11	fdps (ENSNBRG00000003942) #16	ENSNBRG00000003898 #17	dap3 (ENSNBRG00000003880) #22	GBA1 (ENSNBRG00000003782)	rnf115a (ENSNBRG00000003743)	polr3c (ENSNBRG00000003707)	ITGA10 (ENSNBRG00000003630)	crabp2a (ENSNBRG00000003596)	ENSNBRG00000003588	ca14 (ENSNBRG00000003555)	ENSNBRG00000003513	prpf3 (ENSNBRG00000003462)	ENSNBRG00000003446	ENSNBRG00000003429	ENSNBRG00000003412	CELF3 (ENSNBRG00000003364)	CERS2 (ENSNBRG00000003338)	arnt (ENSNBRG00000003317)
Nile tilapia	MODERN SPECIES	2	TRIM46 (ENSONIG00000006313) #8	tmem107 (ENSONIG00000028989)	krtcap2 (ENSONIG00000031207) #7	s100a10b (ENSONIG00000006321)	ENSONIG00000032138	SNX27 (ENSONIG00000006322)	ENSONIG00000006328	adar (ENSONIG00000006335)	KCNN3 (ENSONIG00000006336)	ENSONIG00000032846	ENSONIG00000039850	ENSONIG00000006343 #11	fdps (ENSONIG00000006344) #16	ENSONIG00000028896 #17	ENSONIG00000006351 #19	dap3 (ENSONIG00000006354) #22	GBA1 (ENSONIG00000006359)	rnf115 (ENSONIG00000042941)	polr3c (ENSONIG00000006370)	ITGA10 (ENSONIG00000006374)	crabp2a (ENSONIG00000006388)	ca14 (ENSONIG00000006390)	CIART (ENSONIG00000032306)	prpf3 (ENSONIG00000006394)	RPRD2 (ENSONIG00000006400)	ENSONIG00000006402	ENSONIG00000006410	CELF3 (ENSONIG00000006421)	CERS2 (ENSONIG00000006425)	arnt (ENSONIG00000006431)	setdb1b (ENSONIG00000006454)
Midas cichlid	MODERN SPECIES	791								adar (ENSACIG00000008672)	ENSACIG00000008652	KCNN3 (ENSACIG00000008628)	ENSACIG00000008615	rab13 (ENSACIG00000008584)	ENSACIG00000008516 #11	ENSACIG00000008477 #17	ENSACIG00000008471	dap3 (ENSACIG00000008298) #22	GBA1 (ENSACIG00000008199)	rnf115a (ENSACIG00000008100)	polr3c (ENSACIG00000008064)	ITGA10 (ENSACIG00000008000)	crabp2a (ENSACIG00000007975)	ENSACIG00000007970	ca14 (ENSACIG00000007927)	ENSACIG00000007911	prpf3 (ENSACIG00000007876)	ENSACIG00000007864	ENSACIG00000007828	ENSACIG00000007759	ENSACIG00000007730	CELF3 (ENSACIG00000007698)	CERS2 (ENSACIG00000007675)
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00940000165795.c	ENSGT00390000003552 #7	ENSGT01030000234782	ENSGT01100000263852	ENSGT01100000264774	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.a.a.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893
Pomacentridae_A	ANCESTRAL SPECIES	5										ENSGT00950000182891.a.a.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT01030000234782	ENSGT00390000003552 #7	ENSGT00940000165795.c	ENSGT00390000014827	ENSGT00940000158021.d #8	ENSGT00390000007801	ENSGT00940000159919.a	ENSGT00940000161355
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000158021.d #8	ENSGT00390000014827	ENSGT00940000165795.c	ENSGT00390000003552 #7	ENSGT01030000234782	ENSGT00940000155356.d.b.b.b.a.c.b.a.b	ENSGT00940000156893	ENSGT01030000234784	ENSGT00950000182904.a.a.a.a.i	ENSGT00950000182891.a.a.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000174526	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a
Clown anemonefish	MODERN SPECIES	2681															ENSAOCG00000017866 #17	dap3 (ENSAOCG00000017856) #22	ENSAOCG00000017837
Orange clownfish	MODERN SPECIES	21	slc50a1 (ENSAPEG00000003836)	TRIM46 (ENSAPEG00000003853) #8	TMEM107 (ENSAPEG00000003891)	ENSAPEG00000003904	krtcap2 (ENSAPEG00000003919) #7	ENSAPEG00000003946	ENSAPEG00000003957	ca14 (ENSAPEG00000004009)	ENSAPEG00000004024	ENSAPEG00000004072	ENSAPEG00000004121	ENSAPEG00000004159 #11	fdps (ENSAPEG00000004219) #16	ENSAPEG00000004268 #17	ENSAPEG00000004289	dap3 (ENSAPEG00000004308) #22	GBA1 (ENSAPEG00000004328)	rnf115a (ENSAPEG00000004351)	polr3c (ENSAPEG00000004426)	ITGA10 (ENSAPEG00000004512)	crabp2a (ENSAPEG00000004598)	ENSAPEG00000004639	tgfb2 (ENSAPEG00000004688)	KCNN3 (ENSAPEG00000004701)	ENSAPEG00000004743	adar (ENSAPEG00000004762)	ENSAPEG00000004798	SNX27 (ENSAPEG00000004880)	ENSAPEG00000004926	ENSAPEG00000005044	vegfaa (ENSAPEG00000005064)
Spiny chromis	MODERN SPECIES	1402										ENSAPOG00000021935	ENSAPOG00000001040	ENSAPOG00000021876 #11	fdps (ENSAPOG00000021832) #16	ENSAPOG00000021798 #17	ENSAPOG00000021739	dap3 (ENSAPOG00000021719) #22	GBA1 (ENSAPOG00000021565)
Bicolor damselfish	MODERN SPECIES	443	krtcap2 (ENSSPAG00000022281) #7	ENSSPAG00000022294	ENSSPAG00000022297	ENSSPAG00000022302	ENSSPAG00000022315	SNX27 (ENSSPAG00000022329)	ENSSPAG00000022354	adar (ENSSPAG00000022397)	KCNN3 (ENSSPAG00000022408)	ENSSPAG00000022424	ENSSPAG00000022440	ENSSPAG00000022454 #11	fdps (ENSSPAG00000022468) #16	ENSSPAG00000022479 #17	ENSSPAG00000022497 #19	dap3 (ENSSPAG00000022501) #22	GBA1 (ENSSPAG00000022508)	rnf115a (ENSSPAG00000022514)	polr3c (ENSSPAG00000022520)	ITGA10 (ENSSPAG00000022533)	crabp2a (ENSSPAG00000022540)	ENSSPAG00000022543	ca14 (ENSSPAG00000022549)
Tiger tail seahorse	MODERN SPECIES	276	s100a10b (ENSHCOG00000007606)	ENSHCOG00000007595	ENSHCOG00000007586	ENSHCOG00000000693	ENSHCOG00000007573	SNX27 (ENSHCOG00000007557)	ENSHCOG00000007531	adar (ENSHCOG00000007480)	ENSHCOG00000007469	ENSHCOG00000007456	rab13 (ENSHCOG00000007440)	ENSHCOG00000007316 #11	fdps (ENSHCOG00000007300) #16	ENSHCOG00000007269 #17	ENSHCOG00000007261 #19	dap3 (ENSHCOG00000007242) #22	GBA1 (ENSHCOG00000007223)	rnf115a (ENSHCOG00000007208)	lamtor2 (ENSHCOG00000007197) #31	rab25b (ENSHCOG00000007187) #32	rab11al (ENSHCOG00000000232)	ENSHCOG00000007164	lmna (ENSHCOG00000007151) #34	ENSHCOG00000007132	gpatch4 (ENSHCOG00000007016)	ENSHCOG00000006996	tspan13a (ENSHCOG00000006990)	bag6 (ENSHCOG00000006980)	glrx3 (ENSHCOG00000006958)	ENSHCOG00000000206	tnfb (ENSHCOG00000006938)
Pinecone sodierfish	MODERN SPECIES	7	TMEM107 (ENSMMDG00005015360)	krtcap2 (ENSMMDG00005015368) #7	ENSMMDG00005015373	s100w (ENSMMDG00005015374)	SNX27 (ENSMMDG00005015389)	ENSMMDG00005015405	adar (ENSMMDG00005015430)	KCNN3 (ENSMMDG00005016624)	ENSMMDG00005016631	rps27.2 (ENSMMDG00005016636)	rab13 (ENSMMDG00005016644)	ENSMMDG00005016649 #11	fdps (ENSMMDG00005016653) #16	ENSMMDG00005016658 #17	ENSMMDG00005016662	dap3 (ENSMMDG00005016665) #22	GBA1 (ENSMMDG00005016674)	rnf115a (ENSMMDG00005016848)	polr3c (ENSMMDG00005001235)	ITGA10 (ENSMMDG00005001325)	crabp2a (ENSMMDG00005001337)	ENSMMDG00005001343	ca14 (ENSMMDG00005001354)	CIART (ENSMMDG00005001358)	prpf3 (ENSMMDG00005001387)	RPRD2 (ENSMMDG00005001477)	ENSMMDG00005001699	ENSMMDG00005006773	CELF3 (ENSMMDG00005006781)	CERS2 (ENSMMDG00005006785)	arnt (ENSMMDG00005006813)
Cod	MODERN SPECIES	2	ENSGMOG00000019117 #8	ENSGMOG00000019110	ENSGMOG00000023656 #7	ENSGMOG00000029217	s100w (ENSGMOG00000032708)	ENSGMOG00000019093	ENSGMOG00000034031	ENSGMOG00000019076	adar (ENSGMOG00000019052)	ENSGMOG00000035529	ENSGMOG00000019033	rab13 (ENSGMOG00000035469)	ENSGMOG00000019001 #11	fdps (ENSGMOG00000018991) #16	ENSGMOG00000031890 #17	dap3 (ENSGMOG00000018965) #22	ENSGMOG00000018954	rnf115a (ENSGMOG00000018949)	polr3c (ENSGMOG00000018937)	ITGA10 (ENSGMOG00000018921)	ENSGMOG00000026151	ENSGMOG00000037061	ENSGMOG00000023405	ENSGMOG00000025191	ENSGMOG00000033521	ENSGMOG00000008551	ENSGMOG00000008535	ENSGMOG00000016100	ENSGMOG00000031680	glipr2l (ENSGMOG00000016072)	ENSGMOG00000034945
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00960000187253	ENSGT00390000000920.i	ENSGT00940000167671	ENSGT01100000263484.C.b.b	ENSGT00950000183212.C.c.b	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00390000009491.c	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248 #22	ENSGT00390000004989.b	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000154716.gc.a	ENSGT00940000161136	ENSGT00940000159348	ENSGT00950000183094.a.m	ENSGT00940000177218	ENSGT00390000011497
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000015248.c.a #22
Huchen	MODERN SPECIES	4294																dap3 (ENSHHUG00000048494) #22	ENSHHUG00000048560	ENSHHUG00000048562	GBA1 (ENSHHUG00000048567)	rnf115a (ENSHHUG00000048622)	polr3c (ENSHHUG00000048630)	ENSHHUG00000048643
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000015248.c.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000015248.c.a #22
Rainbow trout	MODERN SPECIES	11	adar (ENSOMYG00000003916)	ENSOMYG00000065292	ENSOMYG00000057834	ENSOMYG00000062953	ENSOMYG00000065652	ENSOMYG00000075182	ENSOMYG00000061800	ENSOMYG00000074469	ENSOMYG00000049714	ENSOMYG00000001212	rab13 (ENSOMYG00000057150)	ENSOMYG00000066250 #11	FDPS (ENSOMYG00000065726) #16	ENSOMYG00000077518 #17	ENSOMYG00000056334 #19	dap3 (ENSOMYG00000038844) #22	ENSOMYG00000065435	ENSOMYG00000002171	rnf115a (ENSOMYG00000002292)	polr3c (ENSOMYG00000002374)	ITGA10 (ENSOMYG00000062913)	ENSOMYG00000050019	crabp2a (ENSOMYG00000054803)	ENSOMYG00000003951	arnt (ENSOMYG00000004218)	ENSOMYG00000025358	ENSOMYG00000077550	ENSOMYG00000061678	ENSOMYG00000004621	RPRD2 (ENSOMYG00000004723)	ENSOMYG00000004840
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000015248.c.b.a #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000015248.c.b.a #22
Salmo	ANCESTRAL SPECIES																	ENSGT00390000015248.c.b.a #22
Atlantic salmon	MODERN SPECIES	24	S10I (ENSSSAG00000082318)	ENSSSAG00000050403	ENSSSAG00000050415	ENSSSAG00000021127	ENSSSAG00000050443	ENSSSAG00000005257	adar (ENSSSAG00000006364)	ENSSSAG00000094347	ENSSSAG00000110410	ENSSSAG00000007965	ENSSSAG00000086818	ENSSSAG00000098643 #11	ENSSSAG00000008020 #16	ENSSSAG00000094933 #17	ENSSSAG00000106544	dap3 (ENSSSAG00000005363) #22	ENSSSAG00000086072	ENSSSAG00000087453	ENSSSAG00000099611	rnf115a (ENSSSAG00000005342)	ENSSSAG00000115950	polr3c (ENSSSAG00000005255)	crabp2a (ENSSSAG00000082499)	ENSSSAG00000081758	ENSSSAG00000059839	ENSSSAG00000116457	ENSSSAG00000065111	ENSSSAG00000060546	ENSSSAG00000090396	ENSSSAG00000005496	RPRD2 (ENSSSAG00000005473)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000015248.c.b.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000015248.c.b.a #22
Chinook salmon	MODERN SPECIES	31	CDH22 (ENSOTSG00005022807)	ENSOTSG00005022806	tfap2c (ENSOTSG00005022805)	GCNT7 (ENSOTSG00005022803)	rtf2 (ENSOTSG00005022798)	ENSOTSG00005022796	eya2 (ENSOTSG00005022789)	ENSOTSG00005022787	pxmp4 (ENSOTSG00005022785)	itcha (ENSOTSG00005016301)	ENSOTSG00005016272	cbfa2t2 (ENSOTSG00005016129)	cbfa2t2 (ENSOTSG00005016127)	SNTA1 (ENSOTSG00005016124)	tox2 (ENSOTSG00005016122)	dap3 (ENSOTSG00005015992) #22	ENSOTSG00005015985	ENSOTSG00005015984	polr3c (ENSOTSG00005015982)	KCNQ2 (ENSOTSG00005015978)	CHRNA4 (ENSOTSG00005015974)	ENSOTSG00005015972	arfrp1 (ENSOTSG00005015970)	ENSOTSG00005015969	ENSOTSG00005015968	STMN3 (ENSOTSG00005015967)	HELZ2 (ENSOTSG00005015887)	stk35l (ENSOTSG00005015886)	FNDC11 (ENSOTSG00005015885)	ENSOTSG00005015884	SERINC3 (ENSOTSG00005015883)
Salmoninae	ANCESTRAL SPECIES	230	ENSGT00390000000920.i	ENSGT00940000167671	ENSGT01100000263484.C.b.b	ENSGT00950000183212.C.c.b.a	ENSGT00940000164921.a.c	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00390000009491.c.s.a	ENSGT00950000182891.b.a.b.a	ENSGT00940000159989.v.a.a	ENSGT00530000063335.B.a.a.a.b #11	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248.c.b.b #22	ENSGT00390000009464.e.b.b	ENSGT00390000004989.b	ENSGT00390000009464.e.a	ENSGT00940000157203.c	ENSGT00390000002799.d	ENSGT00940000158423.m	ENSGT00390000002799.c.b	ENSGT00940000158423.n	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585	ENSGT01030000234515.a.b.a.a.f.j	ENSGT00940000154716.gc.a.h	ENSGT00940000161136.g.a	ENSGT00940000154716.gc.a.g.a.b
Huchen	MODERN SPECIES	4049														ENSHHUG00000005372	ENSHHUG00000005352	dap3 (ENSHHUG00000005288) #22	ENSHHUG00000005252	ENSHHUG00000005246	ENSHHUG00000005241	rnf115a (ENSHHUG00000005224)	polr3c (ENSHHUG00000005217)
Salmoninae_a	ANCESTRAL SPECIES	89	ENSGT00940000164921.a.c.b	ENSGT00940000164921.a.c.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a	ENSGT00390000009491.c.s.a	ENSGT00390000009491.c.s.b	ENSGT00950000182891.b.a.b.a	ENSGT00940000159989.v.b	ENSGT00950000182891.b.a.b.b.a	ENSGT00940000159989.u	ENSGT00530000063335.B.a.a.a.a #11	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248.c.b.b #22	ENSGT00390000009464.e.b.b	ENSGT00390000004989.b	ENSGT00390000009464.e.a	ENSGT00940000157203.c	ENSGT00390000002799.d	ENSGT00940000158423.m	ENSGT00390000002799.c.b	ENSGT00940000158423.n	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585	ENSGT01030000234515.a.b.a.a.f.i.a	ENSGT00390000010641.i.a.c.b	ENSGT00940000160219	ENSGT00940000154743.A.a.a.k.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	279																ENSGT00390000015248.c.b.b.a #22	ENSGT00390000004989.b	ENSGT00390000009464.e.a	ENSGT00940000157203.c	ENSGT00390000002799.c.b	ENSGT00940000158423.n	ENSGT00940000157619.a.a.f
Atlantic salmon	MODERN SPECIES	11	S10A5 (ENSSSAG00000049615)	ENSSSAG00000120849	ENSSSAG00000025226	ENSSSAG00000024510	ENSSSAG00000007514	ENSSSAG00000007496	ENSSSAG00000007592	adar (ENSSSAG00000043633)	ENSSSAG00000006245	ENSSSAG00000083944	ENSSSAG00000006134	rab13 (ENSSSAG00000092421)	ENSSSAG00000101786 #11	fdps (ENSSSAG00000005943) #16	ENSSSAG00000116239 #17	dap3 (ENSSSAG00000057489) #22	asal (ENSSSAG00000005307)	ENSSSAG00000111661	rnf115a (ENSSSAG00000101171)	polr3c (ENSSSAG00000006875)	ITGA10 (ENSSSAG00000119547)	rabp (ENSSSAG00000045726)	ENSSSAG00000005601	ENSSSAG00000114447	ENSSSAG00000105110	ENSSSAG00000119214	ENSSSAG00000050867	PRPF3 (ENSSSAG00000121892)	ENSSSAG00000113441	ENSSSAG00000005168	ENSSSAG00000050118
River trout	MODERN SPECIES	30	ENSSTUG00000043464	ENSSTUG00000043455	ppp1r35 (ENSSTUG00000043447)	ENSSTUG00000043338	SNX27 (ENSSTUG00000043327)	ENSSTUG00000043307	ENSSTUG00000043285	adar (ENSSTUG00000042135)	KCNN3 (ENSSTUG00000042076)	ENSSTUG00000041934	rab13 (ENSSTUG00000041909)	ENSSTUG00000041868 #11	fdps (ENSSTUG00000041654) #16	ENSSTUG00000041621 #17	ENSSTUG00000041590 #19	dap3 (ENSSTUG00000040915) #22	ENSSTUG00000040875	ENSSTUG00000040763	rnf115a (ENSSTUG00000040508)	polr3c (ENSSTUG00000040136)	ITGA10 (ENSSTUG00000039883)	ENSSTUG00000039843	arnt (ENSSTUG00000039732)	CERS2 (ENSSTUG00000039706)	CELF3 (ENSSTUG00000039686)	CERS2 (ENSSTUG00000039665)	arnt (ENSSTUG00000039545)	ENSSTUG00000039519	crabp2a (ENSSTUG00000039501)	ITGA10 (ENSSTUG00000039092)	polr3c (ENSSTUG00000039006)
Salmo	ANCESTRAL SPECIES	93	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a.o	ENSGT00950000182891.b.a.b.b.a	ENSGT00940000159989.u	ENSGT00530000063335.B.a.a.a.a #11	ENSGT00900000141074.fb #16	ENSGT00950000182904.a.a.a.a.p	ENSGT00390000009491.c.s.a	ENSGT00390000009491.c.s.b	ENSGT00950000182891.b.a.b.a	ENSGT00940000159989.v.b	ENSGT00530000063335.B.a.a.b #11	ENSGT00900000141074.gb #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d #19	ENSGT00390000015248.c.b.b.b #22	ENSGT00970000197937.A	ENSGT00970000197937.B	ENSGT00940000157619.a.a.e	ENSGT01030000234784	ENSGT00940000157585.c	ENSGT01030000234515.a.b.a.a.f.j.a	ENSGT00940000157585.d	ENSGT01030000234515.a.b.a.a.f.j.b	ENSGT00940000154716.gc.a.h	ENSGT00940000161136.g.a	ENSGT00940000159348.l.a	ENSGT00950000183094.a.m.d	ENSGT00390000011497.g	ENSGT00390000018360.a	ENSGT00940000156893.`b.a
River trout	MODERN SPECIES	30	flad1 (ENSSTUG00000048012)	ENSSTUG00000048065	ENSSTUG00000048068	ENSSTUG00000048071	adar (ENSSTUG00000048095)	ENSSTUG00000048222	ENSSTUG00000048226	ENSSTUG00000048241	ENSSTUG00000048256	ENSSTUG00000048269	rab13 (ENSSTUG00000037804)	ENSSTUG00000037830 #11	fdps (ENSSTUG00000037851) #16	ENSSTUG00000037998 #17	ENSSTUG00000038045 #19	dap3 (ENSSTUG00000038112) #22	ENSSTUG00000038717	ENSSTUG00000038736	ENSSTUG00000038761	ENSSTUG00000038985	rnf115a (ENSSTUG00000038988)	polr3c (ENSSTUG00000039006)	ITGA10 (ENSSTUG00000039092)	crabp2a (ENSSTUG00000039501)	ENSSTUG00000039519	arnt (ENSSTUG00000039545)	CERS2 (ENSSTUG00000039665)	CELF3 (ENSSTUG00000039686)	CERS2 (ENSSTUG00000039706)	arnt (ENSSTUG00000039732)	ENSSTUG00000039843
Oncorhynchus	DUPLICATION
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	62	ENSGT00960000187253.a.a	ENSGT00390000000920.i.c.a.a.b	ENSGT00940000167671.e	ENSGT01100000263484.C.b.b.g	ENSGT00950000183212.C.c.b.a	ENSGT00940000164921.a.d.b.b.a	ENSGT00940000157243.m	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b.b.a	ENSGT00390000009491.c.s.b	ENSGT00940000159989.u	ENSGT00530000063335.B.a.a.a.a #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d.e #19	ENSGT00390000015248.c.b.b.c.a #22	ENSGT00390000009464.e.a	ENSGT00390000015248.c.b.b.c.b #22	ENSGT00390000004989.b	ENSGT00390000009464.f	ENSGT00940000157203.c	ENSGT00390000002799.d	ENSGT00940000158423.m.c	ENSGT00940000158423.m.d	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585	ENSGT01030000234515.a.b.a.a.f.i.a	ENSGT00390000010641.i.a.c.b	ENSGT00940000160219	ENSGT00940000154743.A.a.a.k.a
Oncorhynchus_a	ANCESTRAL SPECIES	91	ENSGT00940000159144.C.bb	ENSGT00940000167671.f	ENSGT01100000263484.C.b.b.h	ENSGT01100000263484.C.b.b.g	ENSGT00950000183212.C.c.b.a	ENSGT00940000164921.a.d.b.b.a	ENSGT00940000157243.m	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b.b.a	ENSGT00390000009491.c.s.b	ENSGT00940000159989.u	ENSGT00530000063335.B.a.a.a.a #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d.e #19	ENSGT00390000015248.c.b.b.c.a #22	ENSGT00390000009464.e.a	ENSGT00940000157203.c	ENSGT00390000002799.d.a	ENSGT00940000158423.m.c	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585	ENSGT01030000234515.a.b.a.a.f.i.b.a	ENSGT00940000154716.gc.a.h	ENSGT00940000159348.l.a.a.a	ENSGT00950000183094.a.m.d	ENSGT00390000011497.h	ENSGT00390000018360.a	ENSGT00940000156893.`b.a	ENSGT00940000157471.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	4	ENSOKIG00005043323	ENSOKIG00005043311	ENSOKIG00005043295	SNX27 (ENSOKIG00005043176)	ENSOKIG00005043116	ENSOKIG00005043059	ENSOKIG00005042863	ENSOKIG00005042754	ENSOKIG00005042706	rab13 (ENSOKIG00005042668)	ENSOKIG00005042646 #11	fdps (ENSOKIG00005042522) #16	ENSOKIG00005042498 #17	ENSOKIG00005042490 #17	ENSOKIG00005042469 #19	dap3 (ENSOKIG00005042271) #22	GBA1 (ENSOKIG00005042013)	rnf115a (ENSOKIG00005041962)	polr3c (ENSOKIG00005041919)	ITGA10 (ENSOKIG00005041776)	ENSOKIG00005041755	crabp2a (ENSOKIG00005041738)	ENSOKIG00005041724	arnt (ENSOKIG00005041615)	CERS2 (ENSOKIG00005041548)	CELF3 (ENSOKIG00005041453)	ENSOKIG00005040601	RPRD2 (ENSOKIG00005040488)	ENSOKIG00005040308	CIART (ENSOKIG00005040281)	ENSOKIG00005040259
Coho salmon	MODERN SPECIES	11	ENSOKIG00005000209	s100w (ENSOKIG00005000215)	ENSOKIG00005000232	ENSOKIG00005000243	ppp1r35 (ENSOKIG00005000250)	ENSOKIG00005000255	SNX27 (ENSOKIG00005000293)	ENSOKIG00005000343	adar (ENSOKIG00005000401)	KCNN3 (ENSOKIG00005000486)	rab13 (ENSOKIG00005000497)	ENSOKIG00005000508	ENSOKIG00005000533 #11	fdps (ENSOKIG00005000578) #16	ENSOKIG00005000626 #17	dap3 (ENSOKIG00005000696) #22	dap3 (ENSOKIG00005000789) #22	ENSOKIG00005000806	ENSOKIG00005000810	dap3 (ENSOKIG00005000813) #22	ENSOKIG00005000818	ENSOKIG00005000826	rnf115a (ENSOKIG00005000844)	polr3c (ENSOKIG00005000854)	ITGA10 (ENSOKIG00005000888)	ENSOKIG00005000959	ARNT (ENSOKIG00005001010)	CERS2 (ENSOKIG00005001110)	ENSOKIG00005001113	ENSOKIG00005001119	ENSOKIG00005001124
Rainbow trout	MODERN SPECIES	21	adar (ENSOMYG00000000576)	ENSOMYG00000062663	ENSOMYG00000050041	ENSOMYG00000071073	ENSOMYG00000048243	ENSOMYG00000060699	ENSOMYG00000056247	rab13 (ENSOMYG00000001312)	ENSOMYG00000059856 #11	ENSOMYG00000065192	FDPS (ENSOMYG00000048301) #16	ENSOMYG00000000788 #17	ENSOMYG00000062525	ENSOMYG00000000803 #19	ENSOMYG00000066954	dap3 (ENSOMYG00000001940) #22	ENSOMYG00000001123	dap3 (ENSOMYG00000002465) #22	ENSOMYG00000040268	ENSOMYG00000002525	dap3 (ENSOMYG00000000989) #22	ENSOMYG00000062477	rnf115a (ENSOMYG00000000557)	polr3c (ENSOMYG00000000589)	ITGA10 (ENSOMYG00000056132)	ENSOMYG00000025402	ENSOMYG00000052016	ENSOMYG00000053266	ENSOMYG00000063165	ENSOMYG00000065942	ENSOMYG00000000639
Oncorhynchus	ANCESTRAL SPECIES	62	ENSGT00940000167671.e	ENSGT01100000263484.C.b.b.g	ENSGT00950000183212.C.c.b.a	ENSGT00940000164921.a.d.b.b.a	ENSGT00940000157243.m	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b.b.a	ENSGT00390000009491.c.s.b	ENSGT00940000159989.u	ENSGT00530000063335.B.a.a.a.a #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.d.e #19	ENSGT00390000015248.c.b.b.c.a #22	ENSGT00390000009464.e.a	ENSGT00390000015248.c.b.b.c.b #22	ENSGT00390000004989.b	ENSGT00390000009464.f	ENSGT00940000157203.c	ENSGT00390000002799.d	ENSGT00940000158423.m.c	ENSGT00940000158423.m.d	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585	ENSGT01030000234515.a.b.a.a.f.i.a	ENSGT00390000010641.i.a.c.b	ENSGT00940000160219	ENSGT00940000154743.A.a.a.k.a	ENSGT00390000008859.b.c.i.b #15	ENSGT00940000154743.A.a.a.k.b
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000060699	ENSOMYG00000056247	rab13 (ENSOMYG00000001312)	ENSOMYG00000059856 #11	ENSOMYG00000065192	FDPS (ENSOMYG00000048301) #16	ENSOMYG00000000788 #17	ENSOMYG00000062525	ENSOMYG00000000803 #19	ENSOMYG00000066954	dap3 (ENSOMYG00000001940) #22	ENSOMYG00000001123	dap3 (ENSOMYG00000002465) #22	ENSOMYG00000040268	ENSOMYG00000002525	dap3 (ENSOMYG00000000989) #22	ENSOMYG00000062477	rnf115a (ENSOMYG00000000557)	polr3c (ENSOMYG00000000589)	ITGA10 (ENSOMYG00000056132)	ENSOMYG00000025402	ENSOMYG00000052016	ENSOMYG00000053266	ENSOMYG00000063165	ENSOMYG00000065942	ENSOMYG00000000639	RPRD2 (ENSOMYG00000000645)	ENSOMYG00000000719	CIART (ENSOMYG00000000738)	ENSOMYG00000077358	ENSOMYG00000000802
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000050041	ENSOMYG00000071073	ENSOMYG00000048243	ENSOMYG00000060699	ENSOMYG00000056247	rab13 (ENSOMYG00000001312)	ENSOMYG00000059856 #11	ENSOMYG00000065192	FDPS (ENSOMYG00000048301) #16	ENSOMYG00000000788 #17	ENSOMYG00000062525	ENSOMYG00000000803 #19	ENSOMYG00000066954	dap3 (ENSOMYG00000001940) #22	ENSOMYG00000001123	dap3 (ENSOMYG00000002465) #22	ENSOMYG00000040268	ENSOMYG00000002525	dap3 (ENSOMYG00000000989) #22	ENSOMYG00000062477	rnf115a (ENSOMYG00000000557)	polr3c (ENSOMYG00000000589)	ITGA10 (ENSOMYG00000056132)	ENSOMYG00000025402	ENSOMYG00000052016	ENSOMYG00000053266	ENSOMYG00000063165	ENSOMYG00000065942	ENSOMYG00000000639	RPRD2 (ENSOMYG00000000645)	ENSOMYG00000000719
Oncorhynchus_a	ANCESTRAL SPECIES	338																ENSGT00390000015248.c.b.b.c.b #22	ENSGT00390000004989.b	ENSGT00390000009464.f	ENSGT00390000002799.d.b	ENSGT00940000158423.m.d
Coho salmon	MODERN SPECIES	11	ppp1r35 (ENSOKIG00005000250)	ENSOKIG00005000255	SNX27 (ENSOKIG00005000293)	ENSOKIG00005000343	adar (ENSOKIG00005000401)	KCNN3 (ENSOKIG00005000486)	rab13 (ENSOKIG00005000497)	ENSOKIG00005000508	ENSOKIG00005000533 #11	fdps (ENSOKIG00005000578) #16	ENSOKIG00005000626 #17	dap3 (ENSOKIG00005000696) #22	dap3 (ENSOKIG00005000789) #22	ENSOKIG00005000806	ENSOKIG00005000810	dap3 (ENSOKIG00005000813) #22	ENSOKIG00005000818	ENSOKIG00005000826	rnf115a (ENSOKIG00005000844)	polr3c (ENSOKIG00005000854)	ITGA10 (ENSOKIG00005000888)	ENSOKIG00005000959	ARNT (ENSOKIG00005001010)	CERS2 (ENSOKIG00005001110)	ENSOKIG00005001113	ENSOKIG00005001119	ENSOKIG00005001124	ENSOKIG00005001131	ENSOKIG00005001205	ENSOKIG00005001393	ENSOKIG00005001395
Oncorhynchus	ANCESTRAL SPECIES	510																ENSGT00390000015248.c.b.b.d #22	ENSGT00390000009464.e.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	655																ENSGT00390000015248.c.b.b.d #22	ENSGT00390000009464.e.b.b
Chinook salmon	MODERN SPECIES	135									ENSOTSG00005021200	ENSOTSG00005021203	rab13 (ENSOTSG00005021204)	ENSOTSG00005021229 #11	fdps (ENSOTSG00005021232) #16	ENSOTSG00005021237 #17	ENSOTSG00005021239 #17	dap3 (ENSOTSG00005021261) #22	GBA1 (ENSOTSG00005022495)	rnf115a (ENSOTSG00005022507)	polr3c (ENSOTSG00005022526)	P2RY1 (ENSOTSG00005022528)	rap2b (ENSOTSG00005022529)	gstr (ENSOTSG00005022533)	ENSOTSG00005022538	slc6a18 (ENSOTSG00005022635)	slc6a18 (ENSOTSG00005022637)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000015248.d #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000015248.d #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000015248.d #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000015248.d #22
Coho salmon	MODERN SPECIES	11	s100w (ENSOKIG00005000215)	ENSOKIG00005000232	ENSOKIG00005000243	ppp1r35 (ENSOKIG00005000250)	ENSOKIG00005000255	SNX27 (ENSOKIG00005000293)	ENSOKIG00005000343	adar (ENSOKIG00005000401)	KCNN3 (ENSOKIG00005000486)	rab13 (ENSOKIG00005000497)	ENSOKIG00005000508	ENSOKIG00005000533 #11	fdps (ENSOKIG00005000578) #16	ENSOKIG00005000626 #17	dap3 (ENSOKIG00005000696) #22	dap3 (ENSOKIG00005000789) #22	ENSOKIG00005000806	ENSOKIG00005000810	dap3 (ENSOKIG00005000813) #22	ENSOKIG00005000818	ENSOKIG00005000826	rnf115a (ENSOKIG00005000844)	polr3c (ENSOKIG00005000854)	ITGA10 (ENSOKIG00005000888)	ENSOKIG00005000959	ARNT (ENSOKIG00005001010)	CERS2 (ENSOKIG00005001110)	ENSOKIG00005001113	ENSOKIG00005001119	ENSOKIG00005001124	ENSOKIG00005001131
Northern pike	MODERN SPECIES	19	ENSELUG00000012211	ENSELUG00000012367	SNX27 (ENSELUG00000012452)	ENSELUG00000033729	ENSELUG00000032503	adar (ENSELUG00000012523)	ENSELUG00000012564	ENSELUG00000027573	ENSELUG00000012748	RS27 (ENSELUG00000031053)	rab13 (ENSELUG00000012801)	ENSELUG00000012835 #11	fdps (ENSELUG00000012905) #16	ENSELUG00000012945 #17	ENSELUG00000012966 #19	dap3 (ENSELUG00000000477) #22	ENSELUG00000013061	GBA1 (ENSELUG00000013090)	rnf115a (ENSELUG00000013123)	polr3c (ENSELUG00000013209)	ITGA10 (ENSELUG00000013251)	ENSELUG00000013287	ENSELUG00000013307	arnt (ENSELUG00000013390)	CERS2 (ENSELUG00000013435)	CELF3 (ENSELUG00000013477)	ENSELUG00000013504	ENSELUG00000013552	RPRD2 (ENSELUG00000013579)	prpf3 (ENSELUG00000013624)	ENSELUG00000013661
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00390000007801	ENSGT00940000158021.a #8	ENSGT00390000003552 #7	ENSGT00940000165795	ENSGT00390000000920	ENSGT00950000183212.C	ENSGT00940000164921.a	ENSGT00940000157243	ENSGT00950000182904.a.a.a.a.a	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a #11	ENSGT00900000141074 #16	ENSGT00900000141033.b.b #17	ENSGT00940000156698.a #19	ENSGT00390000015248 #22	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000166610	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585	ENSGT00940000157471.a
Asian bonytongue	MODERN SPECIES	9	efna1b (ENSSFOG00015024930)	slc50a1 (ENSSFOG00015021595)	TRIM46 (ENSSFOG00015021605) #8	krtcap2 (ENSSFOG00015024681) #7	s100a10a (ENSSFOG00015021665)	icn (ENSSFOG00015021668)	snx27b (ENSSFOG00015021679)	ENSSFOG00015021703	adar (ENSSFOG00015021716)	KCNN3 (ENSSFOG00015010219)	ENSSFOG00015021749	ENSSFOG00015021754	ENSSFOG00015021777 #11	fdps (ENSSFOG00015021791) #16	ash1l (ENSSFOG00015021808) #19	dap3 (ENSSFOG00015021822) #22	GBA1 (ENSSFOG00015021833)	rnf115a (ENSSFOG00015021845)	polr3c (ENSSFOG00015021863)	ITGA10 (ENSSFOG00015021906)	crabp2a (ENSSFOG00015021942)	ca14 (ENSSFOG00015021971)	ENSSFOG00015021982	CIART (ENSSFOG00015021990)	prpf3 (ENSSFOG00015022014)	RPRD2 (ENSSFOG00015022056)	ENSSFOG00015022086	ENSSFOG00015022109	celf3a (ENSSFOG00015022130)	CERS2 (ENSSFOG00015030046)	arnt (ENSSFOG00015022161)
P. kingsleyae	MODERN SPECIES	80	krtcap2 (ENSPKIG00000014039) #7	TRIM46 (ENSPKIG00000014081) #8	s100a10b (ENSPKIG00000014135)	icn (ENSPKIG00000014153)	s100w (ENSPKIG00000014179)	snx27b (ENSPKIG00000014279)	ENSPKIG00000014375	adar (ENSPKIG00000014435)	KCNN3 (ENSPKIG00000014466)	ENSPKIG00000014499	ENSPKIG00000014528	ENSPKIG00000014582 #11	fdps (ENSPKIG00000014612) #16	ENSPKIG00000014636 #17	ash1l (ENSPKIG00000014675) #19	dap3 (ENSPKIG00000014766) #22	GBA1 (ENSPKIG00000014818)	rnf115a (ENSPKIG00000014855)	polr3c (ENSPKIG00000014883)	ITGA10 (ENSPKIG00000014936)	crabp2b (ENSPKIG00000015001)	ENSPKIG00000015024	ENSPKIG00000015039
Spotted gar	MODERN SPECIES	663	ENSLOCG00000017676	ENSLOCG00000006155	ENSLOCG00000006172	ENSLOCG00000017677	ENSLOCG00000006188	ENSLOCG00000006203	ENSLOCG00000006220	ENSLOCG00000006232	ENSLOCG00000006250	ENSLOCG00000006268	khdc4 (ENSLOCG00000006286) #26	ENTREP3 (ENSLOCG00000006299) #11	ENSLOCG00000006319 #17	ENSLOCG00000006338	ITGA10 (ENSLOCG00000006355)	dap3 (ENSLOCG00000006373) #22	ENSLOCG00000006385	polr3c (ENSLOCG00000006400)	crabp2b (ENSLOCG00000006421)	ca14 (ENSLOCG00000006442)	ENSLOCG00000006450	ENSLOCG00000006471	celf3a (ENSLOCG00000006518)	cers2a (ENSLOCG00000006535)	ENSLOCG00000006560	ENSLOCG00000006575	ARNT (ENSLOCG00000006585)	clk2a (ENSLOCG00000006600) #13	pklr (ENSLOCG00000006611) #15	ENSLOCG00000006639	ENSLOCG00000006658
Reedfish	MODERN SPECIES	10	arhgef1a (ENSECRG00000000678) #28	GBA1 (ENSECRG00000000716)	ENSECRG00000000739 #11	scamp3 (ENSECRG00000000775) #12	crabp2b (ENSECRG00000000813)	slc25a44b (ENSECRG00000000835) #37	ENSECRG00000000856	ENSECRG00000000886	ENSECRG00000000918	ENSECRG00000001124	pklr (ENSECRG00000001821) #15	ENSECRG00000001870	fdps (ENSECRG00000001906) #16	ENSECRG00000001946 #17	ash1l (ENSECRG00000001983) #19	dap3 (ENSECRG00000002149) #22	ARNT (ENSECRG00000003366)	ENSECRG00000007573	setdb1b (ENSECRG00000007597)	cers2a (ENSECRG00000007629)	celf3a (ENSECRG00000007662)	ENSECRG00000007687	ENSECRG00000007723	ENSECRG00000007751	ENSECRG00000007761	ENSECRG00000007771	ENSECRG00000007880	ENSECRG00000008281	ENSECRG00000008315 #23	smad10a (ENSECRG00000008339)	snapin (ENSECRG00000008354)
Elephant shark	MODERN SPECIES	2187															ENSCMIG00000001338 #19	dap3 (ENSCMIG00000001344) #22	ENSCMIG00000001350 #20