Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182913.B #22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000182913.B #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182913.B #22
Gnathostomata	ANCESTRAL SPECIES	181							ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000158196	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a
Euteleostomi	ANCESTRAL SPECIES	61						ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209
Sarcopterygii	ANCESTRAL SPECIES	88						ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209
Amniota	ANCESTRAL SPECIES	9	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Mammalia	ANCESTRAL SPECIES	5	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00980000202328	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Theria	ANCESTRAL SPECIES	3	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00980000202328	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Eutheria	ANCESTRAL SPECIES		ENSGT00940000167450	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT01010000228719	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT01010000228719	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000159131	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Glires	ANCESTRAL SPECIES		ENSGT00940000159131	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Rodentia	ANCESTRAL SPECIES		ENSGT00940000159131	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Rodentia_B	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Muroidea	ANCESTRAL SPECIES	6	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Upper Galilee mountains blind mole rat	MODERN SPECIES	1442														ENSNGAG00000018457 #20	Depdc1a (ENSNGAG00000015975) #21	Rpe65 (ENSNGAG00000013981) #22	Wls (ENSNGAG00000013053) #23
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Golden Hamster	MODERN SPECIES	858															Depdc1a (ENSMAUG00000008368) #21	Rpe65 (ENSMAUG00000009524) #22	Wls (ENSMAUG00000011802) #23
Chinese hamster chok1gshd	MODERN SPECIES	219	ENSCGRG00001021548	Tnni3k (ENSCGRG00001019929)	Fpgt (ENSCGRG00001018999)	ENSCGRG00001018112	ENSCGRG00001009246	Negr1 (ENSCGRG00001006889)	ENSCGRG00001019737	Ptger3 (ENSCGRG00001018046)	Cth (ENSCGRG00001017639)	Ankrd13c (ENSCGRG00001014243)	Srsf11 (ENSCGRG00001012043)	Lrrc40 (ENSCGRG00001008246)	Lrrc7 (ENSCGRG00001014135)	ENSCGRG00001016303	Depdc1a (ENSCGRG00001021261) #21	Rpe65 (ENSCGRG00001003298) #22	Wls (ENSCGRG00001000949) #23
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Northern American deer mouse	MODERN SPECIES	23														Depdc1a (ENSPEMG00000014449) #21	ENSPEMG00000026035	Rpe65 (ENSPEMG00000019476) #22	Wls (ENSPEMG00000010125) #23
Prairie vole	MODERN SPECIES	8	Tnni3k (ENSMOCG00000022213)	Fpgt (ENSMOCG00000017616)	ENSMOCG00000013522	Negr1 (ENSMOCG00000016825)	Zranb2 (ENSMOCG00000018818)	Ptger3 (ENSMOCG00000008513)	ENSMOCG00000006415	ENSMOCG00000021537	Cth (ENSMOCG00000016949)	ENSMOCG00000002252	Ankrd13c (ENSMOCG00000022501)	Srsf11 (ENSMOCG00000011388)	Lrrc40 (ENSMOCG00000021998)	Lrrc7 (ENSMOCG00000017587)	Depdc1a (ENSMOCG00000021306) #21	Rpe65 (ENSMOCG00000004259) #22	Wls (ENSMOCG00000008906) #23	ENSMOCG00000009024	ENSMOCG00000014236	Prkacb (ENSMOCG00000001336)	Samd13 (ENSMOCG00000010216)	Uox (ENSMOCG00000016256)	Dnase2b (ENSMOCG00000000354)	Rpf1 (ENSMOCG00000018274)	ENSMOCG00000005222	ENSMOCG00000000334	ENSMOCG00000022893	Ctbs (ENSMOCG00000020087)	Ssx2ip (ENSMOCG00000014448)	Lpar3 (ENSMOCG00000012201)	Mcoln2 (ENSMOCG00000005258)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000166371	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Mus	ANCESTRAL SPECIES	7	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Ryukyu mouse	MODERN SPECIES	12	Cryz (MGP_CAROLIEiJ_G0025756)	Erich3 (MGP_CAROLIEiJ_G0025757)	MGP_CAROLIEiJ_G0025758	Fpgt (MGP_CAROLIEiJ_G0025759)	Lrriq3 (MGP_CAROLIEiJ_G0025760)	MGP_CAROLIEiJ_G0025761	Negr1 (MGP_CAROLIEiJ_G0025762)	Zranb2 (MGP_CAROLIEiJ_G0025763)	Ptger3 (MGP_CAROLIEiJ_G0025764)	Cth (MGP_CAROLIEiJ_G0025765)	Ankrd13c (MGP_CAROLIEiJ_G0025766)	Srsf11 (MGP_CAROLIEiJ_G0025767)	Lrrc40 (MGP_CAROLIEiJ_G0025768)	Lrrc7 (MGP_CAROLIEiJ_G0025769)	Depdc1a (MGP_CAROLIEiJ_G0025770) #21	Rpe65 (MGP_CAROLIEiJ_G0025771) #22	Wls (MGP_CAROLIEiJ_G0025772) #23	MGP_CAROLIEiJ_G0025773
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23
Mouse	MODERN SPECIES	12	Tyw3 (ENSMUSG00000047583)	Cryz (ENSMUSG00000028199)	Erich3 (ENSMUSG00000078161)	Tnni3k (ENSMUSG00000040086)	Fpgt (ENSMUSG00000053870)	Lrriq3 (ENSMUSG00000028182)	Negr1 (ENSMUSG00000040037)	Zranb2 (ENSMUSG00000028180)	Ptger3 (ENSMUSG00000040016)	Cth (ENSMUSG00000028179)	Ankrd13c (ENSMUSG00000039988)	Srsf11 (ENSMUSG00000055436)	Lrrc40 (ENSMUSG00000063052)	Lrrc7 (ENSMUSG00000028176)	Depdc1a (ENSMUSG00000028175) #21	Rpe65 (ENSMUSG00000028174) #22	Wls (ENSMUSG00000028173) #23
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22
Steppe mouse	MODERN SPECIES	2731														ENSMSIG00000031993	Depdc1a (ENSMSIG00000031994) #21	Rpe65 (ENSMSIG00000031995) #22
spretus	MODERN SPECIES	12	Tyw3 (MGP_SPRETEiJ_G0026708)	Cryz (MGP_SPRETEiJ_G0026709)	Erich3 (MGP_SPRETEiJ_G0026710)	Tnni3k (MGP_SPRETEiJ_G0026711)	Fpgt (MGP_SPRETEiJ_G0026712)	Lrriq3 (MGP_SPRETEiJ_G0026713)	Negr1 (MGP_SPRETEiJ_G0026714)	Zranb2 (MGP_SPRETEiJ_G0026715)	Ptger3 (MGP_SPRETEiJ_G0026716)	Cth (MGP_SPRETEiJ_G0026717)	Ankrd13c (MGP_SPRETEiJ_G0026718)	Srsf11 (MGP_SPRETEiJ_G0026719)	Lrrc40 (MGP_SPRETEiJ_G0026720)	Lrrc7 (MGP_SPRETEiJ_G0026721)	Depdc1a (MGP_SPRETEiJ_G0026722) #21	MGP_SPRETEiJ_G0026723 #22	Wls (MGP_SPRETEiJ_G0026724) #23
Shrew mouse	MODERN SPECIES	17	Tyw3 (MGP_PahariEiJ_G0027206)	Cryz (MGP_PahariEiJ_G0027207)	Erich3 (MGP_PahariEiJ_G0027208)	Tnni3k (MGP_PahariEiJ_G0027209)	Fpgt (MGP_PahariEiJ_G0027210)	Lrriq3 (MGP_PahariEiJ_G0027211)	Negr1 (MGP_PahariEiJ_G0027212)	Zranb2 (MGP_PahariEiJ_G0027213)	Ptger3 (MGP_PahariEiJ_G0027214)	Cth (MGP_PahariEiJ_G0027215)	Ankrd13c (MGP_PahariEiJ_G0027216)	Srsf11 (MGP_PahariEiJ_G0027217)	Lrrc40 (MGP_PahariEiJ_G0027218)	Lrrc7 (MGP_PahariEiJ_G0027219)	Depdc1a (MGP_PahariEiJ_G0027220) #21	Rpe65 (MGP_PahariEiJ_G0027221) #22	Wls (MGP_PahariEiJ_G0027222) #23
Rat	MODERN SPECIES	11	Lrrc53 (ENSRNOG00000068038)	Fpgt (ENSRNOG00000009548)	Lrriq3 (ENSRNOG00000009555)	Negr1 (ENSRNOG00000021410)	Zranb2 (ENSRNOG00000009990)	Ptger3 (ENSRNOG00000010325)	ENSRNOG00000063023	AABR07048397.1 (ENSRNOG00000038905)	AABR07013931.2 (ENSRNOG00000053997)	Cth (ENSRNOG00000010658)	Ankrd13c (ENSRNOG00000011340)	Srsf11 (ENSRNOG00000029592)	Lrrc40 (ENSRNOG00000011555)	Lrrc7 (ENSRNOG00000011980)	Depdc1 (ENSRNOG00000009503) #21	Rpe65 (ENSRNOG00000009582) #22	Wls (ENSRNOG00000036816) #23
Lesser Egyptian jerboa	MODERN SPECIES	205		Negr1 (ENSJJAG00000023353)	ENSJJAG00000023535	ENSJJAG00000023929	Ptger3 (ENSJJAG00000024154)	ENSJJAG00000012748	ENSJJAG00000016527	Ankrd13c (ENSJJAG00000016909)	Srsf11 (ENSJJAG00000017238)	Lrrc40 (ENSJJAG00000018176)	ENSJJAG00000018985	ENSJJAG00000020945	ENSJJAG00000012643	ENSJJAG00000022639	Depdc1a (ENSJJAG00000000124) #21	Rpe65 (ENSJJAG00000006687) #22	ENSJJAG00000010529	ENSJJAG00000012707	Wls (ENSJJAG00000010758) #23
Kangaroo rat	MODERN SPECIES	370						ENSDORG00000027114	ENSDORG00000024342	Negr1 (ENSDORG00000007902)	Zranb2 (ENSDORG00000016348)	Ptger3 (ENSDORG00000016347)	Cth (ENSDORG00000009184)	Ankrd13c (ENSDORG00000000672)	Srsf11 (ENSDORG00000000669)	Lrrc40 (ENSDORG00000000667)	Lrrc7 (ENSDORG00000000664)	Rpe65 (ENSDORG00000004476) #22	Wls (ENSDORG00000007449) #23	Gng12 (ENSDORG00000027722)	Gadd45a (ENSDORG00000011668)	ENSDORG00000023240	Serbp1 (ENSDORG00000002189)	Slc35d1 (ENSDORG00000002120)	Mier1 (ENSDORG00000002114)	Sgip1 (ENSDORG00000001885)	Pde4b (ENSDORG00000010712)	Leprot (ENSDORG00000005691)	Dnajc6 (ENSDORG00000005685)	Ak4 (ENSDORG00000023966)	Jak1 (ENSDORG00000013462)	Raver2 (ENSDORG00000002498)	Cachd1 (ENSDORG00000011104)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Marmotini	ANCESTRAL SPECIES		ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.w.a	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Marmotini_b	ANCESTRAL SPECIES	105	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.w.a	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00940000154222.d.b.d.b.n	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Squirrel	MODERN SPECIES	191				NEGR1 (ENSSTOG00000010905)	ENSSTOG00000000890	PTGER3 (ENSSTOG00000000886)	CTH (ENSSTOG00000000202)	ENSSTOG00000034931	ENSSTOG00000032029	ANKRD13C (ENSSTOG00000008687)	SRSF11 (ENSSTOG00000008675)	LRRC40 (ENSSTOG00000008649)	LRRC7 (ENSSTOG00000008618)	ENSSTOG00000032513	DEPDC1 (ENSSTOG00000001673) #21	RPE65 (ENSSTOG00000001659) #22	WLS (ENSSTOG00000008145) #23	GNG12 (ENSSTOG00000004502)	GADD45A (ENSSTOG00000024503)	SERBP1 (ENSSTOG00000026587)	ENSSTOG00000016126	IL23R (ENSSTOG00000005238)	SLC35D1 (ENSSTOG00000010086)	MIER1 (ENSSTOG00000011394)	ENSSTOG00000011383	ENSSTOG00000031556	INSL5 (ENSSTOG00000016330)	ENSSTOG00000016329	SGIP1 (ENSSTOG00000016322)	PDE4B (ENSSTOG00000028938)	LEPR (ENSSTOG00000022005)
Arctic ground squirrel	MODERN SPECIES	14	ENSUPAG00010014716	TNNI3K (ENSUPAG00010014659)	FPGT (ENSUPAG00010014645)	ENSUPAG00010014638	NEGR1 (ENSUPAG00010014624)	ZRANB2 (ENSUPAG00010014577)	ENSUPAG00010014568	ENSUPAG00010014565	CTH (ENSUPAG00010014528)	ENSUPAG00010014512	ANKRD13C (ENSUPAG00010014475)	SRSF11 (ENSUPAG00010014456)	LRRC40 (ENSUPAG00010014436)	LRRC7 (ENSUPAG00010014242)	DEPDC1 (ENSUPAG00010014188) #21	RPE65 (ENSUPAG00010014157) #22	WLS (ENSUPAG00010014142) #23	ENSUPAG00010014133	GNG12 (ENSUPAG00010014121)	GADD45A (ENSUPAG00010014109)	SERBP1 (ENSUPAG00010013929)	IL12RB2 (ENSUPAG00010013900)	IL23R (ENSUPAG00010013875)	ENSUPAG00010013858	SLC35D1 (ENSUPAG00010013821)	MIER1 (ENSUPAG00010013780)	ENSUPAG00010013759	ENSUPAG00010013745	INSL5 (ENSUPAG00010013736)	DYNLT5 (ENSUPAG00010013722)	SGIP1 (ENSUPAG00010013307)
Alpin marmot	MODERN SPECIES	27	TNNI3K (ENSMMMG00000000454)	FPGT (ENSMMMG00000000423)	ENSMMMG00000000411	NEGR1 (ENSMMMG00000000368)	ZRANB2 (ENSMMMG00000000288)	PTGER3 (ENSMMMG00000000262)	ENSMMMG00000000250	ENSMMMG00000000236	ENSMMMG00000000219	CTH (ENSMMMG00000000175)	ANKRD13C (ENSMMMG00000000111)	SRSF11 (ENSMMMG00000018369)	LRRC40 (ENSMMMG00000018339)	LRRC7 (ENSMMMG00000018169)	DEPDC1 (ENSMMMG00000018082) #21	RPE65 (ENSMMMG00000018066) #22	WLS (ENSMMMG00000018053) #23	DIRAS3 (ENSMMMG00000018034)	GNG12 (ENSMMMG00000018008)	GADD45A (ENSMMMG00000017997)	SERBP1 (ENSMMMG00000017849)	ENSMMMG00000017835	PTGER4 (ENSMMMG00000017826)	TTC33 (ENSMMMG00000017819)	PRKAA1 (ENSMMMG00000017787)	RPL37 (ENSMMMG00000017779)	CARD6 (ENSMMMG00000017776)	C7 (ENSMMMG00000017398)	ENSMMMG00000017396	MROH2B (ENSMMMG00000017369)	C6 (ENSMMMG00000017358)
Eurasian red squirrel	MODERN SPECIES		NEGR1 (ENSSVLG00005017955)	ZRANB2 (ENSSVLG00005017892)	PTGER3 (ENSSVLG00005017732)	ENSSVLG00005017682	ENSSVLG00005017661	ENSSVLG00005017607	ENSSVLG00005017591	CTH (ENSSVLG00005017161)	ENSSVLG00005017080	ANKRD13C (ENSSVLG00005016963)	SRSF11 (ENSSVLG00005016775)	ENSSVLG00005016746	ENSSVLG00005016639	LRRC7 (ENSSVLG00005016053)	DEPDC1 (ENSSVLG00005015797) #21	RPE65 (ENSSVLG00005015624) #22	WLS (ENSSVLG00005015479) #23	DIRAS3 (ENSSVLG00005015456)	GNG12 (ENSSVLG00005015424)	GADD45A (ENSSVLG00005015298)	SERBP1 (ENSSVLG00005015184)	IL12RB2 (ENSSVLG00005014564)	IL23R (ENSSVLG00005014294)	ENSSVLG00005014261	C1orf141 (ENSSVLG00005014047)	ENSSVLG00005013884	ENSSVLG00005013815	ENSSVLG00005013677	DNAI4 (ENSSVLG00005013339)	INSL5 (ENSSVLG00005013170)	DYNLT5 (ENSSVLG00005013092)
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209
Naked mole-rat female	MODERN SPECIES	10	FPGT (ENSHGLG00000009086)	ENSHGLG00000004255	NEGR1 (ENSHGLG00000004482)	ZRANB2 (ENSHGLG00000004819)	PTGER3 (ENSHGLG00000005622)	CTH (ENSHGLG00000006660)	ENSHGLG00000037598	ANKRD13C (ENSHGLG00000007705)	SRSF11 (ENSHGLG00000008682)	LRRC40 (ENSHGLG00000005148)	ENSHGLG00000005980	ENSHGLG00000033465	ENSHGLG00000032766	ENSHGLG00000044082	DEPDC1 (ENSHGLG00000010030) #21	RPE65 (ENSHGLG00000010215) #22	WLS (ENSHGLG00000004340) #23	GNG12 (ENSHGLG00000004433)	GADD45A (ENSHGLG00000004470)	ENSHGLG00000047078	IL12RB2 (ENSHGLG00000005676)	IL23R (ENSHGLG00000006341)	ENSHGLG00000050506	SLC35D1 (ENSHGLG00000007417)	MIER1 (ENSHGLG00000008072)	DNAI4 (ENSHGLG00000008391)	ENSHGLG00000037538	INSL5 (ENSHGLG00000038941)	DYNLT5 (ENSHGLG00000011534)	SGIP1 (ENSHGLG00000012915)	PDE4B (ENSHGLG00000015509)
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.cb	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000235815	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209
Long-tailed chinchilla	MODERN SPECIES	130	TYW3 (ENSCLAG00000004370)	CRYZ (ENSCLAG00000004555)	ERICH3 (ENSCLAG00000005724)	ENSCLAG00000005943	FPGT (ENSCLAG00000005973)	LRRIQ3 (ENSCLAG00000006032)	NEGR1 (ENSCLAG00000007364)	ZRANB2 (ENSCLAG00000004404)	PTGER3 (ENSCLAG00000005105)	CTH (ENSCLAG00000005393)	ANKRD13C (ENSCLAG00000011373)	SRSF11 (ENSCLAG00000013309)	LRRC40 (ENSCLAG00000014047)	LRRC7 (ENSCLAG00000008949)	DEPDC1 (ENSCLAG00000006344) #21	RPE65 (ENSCLAG00000006679) #22	WLS (ENSCLAG00000006873) #23	GNG12 (ENSCLAG00000007040)	GADD45A (ENSCLAG00000007279)	SERBP1 (ENSCLAG00000007459)	ENSCLAG00000008496	IL23R (ENSCLAG00000008594)	ENSCLAG00000005867	SLC35D1 (ENSCLAG00000006519)	MIER1 (ENSCLAG00000006851)	ENSCLAG00000007749	ENSCLAG00000004621	ENSCLAG00000004647	SGIP1 (ENSCLAG00000005269)	PDE4B (ENSCLAG00000006409)	LEPR (ENSCLAG00000016236)
Degu	MODERN SPECIES	98	ENSODEG00000006615	ENSODEG00000006432	ENSODEG00000005954	FPGT (ENSODEG00000006370)	ENSODEG00000005870	NEGR1 (ENSODEG00000005896)	ENSODEG00000006491	PTGER3 (ENSODEG00000005473)	CTH (ENSODEG00000006417)	ANKRD13C (ENSODEG00000005392)	SRSF11 (ENSODEG00000006289)	LRRC40 (ENSODEG00000005601)	LRRC7 (ENSODEG00000006670)	ENSODEG00000005510	DEPDC1 (ENSODEG00000005384) #21	RPE65 (ENSODEG00000005046) #22	WLS (ENSODEG00000006216) #23	GNG12 (ENSODEG00000005519)	GADD45A (ENSODEG00000007377)	ENSODEG00000005146	ENSODEG00000006835	ENSODEG00000006396	SLC35D1 (ENSODEG00000005492)	ENSODEG00000004802	DNAI4 (ENSODEG00000005891)	ENSODEG00000005348	DYNLT5 (ENSODEG00000006520)	SGIP1 (ENSODEG00000005002)	ENSODEG00000005863	PDE4B (ENSODEG00000004887)	LEPR (ENSODEG00000005568)
Guinea pig	MODERN SPECIES	2	ENSCPOG00000034855	CRYZ (ENSCPOG00000006521)	ENSCPOG00000038970	FPGT (ENSCPOG00000006498)	ENSCPOG00000012014	NEGR1 (ENSCPOG00000004501)	ZRANB2 (ENSCPOG00000007829)	PTGER3 (ENSCPOG00000002783)	CTH (ENSCPOG00000020205)	ANKRD13C (ENSCPOG00000009559)	SRSF11 (ENSCPOG00000009554)	LRRC40 (ENSCPOG00000009536)	LRRC7 (ENSCPOG00000009529)	ENSCPOG00000024331	DEPDC1 (ENSCPOG00000013839) #21	RPE65 (ENSCPOG00000013831) #22	WLS (ENSCPOG00000012423) #23	GNG12 (ENSCPOG00000036301)	GADD45A (ENSCPOG00000005810)	SERBP1 (ENSCPOG00000020069)	ENSCPOG00000027017	SLC35D1 (ENSCPOG00000030853)	MIER1 (ENSCPOG00000014165)	ENSCPOG00000014157	INSL5 (ENSCPOG00000011735)	DYNLT5 (ENSCPOG00000014156)	SGIP1 (ENSCPOG00000012044)	PDE4B (ENSCPOG00000011698)	LEPR (ENSCPOG00000015030)	LEPROT (ENSCPOG00000033712)	DNAJC6 (ENSCPOG00000008733)
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00900000141068.t	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Rabbit	MODERN SPECIES	4	ENSOCUG00000003011	LRRIQ3 (ENSOCUG00000027876)	ENSOCUG00000024057	ENSOCUG00000031440	NEGR1 (ENSOCUG00000008285)	ZRANB2 (ENSOCUG00000004640)	PTGER3 (ENSOCUG00000004633)	ENSOCUG00000027801	CTH (ENSOCUG00000007526)	ANKRD13C (ENSOCUG00000002007)	ENSOCUG00000002001	LRRC40 (ENSOCUG00000001994)	ENSOCUG00000001980	ENSOCUG00000029470	ENSOCUG00000013658 #21	RPE65 (ENSOCUG00000013644) #22	WLS (ENSOCUG00000000532) #23	ENSOCUG00000024881	GNG12 (ENSOCUG00000024324)	GADD45A (ENSOCUG00000008954)	SERBP1 (ENSOCUG00000008946)	IL12RB2 (ENSOCUG00000008934)	ENSOCUG00000008927	IL23R (ENSOCUG00000008918)	ENSOCUG00000035679	ENSOCUG00000037276	C1orf141 (ENSOCUG00000012268)	SLC35D1 (ENSOCUG00000015456)	MIER1 (ENSOCUG00000015438)	DNAI4 (ENSOCUG00000021747)	ENSOCUG00000034617
Pika	MODERN SPECIES	469															DEPDC1 (ENSOPRG00000009379) #21	RPE65 (ENSOPRG00000009354) #22
Tree shrew	MODERN SPECIES	764																RPE65 (ENSTBEG00000003505) #22
Primates	ANCESTRAL SPECIES	4	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00910000148470	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.m.a	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.m.a	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000154430.e.a	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.m.a	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000154430.e.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Olive baboon	MODERN SPECIES		LRRC53 (ENSPANG00000023960)	TNNI3K (ENSPANG00000022216)	LRRIQ3 (ENSPANG00000017176)	ENSPANG00000043063	ENSPANG00000049584	NEGR1 (ENSPANG00000033595)	ZRANB2 (ENSPANG00000013398)	PTGER3 (ENSPANG00000006005)	ENSPANG00000044968	CTH (ENSPANG00000009664)	ANKRD13C (ENSPANG00000022425)	SRSF11 (ENSPANG00000018677)	LRRC40 (ENSPANG00000004753)	LRRC7 (ENSPANG00000012864)	DEPDC1 (ENSPANG00000020338) #21	RPE65 (ENSPANG00000007871) #22	WLS (ENSPANG00000022426) #23	DIRAS3 (ENSPANG00000038255)	ENSPANG00000039979	GNG12 (ENSPANG00000050175)	GADD45A (ENSPANG00000005666)	SERBP1 (ENSPANG00000005883)	IL12RB2 (ENSPANG00000025662)	IL23R (ENSPANG00000000873)	ENSPANG00000049986	ENSPANG00000044457	C1orf141 (ENSPANG00000010612)	SLC35D1 (ENSPANG00000010289)	MIER1 (ENSPANG00000022218)	DNAI4 (ENSPANG00000005715)	INSL5 (ENSPANG00000023469)
Cercopithecinae_d	ANCESTRAL SPECIES	19	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.m.a	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000165544	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000154430.e.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Sooty mangabey	MODERN SPECIES	238	FPGT (ENSCATG00000044819)	LRRIQ3 (ENSCATG00000035446)	NEGR1 (ENSCATG00000044090)	ZRANB2 (ENSCATG00000025001)	PTGER3 (ENSCATG00000041781)	ENSCATG00000040340	CTH (ENSCATG00000043574)	ENSCATG00000031068	ENSCATG00000035218	ANKRD13C (ENSCATG00000014535)	SRSF11 (ENSCATG00000043613)	LRRC40 (ENSCATG00000004246)	LRRC7 (ENSCATG00000042304)	ENSCATG00000039264	DEPDC1 (ENSCATG00000004444) #21	RPE65 (ENSCATG00000021512) #22	WLS (ENSCATG00000002594) #23	ENSCATG00000040157	GNG12 (ENSCATG00000012440)	GADD45A (ENSCATG00000040913)	SERBP1 (ENSCATG00000041393)	IL12RB2 (ENSCATG00000018629)	ENSCATG00000030460	ENSCATG00000031536	IL23R (ENSCATG00000043155)	C1orf141 (ENSCATG00000030751)	SLC35D1 (ENSCATG00000044973)	MIER1 (ENSCATG00000040832)	DNAI4 (ENSCATG00000039576)	INSL5 (ENSCATG00000029366)	DYNLT5 (ENSCATG00000010584)
Drill	MODERN SPECIES	1151															DEPDC1 (ENSMLEG00000033775) #21	RPE65 (ENSMLEG00000031729) #22	ENSMLEG00000029003	WLS (ENSMLEG00000038942) #23	GNG12 (ENSMLEG00000038713)	GADD45A (ENSMLEG00000033790)	SERBP1 (ENSMLEG00000035841)	IL12RB2 (ENSMLEG00000035295)	IL23R (ENSMLEG00000036045)	C1orf141 (ENSMLEG00000032420)	SLC35D1 (ENSMLEG00000024346)	MIER1 (ENSMLEG00000041550)	DNAI4 (ENSMLEG00000042641)	INSL5 (ENSMLEG00000030103)	DYNLT5 (ENSMLEG00000039935)	SGIP1 (ENSMLEG00000023612)	PDE4B (ENSMLEG00000039969)
Macaca	ANCESTRAL SPECIES		ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.m.a	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00390000016438.l	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000154430.e.a	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000161095	ENSGT00940000159131	ENSGT00390000004404	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.a.b.a.a.a.a	ENSGT00940000159289	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.b.a.a.a.a.a.a.a.b	ENSGT00730000111078.n	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00390000016438.l	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT01100000263493.a.a.b.b.b.d.a.a	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Rhesus	MODERN SPECIES		ENSMMUG00000065181	ENSMMUG00000052364	NEGR1 (ENSMMUG00000017314)	ENSMMUG00000059833	ENSMMUG00000049603	ZRANB2 (ENSMMUG00000017312)	PTGER3 (ENSMMUG00000017309)	CTH (ENSMMUG00000019326)	ANKRD13C (ENSMMUG00000013853)	SRSF11 (ENSMMUG00000013852)	LRRC40 (ENSMMUG00000021921)	ENSMMUG00000063902	LRRC7 (ENSMMUG00000021917)	ENSMMUG00000007527	DEPDC1 (ENSMMUG00000017766) #21	RPE65 (ENSMMUG00000002752) #22	WLS (ENSMMUG00000022908) #23	DIRAS3 (ENSMMUG00000013333)	GNG12 (ENSMMUG00000014807)	GADD45A (ENSMMUG00000056103)	SERBP1 (ENSMMUG00000000652)	ENSMMUG00000054458	IL12RB2 (ENSMMUG00000000651)	ENSMMUG00000060609	IL23R (ENSMMUG00000000648)	C1H1orf141 (ENSMMUG00000000647)	SLC35D1 (ENSMMUG00000000645)	MIER1 (ENSMMUG00000000643)	DNAI4 (ENSMMUG00000000641)	INSL5 (ENSMMUG00000051044)	DYNLT5 (ENSMMUG00000000638)
Crab-eating macaque	MODERN SPECIES		LRRC53 (ENSMFAG00000038246)	LRRIQ3 (ENSMFAG00000042954)	ENSMFAG00000061527	NEGR1 (ENSMFAG00000034696)	ENSMFAG00000065809	ENSMFAG00000003326	PTGER3 (ENSMFAG00000040520)	CTH (ENSMFAG00000040329)	ANKRD13C (ENSMFAG00000042830)	ENSMFAG00000058749	SRSF11 (ENSMFAG00000043405)	LRRC40 (ENSMFAG00000028307)	LRRC7 (ENSMFAG00000031304)	ENSMFAG00000036815	DEPDC1 (ENSMFAG00000036197) #21	RPE65 (ENSMFAG00000043407) #22	WLS (ENSMFAG00000030065) #23	DIRAS3 (ENSMFAG00000059613)	GADD45A (ENSMFAG00000043026)	SERBP1 (ENSMFAG00000036635)	IL12RB2 (ENSMFAG00000044595)	ENSMFAG00000064282	IL23R (ENSMFAG00000003679)	C1orf141 (ENSMFAG00000044140)	SLC35D1 (ENSMFAG00000025789)	ENSMFAG00000048772	MIER1 (ENSMFAG00000043942)	DNAI4 (ENSMFAG00000033193)	INSL5 (ENSMFAG00000003313)	DYNLT5 (ENSMFAG00000044785)	SGIP1 (ENSMFAG00000045356)
Pig-tailed macaque	MODERN SPECIES	264		ENSMNEG00000039308	ENSMNEG00000042080	PTGER3 (ENSMNEG00000005617)	ENSMNEG00000027941	CTH (ENSMNEG00000011769)	ENSMNEG00000031546	ENSMNEG00000031248	ENSMNEG00000030923	ANKRD13C (ENSMNEG00000040599)	SRSF11 (ENSMNEG00000029428)	LRRC40 (ENSMNEG00000042660)	LRRC7 (ENSMNEG00000040393)	ENSMNEG00000015469	DEPDC1 (ENSMNEG00000039427) #21	RPE65 (ENSMNEG00000034651) #22	ENSMNEG00000039124	WLS (ENSMNEG00000031027) #23
Vervet Monkey	MODERN SPECIES	12	TNNI3K (ENSCSAG00000001384)	LRRC53 (ENSCSAG00000001383)	FPGT (ENSCSAG00000001382)	ENSCSAG00000001381	NEGR1 (ENSCSAG00000001380)	ENSCSAG00000001379	PTGER3 (ENSCSAG00000001378)	ENSCSAG00000000152	CTH (ENSCSAG00000001377)	ANKRD13C (ENSCSAG00000001376)	SRSF11 (ENSCSAG00000001375)	LRRC40 (ENSCSAG00000001374)	LRRC7 (ENSCSAG00000001373)	ENSCSAG00000001372	DEPDC1 (ENSCSAG00000001371) #21	RPE65 (ENSCSAG00000001370) #22	WLS (ENSCSAG00000001369) #23	DIRAS3 (ENSCSAG00000000151)	GNG12 (ENSCSAG00000001367)	GADD45A (ENSCSAG00000001366)	SERBP1 (ENSCSAG00000001365)	IL12RB2 (ENSCSAG00000001364)	IL23R (ENSCSAG00000001363)	C1orf141 (ENSCSAG00000001362)	SLC35D1 (ENSCSAG00000001361)	MIER1 (ENSCSAG00000001360)	DNAI4 (ENSCSAG00000001359)	INSL5 (ENSCSAG00000001358)	DYNLT5 (ENSCSAG00000001357)	SGIP1 (ENSCSAG00000001356)	PDE4B (ENSCSAG00000001355)
Rhinopithecus	ANCESTRAL SPECIES	10															ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000154430.e.a	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000154095.b.a	ENSGT00940000154205.h	ENSGT00940000156321	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209
Black snub-nosed monkey	MODERN SPECIES	569														ENSRBIG00000009164	DEPDC1 (ENSRBIG00000037735) #21	RPE65 (ENSRBIG00000017984) #22	WLS (ENSRBIG00000033595) #23	ENSRBIG00000034757	DIRAS3 (ENSRBIG00000008401)	GNG12 (ENSRBIG00000039245)	GADD45A (ENSRBIG00000042903)	ENSRBIG00000040591	IL12RB2 (ENSRBIG00000044278)	ENSRBIG00000040301	ENSRBIG00000031720	IL23R (ENSRBIG00000030662)	C1orf141 (ENSRBIG00000032392)	SLC35D1 (ENSRBIG00000037258)	MIER1 (ENSRBIG00000036441)	DNAI4 (ENSRBIG00000031969)	INSL5 (ENSRBIG00000044118)
Golden snub-nosed monkey	MODERN SPECIES	2184															DEPDC1 (ENSRROG00000041975) #21	RPE65 (ENSRROG00000036922) #22
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a.u	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a.u	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a.u	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Pan	ANCESTRAL SPECIES		ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #21	ENSGT00950000182913.B #22	ENSGT00390000014122.i.a.a	ENSGT00940000154430.e.a.a	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a.u	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b
Bonobo	MODERN SPECIES		ERICH3 (ENSPPAG00000032285)	LRRC53 (ENSPPAG00000031788)	TNNI3K (ENSPPAG00000038571)	LRRIQ3 (ENSPPAG00000037287)	NEGR1 (ENSPPAG00000042748)	ZRANB2 (ENSPPAG00000037049)	PTGER3 (ENSPPAG00000043015)	CTH (ENSPPAG00000030218)	ENSPPAG00000013130	ANKRD13C (ENSPPAG00000034786)	SRSF11 (ENSPPAG00000036149)	LRRC40 (ENSPPAG00000034906)	ENSPPAG00000027412	LRRC7 (ENSPPAG00000043123)	DEPDC1 (ENSPPAG00000037667) #21	RPE65 (ENSPPAG00000042629) #22	ENSPPAG00000033442	ENSPPAG00000032814	WLS (ENSPPAG00000033112) #23	DIRAS3 (ENSPPAG00000024921)	GNG12 (ENSPPAG00000036419)	ENSPPAG00000018008	GADD45A (ENSPPAG00000042185)	IL12RB2 (ENSPPAG00000029198)	SERBP1 (ENSPPAG00000027596)	ENSPPAG00000018218	IL23R (ENSPPAG00000019836)	C1orf141 (ENSPPAG00000023141)	SLC35D1 (ENSPPAG00000027327)	MIER1 (ENSPPAG00000036218)	DNAI4 (ENSPPAG00000030982)
Chimpanzee	MODERN SPECIES		LRRC53 (ENSPTRG00000000862)	TNNI3K (ENSPTRG00000000861)	FPGT (ENSPTRG00000040236)	LRRIQ3 (ENSPTRG00000022606)	NEGR1 (ENSPTRG00000000857)	ZRANB2 (ENSPTRG00000000856)	PTGER3 (ENSPTRG00000000855)	CTH (ENSPTRG00000000854)	ENSPTRG00000024173	ANKRD13C (ENSPTRG00000000853)	SRSF11 (ENSPTRG00000000852)	LRRC40 (ENSPTRG00000000850)	ENSPTRG00000049950	LRRC7 (ENSPTRG00000000848)	DEPDC1 (ENSPTRG00000000847) #21	RPE65 (ENSPTRG00000000846) #22	ENSPTRG00000048041	ENSPTRG00000050855	WLS (ENSPTRG00000000845) #23	DIRAS3 (ENSPTRG00000046970)	GNG12 (ENSPTRG00000048598)	GADD45A (ENSPTRG00000000842)	SERBP1 (ENSPTRG00000023560)	IL12RB2 (ENSPTRG00000000840)	ENSPTRG00000050354	IL23R (ENSPTRG00000000839)	C1H1orf141 (ENSPTRG00000030574)	SLC35D1 (ENSPTRG00000000838)	MIER1 (ENSPTRG00000000837)	DNAI4 (ENSPTRG00000043837)	INSL5 (ENSPTRG00000000835)
Human	MODERN SPECIES		ERICH3 (ENSG00000178965)	LRRC53 (ENSG00000162621)	TNNI3K (ENSG00000116783)	FPGT (ENSG00000254685)	FPGT-TNNI3K (ENSG00000259030)	LRRIQ3 (ENSG00000162620)	NEGR1 (ENSG00000172260)	ZRANB2 (ENSG00000132485)	PTGER3 (ENSG00000050628)	CTH (ENSG00000116761)	ANKRD13C (ENSG00000118454)	SRSF11 (ENSG00000116754)	LRRC40 (ENSG00000066557)	LRRC7 (ENSG00000033122)	DEPDC1 (ENSG00000024526) #21	RPE65 (ENSG00000116745) #22	WLS (ENSG00000116729) #23	DIRAS3 (ENSG00000162595)	GNG12 (ENSG00000172380)	GADD45A (ENSG00000116717)	SERBP1 (ENSG00000142864)	IL12RB2 (ENSG00000081985)	IL23R (ENSG00000162594)	C1orf141 (ENSG00000203963)	SLC35D1 (ENSG00000116704)	MIER1 (ENSG00000198160)	DNAI4 (ENSG00000152763)	INSL5 (ENSG00000172410)	DYNLT5 (ENSG00000152760)	SGIP1 (ENSG00000118473)	PDE4B (ENSG00000184588)
Gorilla	MODERN SPECIES		TNNI3K (ENSGGOG00000016503)	FPGT (ENSGGOG00000036582)	LRRIQ3 (ENSGGOG00000025460)	NEGR1 (ENSGGOG00000007438)	ZRANB2 (ENSGGOG00000023501)	PTGER3 (ENSGGOG00000000587)	ENSGGOG00000017176	CTH (ENSGGOG00000016539)	ENSGGOG00000043475	ANKRD13C (ENSGGOG00000016397)	SRSF11 (ENSGGOG00000005774)	LRRC40 (ENSGGOG00000000470)	ENSGGOG00000026287	LRRC7 (ENSGGOG00000015111)	DEPDC1 (ENSGGOG00000016316) #21	RPE65 (ENSGGOG00000009677) #22	ENSGGOG00000039762	WLS (ENSGGOG00000015460) #23	DIRAS3 (ENSGGOG00000043773)	GNG12 (ENSGGOG00000042148)	GADD45A (ENSGGOG00000010780)	SERBP1 (ENSGGOG00000010396)	IL12RB2 (ENSGGOG00000006395)	ENSGGOG00000041169	IL23R (ENSGGOG00000006543)	C1orf141 (ENSGGOG00000002630)	SLC35D1 (ENSGGOG00000009038)	MIER1 (ENSGGOG00000008663)	DNAI4 (ENSGGOG00000022093)	INSL5 (ENSGGOG00000027684)	DYNLT5 (ENSGGOG00000002407)
Orangutan	MODERN SPECIES		ERICH3 (ENSPPYG00000001236)	FPGT (ENSPPYG00000001237)	LRRC53 (ENSPPYG00000001238)	LRRIQ3 (ENSPPYG00000039895)	NEGR1 (ENSPPYG00000001239)	ZRANB2 (ENSPPYG00000001240)	PTGER3 (ENSPPYG00000001241)	ENSPPYG00000037732	CTH (ENSPPYG00000001242)	ENSPPYG00000001243	ANKRD13C (ENSPPYG00000001244)	SRSF11 (ENSPPYG00000001245)	LRRC40 (ENSPPYG00000001246)	LRRC7 (ENSPPYG00000001247)	DEPDC1 (ENSPPYG00000001248) #21	RPE65 (ENSPPYG00000001249) #22	WLS (ENSPPYG00000001251) #23	DIRAS3 (ENSPPYG00000001252)	GADD45A (ENSPPYG00000001254)	ENSPPYG00000001256	IL12RB2 (ENSPPYG00000001257)	IL23R (ENSPPYG00000001258)	C1orf141 (ENSPPYG00000001259)	SLC35D1 (ENSPPYG00000041264)	MIER1 (ENSPPYG00000001261)	DNAI4 (ENSPPYG00000001262)	INSL5 (ENSPPYG00000001263)	DYNLT5 (ENSPPYG00000001264)	SGIP1 (ENSPPYG00000001265)	PDE4B (ENSPPYG00000001266)	LEPR (ENSPPYG00000001267)
Gibbon	MODERN SPECIES	2	FPGT (ENSNLEG00000034002)	LRRIQ3 (ENSNLEG00000009474)	NEGR1 (ENSNLEG00000009467)	ZRANB2 (ENSNLEG00000009455)	PTGER3 (ENSNLEG00000027100)	ENSNLEG00000036270	CTH (ENSNLEG00000009419)	ENSNLEG00000027424	ANKRD13C (ENSNLEG00000033393)	SRSF11 (ENSNLEG00000009400)	LRRC40 (ENSNLEG00000009378)	LRRC7 (ENSNLEG00000009348)	ENSNLEG00000029046	ENSNLEG00000029967	DEPDC1 (ENSNLEG00000009334) #21	RPE65 (ENSNLEG00000009313) #22	ENSNLEG00000034379	WLS (ENSNLEG00000009266) #23	DIRAS3 (ENSNLEG00000029641)	GNG12 (ENSNLEG00000032969)	GADD45A (ENSNLEG00000009242)	SERBP1 (ENSNLEG00000009237)	IL12RB2 (ENSNLEG00000009216)	IL23R (ENSNLEG00000009199)
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.o.a	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.r	ENSGT00910000148470	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000154205.h.ab.b	ENSGT00530000064198	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b
Cebidae	ANCESTRAL SPECIES	1	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.o.a	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.r	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000154205.h.ab.b	ENSGT00530000064198	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00510000047602.p	ENSGT00940000159289	ENSGT00730000111078.o.a	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.r	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #21	ENSGT00950000182913.B #22	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a	ENSGT00520000055591.a.q	ENSGT00940000159829	ENSGT00940000154205.h.ab.b	ENSGT00530000064198	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b
Bolivian squirrel monkey	MODERN SPECIES	45	LRRIQ3 (ENSSBOG00000023453)	ENSSBOG00000022738	NEGR1 (ENSSBOG00000033521)	ENSSBOG00000022428	ENSSBOG00000036028	ENSSBOG00000013268	PTGER3 (ENSSBOG00000032109)	CTH (ENSSBOG00000004834)	ENSSBOG00000033163	ANKRD13C (ENSSBOG00000035265)	SRSF11 (ENSSBOG00000033461)	LRRC40 (ENSSBOG00000033042)	LRRC7 (ENSSBOG00000023202)	ENSSBOG00000024654	DEPDC1 (ENSSBOG00000032526) #21	RPE65 (ENSSBOG00000020711) #22	ENSSBOG00000017047	WLS (ENSSBOG00000029071) #23	GNG12 (ENSSBOG00000023413)	GADD45A (ENSSBOG00000026960)	SERBP1 (ENSSBOG00000034290)	IL12RB2 (ENSSBOG00000033618)	IL23R (ENSSBOG00000031496)	C1orf141 (ENSSBOG00000020938)	SLC35D1 (ENSSBOG00000033454)	MIER1 (ENSSBOG00000023688)	DNAI4 (ENSSBOG00000021867)	INSL5 (ENSSBOG00000021914)	DYNLT5 (ENSSBOG00000026948)	SGIP1 (ENSSBOG00000032865)	PDE4B (ENSSBOG00000028805)
Capuchin	MODERN SPECIES	3	ENSCCAG00000031541	ENSCCAG00000024803	NEGR1 (ENSCCAG00000029062)	ZRANB2 (ENSCCAG00000034005)	PTGER3 (ENSCCAG00000025505)	CTH (ENSCCAG00000030316)	ENSCCAG00000020484	ENSCCAG00000027424	ANKRD13C (ENSCCAG00000025154)	ENSCCAG00000036133	LRRC40 (ENSCCAG00000028127)	LRRC7 (ENSCCAG00000001437)	ENSCCAG00000029910	ENSCCAG00000022447	DEPDC1 (ENSCCAG00000037389) #21	RPE65 (ENSCCAG00000028501) #22	ENSCCAG00000035780	WLS (ENSCCAG00000031004) #23	GNG12 (ENSCCAG00000035811)	ENSCCAG00000022553	GADD45A (ENSCCAG00000037220)	ENSCCAG00000018061	IL12RB2 (ENSCCAG00000018901)	ENSCCAG00000031024	IL23R (ENSCCAG00000026286)	ENSCCAG00000028263	C1orf141 (ENSCCAG00000037706)	ENSCCAG00000032359	SLC35D1 (ENSCCAG00000029977)	MIER1 (ENSCCAG00000031798)	DNAI4 (ENSCCAG00000028639)
Marmoset	MODERN SPECIES	19	ENSCJAG00000087297	PTGER3 (ENSCJAG00000022946)	ENSCJAG00000078639	ENSCJAG00000071007	CTH (ENSCJAG00000017808)	ENSCJAG00000045097	ANKRD13C (ENSCJAG00000017783)	SRSF11 (ENSCJAG00000017704)	LRRC40 (ENSCJAG00000017669)	ENSCJAG00000071796	ENSCJAG00000043397	LRRC7 (ENSCJAG00000017648)	ENSCJAG00000083418	ENSCJAG00000084344	DEPDC1 (ENSCJAG00000017579) #21	RPE65 (ENSCJAG00000017542) #22	ENSCJAG00000041466	ENSCJAG00000079987	WLS (ENSCJAG00000017517) #23	GNG12 (ENSCJAG00000077874)	GADD45A (ENSCJAG00000083486)	IL12RB2 (ENSCJAG00000017427)	ENSCJAG00000017440	IL23R (ENSCJAG00000017407)	ENSCJAG00000031526	C1orf141 (ENSCJAG00000017398)	SLC35D1 (ENSCJAG00000017361)	MIER1 (ENSCJAG00000017276)	DNAI4 (ENSCJAG00000017231)	DYNLT5 (ENSCJAG00000039041)	SGIP1 (ENSCJAG00000017101)
Mas night monkey	MODERN SPECIES	1222	FPGT (ENSANAG00000036956)	LRRIQ3 (ENSANAG00000030577)	ENSANAG00000011332	ENSANAG00000028848	NEGR1 (ENSANAG00000022598)	ZRANB2 (ENSANAG00000018241)	PTGER3 (ENSANAG00000038521)	CTH (ENSANAG00000038461)	ENSANAG00000035214	ENSANAG00000030751	ENSANAG00000034053	ENSANAG00000018690	LRRC40 (ENSANAG00000028455)	LRRC7 (ENSANAG00000025151)	DEPDC1 (ENSANAG00000029940) #21	RPE65 (ENSANAG00000038489) #22	ENSANAG00000037963	WLS (ENSANAG00000035453) #23	GNG12 (ENSANAG00000036464)	ENSANAG00000033493	GADD45A (ENSANAG00000024828)	ENSANAG00000022432	IL12RB2 (ENSANAG00000033363)	ENSANAG00000035913	IL23R (ENSANAG00000036542)	ENSANAG00000024382	C1orf141 (ENSANAG00000029861)	SLC35D1 (ENSANAG00000035895)	MIER1 (ENSANAG00000036304)	DNAI4 (ENSANAG00000035289)	INSL5 (ENSANAG00000038322)
Tarsier	MODERN SPECIES	1829															DEPDC1 (ENSTSYG00000007146) #21	RPE65 (ENSTSYG00000013003) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.l.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Bushbaby	MODERN SPECIES	125	ENSOGAG00000032838	TNNI3K (ENSOGAG00000011573)	FPGT (ENSOGAG00000026360)	LRRIQ3 (ENSOGAG00000024471)	NEGR1 (ENSOGAG00000005858)	ZRANB2 (ENSOGAG00000000485)	PTGER3 (ENSOGAG00000025169)	ENSOGAG00000031530	ANKRD13C (ENSOGAG00000027080)	SRSF11 (ENSOGAG00000003392)	LRRC40 (ENSOGAG00000003387)	ENSOGAG00000003378	ENSOGAG00000034352	ENSOGAG00000029567	DEPDC1 (ENSOGAG00000000934) #21	RPE65 (ENSOGAG00000000937) #22	WLS (ENSOGAG00000003735) #23	DIRAS3 (ENSOGAG00000003734)	GNG12 (ENSOGAG00000004629)	GADD45A (ENSOGAG00000032078)	SERBP1 (ENSOGAG00000025884)	IL12RB2 (ENSOGAG00000000809)	ENSOGAG00000006646	SLC35D1 (ENSOGAG00000006641)	MIER1 (ENSOGAG00000006638)	DNAI4 (ENSOGAG00000006629)	DYNLT5 (ENSOGAG00000006625)	SGIP1 (ENSOGAG00000006617)	PDE4B (ENSOGAG00000016848)	LEPR (ENSOGAG00000006040)	LEPROT (ENSOGAG00000027631)
Lemuriformes	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312.ab	ENSGT00390000000312.`b	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.l.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Mouse lemur	MODERN SPECIES	11	FPGT (ENSMICG00000047410)	NEGR1 (ENSMICG00000046222)	ENSMICG00000033235	ZRANB2 (ENSMICG00000033818)	ENSMICG00000047975	PTGER3 (ENSMICG00000011907)	ENSMICG00000043640	ENSMICG00000037474	ENSMICG00000045385	ENSMICG00000016361	ANKRD13C (ENSMICG00000016341)	SRSF11 (ENSMICG00000005537)	LRRC40 (ENSMICG00000046390)	LRRC7 (ENSMICG00000005504)	DEPDC1 (ENSMICG00000002794) #21	RPE65 (ENSMICG00000002782) #22	WLS (ENSMICG00000010218) #23	ENSMICG00000026786	GNG12 (ENSMICG00000045755)	GADD45A (ENSMICG00000037822)	ENSMICG00000017733	IL12RB2 (ENSMICG00000017732)	ENSMICG00000046171	IL23R (ENSMICG00000000494)	C1orf141 (ENSMICG00000004483)	SLC35D1 (ENSMICG00000004473)	MIER1 (ENSMICG00000004461)	ENSMICG00000043215	INSL5 (ENSMICG00000047927)	DYNLT5 (ENSMICG00000046099)	ENSMICG00000035331
Lemuriformes_a	ANCESTRAL SPECIES	20															ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.l.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Coquerels sifaka	MODERN SPECIES	577															DEPDC1 (ENSPCOG00000023927) #21	RPE65 (ENSPCOG00000017897) #22	WLS (ENSPCOG00000023967) #23	ENSPCOG00000003500	GADD45A (ENSPCOG00000023251)	SERBP1 (ENSPCOG00000022373)	IL12RB2 (ENSPCOG00000016862)	IL23R (ENSPCOG00000028626)	C1orf141 (ENSPCOG00000019432)	SLC35D1 (ENSPCOG00000005606)	MIER1 (ENSPCOG00000015234)	DNAI4 (ENSPCOG00000019993)	INSL5 (ENSPCOG00000000197)	DYNLT5 (ENSPCOG00000014105)	SGIP1 (ENSPCOG00000027133)	PDE4B (ENSPCOG00000024642)
Greater bamboo lemur	MODERN SPECIES	900													ENSPSMG00000015769	ENSPSMG00000015751	DEPDC1 (ENSPSMG00000015719) #21	RPE65 (ENSPSMG00000015666) #22	ENSPSMG00000015630	WLS (ENSPSMG00000015496) #23	DIRAS3 (ENSPSMG00000015308)	GNG12 (ENSPSMG00000015293)	GADD45A (ENSPSMG00000015275)	SERBP1 (ENSPSMG00000015242)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000167450	ENSGT00940000175064	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000167450	ENSGT00940000175064	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Suina	ANCESTRAL SPECIES	27	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Chacoan peccary	MODERN SPECIES	54	TNNI3K (ENSCWAG00000006459)	LRRC53 (ENSCWAG00000006571)	FPGT (ENSCWAG00000006606)	LRRIQ3 (ENSCWAG00000006637)	NEGR1 (ENSCWAG00000006715)	ZRANB2 (ENSCWAG00000006781)	PTGER3 (ENSCWAG00000006818)	ENSCWAG00000006917	CTH (ENSCWAG00000006977)	ENSCWAG00000007276	ANKRD13C (ENSCWAG00000007305)	SRSF11 (ENSCWAG00000007484)	LRRC40 (ENSCWAG00000007563)	LRRC7 (ENSCWAG00000007628)	DEPDC1 (ENSCWAG00000008223) #21	RPE65 (ENSCWAG00000005759) #22	WLS (ENSCWAG00000005902) #23	DIRAS3 (ENSCWAG00000006110)	GNG12 (ENSCWAG00000006121)	GADD45A (ENSCWAG00000006162)	SERBP1 (ENSCWAG00000006245)	IL12RB2 (ENSCWAG00000006311)	IL23R (ENSCWAG00000006836)	ENSCWAG00000006960	SLC35D1 (ENSCWAG00000006999)	MIER1 (ENSCWAG00000007093)	ENSCWAG00000007755	ENSCWAG00000007769	INSL5 (ENSCWAG00000007785)	DYNLT5 (ENSCWAG00000007809)	SGIP1 (ENSCWAG00000007878)
Pig	MODERN SPECIES	14	TNNI3K (ENSSSCG00000040109)	ENSSSCG00000033405	FPGT (ENSSSCG00000003783)	LRRIQ3 (ENSSSCG00000003784)	NEGR1 (ENSSSCG00000025085)	ENSSSCG00000049727	ZRANB2 (ENSSSCG00000003787)	PTGER3 (ENSSSCG00000003788)	CTH (ENSSSCG00000003789)	ANKRD13C (ENSSSCG00000003790)	SRSF11 (ENSSSCG00000003791)	ENSSSCG00000003792	LRRC7 (ENSSSCG00000003793)	ENSSSCG00000042518	DEPDC1 (ENSSSCG00000033443) #21	RPE65 (ENSSSCG00000003794) #22	WLS (ENSSSCG00000003795) #23	DIRAS3 (ENSSSCG00000003797)	GNG12 (ENSSSCG00000036505)	GADD45A (ENSSSCG00000037066)	SERBP1 (ENSSSCG00000003798)	IL12RB2 (ENSSSCG00000003799)	IL23R (ENSSSCG00000003801)	C1orf141 (ENSSSCG00000003803)	SLC35D1 (ENSSSCG00000032043)	MIER1 (ENSSSCG00000030423)	DNAI4 (ENSSSCG00000022305)	ENSSSCG00000039433	DYNLT5 (ENSSSCG00000031352)	SGIP1 (ENSSSCG00000025243)	PDE4B (ENSSSCG00000003805)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Cetacea	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Odontoceti	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000235815	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000235815	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000166371	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00950000182926.a.b	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000235815	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000166371	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00950000182926.a.b	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000235815	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Narwhal	MODERN SPECIES	304	LRRC53 (ENSMMNG00015008905)	FPGT (ENSMMNG00015008924)	ENSMMNG00015008934	ENSMMNG00015004124	NEGR1 (ENSMMNG00015004300)	ZRANB2 (ENSMMNG00015004587)	PTGER3 (ENSMMNG00015004807)	ENSMMNG00015005022	ENSMMNG00015005137	CTH (ENSMMNG00015005464)	ANKRD13C (ENSMMNG00015006243)	SRSF11 (ENSMMNG00015006795)	LRRC40 (ENSMMNG00015007303)	LRRC7 (ENSMMNG00015008751)	DEPDC1 (ENSMMNG00015010717) #21	RPE65 (ENSMMNG00015011109) #22	WLS (ENSMMNG00015011864) #23	DIRAS3 (ENSMMNG00015012826)	GNG12 (ENSMMNG00015012942)	GADD45A (ENSMMNG00015013267)	SERBP1 (ENSMMNG00015013615)	IL12RB2 (ENSMMNG00015014038)	IL23R (ENSMMNG00015014588)	ENSMMNG00015015024	SLC35D1 (ENSMMNG00015015256)	MIER1 (ENSMMNG00015015671)	DNAI4 (ENSMMNG00015017222)	ENSMMNG00015018080	INSL5 (ENSMMNG00015018236)	DYNLT5 (ENSMMNG00015018432)	SGIP1 (ENSMMNG00015018941)
Beluga whale	MODERN SPECIES	74	TNNI3K (ENSDLEG00000021469)	FPGT (ENSDLEG00000021467)	ENSDLEG00000021465	ENSDLEG00000021462	ENSDLEG00000021459	NEGR1 (ENSDLEG00000021457)	ZRANB2 (ENSDLEG00000021455)	PTGER3 (ENSDLEG00000021453)	CTH (ENSDLEG00000021449)	ANKRD13C (ENSDLEG00000021447)	SRSF11 (ENSDLEG00000021445)	ENSDLEG00000021443	LRRC40 (ENSDLEG00000021441)	LRRC7 (ENSDLEG00000021431)	DEPDC1 (ENSDLEG00000021426) #21	RPE65 (ENSDLEG00000021421) #22	WLS (ENSDLEG00000021417) #23	DIRAS3 (ENSDLEG00000021415)	GNG12 (ENSDLEG00000021413)	GADD45A (ENSDLEG00000021410)	SERBP1 (ENSDLEG00000021405)	IL12RB2 (ENSDLEG00000021402)	IL23R (ENSDLEG00000021400)	C1orf141 (ENSDLEG00000021395)	SLC35D1 (ENSDLEG00000021393)	MIER1 (ENSDLEG00000021386)	ENSDLEG00000021383	DNAI4 (ENSDLEG00000021380)	ENSDLEG00000021377	TCTEX1D1 (ENSDLEG00000021374)	SGIP1 (ENSDLEG00000021360)
Vaquita	MODERN SPECIES		ENSPSNG00000001349	TNNI3K (ENSPSNG00000001272)	FPGT (ENSPSNG00000001225)	LRRIQ3 (ENSPSNG00000001174)	ENSPSNG00000001141	NEGR1 (ENSPSNG00000001115)	ZRANB2 (ENSPSNG00000001069)	PTGER3 (ENSPSNG00000001032)	ENSPSNG00000001013	CTH (ENSPSNG00000000964)	ANKRD13C (ENSPSNG00000000907)	SRSF11 (ENSPSNG00000000868)	LRRC40 (ENSPSNG00000000830)	LRRC7 (ENSPSNG00000000776)	DEPDC1 (ENSPSNG00000000663) #21	RPE65 (ENSPSNG00000000590) #22	WLS (ENSPSNG00000000517) #23	DIRAS3 (ENSPSNG00000000480)	GNG12 (ENSPSNG00000000467)	GADD45A (ENSPSNG00000000436)	SERBP1 (ENSPSNG00000000393)	IL12RB2 (ENSPSNG00000000245)	IL23R (ENSPSNG00000000116)	ENSPSNG00000000087	SLC35D1 (ENSPSNG00000000078)	MIER1 (ENSPSNG00000000044)	ENSPSNG00000000018	DNAI4 (ENSPSNG00000003982)	INSL5 (ENSPSNG00000003955)	DYNLT5 (ENSPSNG00000003942)	SGIP1 (ENSPSNG00000003872)
Dolphin	MODERN SPECIES	1382															DEPDC1 (ENSTTRG00000002760) #21	RPE65 (ENSTTRG00000002759) #22	WLS (ENSTTRG00000002758) #23	DIRAS3 (ENSTTRG00000002757)
Sperm whale	MODERN SPECIES	15	CRYZ (ENSPCTG00005019878)	ENSPCTG00005020000	TNNI3K (ENSPCTG00005020066)	LRRC53 (ENSPCTG00005020239)	FPGT (ENSPCTG00005020275)	ENSPCTG00005020300	NEGR1 (ENSPCTG00005020328)	ZRANB2 (ENSPCTG00005020419)	PTGER3 (ENSPCTG00005020486)	CTH (ENSPCTG00005020597)	ANKRD13C (ENSPCTG00005020681)	SRSF11 (ENSPCTG00005009159)	LRRC40 (ENSPCTG00005009424)	LRRC7 (ENSPCTG00005010553)	DEPDC1 (ENSPCTG00005012486) #21	RPE65 (ENSPCTG00005013056) #22	WLS (ENSPCTG00005013653) #23	DIRAS3 (ENSPCTG00005014188)	GNG12 (ENSPCTG00005014267)	GADD45A (ENSPCTG00005014488)	SERBP1 (ENSPCTG00005014874)	IL12RB2 (ENSPCTG00005015758)	IL23R (ENSPCTG00005017307)	ENSPCTG00005017739	SLC35D1 (ENSPCTG00005017949)	MIER1 (ENSPCTG00005018555)	DNAI4 (ENSPCTG00005019453)	ENSPCTG00005019975	INSL5 (ENSPCTG00005020021)	TCTEX1D1 (ENSPCTG00005020131)	SGIP1 (ENSPCTG00005020468)
Blue whale	MODERN SPECIES		LRRC53 (ENSBMSG00010008498)	TNNI3K (ENSBMSG00010008462)	FPGT (ENSBMSG00010008441)	LRRIQ3 (ENSBMSG00010005078)	ENSBMSG00010005055	NEGR1 (ENSBMSG00010005031)	ZRANB2 (ENSBMSG00010005010)	PTGER3 (ENSBMSG00010004995)	ENSBMSG00010004991	CTH (ENSBMSG00010004973)	ANKRD13C (ENSBMSG00010004950)	SRSF11 (ENSBMSG00010004935)	LRRC40 (ENSBMSG00010004930)	LRRC7 (ENSBMSG00010004781)	DEPDC1 (ENSBMSG00010004720) #21	RPE65 (ENSBMSG00010004694) #22	WLS (ENSBMSG00010004687) #23	ENSBMSG00010004680	GNG12 (ENSBMSG00010004664)	GADD45A (ENSBMSG00010004628)	ENSBMSG00010004579	IL12RB2 (ENSBMSG00010004316)	IL23R (ENSBMSG00010004266)	ENSBMSG00010004253	SLC35D1 (ENSBMSG00010004244)	MIER1 (ENSBMSG00010004136)	DNAI4 (ENSBMSG00010004008)	INSL5 (ENSBMSG00010003985)	DYNLT5 (ENSBMSG00010003974)	SGIP1 (ENSBMSG00010003712)	PDE4B (ENSBMSG00010003487)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000167450	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000167450	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000167450	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000167450	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00390000016794.b.o	ENSGT00940000159289	ENSGT00730000111078.`b	ENSGT01030000234559.b	ENSGT00940000167970.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Goat	MODERN SPECIES	22	ENSCHIG00000026455	TNNI3K (ENSCHIG00000012349)	FPGT (ENSCHIG00000021991)	LRRIQ3 (ENSCHIG00000018471)	ENSCHIG00000025873	ENSCHIG00000011314	ENSCHIG00000009410	PTGER3 (ENSCHIG00000020559)	ENSCHIG00000026245	CTH (ENSCHIG00000019727)	ANKRD13C (ENSCHIG00000021359)	SRSF11 (ENSCHIG00000025295)	LRRC40 (ENSCHIG00000017526)	LRRC7 (ENSCHIG00000026785)	DEPDC1 (ENSCHIG00000010008) #21	RPE65 (ENSCHIG00000023075) #22	ENSCHIG00000008135	WLS (ENSCHIG00000015817) #23	GNG12 (ENSCHIG00000015506)	GADD45A (ENSCHIG00000025537)	ENSCHIG00000011544	SERBP1 (ENSCHIG00000026670)	IL12RB2 (ENSCHIG00000026777)	IL23R (ENSCHIG00000023744)	C1orf141 (ENSCHIG00000027076)	SLC35D1 (ENSCHIG00000026528)	MIER1 (ENSCHIG00000017898)	DNAI4 (ENSCHIG00000003835)	INSL5 (ENSCHIG00000016279)	DYNLT5 (ENSCHIG00000025637)	SGIP1 (ENSCHIG00000011387)
Rambouillet Sheep	MODERN SPECIES		HS3ST3B1 (ENSOARG00020014261)	ENSOARG00020014153	RPRM (ENSOARG00020014137)	NEGR1 (ENSOARG00020014000)	ENSOARG00020013954	ENSOARG00020013817	PTGER3 (ENSOARG00020013470)	ENSOARG00020013423	ENSOARG00020013381	CTH (ENSOARG00020013082)	ANKRD13C (ENSOARG00020012714)	SRSF11 (ENSOARG00020012616)	LRRC40 (ENSOARG00020012472)	LRRC7 (ENSOARG00020011350)	DEPDC1 (ENSOARG00020010867) #21	RPE65 (ENSOARG00020010689) #22	WLS (ENSOARG00020010326) #23	DIRAS3 (ENSOARG00020010267)	GNG12 (ENSOARG00020010213)	GADD45A (ENSOARG00020009930)	SERBP1 (ENSOARG00020009805)	IL12RB2 (ENSOARG00020009558)	IL23R (ENSOARG00020009278)	C1orf141 (ENSOARG00020009212)	SLC35D1 (ENSOARG00020009073)	MIER1 (ENSOARG00020008644)	DNAI4 (ENSOARG00020008367)	INSL5 (ENSOARG00020008319)	DYNLT5 (ENSOARG00020008255)	ENSOARG00020008215	SGIP1 (ENSOARG00020007630)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00990000207423	ENSGT00940000159131	ENSGT00950000185699	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT01100000264350	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198.c	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Bos	ANCESTRAL SPECIES		ENSGT00950000185699	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT01100000264350	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312.u	ENSGT00950000182928.B.d.b	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00940000161805.p.a.b	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198.c	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000185699	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT01100000264350	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312.u	ENSGT00950000182928.B.d.b	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00940000161805.p.a.b	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198.c	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00400000022103.a.jb.a	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Cow	MODERN SPECIES	22	ENSBTAG00000050657	FPGT (ENSBTAG00000038480)	LRRIQ3 (ENSBTAG00000019401)	ENSBTAG00000006600	NEGR1 (ENSBTAG00000055278)	ENSBTAG00000005099	ZRANB2 (ENSBTAG00000002627)	PTGER3 (ENSBTAG00000019230)	CTH (ENSBTAG00000014791)	ANKRD13C (ENSBTAG00000015482)	SRSF11 (ENSBTAG00000015474)	LRRC40 (ENSBTAG00000008243)	LRRC7 (ENSBTAG00000009338)	DEPDC1 (ENSBTAG00000001343) #21	ENSBTAG00000030890	RPE65 (ENSBTAG00000020494) #22	WLS (ENSBTAG00000012976) #23	DIRAS3 (ENSBTAG00000012182)	GNG12 (ENSBTAG00000054533)	GADD45A (ENSBTAG00000013860)	SERBP1 (ENSBTAG00000012957)	IL12RB2 (ENSBTAG00000009455)	IL23R (ENSBTAG00000014983)	C3H1orf141 (ENSBTAG00000030809)	SLC35D1 (ENSBTAG00000005445)	MIER1 (ENSBTAG00000005443)	DNAI4 (ENSBTAG00000005442)	ENSBTAG00000049696	INSL5 (ENSBTAG00000003850)	DYNLT5 (ENSBTAG00000011097)	SGIP1 (ENSBTAG00000011091)
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005024686	NEGR1 (ENSBIXG00005024619)	ENSBIXG00005004195	ZRANB2 (ENSBIXG00005024548)	ENSBIXG00005024494	CTH (ENSBIXG00005024430)	ENSBIXG00005006847	ANKRD13C (ENSBIXG00005004155)	ENSBIXG00005006287	SRSF11 (ENSBIXG00005007179)	LRRC40 (ENSBIXG00005024169)	LRRC7 (ENSBIXG00005024014)	ENSBIXG00005006675	DEPDC1 (ENSBIXG00005023771) #21	ENSBIXG00005023720	RPE65 (ENSBIXG00005023709) #22	WLS (ENSBIXG00005023640) #23	DIRAS3 (ENSBIXG00005023520)	GADD45A (ENSBIXG00005023475)	SERBP1 (ENSBIXG00005023375)	IL12RB2 (ENSBIXG00005023295)	ENSBIXG00005023212	IL23R (ENSBIXG00005023197)	SLC35D1 (ENSBIXG00005023139)	MIER1 (ENSBIXG00005003930)	DNAI4 (ENSBIXG00005022849)	ENSBIXG00005022763	INSL5 (ENSBIXG00005022735)	DYNLT5 (ENSBIXG00005003891)	SGIP1 (ENSBIXG00005022689)	ENSBIXG00005022613
Bos_a	ANCESTRAL SPECIES	1	ENSGT00950000185699	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312.u	ENSGT00950000182928.B.d.b	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00940000161805.p.a.b	ENSGT00940000165941	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b.e	ENSGT00940000164094	ENSGT00390000001618.cb.b	ENSGT00390000000378.d.b.fb.b.c.h	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198.c	ENSGT00530000064198.d	ENSGT00390000014549.g	ENSGT00990000205383	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209
Wild yak	MODERN SPECIES	1909															ENSBMUG00000023471	RPE65 (ENSBMUG00000023479) #22
Domestic yak	MODERN SPECIES	22	LRRIQ3 (ENSBGRG00000004929)	ENSBGRG00000005068	NEGR1 (ENSBGRG00000005094)	ZRANB2 (ENSBGRG00000005234)	PTGER3 (ENSBGRG00000005331)	ENSBGRG00000005391	CTH (ENSBGRG00000005403)	ANKRD13C (ENSBGRG00000005513)	ENSBGRG00000007232	SRSF11 (ENSBGRG00000007267)	LRRC40 (ENSBGRG00000007429)	LRRC7 (ENSBGRG00000007643)	ENSBGRG00000008029	DEPDC1 (ENSBGRG00000008047) #21	ENSBGRG00000008289	RPE65 (ENSBGRG00000008339) #22	WLS (ENSBGRG00000008504) #23	DIRAS3 (ENSBGRG00000008874)	ENSBGRG00000008894	ENSBGRG00000008913	ENSBGRG00000008938	GADD45A (ENSBGRG00000008972)	SERBP1 (ENSBGRG00000009099)	IL12RB2 (ENSBGRG00000009248)	ENSBGRG00000009394	ENSBGRG00000009413	ENSBGRG00000009440	ENSBGRG00000009539	ENSBGRG00000009599	SLC35D1 (ENSBGRG00000009631)	MIER1 (ENSBGRG00000009812)
American bison	MODERN SPECIES	3114															DEPDC1 (ENSBBBG00000013612) #21	RPE65 (ENSBBBG00000013636) #22	WLS (ENSBBBG00000002852) #23	DIRAS3 (ENSBBBG00000013668)
Siberian musk deer	MODERN SPECIES	339	ERICH3 (ENSMMSG00000012862)	TNNI3K (ENSMMSG00000012893)	ENSMMSG00000012918	FPGT (ENSMMSG00000012942)	LRRIQ3 (ENSMMSG00000012955)	NEGR1 (ENSMMSG00000013007)	ZRANB2 (ENSMMSG00000013063)	PTGER3 (ENSMMSG00000013125)	CTH (ENSMMSG00000013275)	ENSMMSG00000013321	ANKRD13C (ENSMMSG00000004375)	SRSF11 (ENSMMSG00000004414)	LRRC40 (ENSMMSG00000004447)	LRRC7 (ENSMMSG00000004578)	DEPDC1 (ENSMMSG00000005154) #21	RPE65 (ENSMMSG00000005215) #22	ENSMMSG00000005268	WLS (ENSMMSG00000005308) #23	DIRAS3 (ENSMMSG00000005467)	GNG12 (ENSMMSG00000005481)	GADD45A (ENSMMSG00000005535)	ENSMMSG00000005637	IL12RB2 (ENSMMSG00000005957)	IL23R (ENSMMSG00000006578)	ENSMMSG00000006661	SLC35D1 (ENSMMSG00000006681)	MIER1 (ENSMMSG00000006725)	DNAI4 (ENSMMSG00000006873)	INSL5 (ENSMMSG00000007080)	DYNLT5 (ENSMMSG00000007108)	SGIP1 (ENSMMSG00000007149)
Yarkand deer	MODERN SPECIES	12	FPGT (ENSCHYG00000020308)	LRRIQ3 (ENSCHYG00000020368)	ENSCHYG00000020540	ENSCHYG00000020612	NEGR1 (ENSCHYG00000020697)	ZRANB2 (ENSCHYG00000020949)	PTGER3 (ENSCHYG00000021260)	ENSCHYG00000021352	CTH (ENSCHYG00000021378)	ANKRD13C (ENSCHYG00000021606)	ENSCHYG00000021795	SRSF11 (ENSCHYG00000021820)	LRRC40 (ENSCHYG00000021953)	LRRC7 (ENSCHYG00000022051)	DEPDC1 (ENSCHYG00000022371) #21	RPE65 (ENSCHYG00000022637) #22	ENSCHYG00000022731	WLS (ENSCHYG00000022810) #23	DIRAS3 (ENSCHYG00000023484)	ENSCHYG00000023503	ENSCHYG00000023560	ENSCHYG00000023662	ENSCHYG00000023866	ENSCHYG00000023995	ENSCHYG00000024006	ENSCHYG00000024039	ENSCHYG00000024060	ENSCHYG00000024134	ENSCHYG00000024521	ENSCHYG00000024658	ENSCHYG00000024671
Camelidae	ANCESTRAL SPECIES	11	ENSGT00940000153304.C	ENSGT00940000154882.s	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00990000205383	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Alpaca	MODERN SPECIES	1466										CTH (ENSVPAG00000011468)	ENSVPAG00000011467	SRSF11 (ENSVPAG00000011465)	LRRC40 (ENSVPAG00000011464)	LRRC7 (ENSVPAG00000011460)	DEPDC1 (ENSVPAG00000011458) #21	RPE65 (ENSVPAG00000011457) #22	WLS (ENSVPAG00000011454) #23
Arabian camel	MODERN SPECIES	4	ENSCDRG00005010774	ENSCDRG00005010684	LRRC53 (ENSCDRG00005010584)	TNNI3K (ENSCDRG00005010113)	LRRIQ3 (ENSCDRG00005009954)	ENSCDRG00005009889	NEGR1 (ENSCDRG00005009715)	ZRANB2 (ENSCDRG00005009506)	PTGER3 (ENSCDRG00005009342)	CTH (ENSCDRG00005009028)	ANKRD13C (ENSCDRG00005008826)	SRSF11 (ENSCDRG00005008759)	LRRC40 (ENSCDRG00005008600)	LRRC7 (ENSCDRG00005008143)	DEPDC1 (ENSCDRG00005008010) #21	RPE65 (ENSCDRG00005007822) #22	WLS (ENSCDRG00005007433) #23	DIRAS3 (ENSCDRG00005007399)	GNG12 (ENSCDRG00005007385)	GADD45A (ENSCDRG00005007265)	SERBP1 (ENSCDRG00005007209)	IL12RB2 (ENSCDRG00005006997)	IL23R (ENSCDRG00005006826)	ENSCDRG00005006792	SLC35D1 (ENSCDRG00005006715)	MIER1 (ENSCDRG00005006406)	DNAI4 (ENSCDRG00005006212)	INSL5 (ENSCDRG00005006189)	DYNLT5 (ENSCDRG00005006169)	SGIP1 (ENSCDRG00005005920)	PDE4B (ENSCDRG00005005526)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000167450	ENSGT00940000175064	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Felidae	ANCESTRAL SPECIES	10	ENSGT00990000207423	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000161095	ENSGT00940000175064	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000158854.g.a	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000158854.g.a	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a
leopard	MODERN SPECIES	16	TNNI3K (ENSPPRG00000015003)	LRRC53 (ENSPPRG00000014287)	FPGT (ENSPPRG00000013879)	ENSPPRG00000013198	ENSPPRG00000017420	NEGR1 (ENSPPRG00000010074)	ZRANB2 (ENSPPRG00000008962)	PTGER3 (ENSPPRG00000007485)	CTH (ENSPPRG00000005228)	ANKRD13C (ENSPPRG00000003766)	SRSF11 (ENSPPRG00000002720)	LRRC40 (ENSPPRG00000000254)	ENSPPRG00000022341	ENSPPRG00000017380	DEPDC1 (ENSPPRG00000014611) #21	RPE65 (ENSPPRG00000013670) #22	WLS (ENSPPRG00000013013) #23	GNG12 (ENSPPRG00000009675)	GADD45A (ENSPPRG00000009546)	SERBP1 (ENSPPRG00000008971)	IL12RB2 (ENSPPRG00000008198)	IL23R (ENSPPRG00000004538)	C1orf141 (ENSPPRG00000004147)	SLC35D1 (ENSPPRG00000003133)	MIER1 (ENSPPRG00000002692)	DNAI4 (ENSPPRG00000022534)	DYNLT5 (ENSPPRG00000019016)	SGIP1 (ENSPPRG00000017177)	PDE4B (ENSPPRG00000011824)	LEPR (ENSPPRG00000006910)	LEPROT (ENSPPRG00000002176)
lion	MODERN SPECIES	8	ENSPLOG00000009288	TNNI3K (ENSPLOG00000009309)	LRRC53 (ENSPLOG00000009341)	FPGT (ENSPLOG00000009376)	LRRIQ3 (ENSPLOG00000009451)	ENSPLOG00000009529	NEGR1 (ENSPLOG00000009541)	ZRANB2 (ENSPLOG00000009609)	PTGER3 (ENSPLOG00000009711)	CTH (ENSPLOG00000009821)	ANKRD13C (ENSPLOG00000009877)	SRSF11 (ENSPLOG00000009962)	LRRC40 (ENSPLOG00000010064)	LRRC7 (ENSPLOG00000010287)	DEPDC1 (ENSPLOG00000010722) #21	RPE65 (ENSPLOG00000010779) #22	WLS (ENSPLOG00000011018) #23	GNG12 (ENSPLOG00000011515)	GADD45A (ENSPLOG00000011555)	SERBP1 (ENSPLOG00000011662)	IL12RB2 (ENSPLOG00000011722)	IL23R (ENSPLOG00000011807)	C1orf141 (ENSPLOG00000011956)	SLC35D1 (ENSPLOG00000012137)	MIER1 (ENSPLOG00000012250)	DNAI4 (ENSPLOG00000012806)	DYNLT5 (ENSPLOG00000012982)	SGIP1 (ENSPLOG00000013099)	PDE4B (ENSPLOG00000006308)	LEPR (ENSPLOG00000006675)	DNAJC6 (ENSPLOG00000006842)
Tiger	MODERN SPECIES	311		ENSPTIG00000011312	FPGT (ENSPTIG00000012210)	ENSPTIG00000014031	ENSPTIG00000006252	ENSPTIG00000015221	NEGR1 (ENSPTIG00000015387)	ZRANB2 (ENSPTIG00000017134)	CTH (ENSPTIG00000019906)	ANKRD13C (ENSPTIG00000005530)	SRSF11 (ENSPTIG00000008536)	LRRC40 (ENSPTIG00000010337)	ENSPTIG00000011749	ENSPTIG00000012986	DEPDC1 (ENSPTIG00000014898) #21	RPE65 (ENSPTIG00000016708) #22	WLS (ENSPTIG00000017665) #23	GNG12 (ENSPTIG00000000039)	GADD45A (ENSPTIG00000002992)	SERBP1 (ENSPTIG00000005938)	IL12RB2 (ENSPTIG00000007381)	IL23R (ENSPTIG00000013297)	C1orf141 (ENSPTIG00000014969)	SLC35D1 (ENSPTIG00000016895)	MIER1 (ENSPTIG00000017971)	DNAI4 (ENSPTIG00000012909)	DYNLT5 (ENSPTIG00000015008)	SGIP1 (ENSPTIG00000016312)	PDE4B (ENSPTIG00000007272)	LEPR (ENSPTIG00000015515)	LEPROT (ENSPTIG00000017653)
Cat	MODERN SPECIES	239	LRRC53 (ENSFCAG00000006394)	TNNI3K (ENSFCAG00000038109)	FPGT (ENSFCAG00000029185)	LRRIQ3 (ENSFCAG00000030157)	ENSFCAG00000027931	NEGR1 (ENSFCAG00000033201)	ENSFCAG00000052553	ZRANB2 (ENSFCAG00000028246)	PTGER3 (ENSFCAG00000006185)	CTH (ENSFCAG00000012450)	ANKRD13C (ENSFCAG00000012449)	SRSF11 (ENSFCAG00000012448)	LRRC40 (ENSFCAG00000026681)	LRRC7 (ENSFCAG00000023714)	DEPDC1 (ENSFCAG00000012566) #21	RPE65 (ENSFCAG00000012565) #22	WLS (ENSFCAG00000012564) #23	GNG12 (ENSFCAG00000045903)	GADD45A (ENSFCAG00000002987)	SERBP1 (ENSFCAG00000000606)	IL12RB2 (ENSFCAG00000001940)	IL23R (ENSFCAG00000001939)	CC1H1orf141 (ENSFCAG00000044655)	SLC35D1 (ENSFCAG00000005509)	MIER1 (ENSFCAG00000028898)	DNAI4 (ENSFCAG00000023522)	DYNLT5 (ENSFCAG00000038222)	SGIP1 (ENSFCAG00000011575)	PDE4B (ENSFCAG00000030002)	LEPR (ENSFCAG00000011703)	DNAJC6 (ENSFCAG00000008367)
Caniformia	ANCESTRAL SPECIES	2	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Canidae	ANCESTRAL SPECIES	18	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000167450	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000167450	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT01010000228719	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a
Dog	MODERN SPECIES	34	CRYZ (ENSCAFG00845004617)	ENSCAFG00845004648	TNNI3K (ENSCAFG00845004693)	ENSCAFG00845004736	FPGT (ENSCAFG00845004746)	LRRIQ3 (ENSCAFG00845004764)	NEGR1 (ENSCAFG00845004834)	ZRANB2 (ENSCAFG00845004863)	PTGER3 (ENSCAFG00845012614)	ENSCAFG00845012905	ANKRD13C (ENSCAFG00845012966)	SRSF11 (ENSCAFG00845013020)	LRRC40 (ENSCAFG00845013116)	LRRC7 (ENSCAFG00845013252)	DEPDC1 (ENSCAFG00845013585) #21	RPE65 (ENSCAFG00845013646) #22	WLS (ENSCAFG00845013715) #23	ENSCAFG00845014009	GADD45A (ENSCAFG00845014040)
Dingo	MODERN SPECIES	172	CRYZ (ENSCAFG00020017097)	TNNI3K (ENSCAFG00020017106)	FPGT (ENSCAFG00020017117)	ENSCAFG00020017119	NEGR1 (ENSCAFG00020017144)	ZRANB2 (ENSCAFG00020017151)	PTGER3 (ENSCAFG00020017158)	CTH (ENSCAFG00020017171)	ANKRD13C (ENSCAFG00020017183)	ENSCAFG00020017253	ENSCAFG00020017255	ENSCAFG00020017259	LRRC40 (ENSCAFG00020017260)	LRRC7 (ENSCAFG00020017279)	DEPDC1 (ENSCAFG00020017390) #21	RPE65 (ENSCAFG00020017401) #22	WLS (ENSCAFG00020017407) #23	ENSCAFG00020017412	ENSCAFG00020017436	GNG12 (ENSCAFG00020017437)	GADD45A (ENSCAFG00020017438)
Red fox	MODERN SPECIES	231														ENSVVUG00000008869	DEPDC1 (ENSVVUG00000008852) #21	RPE65 (ENSVVUG00000008358) #22	WLS (ENSVVUG00000008333) #23	GNG12 (ENSVVUG00000008310)	GADD45A (ENSVVUG00000008309)
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Mustelinae	ANCESTRAL SPECIES	39	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
American mink	MODERN SPECIES	57															DEPDC1 (ENSNVIG00000011335) #21	RPE65 (ENSNVIG00000011309) #22	WLS (ENSNVIG00000011264) #23	DIRAS3 (ENSNVIG00000011249)	GBG12 (ENSNVIG00000011236)	GADD45A (ENSNVIG00000011189)	SERBP1 (ENSNVIG00000011142)	IL12RB2 (ENSNVIG00000011029)	IL23R (ENSNVIG00000010999)	ENSNVIG00000010983	SLC35D1 (ENSNVIG00000010971)	MIER1 (ENSNVIG00000010880)	DNAI4 (ENSNVIG00000010851)	DYNLT5 (ENSNVIG00000010848)	SGIP1 (ENSNVIG00000010770)	PDE4B (ENSNVIG00000010683)	LEPR (ENSNVIG00000010636)
Ferret	MODERN SPECIES	254					NEGR1 (ENSMPUG00000000921)	ZRANB2 (ENSMPUG00000000917)	PTGER3 (ENSMPUG00000000913)	ENSMPUG00000018477	ENSMPUG00000000901	CTH (ENSMPUG00000000898)	ANKRD13C (ENSMPUG00000000895)	SRSF11 (ENSMPUG00000000892)	LRRC40 (ENSMPUG00000000890)	LRRC7 (ENSMPUG00000000888)	DEPDC1 (ENSMPUG00000000887) #21	RPE65 (ENSMPUG00000000810) #22	WLS (ENSMPUG00000000807) #23	ENSMPUG00000000803	ENSMPUG00000000800	GADD45A (ENSMPUG00000000798)	SERBP1 (ENSMPUG00000000797)	IL12RB2 (ENSMPUG00000000794)	ENSMPUG00000000792	IL23R (ENSMPUG00000000781)	C1orf141 (ENSMPUG00000000780)	SLC35D1 (ENSMPUG00000000778)	MIER1 (ENSMPUG00000000774)	DNAI4 (ENSMPUG00000000772)	DYNLT5 (ENSMPUG00000000770)	SGIP1 (ENSMPUG00000000764)	PDE4B (ENSMPUG00000000760)
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182913.B.a #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	761																ENSAMEG00000030874 #22
Giant Panda	MODERN SPECIES	791																ENSAMEG00000027398 #22
Ursidae	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.b #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.mb	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209
Ursus	ANCESTRAL SPECIES	18	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.b #22	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.mb	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209
American black bear	MODERN SPECIES	5504															DEPDC1 (ENSUAMG00000018057) #21	RPE65 (ENSUAMG00000018058) #22
Polar bear	MODERN SPECIES	170	TNNI3K (ENSUMAG00000006497)	ENSUMAG00000006528	FPGT (ENSUMAG00000006532)	ENSUMAG00000006534	NEGR1 (ENSUMAG00000006553)	ENSUMAG00000006557	ZRANB2 (ENSUMAG00000006559)	PTGER3 (ENSUMAG00000006569)	ENSUMAG00000006594	CTH (ENSUMAG00000006601)	ANKRD13C (ENSUMAG00000006610)	SRSF11 (ENSUMAG00000006618)	LRRC40 (ENSUMAG00000006621)	LRRC7 (ENSUMAG00000006650)	DEPDC1 (ENSUMAG00000006778) #21	RPE65 (ENSUMAG00000006787) #22	WLS (ENSUMAG00000006798) #23	GNG12 (ENSUMAG00000006831)	GADD45A (ENSUMAG00000006834)	SERBP1 (ENSUMAG00000006841)	IL12RB2 (ENSUMAG00000006846)	IL23R (ENSUMAG00000006850)	C1orf141 (ENSUMAG00000006856)	SLC35D1 (ENSUMAG00000006858)	MIER1 (ENSUMAG00000006869)	DNAI4 (ENSUMAG00000006884)	DYNLT5 (ENSUMAG00000006901)	SGIP1 (ENSUMAG00000006920)	PDE4B (ENSUMAG00000007042)	ENSUMAG00000007396	LEPR (ENSUMAG00000007490)
Giant Panda	MODERN SPECIES	11	CRYZ (ENSAMEG00000003442)	ENSAMEG00000003427	ENSAMEG00000003421	TNNI3K (ENSAMEG00000003381)	FPGT (ENSAMEG00000027489)	LRRIQ3 (ENSAMEG00000031314)	NEGR1 (ENSAMEG00000012764)	ZRANB2 (ENSAMEG00000003845)	PTGER3 (ENSAMEG00000003871)	CTH (ENSAMEG00000000028)	ANKRD13C (ENSAMEG00000000027)	SRSF11 (ENSAMEG00000024726)	LRRC40 (ENSAMEG00000011362)	LRRC7 (ENSAMEG00000011407)	DEPDC1 (ENSAMEG00000000402) #21	RPE65 (ENSAMEG00000000442) #22	WLS (ENSAMEG00000004493) #23	GNG12 (ENSAMEG00000004527)	GADD45A (ENSAMEG00000004529)	SERBP1 (ENSAMEG00000004536)	IL12RB2 (ENSAMEG00000004570)	IL23R (ENSAMEG00000004611)	C1orf141 (ENSAMEG00000004616)	SLC35D1 (ENSAMEG00000004626)	MIER1 (ENSAMEG00000004657)	DNAI4 (ENSAMEG00000004681)	DYNLT5 (ENSAMEG00000004714)	SGIP1 (ENSAMEG00000004727)	PDE4B (ENSAMEG00000018054)	LEPR (ENSAMEG00000018031)	LEPROT (ENSAMEG00000025091)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Equus	ANCESTRAL SPECIES	3	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000161095	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Horse	MODERN SPECIES	26	CRYZ (ENSECAG00000008254)	ERICH3 (ENSECAG00000010486)	TNNI3K (ENSECAG00000010595)	LRRC53 (ENSECAG00000013802)	FPGT (ENSECAG00000039694)	LRRIQ3 (ENSECAG00000035457)	NEGR1 (ENSECAG00000014027)	ZRANB2 (ENSECAG00000014173)	PTGER3 (ENSECAG00000014239)	CTH (ENSECAG00000015050)	ANKRD13C (ENSECAG00000016794)	SRSF11 (ENSECAG00000017756)	LRRC40 (ENSECAG00000019554)	LRRC7 (ENSECAG00000006937)	DEPDC1 (ENSECAG00000008461) #21	RPE65 (ENSECAG00000010170) #22	WLS (ENSECAG00000012045) #23	DIRAS3 (ENSECAG00000030001)	GADD45A (ENSECAG00000040631)	SERBP1 (ENSECAG00000014617)	IL12RB2 (ENSECAG00000016537)	IL23R (ENSECAG00000017239)	C5H1orf141 (ENSECAG00000019495)	SLC35D1 (ENSECAG00000019542)	MIER1 (ENSECAG00000020475)	DNAI4 (ENSECAG00000023875)	SGIP1 (ENSECAG00000000852)	PDE4B (ENSECAG00000011003)	LEPR (ENSECAG00000013863)	LEPROT (ENSECAG00000016346)	DNAJC6 (ENSECAG00000016430)
Donkey	MODERN SPECIES	7	ERICH3 (ENSEASG00005007783)	TNNI3K (ENSEASG00005007798)	LRRC53 (ENSEASG00005007815)	FPGT (ENSEASG00005007818)	LRRIQ3 (ENSEASG00005007820)	NEGR1 (ENSEASG00005007828)	ZRANB2 (ENSEASG00005007831)	PTGER3 (ENSEASG00005007839)	CTH (ENSEASG00005007840)	ANKRD13C (ENSEASG00005007844)	SRSF11 (ENSEASG00005007847)	LRRC40 (ENSEASG00005007850)	ENSEASG00005007851	ENSEASG00005007856	DEPDC1 (ENSEASG00005007861) #21	RPE65 (ENSEASG00005007863) #22	WLS (ENSEASG00005007867) #23	DIRAS3 (ENSEASG00005038197)	GNG12 (ENSEASG00005007872)	GADD45A (ENSEASG00005024228)	SERBP1 (ENSEASG00005007881)	IL12RB2 (ENSEASG00005007885)	IL23R (ENSEASG00005007895)	C1orf141 (ENSEASG00005007907)	SLC35D1 (ENSEASG00005028888)	MIER1 (ENSEASG00005007916)	DNAI4 (ENSEASG00005007939)	INSL5 (ENSEASG00005024533)	DYNLT5 (ENSEASG00005037593)	SGIP1 (ENSEASG00005007954)	PDE4B (ENSEASG00005007980)
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Greater horseshoe bat	MODERN SPECIES	27	LRRC53 (ENSRFEG00010005075)	TNNI3K (ENSRFEG00010005059)	FPGT (ENSRFEG00010005047)	LRRIQ3 (ENSRFEG00010005038)	NEGR1 (ENSRFEG00010005020)	ZRANB2 (ENSRFEG00010005004)	ENSRFEG00010004991	ENSRFEG00010004976	ENSRFEG00010004954	SRSF11 (ENSRFEG00010004928)	LRRC40 (ENSRFEG00010004902)	LRRC7 (ENSRFEG00010004869)	ENSRFEG00010004831	ENSRFEG00010004819	DEPDC1 (ENSRFEG00010004806) #21	RPE65 (ENSRFEG00010004778) #22	WLS (ENSRFEG00010004748) #23	DIRAS3 (ENSRFEG00010004732)	GADD45A (ENSRFEG00010004705)	ENSRFEG00010004678	IL12RB2 (ENSRFEG00010004653)	IL23R (ENSRFEG00010004610)	C1orf141 (ENSRFEG00010004583)	SLC35D1 (ENSRFEG00010004543)	MIER1 (ENSRFEG00010004493)	DNAI4 (ENSRFEG00010004457)	INSL5 (ENSRFEG00010004442)	DYNLT5 (ENSRFEG00010004431)	SGIP1 (ENSRFEG00010004327)	ENSRFEG00010004239	PDE4B (ENSRFEG00010004177)
Microbat	MODERN SPECIES	1202								ENSMLUG00000009242	ENSMLUG00000012308	ANKRD13C (ENSMLUG00000012297)	ENSMLUG00000006203	LRRC40 (ENSMLUG00000006177)	ENSMLUG00000001932	ENSMLUG00000025008	DEPDC1 (ENSMLUG00000012890) #21	RPE65 (ENSMLUG00000012887) #22	WLS (ENSMLUG00000016857) #23
Megabat	MODERN SPECIES	105																RPE65 (ENSPVAG00000015547) #22	WLS (ENSPVAG00000015543) #23
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182913.B #22
Common shrew	MODERN SPECIES	1281																RPE65 (ENSSARG00000011313) #22
Hedgehog	MODERN SPECIES	1835																RPE65 (ENSEEUG00000012380) #22
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00530000064485	ENSGT00940000167450	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404.d	ENSGT00940000159289	ENSGT00730000111078.j.b	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Xenarthra	ANCESTRAL SPECIES	39								ENSGT00730000111078.i	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Armadillo	MODERN SPECIES	4628							ZRANB2 (ENSDNOG00000010455)	PTGER3 (ENSDNOG00000010437)	CTH (ENSDNOG00000045200)	ENSDNOG00000046207	ANKRD13C (ENSDNOG00000005594)	SRSF11 (ENSDNOG00000008603)	LRRC40 (ENSDNOG00000001807)	LRRC7 (ENSDNOG00000001801)	DEPDC1 (ENSDNOG00000040135) #21	RPE65 (ENSDNOG00000037707) #22	WLS (ENSDNOG00000003500) #23	DIRAS3 (ENSDNOG00000039860)	GNG12 (ENSDNOG00000040556)	GADD45A (ENSDNOG00000038488)	SERBP1 (ENSDNOG00000014249)	IL12RB2 (ENSDNOG00000007767)	IL23R (ENSDNOG00000008682)	C1orf141 (ENSDNOG00000031369)	SLC35D1 (ENSDNOG00000013582)	ENSDNOG00000013550	DNAI4 (ENSDNOG00000015107)	INSL5 (ENSDNOG00000045210)	DYNLT5 (ENSDNOG00000039350)	SGIP1 (ENSDNOG00000015078)	PDE4B (ENSDNOG00000034108)
Sloth	MODERN SPECIES	7882																ENSCHOG00000001635 #22
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078.j.b	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Tenrec	MODERN SPECIES	1744																RPE65 (ENSETEG00000014004) #22
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078.j.b	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00390000005897 #23	ENSGT00940000164094	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Elephant	MODERN SPECIES	145	LHX8 (ENSLAFG00000015040)	TYW3 (ENSLAFG00000011373)	CRYZ (ENSLAFG00000011371)	ENSLAFG00000011360	TNNI3K (ENSLAFG00000011342)	FPGT (ENSLAFG00000027887)	ENSLAFG00000003594	ZRANB2 (ENSLAFG00000017760)	PTGER3 (ENSLAFG00000018598)	CTH (ENSLAFG00000018687)	ANKRD13C (ENSLAFG00000015894)	SRSF11 (ENSLAFG00000015882)	LRRC40 (ENSLAFG00000004632)	LRRC7 (ENSLAFG00000021807)	DEPDC1 (ENSLAFG00000013772) #21	RPE65 (ENSLAFG00000018223) #22	WLS (ENSLAFG00000022046) #23	ENSLAFG00000002162	GNG12 (ENSLAFG00000003240)	GADD45A (ENSLAFG00000009362)	ENSLAFG00000000012	IL12RB2 (ENSLAFG00000000010)	ENSLAFG00000030915	IL23R (ENSLAFG00000017639)	ENSLAFG00000022401	SLC35D1 (ENSLAFG00000015854)	MIER1 (ENSLAFG00000015842)	DNAI4 (ENSLAFG00000015831)	ENSLAFG00000015826	DYNLT5 (ENSLAFG00000015819)	SGIP1 (ENSLAFG00000015802)
Hyrax	MODERN SPECIES	1403																ENSPCAG00000006115 #22
Marsupialia	ANCESTRAL SPECIES	37	ENSGT00940000167450	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872
Marsupialia_b	ANCESTRAL SPECIES	33	ENSGT00940000159131	ENSGT00940000167450	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872
Diprotodontia	ANCESTRAL SPECIES	69	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872
Diprotodontia_a	ANCESTRAL SPECIES	52	ENSGT00940000167450	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT01000000214430.a.a.a.c.a.a.a	ENSGT00950000182991.B	ENSGT00940000162423.a	ENSGT00940000160640	ENSGT00940000156823.e	ENSGT00390000017010	ENSGT00550000074944
Common wonbat	MODERN SPECIES	1040	ENSVURG00010013013	FPGT (ENSVURG00010013015)	ENSVURG00010013021	NEGR1 (ENSVURG00010013039)	ZRANB2 (ENSVURG00010013054)	PTGER3 (ENSVURG00010013077)	ENSVURG00010013108	CTH (ENSVURG00010013113)	ANKRD13C (ENSVURG00010013121)	SRSF11 (ENSVURG00010013206)	ENSVURG00010013222	LRRC40 (ENSVURG00010013229)	ENSVURG00010013244	ENSVURG00010013254	DEPDC1 (ENSVURG00010013276) #21	RPE65 (ENSVURG00010013292) #22	ENSVURG00010013301	WLS (ENSVURG00010013312) #23	ENSVURG00010013330	GNG12 (ENSVURG00010013343)	GADD45A (ENSVURG00010013352)	SERBP1 (ENSVURG00010013378)	ENSVURG00010013710	ENSVURG00010014051	ENSVURG00010014058	SLC35D1 (ENSVURG00010014063)	MIER1 (ENSVURG00010014081)	DNAI4 (ENSVURG00010014101)	DYNLT5 (ENSVURG00010014110)	ENSVURG00010014117	ENSVURG00010014127
koala	MODERN SPECIES	49						NEGR1 (ENSPCIG00000035617)	ZRANB2 (ENSPCIG00000001426)	PTGER3 (ENSPCIG00000001445)	CTH (ENSPCIG00000002022)	ANKRD13C (ENSPCIG00000002059)	SRSF11 (ENSPCIG00000002083)	LRRC40 (ENSPCIG00000002115)	ENSPCIG00000002303	ENSPCIG00000036862	DEPDC1 (ENSPCIG00000021948) #21	RPE65 (ENSPCIG00000021949) #22	ENSPCIG00000021951	WLS (ENSPCIG00000021952) #23	ENSPCIG00000021954	GNG12 (ENSPCIG00000035012)	ENSPCIG00000028889	SERBP1 (ENSPCIG00000028893)	ENSPCIG00000028896	ENSPCIG00000028903	ENSPCIG00000028905	SLC35D1 (ENSPCIG00000028909)	MIER1 (ENSPCIG00000028911)	DNAI4 (ENSPCIG00000028913)	DYNLT5 (ENSPCIG00000028915)	ENSPCIG00000028924	PDE4B (ENSPCIG00000019187)
Wallaby	MODERN SPECIES	2567																RPE65 (ENSMEUG00000010688) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000003449	TNNI3K (ENSSHAG00000005927)	ENSSHAG00000029221	FPGT (ENSSHAG00000002948)	ENSSHAG00000027433	NEGR1 (ENSSHAG00000020827)	ENSSHAG00000008054	ENSSHAG00000029066	CTH (ENSSHAG00000011509)	ANKRD13C (ENSSHAG00000011987)	SRSF11 (ENSSHAG00000026078)	LRRC40 (ENSSHAG00000012381)	LRRC7 (ENSSHAG00000012908)	ENSSHAG00000016708	DEPDC1 (ENSSHAG00000016831) #21	RPE65 (ENSSHAG00000016895) #22	ENSSHAG00000016940	WLS (ENSSHAG00000017285) #23	ENSSHAG00000024943	GADD45A (ENSSHAG00000031870)	SERBP1 (ENSSHAG00000026754)	ENSSHAG00000007683	ENSSHAG00000006594	ENSSHAG00000024280	SLC35D1 (ENSSHAG00000020598)	MIER1 (ENSSHAG00000021949)	DNAI4 (ENSSHAG00000001312)	ENSSHAG00000003559	DYNLT5 (ENSSHAG00000022608)	SGIP1 (ENSSHAG00000004465)	PDE4B (ENSSHAG00000002088)
Opossum	MODERN SPECIES	1	GTF2B (ENSMODG00000012414)	PKN2 (ENSMODG00000012423)	ENSMODG00000000298	TNNI3K (ENSMODG00000000344)	ENSMODG00000000352	FPGT (ENSMODG00000047758)	ENSMODG00000025652	ENSMODG00000000356	NEGR1 (ENSMODG00000000482)	ZRANB2 (ENSMODG00000000504)	ENSMODG00000025217	ANKRD13C (ENSMODG00000000531)	LRRC40 (ENSMODG00000000604)	LRRC7 (ENSMODG00000000649)	DEPDC1 (ENSMODG00000000686) #21	RPE65 (ENSMODG00000000710) #22	ENSMODG00000000721	ENSMODG00000040341	WLS (ENSMODG00000000754) #23	ENSMODG00000000766	GNG12 (ENSMODG00000000771)	GADD45A (ENSMODG00000000788)	SERBP1 (ENSMODG00000000802)	ENSMODG00000000859	ENSMODG00000000877	ENSMODG00000049167	ENSMODG00000000883	DNAI4 (ENSMODG00000000951)	ENSMODG00000038287	DYNLT5 (ENSMODG00000042313)	SGIP1 (ENSMODG00000001029)
Platypus	MODERN SPECIES	9	ENSOANG00000038598	DHX15 (ENSOANG00000006682)	PPARGC1A (ENSOANG00000006680)	GBA3 (ENSOANG00000006679)	ADGRA3 (ENSOANG00000006677)	KCNIP4 (ENSOANG00000006672)	ENSOANG00000006671	SLIT2 (ENSOANG00000006668)	ENSOANG00000006667	NCAPG (ENSOANG00000006664)	ENSOANG00000006663	MED28 (ENSOANG00000047599)	LAP3 (ENSOANG00000006661)	CLRN2 (ENSOANG00000039129)	DEPDC1 (ENSOANG00000006658) #21	RPE65 (ENSOANG00000006656) #22	WLS (ENSOANG00000007764) #23	DIRAS2 (ENSOANG00000042492)	GNG12 (ENSOANG00000049237)	ENSOANG00000007766	SERBP1 (ENSOANG00000007767)	ENSOANG00000007768	ENSOANG00000007769	ENSOANG00000028430	SLC35D1 (ENSOANG00000041668)	MIER1 (ENSOANG00000012768)	DNAI4 (ENSOANG00000007145)	DYNLT5 (ENSOANG00000047513)	ENSOANG00000006856	PDE4B (ENSOANG00000037786)	ENSOANG00000000396
Sauria	ANCESTRAL SPECIES	7	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Archosauria	ANCESTRAL SPECIES	11	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000169329	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00910000148470	ENSGT00730000110872.b.d	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Aves	ANCESTRAL SPECIES	7	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000160050.l	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000160050.l	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000160185	ENSGT00940000156301.g	ENSGT00940000156301.h	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a
Duck	MODERN SPECIES	26	TYW3 (ENSAPLG00000019658)	CRYZ (ENSAPLG00000012367)	ENSAPLG00000012188	ENSAPLG00000023419	FPGT (ENSAPLG00000021822)	ENSAPLG00000027128	NEGR1 (ENSAPLG00000011651)	ZRANB2 (ENSAPLG00000011345)	PTGER3 (ENSAPLG00000019095)	CTH (ENSAPLG00000010832)	ANKRD13C (ENSAPLG00000010438)	SRSF11 (ENSAPLG00000010241)	LRRC40 (ENSAPLG00000009971)	LRRC7 (ENSAPLG00000009688)	DEPDC1 (ENSAPLG00000002417) #21	RPE65 (ENSAPLG00000015511) #22	ENSAPLG00000015331	WLS (ENSAPLG00000014906) #23	ENSAPLG00000025200	GNG12 (ENSAPLG00000022574)	SERBP1 (ENSAPLG00000023710)	IL12RB2 (ENSAPLG00000008716)	MIER1 (ENSAPLG00000008492)	DNAI4 (ENSAPLG00000008177)	ENSAPLG00000008053	ENSAPLG00000021413	PDE4B (ENSAPLG00000007240)	LEPR (ENSAPLG00000015902)	LEPROT (ENSAPLG00000029613)	DNAJC6 (ENSAPLG00000015954)	ENSAPLG00000007058
Pink-footed goose	MODERN SPECIES	1	LHX8 (ENSABRG00000017466)	TYW3 (ENSABRG00000017491)	CRYZ (ENSABRG00000017502)	ENSABRG00000017532	TNNI3K (ENSABRG00000017567)	FPGT (ENSABRG00000017593)	NEGR1 (ENSABRG00000017634)	ZRANB2 (ENSABRG00000017652)	PTGER3 (ENSABRG00000017654)	CTH (ENSABRG00000017657)	ANKRD13C (ENSABRG00000017661)	SRSF11 (ENSABRG00000017665)	LRRC40 (ENSABRG00000017671)	LRRC7 (ENSABRG00000017686)	DEPDC1 (ENSABRG00000017766) #21	RPE65 (ENSABRG00000017792) #22	ENSABRG00000017842	WLS (ENSABRG00000017850) #23	ENSABRG00000017860	GNG12 (ENSABRG00000017870)	ENSABRG00000017872	IL12RB2 (ENSABRG00000017873)	ENSABRG00000017881	SLC35D1 (ENSABRG00000017890)	MIER1 (ENSABRG00000017904)	DNAI4 (ENSABRG00000017938)	DYNLT5 (ENSABRG00000017970)	SGIP1 (ENSABRG00000018020)	PDE4B (ENSABRG00000018047)	ENSABRG00000018063	LEPR (ENSABRG00000018132)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000160050.l	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Japanese quail	MODERN SPECIES	26	TYW3 (ENSCJPG00005014535)	CRYZ (ENSCJPG00005014534)	ENSCJPG00005014533	TNNI3K (ENSCJPG00005014532)	FPGT (ENSCJPG00005014531)	NEGR1 (ENSCJPG00005014529)	ZRANB2 (ENSCJPG00005014528)	PTGER3 (ENSCJPG00005014527)	CTH (ENSCJPG00005014526)	ANKRD13C (ENSCJPG00005014525)	ENSCJPG00005014524	SRSF11 (ENSCJPG00005014523)	LRRC40 (ENSCJPG00005014522)	LRRC7 (ENSCJPG00005014521)	DEPDC1 (ENSCJPG00005014520) #21	RPE65 (ENSCJPG00005014519) #22	ENSCJPG00005014518	WLS (ENSCJPG00005014517) #23	GNG12 (ENSCJPG00005014515)	GADD45A (ENSCJPG00005014514)	SERBP1 (ENSCJPG00005014513)	ENSCJPG00005014511	IL12RB2 (ENSCJPG00005014510)	SLC35D1 (ENSCJPG00005014509)	MIER1 (ENSCJPG00005014508)	DNAI4 (ENSCJPG00005014507)	ENSCJPG00005014506	DYNLT5 (ENSCJPG00005014505)	SGIP1 (ENSCJPG00005014504)	PDE4B (ENSCJPG00005014503)	LEPR (ENSCJPG00005014502)
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000160050.l	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00990000204555	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Chicken	MODERN SPECIES	37	TYW3 (ENSGALG00010024017)	CRYZ (ENSGALG00010024016)	ERICH3 (ENSGALG00010024003)	TNNI3K (ENSGALG00010023987)	FPGT (ENSGALG00010023962)	ENSGALG00010023958	NEGR1 (ENSGALG00010023942)	ZRANB2 (ENSGALG00010023917)	PTGER3 (ENSGALG00010023902)	CTH (ENSGALG00010023888)	ANKRD13C (ENSGALG00010023704)	SRSF11 (ENSGALG00010023693)	LRRC40 (ENSGALG00010023641)	LRRC7 (ENSGALG00010023606)	DEPDC1 (ENSGALG00010023574) #21	RPE65 (ENSGALG00010023506) #22	MCCC2L (ENSGALG00010023479)	WLS (ENSGALG00010023422) #23	GNG12 (ENSGALG00010023389)	GADD45A (ENSGALG00010023362)	SERBP1 (ENSGALG00010023282)	IL12RB2 (ENSGALG00010023249)	ENSGALG00010023235	SLC35D1 (ENSGALG00010023216)	MIER1 (ENSGALG00010023186)	DNAI4 (ENSGALG00010023145)	DYNLT5 (ENSGALG00010023130)	SGIP1 (ENSGALG00010022848)	PDE4B (ENSGALG00010027081)	ENSGALG00010024171	LEPR (ENSGALG00010024165)
Turkey	MODERN SPECIES	1	LEPR (ENSMGAG00000011860)	ENSMGAG00000020412	ENSMGAG00000011887	SGIP1 (ENSMGAG00000011892)	ENSMGAG00000011919	ENSMGAG00000018497	ENSMGAG00000020952	ENSMGAG00000018019	ENSMGAG00000011946	ENSMGAG00000011935	IL12RB2 (ENSMGAG00000011967)	SERBP1 (ENSMGAG00000011975)	ENSMGAG00000011997	ENSMGAG00000011990	WLS (ENSMGAG00000011999) #23	ENSMGAG00000012017 #22	ENSMGAG00000012008	DEPDC1 (ENSMGAG00000012027) #21	ENSMGAG00000012059	ENSMGAG00000012039	ENSMGAG00000020025	ENSMGAG00000012091	ENSMGAG00000017585	ENSMGAG00000012072	CTH (ENSMGAG00000012103)	ENSMGAG00000012116	ENSMGAG00000012121	ENSMGAG00000022575	ENSMGAG00000012138	ENSMGAG00000012127	CRYZ (ENSMGAG00000012143)
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00910000148470	ENSGT00730000110872.b.d	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00950000183297
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00910000148470	ENSGT00730000110872.b.d	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00950000183297
Great tit	MODERN SPECIES	28	LHX8 (ENSPMJG00000013067)	TYW3 (ENSPMJG00000013065)	CRYZ (ENSPMJG00000013063)	ENSPMJG00000013061	TNNI3K (ENSPMJG00000013058)	FPGT (ENSPMJG00000013057)	NEGR1 (ENSPMJG00000013053)	ENSPMJG00000013051	PTGER3 (ENSPMJG00000013049)	LRRC7 (ENSPMJG00000012697)	LRRC40 (ENSPMJG00000012696)	ENSPMJG00000012695	SRSF11 (ENSPMJG00000012694)	ANKRD13C (ENSPMJG00000012634)	DEPDC1 (ENSPMJG00000012631) #21	RPE65 (ENSPMJG00000012367) #22	ENSPMJG00000012366	WLS (ENSPMJG00000012364) #23	ENSPMJG00000012363	GNG12 (ENSPMJG00000012362)	GADD45A (ENSPMJG00000012361)	SERBP1 (ENSPMJG00000012358)	ENSPMJG00000012357	ENSPMJG00000012356	SLC35D1 (ENSPMJG00000012355)	MIER1 (ENSPMJG00000012354)	DNAI4 (ENSPMJG00000012353)	ENSPMJG00000012352	DYNLT5 (ENSPMJG00000012351)	SGIP1 (ENSPMJG00000012350)	PDE4B (ENSPMJG00000012349)
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.g.b	ENSGT00520000055591.a.h	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Flycatcher	MODERN SPECIES	27	TNNI3K (ENSFALG00000001130)	FPGT (ENSFALG00000001123)	ENSFALG00000023391	ENSFALG00000025815	ENSFALG00000026319	ENSFALG00000023525	NEGR1 (ENSFALG00000001249)	ZRANB2 (ENSFALG00000001242)	ENSFALG00000023205	LRRC7 (ENSFALG00000001237)	LRRC40 (ENSFALG00000001226)	SRSF11 (ENSFALG00000001217)	ANKRD13C (ENSFALG00000028454)	ENSFALG00000013034	DEPDC1 (ENSFALG00000013009) #21	RPE65 (ENSFALG00000012996) #22	ENSFALG00000012976	WLS (ENSFALG00000012942) #23	ENSFALG00000023313	GNG12 (ENSFALG00000012927)	SERBP1 (ENSFALG00000028513)	ENSFALG00000020272	SLC35D1 (ENSFALG00000012853)	MIER1 (ENSFALG00000012825)	DNAI4 (ENSFALG00000012813)	ENSFALG00000014310	SGIP1 (ENSFALG00000012810)	ENSFALG00000012778	ENSFALG00000028654	ENSFALG00000025173	LEPR (ENSFALG00000012729)
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312.q	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00390000000312.r	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.g.b	ENSGT00520000055591.a.h	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00990000204555	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Medium ground finch	MODERN SPECIES	255										ENSGFOG00000003031	LRRC40 (ENSGFOG00000002823)	SRSF11 (ENSGFOG00000002786)	ANKRD13C (ENSGFOG00000002747)	ENSGFOG00000002560	DEPDC1 (ENSGFOG00000002468) #21	RPE65 (ENSGFOG00000014807) #22	ENSGFOG00000014806	WLS (ENSGFOG00000014805) #23	ENSGFOG00000014804	GNG12 (ENSGFOG00000014803)	SERBP1 (ENSGFOG00000014802)	ENSGFOG00000014800	SLC35D1 (ENSGFOG00000014799)	MIER1 (ENSGFOG00000014798)	DNAI4 (ENSGFOG00000014797)	ENSGFOG00000014796	DYNLT5 (ENSGFOG00000014795)	SGIP1 (ENSGFOG00000014794)	PDE4B (ENSGFOG00000014783)	LEPR (ENSGFOG00000014775)	LEPROT (ENSGFOG00000014770)
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000153304.C	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312.q	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.g.b	ENSGT00520000055591.a.h	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00990000204555	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301
Common canary	MODERN SPECIES	9	TYW3 (ENSSCAG00000008317)	CRYZ (ENSSCAG00000008310)	TNNI3K (ENSSCAG00000008178)	FPGT (ENSSCAG00000008071)	ENSSCAG00000008056	ENSSCAG00000008053	NEGR1 (ENSSCAG00000008047)	ENSSCAG00000008038	ZRANB2 (ENSSCAG00000008035)	CTH (ENSSCAG00000007952)	ANKRD13C (ENSSCAG00000007923)	ENSSCAG00000007914	SRSF11 (ENSSCAG00000007908)	LRRC40 (ENSSCAG00000007651)	LRRC7 (ENSSCAG00000007607)	ENSSCAG00000007605 #22	DEPDC1 (ENSSCAG00000007602) #21	ENSSCAG00000007598	ENSSCAG00000007591	WLS (ENSSCAG00000007589) #23	ENSSCAG00000007587	GNG12 (ENSSCAG00000007586)	SERBP1 (ENSSCAG00000007585)	ENSSCAG00000007581	SLC35D1 (ENSSCAG00000007571)	MIER1 (ENSSCAG00000007527)	ENSSCAG00000007520	ENSSCAG00000007516	DYNLT5 (ENSSCAG00000007509)	SGIP1 (ENSSCAG00000007499)	PDE4B (ENSSCAG00000007072)
Zebra finch	MODERN SPECIES	30	LHX8 (ENSTGUG00000010411)	CRYZ (ENSTGUG00000010402)	TYW3 (ENSTGUG00000027800)	ENSTGUG00000023680	TNNI3K (ENSTGUG00000010382)	FPGT (ENSTGUG00000024062)	ENSTGUG00000010364	ENSTGUG00000022821	ENSTGUG00000025601	ENSTGUG00000019662	ENSTGUG00000026580	SRSF11 (ENSTGUG00000026513)	ENSTGUG00000026570	ENSTGUG00000010266	ENSTGUG00000010258 #21	RPE65 (ENSTGUG00000010240) #22	ENSTGUG00000010227	ENSTGUG00000018956 #23	DIRAS3 (ENSTGUG00000026090)	ENSTGUG00000028084	ENSTGUG00000021708	ENSTGUG00000022830	ENSTGUG00000022177	ENSTGUG00000025177	ENSTGUG00000027339	ENSTGUG00000021508	ENSTGUG00000010160	ENSTGUG00000029074	ENSTGUG00000025877	ENSTGUG00000010065	ENSTGUG00000019287
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00990000204555	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209
Kakapo	MODERN SPECIES	25	LHX8 (ENSSHBG00005006538)	TYW3 (ENSSHBG00005006522)	CRYZ (ENSSHBG00005006508)	ENSSHBG00005006455	TNNI3K (ENSSHBG00005006410)	FPGT (ENSSHBG00005006383)	NEGR1 (ENSSHBG00005006353)	ZRANB2 (ENSSHBG00005006322)	PTGER3 (ENSSHBG00005006310)	CTH (ENSSHBG00005006295)	ANKRD13C (ENSSHBG00005006277)	SRSF11 (ENSSHBG00005006243)	LRRC40 (ENSSHBG00005006229)	LRRC7 (ENSSHBG00005005421)	DEPDC1 (ENSSHBG00005005262) #21	RPE65 (ENSSHBG00005005243) #22	ENSSHBG00005005218	WLS (ENSSHBG00005000693) #23	ENSSHBG00005015678	GNG12 (ENSSHBG00005015675)	GADD45A (ENSSHBG00005015670)	SERBP1 (ENSSHBG00005015665)	ENSSHBG00005015653	IL23R (ENSSHBG00005015646)	SLC35D1 (ENSSHBG00005015635)	MIER1 (ENSSHBG00005015551)	ENSSHBG00005015538	ENSSHBG00005015535	ENSSHBG00005015532	DYNLT5 (ENSSHBG00005015529)	SGIP1 (ENSSHBG00005015507)
Golden eagle	MODERN SPECIES	3	LHX8 (ENSACCG00020012766)	TYW3 (ENSACCG00020012740)	CRYZ (ENSACCG00020012699)	TNNI3K (ENSACCG00020012633)	FPGT (ENSACCG00020012607)	NEGR1 (ENSACCG00020012583)	ZRANB2 (ENSACCG00020012561)	PTGER3 (ENSACCG00020012543)	CTH (ENSACCG00020012509)	ANKRD13C (ENSACCG00020012479)	ENSACCG00020012455	SRSF11 (ENSACCG00020012425)	LRRC40 (ENSACCG00020012379)	LRRC7 (ENSACCG00020012302)	DEPDC1 (ENSACCG00020012143) #21	RPE65 (ENSACCG00020012097) #22	ENSACCG00020011949	WLS (ENSACCG00020011917) #23	ENSACCG00020011874	GNG12 (ENSACCG00020011821)	GADD45A (ENSACCG00020011721)	SERBP1 (ENSACCG00020011670)	IL12RB2 (ENSACCG00020011596)	IL23R (ENSACCG00020011546)	SLC35D1 (ENSACCG00020011522)	MIER1 (ENSACCG00020011496)	DNAI4 (ENSACCG00020011470)	DYNLT5 (ENSACCG00020017054)	SGIP1 (ENSACCG00020017053)	ENSACCG00020017052	ENSACCG00020017051
African ostrich	MODERN SPECIES	220						ENSSCUG00000004287	ENSSCUG00000004285	PTGER3 (ENSSCUG00000004284)	CTH (ENSSCUG00000004282)	ANKRD13C (ENSSCUG00000004280)	SRSF11 (ENSSCUG00000004279)	LRRC40 (ENSSCUG00000004277)	ENSSCUG00000004276	LRRC7 (ENSSCUG00000004275)	DEPDC1 (ENSSCUG00000004271) #21	RPE65 (ENSSCUG00000004270) #22	ENSSCUG00000004269	ENSSCUG00000004267 #23	ENSSCUG00000004266 #23	ENSSCUG00000004265	GNG12 (ENSSCUG00000004262)	SERBP1 (ENSSCUG00000004259)	IL12RB2 (ENSSCUG00000004258)	SLC35D1 (ENSSCUG00000004256)	MIER1 (ENSSCUG00000004254)	DNAI4 (ENSSCUG00000004248)	ENSSCUG00000004247	ENSSCUG00000004241	PDE4B (ENSSCUG00000004240)	ENSSCUG00000004237	LEPR (ENSSCUG00000004230)
Australian saltwater crocodile	MODERN SPECIES	28	CRYZ (ENSCPRG00005012967)	ENSCPRG00005012963	TNNI3K (ENSCPRG00005012924)	FPGT (ENSCPRG00005012901)	ENSCPRG00005012898	ENSCPRG00005012892	NEGR1 (ENSCPRG00005012872)	ZRANB2 (ENSCPRG00005012850)	PTGER3 (ENSCPRG00005012835)	CTH (ENSCPRG00005012796)	ANKRD13C (ENSCPRG00005012782)	SRSF11 (ENSCPRG00005012756)	LRRC40 (ENSCPRG00005012320)	LRRC7 (ENSCPRG00005011919)	DEPDC1 (ENSCPRG00005011831) #21	RPE65 (ENSCPRG00005011721) #22	ENSCPRG00005011710	WLS (ENSCPRG00005011645) #23	ENSCPRG00005011639	ENSCPRG00005011633	ENSCPRG00005011630	GNG12 (ENSCPRG00005011605)	GADD45A (ENSCPRG00005011603)	SERBP1 (ENSCPRG00005011598)	IL12RB2 (ENSCPRG00005011590)	IL23R (ENSCPRG00005011584)	SLC35D1 (ENSCPRG00005011523)	MIER1 (ENSCPRG00005011341)	DNAI4 (ENSCPRG00005011316)	ENSCPRG00005011307	DYNLT5 (ENSCPRG00005011304)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897.c #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897.c #23	ENSGT00390000005897.d #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190.m.a
Emydidae	ANCESTRAL SPECIES	22	ENSGT00530000064485.e	ENSGT00940000166371	ENSGT00530000064485.f	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897.c #23	ENSGT00390000005897.d #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190.m.a
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	98	ENSTMTG00000008836	ENSTMTG00000008867	ENSTMTG00000008919	ENSTMTG00000008935	ENSTMTG00000008945	ENSTMTG00000008955	ENSTMTG00000008974	ENSTMTG00000008993	ENSTMTG00000009000	ENSTMTG00000009038	SRSF11 (ENSTMTG00000009061)	ENSTMTG00000009091	ENSTMTG00000009112	ENSTMTG00000009190	ENSTMTG00000009545 #21	ENSTMTG00000009586 #22	ENSTMTG00000009639	ENSTMTG00000009688 #23	ENSTMTG00000009792 #23	ENSTMTG00000009811	ENSTMTG00000009824	ENSTMTG00000009844	ENSTMTG00000009876	ENSTMTG00000009954	ENSTMTG00000010078	ENSTMTG00000010362	ENSTMTG00000010406	ENSTMTG00000010442	ENSTMTG00000010523	ENSTMTG00000010570	ENSTMTG00000010614
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000017381	ENSTMTG00000017399	ENSTMTG00000017449	ENSTMTG00000017497	ENSTMTG00000017511	ENSTMTG00000017523	ENSTMTG00000017538	ENSTMTG00000017554	ENSTMTG00000017584	ENSTMTG00000017599	ENSTMTG00000017623	ENSTMTG00000017697	ENSTMTG00000017719	ENSTMTG00000017770	ENSTMTG00000018021 #21	ENSTMTG00000018043 #22	ENSTMTG00000018066	ENSTMTG00000018084 #23	ENSTMTG00000018147 #23	ENSTMTG00000018157	ENSTMTG00000018159	ENSTMTG00000018165	ENSTMTG00000018169	ENSTMTG00000018185	ENSTMTG00000018248	ENSTMTG00000018319	ENSTMTG00000018339	ENSTMTG00000018360	ENSTMTG00000018437	ENSTMTG00000018459	ENSTMTG00000018482
painted turtle	MODERN SPECIES	17	DTWD2 (ENSCPBG00000002009)	SEMA6A (ENSCPBG00000001939)	COMMD10 (ENSCPBG00000001906)	ARL14EPL (ENSCPBG00000001897)	LVRN (ENSCPBG00000001739)	AP3S1 (ENSCPBG00000001702)	ATG12 (ENSCPBG00000001689)	CDO1 (ENSCPBG00000001681)	TMED7 (ENSCPBG00000001673)	ENSCPBG00000001671	FEM1C (ENSCPBG00000001666)	CCDC112 (ENSCPBG00000001651)	PGGT1B (ENSCPBG00000001628)	TRIM36 (ENSCPBG00000001598)	DEPDC1 (ENSCPBG00000001578) #21	RPE65 (ENSCPBG00000001561) #22	ENSCPBG00000001531	WLS (ENSCPBG00000001513) #23	ENSCPBG00000001504	GADD45A (ENSCPBG00000001491)	GNG12 (ENSCPBG00000001480)	SERBP1 (ENSCPBG00000001466)	ENSCPBG00000001453	IL23R (ENSCPBG00000001413)	SLC35D1 (ENSCPBG00000001385)	MIER1 (ENSCPBG00000001361)	DNAI4 (ENSCPBG00000001333)	ENSCPBG00000001269	DYNLT5 (ENSCPBG00000001257)	SGIP1 (ENSCPBG00000001245)	PDE4B (ENSCPBG00000001215)
Testudinidae	ANCESTRAL SPECIES	41	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00910000148470	ENSGT00730000110872.b.c.a	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897.c #23	ENSGT00390000005897.d #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740
Abingdon island giant tortoise	MODERN SPECIES	2857															DEPDC1 (ENSCABG00000002575) #21	RPE65 (ENSCABG00000002577) #22	ENSCABG00000002578	ENSCABG00000002579 #23	ENSCABG00000002581 #23	ENSCABG00000002582	GNG12 (ENSCABG00000002584)	GADD45A (ENSCABG00000002585)	SERBP1 (ENSCABG00000002589)	ENSCABG00000002591	IL23R (ENSCABG00000002595)	SLC35D1 (ENSCABG00000002597)	MIER1 (ENSCABG00000002716)	DNAI4 (ENSCABG00000002719)	ENSCABG00000002727	DYNLT5 (ENSCABG00000002729)	SGIP1 (ENSCABG00000002732)
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005004660	ENSGEVG00005004683	FPGT (ENSGEVG00005004715)	ENSGEVG00005004769	NEGR1 (ENSGEVG00005004829)	ZRANB2 (ENSGEVG00005004867)	PTGER3 (ENSGEVG00005004891)	ENSGEVG00005004912	CTH (ENSGEVG00005004963)	ANKRD13C (ENSGEVG00005005082)	SRSF11 (ENSGEVG00005005134)	ENSGEVG00005005179	LRRC40 (ENSGEVG00005005209)	LRRC7 (ENSGEVG00005005345)	DEPDC1 (ENSGEVG00005005637) #21	RPE65 (ENSGEVG00005005697) #22	ENSGEVG00005005750	ENSGEVG00005005805 #23	ENSGEVG00005005866 #23	ENSGEVG00005005887	GNG12 (ENSGEVG00005005904)	GADD45A (ENSGEVG00005005928)	SERBP1 (ENSGEVG00005005956)	ENSGEVG00005006067	IL23R (ENSGEVG00005006310)	SLC35D1 (ENSGEVG00005006506)	MIER1 (ENSGEVG00005006531)	DNAI4 (ENSGEVG00005006591)	ENSGEVG00005006742	DYNLT5 (ENSGEVG00005006764)	SGIP1 (ENSGEVG00005006796)
Chinese turtle	MODERN SPECIES	1117															DEPDC1 (ENSPSIG00000016431) #21	RPE65 (ENSPSIG00000005421) #22
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
tuatara	MODERN SPECIES	711															DEPDC1 (ENSSPUG00000002519) #21	RPE65 (ENSSPUG00000002488) #22	ENSSPUG00000002472
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a.e	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Common wall lizard	MODERN SPECIES	14	CRYZ (ENSPMRG00000010195)	ENSPMRG00000010206	ENSPMRG00000010214	ENSPMRG00000010215	FPGT (ENSPMRG00000010219)	LRRIQ3 (ENSPMRG00000010225)	NEGR1 (ENSPMRG00000010238)	ENSPMRG00000010246	ZRANB2 (ENSPMRG00000010249)	PTGER3 (ENSPMRG00000010253)	CTH (ENSPMRG00000010257)	ANKRD13C (ENSPMRG00000010264)	SRSF11 (ENSPMRG00000010271)	LRRC40 (ENSPMRG00000010276)	LRRC7 (ENSPMRG00000010305)	RPE65 (ENSPMRG00000010368) #22	ENSPMRG00000010374	WLS (ENSPMRG00000010394) #23	ENSPMRG00000010420	GNG12 (ENSPMRG00000010424)	GADD45A (ENSPMRG00000010434)	SERBP1 (ENSPMRG00000010448)	ENSPMRG00000010456	ENSPMRG00000010463	SLC35D1 (ENSPMRG00000010473)	MIER1 (ENSPMRG00000010482)	DNAI4 (ENSPMRG00000010489)	ENSPMRG00000010509	DYNLT5 (ENSPMRG00000010514)	SGIP1 (ENSPMRG00000010549)	PDE4B (ENSPMRG00000010762)
Argentine black and white tegu	MODERN SPECIES	31	CRYZ (ENSSMRG00000020158)	ENSSMRG00000020155	ENSSMRG00000020153	TNNI3K (ENSSMRG00000020151)	FPGT (ENSSMRG00000020149)	ENSSMRG00000020147	NEGR1 (ENSSMRG00000020096)	ZRANB2 (ENSSMRG00000020094)	PTGER3 (ENSSMRG00000020093)	CTH (ENSSMRG00000020092)	ANKRD13C (ENSSMRG00000020091)	SRSF11 (ENSSMRG00000020090)	LRRC40 (ENSSMRG00000020088)	LRRC7 (ENSSMRG00000020087)	DEPDC1 (ENSSMRG00000020085) #21	RPE65 (ENSSMRG00000019976) #22	ENSSMRG00000019975	WLS (ENSSMRG00000019974) #23	ENSSMRG00000019973	GNG12 (ENSSMRG00000019972)	GADD45A (ENSSMRG00000019971)	ENSSMRG00000019970	ENSSMRG00000019969	IL23R (ENSSMRG00000019968)	SLC35D1 (ENSSMRG00000019967)	MIER1 (ENSSMRG00000019966)	DNAI4 (ENSSMRG00000019965)	INSL5 (ENSSMRG00000019962)	DYNLT5 (ENSSMRG00000019961)	SGIP1 (ENSSMRG00000019959)	PDE4B (ENSSMRG00000019958)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000236550	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Elapidae	ANCESTRAL SPECIES	1	ENSGT00530000064485	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00940000162903.f.f.a	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000236550	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00940000154882.q	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00940000162903.f.f.a	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00940000156968.g	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT00940000158196.`b.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000236550	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00940000154882.q	ENSGT00940000166371	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00940000162903.f.f.a	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.d	ENSGT00940000156968.g	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT00940000158196.`b.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000236550	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190
Mainland tiger snake	MODERN SPECIES	13													LRRC40 (ENSNSUG00000003611)	LRRC7 (ENSNSUG00000003590)	DEPDC1 (ENSNSUG00000003580) #21	RPE65 (ENSNSUG00000003575) #22	ENSNSUG00000003568	WLS (ENSNSUG00000003556) #23	ENSNSUG00000003548	GNG12 (ENSNSUG00000003545)	GADD45A (ENSNSUG00000003540)	SERBP1 (ENSNSUG00000003529)	ENSNSUG00000003522	IL23R (ENSNSUG00000003518)	SLC35D1 (ENSNSUG00000003478)	MIER1 (ENSNSUG00000003472)	DNAI4 (ENSNSUG00000003467)	ENSNSUG00000003463	DYNLT5 (ENSNSUG00000003455)	SGIP1 (ENSNSUG00000003440)	ENSNSUG00000003431
Eastern brown snake	MODERN SPECIES	13	CRYZ (ENSPTXG00000006515)	ENSPTXG00000006514	TNNI3K (ENSPTXG00000006513)	FPGT (ENSPTXG00000006512)	ENSPTXG00000006511	NEGR1 (ENSPTXG00000006509)	ZRANB2 (ENSPTXG00000006508)	PTGER3 (ENSPTXG00000006507)	CTH (ENSPTXG00000006506)	ENSPTXG00000006504	ANKRD13C (ENSPTXG00000006503)	SRSF11 (ENSPTXG00000006502)	ENSPTXG00000006501	LRRC7 (ENSPTXG00000006477)	DEPDC1 (ENSPTXG00000006476) #21	RPE65 (ENSPTXG00000006475) #22	ENSPTXG00000006474	WLS (ENSPTXG00000006473) #23	ENSPTXG00000006472	GNG12 (ENSPTXG00000006471)	GADD45A (ENSPTXG00000006470)	SERBP1 (ENSPTXG00000006469)	IL23R (ENSPTXG00000006468)	SLC35D1 (ENSPTXG00000006467)	MIER1 (ENSPTXG00000006465)	DNAI4 (ENSPTXG00000006463)	ENSPTXG00000006462	DYNLT5 (ENSPTXG00000006461)	SGIP1 (ENSPTXG00000006460)	PDE4B (ENSPTXG00000005764)
Blue-lipped sea krait	MODERN SPECIES	9846															DEPDC1 (ENSLLTG00000013828) #21	RPE65 (ENSLLTG00000013835) #22
Indian cobra	MODERN SPECIES	2	TNNI3K (ENSNNAG00000000837)	ENSNNAG00000000815	ENSNNAG00000000805	ENSNNAG00000000794	NEGR1 (ENSNNAG00000000786)	ZRANB2 (ENSNNAG00000000772)	PTGER3 (ENSNNAG00000000759)	ENSNNAG00000000739	CTH (ENSNNAG00000000711)	ENSNNAG00000000687	ANKRD13C (ENSNNAG00000018083)	SRSF11 (ENSNNAG00000018081)	LRRC40 (ENSNNAG00000018063)	LRRC7 (ENSNNAG00000017992)	DEPDC1 (ENSNNAG00000017965) #21	RPE65 (ENSNNAG00000017920) #22	ENSNNAG00000017913	WLS (ENSNNAG00000017910) #23	ENSNNAG00000017909	GNG12 (ENSNNAG00000017908)	GADD45A (ENSNNAG00000017907)	SERBP1 (ENSNNAG00000017906)	ENSNNAG00000017905	ENSNNAG00000017903	SLC35D1 (ENSNNAG00000017902)	MIER1 (ENSNNAG00000017900)	DNAI4 (ENSNNAG00000017898)	ENSNNAG00000017897	DYNLT5 (ENSNNAG00000017896)	SGIP1 (ENSNNAG00000017887)	PDE4B (ENSNNAG00000017882)
Lizard	MODERN SPECIES	942									CTH (ENSACAG00000013510)	ANKRD13C (ENSACAG00000013605)	SRSF11 (ENSACAG00000013654)	LRRC40 (ENSACAG00000013810)	LRRC7 (ENSACAG00000011058)	ENSACAG00000043413	DEPDC1 (ENSACAG00000011251) #21	RPE65 (ENSACAG00000011404) #22	ENSACAG00000011610	ENSACAG00000035318	WLS (ENSACAG00000011650) #23	ENSACAG00000011819	GNG12 (ENSACAG00000038463)	GADD45A (ENSACAG00000011832)	ENSACAG00000043110
Anura	ANCESTRAL SPECIES	17	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095.i	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00390000005897 #23	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a
Frog	MODERN SPECIES	4	cryz (ENSXETG00000002997)	erich3 (ENSXETG00000002998)	tnni3k (ENSXETG00000024099)	ENSXETG00000040343	ENSXETG00000036702	lrriq3 (ENSXETG00000037102)	negr1 (ENSXETG00000024105)	zranb2 (ENSXETG00000024108)	ptger3 (ENSXETG00000011179)	cth (ENSXETG00000011183)	ankrd13c (ENSXETG00000009602)	srsf11 (ENSXETG00000012371)	lrrc40 (ENSXETG00000012372)	lrrc7 (ENSXETG00000012373)	depdc1 (ENSXETG00000012376) #21	rpe65 (ENSXETG00000012377) #22	XB5906919 [provisional:mccc2] (ENSXETG00000012378)	ENSXETG00000045331	wls (ENSXETG00000012387) #23	diras3 (ENSXETG00000012389)	gng12 (ENSXETG00000045302)	gadd45a (ENSXETG00000012392)	serbp1 (ENSXETG00000012394)	ENSXETG00000043084	ENSXETG00000044095	slc35d1 (ENSXETG00000043386)	mier1 (ENSXETG00000012401)	dnai4 (ENSXETG00000020368)	insl5 (ENSXETG00000036496)	dynlt5 (ENSXETG00000006790)	sgip1 (ENSXETG00000020369)
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000027507	NEGR1 (ENSLLEG00000027422)	ENSLLEG00000027406	ZRANB2 (ENSLLEG00000027360)	PTGER3 (ENSLLEG00000027330)	ENSLLEG00000027312	ENSLLEG00000027303	ENSLLEG00000027274	CTH (ENSLLEG00000026852)	ENSLLEG00000026788	ENSLLEG00000026691	SRSF11 (ENSLLEG00000026455)	LRRC40 (ENSLLEG00000026326)	LRRC7 (ENSLLEG00000025641)	DEPDC1 (ENSLLEG00000025409) #21	RPE65 (ENSLLEG00000024253) #22	ENSLLEG00000023950	WLS (ENSLLEG00000023556) #23	ENSLLEG00000023508	ENSLLEG00000023487	ENSLLEG00000023467	ENSLLEG00000023451	ENSLLEG00000023374	GADD45A (ENSLLEG00000023325)	ENSLLEG00000023300	ENSLLEG00000023073	ENSLLEG00000022915	ENSLLEG00000022648	ENSLLEG00000022555	MIER1 (ENSLLEG00000022252)	DNAI4 (ENSLLEG00000021583)
Coelacanth	MODERN SPECIES	2797															DEPDC1 (ENSLACG00000000070) #21	RPE65 (ENSLACG00000002008) #22	si:ch211-198n5.11 (ENSLACG00000002826)	ENSLACG00000004491	WLS (ENSLACG00000004755) #23	ENSLACG00000006761
Actinopterygii	ANCESTRAL SPECIES	258						ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00510000047658	ENSGT00510000048142
Neopterygii	ANCESTRAL SPECIES	9	ENSGT00940000156348.C	ENSGT00940000158252	ENSGT00530000064273.a.a	ENSGT00940000161527	ENSGT00390000011196	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182913.B.e #22
Osteoglossiformes	ANCESTRAL SPECIES	490																ENSGT00950000182913.B.e #22	ENSGT00950000183047.c.b.n	ENSGT00940000154130.a.a.b.j	ENSGT00730000110988.wb.a	ENSGT00950000182917.a.b.a.e	ENSGT00940000155751.b
Asian bonytongue	MODERN SPECIES	18	MCOLN3 (ENSSFOG00015015628)	mcoln2 (ENSSFOG00015015658)	lpar3 (ENSSFOG00015031106)	ssx2ipa (ENSSFOG00015015720)	GNG5 (ENSSFOG00015015736)	SAMD13 (ENSSFOG00015015773)	prkacbb (ENSSFOG00015031970)	ENSSFOG00015006161	ENSSFOG00015015995	ADGRL2 (ENSSFOG00015015900)	ENSSFOG00015016003	NEGR1 (ENSSFOG00015016028)	ankrd13c (ENSSFOG00015016060)	srsf11 (ENSSFOG00015028943)	LRRC7 (ENSSFOG00015016142)	rpe65a (ENSSFOG00015016305) #22	FNBP1L (ENSSFOG00015016341)	bcar3 (ENSSFOG00015016371)	RNF11 (ENSSFOG00015032136)	TTC39A (ENSSFOG00015016464)	ENSSFOG00015016538	CALR (ENSSFOG00015016553)	OSBPL9 (ENSSFOG00015016718)	abl2 (ENSSFOG00015016784)	CACNA1E (ENSSFOG00015016828)	LHX4 (ENSSFOG00015016940)	ENSSFOG00015027805	xpr1b (ENSSFOG00015016966)	nmnat2 (ENSSFOG00015017019)	ENSSFOG00015017042	lamc1 (ENSSFOG00015017094)
P. kingsleyae	MODERN SPECIES	17	DDAH1 (ENSPKIG00000002698)	ENSPKIG00000002727	SYDE2 (ENSPKIG00000002743)	MCOLN3 (ENSPKIG00000002758)	mcoln2 (ENSPKIG00000002795)	LPAR3 (ENSPKIG00000002840)	ssx2ipa (ENSPKIG00000002857)	gng5 (ENSPKIG00000002879)	SAMD13 (ENSPKIG00000002903)	prkacbb (ENSPKIG00000002931)	ADGRL2 (ENSPKIG00000003040)	ENSPKIG00000003267	ENSPKIG00000003310	ankrd13c (ENSPKIG00000003375)	LRRC7 (ENSPKIG00000003471)	rpe65a (ENSPKIG00000003658) #22	ENSPKIG00000003745	faf1 (ENSPKIG00000003799)	rnf11b (ENSPKIG00000003865)	TTC39A (ENSPKIG00000003907)	ENSPKIG00000004004	itpa (ENSPKIG00000004044)	myoc (ENSPKIG00000004072)	PRRC2C (ENSPKIG00000004107)	ENSPKIG00000004166	fggy (ENSPKIG00000004201)	jun (ENSPKIG00000004257)	IPP (ENSPKIG00000004299)	TMEM69 (ENSPKIG00000004362)	GPBP1L1 (ENSPKIG00000004379)	NASP (ENSPKIG00000004431)
Clupeocephala	ANCESTRAL SPECIES	377						ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000156959.C	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Aplocheiloidei	ANCESTRAL SPECIES	11	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Mangrove rivulus	MODERN SPECIES	88											ENSKMAG00000006037	ZNF830 (ENSKMAG00000005981)	ENSKMAG00000005970	ENSKMAG00000005911	SRSF11 (ENSKMAG00000005868)	rpe65a (ENSKMAG00000005813) #22	RNF11 (ENSKMAG00000005772)	CACNA1E (ENSKMAG00000005669)	KLHL14 (ENSKMAG00000005624)	ENSKMAG00000005603	dtna (ENSKMAG00000005423)	mapre2 (ENSKMAG00000005341)	SPIDR (ENSKMAG00000005268)	cebpd (ENSKMAG00000005255)	mcm4 (ENSKMAG00000005201)	ube2v2 (ENSKMAG00000005178)	snai2 (ENSKMAG00000005164)	SNTG1 (ENSKMAG00000005086)	pcmtd1 (ENSKMAG00000005024)	ST18 (ENSKMAG00000004969)	RB1CC1 (ENSKMAG00000004862)
Turquoise killifish	MODERN SPECIES	1618	ENSNFUG00015023052	MYLK4 (ENSNFUG00015023030)	wrnip1 (ENSNFUG00015023017)	ENSNFUG00015023009	DHX30 (ENSNFUG00015022995)	ENSNFUG00015022990	GPAA1 (ENSNFUG00015022968)	EXOSC4 (ENSNFUG00015022960)	PRKACB (ENSNFUG00015022666)	ENSNFUG00015022643	LPHN2 (ENSNFUG00015021990)	ENSNFUG00015021924	ZNF830 (ENSNFUG00015021922)	ANKRD13C (ENSNFUG00015021904)	SRSF11 (ENSNFUG00015021894)	rpe65a (ENSNFUG00015021762) #22	Nfu_g_1_020184 (ENSNFUG00015021750)	CACNA1E (ENSNFUG00015017202)	KLHL14 (ENSNFUG00015017040)	ENSNFUG00015017029	dtna (ENSNFUG00015016513)	MAPRE2 (ENSNFUG00015016481)	ENSNFUG00015016472	CEBPD (ENSNFUG00015016467)	MCM4 (ENSNFUG00015016361)	ube2v2 (ENSNFUG00015016312)	ENSNFUG00015016310	SNAI2 (ENSNFUG00015016302)	SNTG1 (ENSNFUG00015016268)	PCMTD1 (ENSNFUG00015016259)	ST18 (ENSNFUG00015016175)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000156959.C	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Poecilia	ANCESTRAL SPECIES	16	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
NAME_6	ANCESTRAL SPECIES	11	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000163111.a.b	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Amazon molly	MODERN SPECIES	279	foxf2a (ENSPFOG00000015489)	foxc1a (ENSPFOG00000015487)	MYLK4 (ENSPFOG00000015462)	wrnip1 (ENSPFOG00000015418)	DHX30 (ENSPFOG00000015329)	ENSPFOG00000015263	ENSPFOG00000015253	GPAA1 (ENSPFOG00000015228)	exosc4 (ENSPFOG00000015214)	prkacbb (ENSPFOG00000015181)	ENSPFOG00000015027	ENSPFOG00000014992	ZNF830 (ENSPFOG00000020362)	ENSPFOG00000014942	SRSF11 (ENSPFOG00000014895)	rpe65a (ENSPFOG00000014790) #22	RNF11 (ENSPFOG00000014779)	CACNA1E (ENSPFOG00000014641)	KLHL14 (ENSPFOG00000014609)	ENSPFOG00000014606	dtna (ENSPFOG00000014552)	mapre2 (ENSPFOG00000014482)	cebpd (ENSPFOG00000020361)	ENSPFOG00000014442	mcm4 (ENSPFOG00000014379)	ube2v2 (ENSPFOG00000014363)	snai2 (ENSPFOG00000014336)	SNTG1 (ENSPFOG00000014188)	pcmtd1 (ENSPFOG00000014144)	ST18 (ENSPFOG00000014046)	RB1CC1 (ENSPFOG00000013941)
Sailfin molly	MODERN SPECIES	27												ZNF830 (ENSPLAG00000000208)	ENSPLAG00000009419	ENSPLAG00000009467	SRSF11 (ENSPLAG00000009484)	rpe65a (ENSPLAG00000009531) #22	RNF11 (ENSPLAG00000009544)	CACNA1E (ENSPLAG00000009672)	KLHL14 (ENSPLAG00000009710)	ENSPLAG00000009724	dtna (ENSPLAG00000009736)	mapre2 (ENSPLAG00000009760)	cebpd (ENSPLAG00000009802)	ENSPLAG00000009809	mcm4 (ENSPLAG00000009888)	ube2v2 (ENSPLAG00000009914)	snai2 (ENSPLAG00000009941)	SNTG1 (ENSPLAG00000009987)	pcmtd1 (ENSPLAG00000010014)	ENSPLAG00000010028	RB1CC1 (ENSPLAG00000010111)
Guppy	DUPLICATION
Guppy	MODERN SPECIES	447	ENSPREG00000010073	wrnip1 (ENSPREG00000010059)	ENSPREG00000010050	DHX30 (ENSPREG00000010021)	ENSPREG00000009730	ENSPREG00000009702	GPAA1 (ENSPREG00000009648)	exosc4 (ENSPREG00000009632)	prkacbb (ENSPREG00000009625)	ENSPREG00000009620	ENSPREG00000009210	ENSPREG00000009122	ZNF830 (ENSPREG00000009117)	ENSPREG00000009091	SRSF11 (ENSPREG00000009065)	RPE65 (ENSPREG00000009027) #22	RNF11 (ENSPREG00000009001)	rpe65a (ENSPREG00000008958) #22	RNF11 (ENSPREG00000008943)	KLHL14 (ENSPREG00000008926)	ENSPREG00000008904	ENSPREG00000008889	dtna (ENSPREG00000008725)	mapre2 (ENSPREG00000008676)	SPIDR (ENSPREG00000008640)	cebpd (ENSPREG00000008610)	mcm4 (ENSPREG00000008561)	ube2v2 (ENSPREG00000008536)	SNAI2 (ENSPREG00000008528)	SNTG1 (ENSPREG00000008482)	pcmtd1 (ENSPREG00000008452)
Guppy	MODERN SPECIES	447	ENSPREG00000010050	DHX30 (ENSPREG00000010021)	ENSPREG00000009730	ENSPREG00000009702	GPAA1 (ENSPREG00000009648)	exosc4 (ENSPREG00000009632)	prkacbb (ENSPREG00000009625)	ENSPREG00000009620	ENSPREG00000009210	ENSPREG00000009122	ZNF830 (ENSPREG00000009117)	ENSPREG00000009091	SRSF11 (ENSPREG00000009065)	RPE65 (ENSPREG00000009027) #22	RNF11 (ENSPREG00000009001)	rpe65a (ENSPREG00000008958) #22	RNF11 (ENSPREG00000008943)	KLHL14 (ENSPREG00000008926)	ENSPREG00000008904	ENSPREG00000008889	dtna (ENSPREG00000008725)	mapre2 (ENSPREG00000008676)	SPIDR (ENSPREG00000008640)	cebpd (ENSPREG00000008610)	mcm4 (ENSPREG00000008561)	ube2v2 (ENSPREG00000008536)	SNAI2 (ENSPREG00000008528)	SNTG1 (ENSPREG00000008482)	pcmtd1 (ENSPREG00000008452)	ST18 (ENSPREG00000008337)	RB1CC1 (ENSPREG00000008267)
Platyfish	MODERN SPECIES	20	MYLK4 (ENSXMAG00000016372)	wrnip1 (ENSXMAG00000016362)	ENSXMAG00000016359	DHX30 (ENSXMAG00000016336)	ENSXMAG00000016315	ENSXMAG00000022076	GPAA1 (ENSXMAG00000024682)	exosc4 (ENSXMAG00000016287)	prkacbb (ENSXMAG00000016258)	ENSXMAG00000019206	ENSXMAG00000025254	ENSXMAG00000028770	ZNF830 (ENSXMAG00000020352)	ENSXMAG00000019195	SRSF11 (ENSXMAG00000019180)	rpe65a (ENSXMAG00000019141) #22	RNF11 (ENSXMAG00000029976)	CACNA1E (ENSXMAG00000019132)	KLHL14 (ENSXMAG00000019119)	ENSXMAG00000026128	dtna (ENSXMAG00000019076)	mapre2 (ENSXMAG00000019068)	SPIDR (ENSXMAG00000019057)	cebpd (ENSXMAG00000019437)	mcm4 (ENSXMAG00000019042)	ube2v2 (ENSXMAG00000019038)	snai2 (ENSXMAG00000019030)	SNTG1 (ENSXMAG00000019006)	pcmtd1 (ENSXMAG00000029433)	ST18 (ENSXMAG00000018975)	RB1CC1 (ENSXMAG00000018959)
NAME_4	ANCESTRAL SPECIES	19	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000156959.C	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Mummichog	MODERN SPECIES	314	MYLK4 (ENSFHEG00000014710)	wrnip1 (ENSFHEG00000014687)	ENSFHEG00000014638	DHX30 (ENSFHEG00000014172)	ENSFHEG00000014144	ENSFHEG00000013564	GPAA1 (ENSFHEG00000013557)	exosc4 (ENSFHEG00000013533)	prkacbb (ENSFHEG00000013527)	ENSFHEG00000013500	ENSFHEG00000013434	ENSFHEG00000013420	ZNF830 (ENSFHEG00000013414)	ENSFHEG00000013408	SRSF11 (ENSFHEG00000013348)	rpe65a (ENSFHEG00000013334) #22	ENSFHEG00000013281	CACNA1E (ENSFHEG00000013252)	ENSFHEG00000013220	KLHL14 (ENSFHEG00000013209)	ENSFHEG00000013176	dtna (ENSFHEG00000013122)	mapre2 (ENSFHEG00000012800)	SPIDR (ENSFHEG00000012783)	cebpd (ENSFHEG00000012767)	mcm4 (ENSFHEG00000012690)	ube2v2 (ENSFHEG00000012580)	snai2 (ENSFHEG00000012561)	SNTG1 (ENSFHEG00000012554)	pcmtd1 (ENSFHEG00000012507)	ENSFHEG00000012494
Sheepshead minnow	MODERN SPECIES	389	MYLK4 (ENSCVAG00000006345)	wrnip1 (ENSCVAG00000006352)	ENSCVAG00000006369	DHX30 (ENSCVAG00000006410)	ENSCVAG00000006572	ENSCVAG00000006586	GPAA1 (ENSCVAG00000006616)	exosc4 (ENSCVAG00000006625)	prkacbb (ENSCVAG00000006652)	ENSCVAG00000006799	ENSCVAG00000006819	ENSCVAG00000006826	ZNF830 (ENSCVAG00000006839)	ENSCVAG00000006886	SRSF11 (ENSCVAG00000006934)	rpe65a (ENSCVAG00000007003) #22	ENSCVAG00000007013	ENSCVAG00000007027	ENSCVAG00000007047	KLHL14 (ENSCVAG00000007076)	ENSCVAG00000007093	dtna (ENSCVAG00000007244)	mapre2 (ENSCVAG00000007279)
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000163866.a.a	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000163866.a.a	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Japanese Medaka HdrR	MODERN SPECIES	8	foxc1a (ENSORLG00000028410)	MYLK4 (ENSORLG00000017260)	wrnip1 (ENSORLG00000017263)	DHX30 (ENSORLG00000017276)	ENSORLG00000017279	ENSORLG00000017281	GPAA1 (ENSORLG00000017289)	exosc4 (ENSORLG00000017295)	ENSORLG00000017303	ENSORLG00000017318	ENSORLG00000017330	ZNF830 (ENSORLG00000017334)	ENSORLG00000017350	ENSORLG00000017357	ENSORLG00000030366	rpe65a (ENSORLG00000017369) #22	RNF11 (ENSORLG00000029728)	ENSORLG00000017409	ENSORLG00000022887	KLHL14 (ENSORLG00000017430)	ENSORLG00000022595	dtna (ENSORLG00000017435)	mapre2 (ENSORLG00000017442)	SPIDR (ENSORLG00000017445)	cebpd (ENSORLG00000022254)	mcm4 (ENSORLG00000017467)	ube2v2 (ENSORLG00000026484)	snai2 (ENSORLG00000017475)	SNTG1 (ENSORLG00000017486)	pcmtd1 (ENSORLG00000017490)	ENSORLG00000017500
Chinese medaka	MODERN SPECIES	770			MYLK4 (ENSOSIG00000003986)	wrnip1 (ENSOSIG00000003977)	DHX30 (ENSOSIG00000023100)	ENSOSIG00000023082	ENSOSIG00000023071	GPAA1 (ENSOSIG00000023067)	exosc4 (ENSOSIG00000023061)	ENSOSIG00000023059	ENSOSIG00000023044	EFCAB14 (ENSOSIG00000023005)	ZNF830 (ENSOSIG00000023004)	ENSOSIG00000022997	ENSOSIG00000022971	rpe65a (ENSOSIG00000022837) #22	RNF11 (ENSOSIG00000022801)	CACNA1E (ENSOSIG00000017146)	KLHL14 (ENSOSIG00000016882)	dtna (ENSOSIG00000016833)	mapre2 (ENSOSIG00000016787)	SPIDR (ENSOSIG00000016783)	cebpd (ENSOSIG00000016781)	mcm4 (ENSOSIG00000015948)	ube2v2 (ENSOSIG00000015928)	snai2 (ENSOSIG00000015927)	SNTG1 (ENSOSIG00000015925)	pcmtd1 (ENSOSIG00000015923)	ENSOSIG00000015922	RB1CC1 (ENSOSIG00000015917)	AGAP3 (ENSOSIG00000015672)
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000163866.a.a	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Indian medaka	MODERN SPECIES	10	foxc1a (ENSOMEG00000005252)	ENSOMEG00000005261	MYLK4 (ENSOMEG00000005303)	wrnip1 (ENSOMEG00000005328)	DHX30 (ENSOMEG00000005351)	ENSOMEG00000005652	ENSOMEG00000005729	GPAA1 (ENSOMEG00000005781)	exosc4 (ENSOMEG00000005800)	ENSOMEG00000005830	ENSOMEG00000006039	ENSOMEG00000006078	ZNF830 (ENSOMEG00000000140)	ENSOMEG00000006129	ENSOMEG00000006172	rpe65a (ENSOMEG00000006219) #22	RNF11 (ENSOMEG00000006241)	CACNA1E (ENSOMEG00000006312)	KLHL14 (ENSOMEG00000006352)	ENSOMEG00000006364	ENSOMEG00000006387	dtna (ENSOMEG00000006419)	mapre2 (ENSOMEG00000006446)	cebpd (ENSOMEG00000006472)	SPIDR (ENSOMEG00000000152)	mcm4 (ENSOMEG00000006568)	ube2v2 (ENSOMEG00000006578)	snai2 (ENSOMEG00000006591)	SNTG1 (ENSOMEG00000006675)	pcmtd1 (ENSOMEG00000006710)	ENSOMEG00000000159
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B.b	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000171212	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B.b	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00800000125285	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Amphiprion	ANCESTRAL SPECIES	35	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B.b	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00800000125285	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Clown anemonefish	MODERN SPECIES	1642																rpe65a (ENSAOCG00000017282) #22	RNF11 (ENSAOCG00000001918)	CACNA1E (ENSAOCG00000017433)	KLHL14 (ENSAOCG00000017524)	ENSAOCG00000017561	dtna (ENSAOCG00000017719)	mapre2 (ENSAOCG00000017771)	SPIDR (ENSAOCG00000001850)	cebpd (ENSAOCG00000017818)	mcm4 (ENSAOCG00000017883)	ube2v2 (ENSAOCG00000001257)	snai2 (ENSAOCG00000017968)	SNTG1 (ENSAOCG00000018031)
Orange clownfish	MODERN SPECIES	1	wrnip1 (ENSAPEG00000004508)	ENSAPEG00000004490	DHX30 (ENSAPEG00000004418)	ENSAPEG00000004129	ENSAPEG00000004049	GPAA1 (ENSAPEG00000003987)	exosc4 (ENSAPEG00000003972)	ENSAPEG00000003931	ENSAPEG00000003886	ENSAPEG00000003797	ENSAPEG00000003778	EFCAB14 (ENSAPEG00000003750)	ZNF830 (ENSAPEG00000003742)	ENSAPEG00000003685	SRSF11 (ENSAPEG00000003619)	rpe65a (ENSAPEG00000003563) #22	RNF11 (ENSAPEG00000003552)	CACNA1E (ENSAPEG00000003437)	KLHL14 (ENSAPEG00000003404)	ENSAPEG00000003391	dtna (ENSAPEG00000003227)	mapre2 (ENSAPEG00000003154)	SPIDR (ENSAPEG00000003141)	cebpd (ENSAPEG00000003115)	mcm4 (ENSAPEG00000003037)	ube2v2 (ENSAPEG00000002994)	snai2 (ENSAPEG00000002983)	ENSAPEG00000002976	SNTG1 (ENSAPEG00000002923)	pcmtd1 (ENSAPEG00000002901)	ENSAPEG00000002880
Spiny chromis	MODERN SPECIES	582															ENSAPOG00000004488	rpe65a (ENSAPOG00000004474) #22	RNF11 (ENSAPOG00000004409)	CACNA1E (ENSAPOG00000004391)	KLHL14 (ENSAPOG00000004276)	ENSAPOG00000004238	dtna (ENSAPOG00000004209)	mapre2 (ENSAPOG00000004105)	SPIDR (ENSAPOG00000004079)	cebpd (ENSAPOG00000000092)	mcm4 (ENSAPOG00000003958)	ube2v2 (ENSAPOG00000003905)	snai2 (ENSAPOG00000003886)	ENSAPOG00000003877
Bicolor damselfish	MODERN SPECIES	953								GPAA1 (ENSSPAG00000016720)	exosc4 (ENSSPAG00000016707)	ENSSPAG00000016673	ENSSPAG00000016583	ENSSPAG00000016565	ZNF830 (ENSSPAG00000016549)	ENSSPAG00000016508	ENSSPAG00000016483	rpe65a (ENSSPAG00000016439) #22	RNF11 (ENSSPAG00000016421)	CACNA1E (ENSSPAG00000015490)
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Nile tilapia	MODERN SPECIES	9	MYLK4 (ENSONIG00000009635)	wrnip1 (ENSONIG00000009634)	DHX30 (ENSONIG00000009631)	ENSONIG00000009630	ENSONIG00000034497	ENSONIG00000009626	GPAA1 (ENSONIG00000009620)	exosc4 (ENSONIG00000009617)	ENSONIG00000009613	ENSONIG00000009599	ENSONIG00000029237	ENSONIG00000009597	ZNF830 (ENSONIG00000021430)	ENSONIG00000009594	ENSONIG00000009591	rpe65a (ENSONIG00000009582) #22	ENSONIG00000035741	CACNA1E (ENSONIG00000009573)	KLHL14 (ENSONIG00000009568)	ENSONIG00000009565	dtna (ENSONIG00000009560)	mapre2 (ENSONIG00000009557)	SPIDR (ENSONIG00000009551)	cebpd (ENSONIG00000021429)	mcm4 (ENSONIG00000009547)	ube2v2 (ENSONIG00000037520)	ENSONIG00000036504	snai2 (ENSONIG00000009542)	SNTG1 (ENSONIG00000009535)	pcmtd1 (ENSONIG00000027759)	ENSONIG00000009529
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Burton s mouthbrooder	MODERN SPECIES	271	foxc1a (ENSHBUG00000005959)	MYLK4 (ENSHBUG00000006002)	wrnip1 (ENSHBUG00000006033)	DHX30 (ENSHBUG00000006060)	ENSHBUG00000006486	ENSHBUG00000006532	GPAA1 (ENSHBUG00000006580)	exosc4 (ENSHBUG00000006605)	ENSHBUG00000006634	ENSHBUG00000006650	ENSHBUG00000006871	ZNF830 (ENSHBUG00000006932)	ENSHBUG00000006961	ENSHBUG00000007061	ENSHBUG00000007092	rpe65a (ENSHBUG00000007192) #22	ENSHBUG00000007217	CACNA1E (ENSHBUG00000007304)	KLHL14 (ENSHBUG00000007325)	ENSHBUG00000007358	dtna (ENSHBUG00000007557)	mapre2 (ENSHBUG00000007605)	SPIDR (ENSHBUG00000007628)	cebpd (ENSHBUG00000007610)	mcm4 (ENSHBUG00000007710)	ube2v2 (ENSHBUG00000007723)	snai2 (ENSHBUG00000007764)	SNTG1 (ENSHBUG00000007864)	pcmtd1 (ENSHBUG00000007906)	RB1CC1 (ENSHBUG00000008004)	AGAP3 (ENSHBUG00000008070)
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
P. nyererei	MODERN SPECIES	299	foxc1a (ENSPNYG00000014110)	MYLK4 (ENSPNYG00000014135)	wrnip1 (ENSPNYG00000014196)	DHX30 (ENSPNYG00000014217)	ENSPNYG00000014268	ENSPNYG00000014349	GPAA1 (ENSPNYG00000014376)	exosc4 (ENSPNYG00000014429)	ENSPNYG00000014446	ENSPNYG00000014486	ENSPNYG00000014528	ENSPNYG00000014560	ZNF830 (ENSPNYG00000014603)	ENSPNYG00000014631	ENSPNYG00000014732	rpe65a (ENSPNYG00000014756) #22	ENSPNYG00000014845	CACNA1E (ENSPNYG00000014872)	KLHL14 (ENSPNYG00000014964)	dtna (ENSPNYG00000014996)	mapre2 (ENSPNYG00000015068)	SPIDR (ENSPNYG00000015101)	cebpd (ENSPNYG00000015118)	mcm4 (ENSPNYG00000015161)	ube2v2 (ENSPNYG00000015191)	snai2 (ENSPNYG00000015217)	SNTG1 (ENSPNYG00000015239)	pcmtd1 (ENSPNYG00000015275)	ENSPNYG00000015289	ENSPNYG00000015299	RB1CC1 (ENSPNYG00000015312)
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00940000163032	ENSGT00390000014654	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Eastern happy	MODERN SPECIES	9	wrnip1 (ENSACLG00000020355)	DHX30 (ENSACLG00000020306)	ENSACLG00000020302	ENSACLG00000020203	ENSACLG00000020160	GPAA1 (ENSACLG00000020109)	exosc4 (ENSACLG00000020071)	ENSACLG00000020037	ENSACLG00000020022	ENSACLG00000020015	ENSACLG00000019762	ENSACLG00000019739	ZNF830 (ENSACLG00000019715)	ENSACLG00000019660	ENSACLG00000019647	rpe65a (ENSACLG00000019561) #22	ENSACLG00000019546	CACNA1E (ENSACLG00000019459)	KLHL14 (ENSACLG00000019388)	ENSACLG00000019265	dtna (ENSACLG00000018833)	mapre2 (ENSACLG00000018775)	cebpd (ENSACLG00000018739)	ENSACLG00000018702	mcm4 (ENSACLG00000018617)	ube2v2 (ENSACLG00000018591)	snai2 (ENSACLG00000018551)	SNTG1 (ENSACLG00000018409)	pcmtd1 (ENSACLG00000018377)	ENSACLG00000018270	RB1CC1 (ENSACLG00000018043)
Zebra mbuna	MODERN SPECIES	1100	foxc1a (ENSMZEG00005025106)	MYLK4 (ENSMZEG00005025100)	wrnip1 (ENSMZEG00005025095)	DHX30 (ENSMZEG00005025092)	ENSMZEG00005025089	ENSMZEG00005025088	GPAA1 (ENSMZEG00005025087)	exosc4 (ENSMZEG00005025086)	ENSMZEG00005025085	ENSMZEG00005025084	ENSMZEG00005025075	ENSMZEG00005025074	ZNF830 (ENSMZEG00005025073)	ENSMZEG00005025072	ENSMZEG00005025071	rpe65a (ENSMZEG00005025070) #22	ENSMZEG00005025069	CACNA1E (ENSMZEG00005025068)	KLHL14 (ENSMZEG00005025067)	dtna (ENSMZEG00005025066)	mapre2 (ENSMZEG00005025065)	cebpd (ENSMZEG00005025064)	ENSMZEG00005025063	mcm4 (ENSMZEG00005025062)	ube2v2 (ENSMZEG00005025061)	snai2 (ENSMZEG00005025060)	SNTG1 (ENSMZEG00005025059)	pcmtd1 (ENSMZEG00005025058)	ENSMZEG00005025056	RB1CC1 (ENSMZEG00005025049)	AGAP3 (ENSMZEG00005025043)
Lyretail cichlid	MODERN SPECIES	300	foxc1a (ENSNBRG00000012654)	MYLK4 (ENSNBRG00000012630)	wrnip1 (ENSNBRG00000012604)	DHX30 (ENSNBRG00000012539)	ENSNBRG00000012446	ENSNBRG00000012382	GPAA1 (ENSNBRG00000012346)	exosc4 (ENSNBRG00000012326)	ENSNBRG00000012307	ENSNBRG00000012297	ENSNBRG00000012253	ZNF830 (ENSNBRG00000012244)	ENSNBRG00000012235	ENSNBRG00000012205	SRSF11 (ENSNBRG00000012193)	rpe65a (ENSNBRG00000012138) #22	ENSNBRG00000012122	CACNA1E (ENSNBRG00000012033)	KLHL14 (ENSNBRG00000011997)	dtna (ENSNBRG00000011913)	mapre2 (ENSNBRG00000011876)	cebpd (ENSNBRG00000011847)	mcm4 (ENSNBRG00000011812)	ube2v2 (ENSNBRG00000011801)	snai2 (ENSNBRG00000011785)	SNTG1 (ENSNBRG00000011748)	pcmtd1 (ENSNBRG00000011723)	ENSNBRG00000011714	RB1CC1 (ENSNBRG00000011655)	AGAP3 (ENSNBRG00000011615)	gbx1 (ENSNBRG00000011598)
Midas cichlid	MODERN SPECIES	641	MYLK4 (ENSACIG00000017494)	wrnip1 (ENSACIG00000017529)	ENSACIG00000017548	DHX30 (ENSACIG00000017560)	ENSACIG00000017622	ENSACIG00000017879	GPAA1 (ENSACIG00000017906)	exosc4 (ENSACIG00000017924)	ENSACIG00000017932	ENSACIG00000017949	ENSACIG00000017990	ENSACIG00000018004	ZNF830 (ENSACIG00000018018)	ENSACIG00000018034	SRSF11 (ENSACIG00000018075)	rpe65a (ENSACIG00000018112) #22	ENSACIG00000018156	CACNA1E (ENSACIG00000018187)	KLHL14 (ENSACIG00000018275)	ENSACIG00000018291	ENSACIG00000018306	mapre2 (ENSACIG00000018321)	SPIDR (ENSACIG00000018342)	cebpd (ENSACIG00000018395)	mcm4 (ENSACIG00000018424)	ube2v2 (ENSACIG00000018451)
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Eupercaria	ANCESTRAL SPECIES	24	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Tetraodontidae	ANCESTRAL SPECIES	30	ENSGT00940000162937.a.b	ENSGT00940000163866.a.a	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Tetraodon	MODERN SPECIES	7	foxf2a (ENSTNIG00000008527)	foxc1a (ENSTNIG00000008526)	MYLK4 (ENSTNIG00000008525)	wrnip1 (ENSTNIG00000008524)	DHX30 (ENSTNIG00000008523)	ENSTNIG00000008522	ENSTNIG00000008521	GPAA1 (ENSTNIG00000008520)	exosc4 (ENSTNIG00000008519)	ENSTNIG00000008518	ENSTNIG00000008517	ENSTNIG00000008516	ZNF830 (ENSTNIG00000001415)	ENSTNIG00000008515	ENSTNIG00000008514	rpe65a (ENSTNIG00000008513) #22	RNF11 (ENSTNIG00000008512)	ENSTNIG00000008511	KLHL14 (ENSTNIG00000008510)	dtna (ENSTNIG00000008509)	mapre2 (ENSTNIG00000008508)	SPIDR (ENSTNIG00000008507)	cebpd (ENSTNIG00000000222)	mcm4 (ENSTNIG00000008506)	ube2v2 (ENSTNIG00000008505)	snai2 (ENSTNIG00000008504)	SNTG1 (ENSTNIG00000008503)	pcmtd1 (ENSTNIG00000008502)	ST18 (ENSTNIG00000008501)	RB1CC1 (ENSTNIG00000008500)	AGAP3 (ENSTNIG00000008499)
Fugu	MODERN SPECIES	14	foxq1a (ENSTRUG00000019504)	foxf2a (ENSTRUG00000011537)	foxc1a (ENSTRUG00000020037)	MYLK4 (ENSTRUG00000011481)	wrnip1 (ENSTRUG00000011447)	ENSTRUG00000019992	ENSTRUG00000031365	ENSTRUG00000011046	GPAA1 (ENSTRUG00000010940)	exosc4 (ENSTRUG00000025054)	ENSTRUG00000010596	ENSTRUG00000009997	ENSTRUG00000009316	ENSTRUG00000022117	ENSTRUG00000009572	rpe65a (ENSTRUG00000009002) #22	RNF11 (ENSTRUG00000023432)	CACNA1E (ENSTRUG00000008613)	KLHL14 (ENSTRUG00000008361)	ENSTRUG00000023325	dtna (ENSTRUG00000007855)	mapre2 (ENSTRUG00000026616)	SPIDR (ENSTRUG00000007627)	cebpd (ENSTRUG00000007551)	mcm4 (ENSTRUG00000006983)	ube2v2 (ENSTRUG00000006972)	snai2 (ENSTRUG00000025588)	SNTG1 (ENSTRUG00000006540)	pcmtd1 (ENSTRUG00000023062)	ST18 (ENSTRUG00000006078)	RB1CC1 (ENSTRUG00000005744)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Ballan wrasse	MODERN SPECIES	428							ENSLBEG00000012835	GPAA1 (ENSLBEG00000012784)	exosc4 (ENSLBEG00000012754)	prkacbb (ENSLBEG00000012717)	ENSLBEG00000012616	EFCAB14 (ENSLBEG00000012544)	ZNF830 (ENSLBEG00000012532)	ENSLBEG00000012492	ENSLBEG00000012466	rpe65a (ENSLBEG00000012414) #22	RNF11 (ENSLBEG00000012378)	ENSLBEG00000012353	ENSLBEG00000012323	KLHL14 (ENSLBEG00000012283)	ENSLBEG00000012215	dtna (ENSLBEG00000012109)	mapre2 (ENSLBEG00000012037)	ENSLBEG00000011991	cebpd (ENSLBEG00000012019)	ENSLBEG00000011969
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Cottioidei	ANCESTRAL SPECIES	22	ENSGT00950000182933.C.i	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586
Stickleback	MODERN SPECIES	2	ENSGACG00000017816	MYADM (ENSGACG00000017818)	wrnip1 (ENSGACG00000017821)	ENSGACG00000017827	DHX30 (ENSGACG00000017828)	ENSGACG00000017831	ENSGACG00000017834	GPAA1 (ENSGACG00000017835)	exosc4 (ENSGACG00000017838)	prkacbb (ENSGACG00000017842)	ENSGACG00000017847	EFCAB14 (ENSGACG00000017852)	ZNF830 (ENSGACG00000017853)	ENSGACG00000017854	ENSGACG00000017855	rpe65a (ENSGACG00000017857) #22	RNF11 (ENSGACG00000017888)	CACNA1E (ENSGACG00000017893)	KLHL14 (ENSGACG00000017904)	dtna (ENSGACG00000017909)	mapre2 (ENSGACG00000017916)	ENSGACG00000017923	SPIDR (ENSGACG00000017926)	cebpd (ENSGACG00000017927)	mcm4 (ENSGACG00000017929)	ube2v2 (ENSGACG00000017931)	snai2 (ENSGACG00000017935)	SNTG1 (ENSGACG00000017936)	pcmtd1 (ENSGACG00000017945)	ENSGACG00000017947	RB1CC1 (ENSGACG00000017953)
Lumpfish	MODERN SPECIES	8	BEST4 (ENSCLMG00005022494)	wrnip1 (ENSCLMG00005022495)	ENSCLMG00005022498	DHX30 (ENSCLMG00005022523)	ENSCLMG00005022524	ENSCLMG00005022525	GPAA1 (ENSCLMG00005022526)	exosc4 (ENSCLMG00005022527)	ENSCLMG00005022532	ENSCLMG00005022703	ENSCLMG00005022708	EFCAB14 (ENSCLMG00005022709)	ZNF830 (ENSCLMG00005022710)	ENSCLMG00005022713	ENSCLMG00005022734	rpe65a (ENSCLMG00005022736) #22	RNF11 (ENSCLMG00005022737)	CACNA1E (ENSCLMG00005022738)	ENSCLMG00005022741	KLHL14 (ENSCLMG00005022742)	dtna (ENSCLMG00005022743)	mapre2 (ENSCLMG00005022758)	SPIDR (ENSCLMG00005022760)	cebpd (ENSCLMG00005022761)	mcm4 (ENSCLMG00005022768)	ube2v2 (ENSCLMG00005022809)	SNAI2 (ENSCLMG00005022810)	SNTG1 (ENSCLMG00005022811)	pcmtd1 (ENSCLMG00005022812)	ST18 (ENSCLMG00005022813)	RB1CC1 (ENSCLMG00005022814)
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Pike perch	MODERN SPECIES	12	foxf2a (ENSSLUG00000003868)	foxc1a (ENSSLUG00000003862)	MYLK4 (ENSSLUG00000003842)	wrnip1 (ENSSLUG00000003834)	DHX30 (ENSSLUG00000003801)	ENSSLUG00000003753	ENSSLUG00000003730	GPAA1 (ENSSLUG00000003696)	exosc4 (ENSSLUG00000003677)	ENSSLUG00000002508	ENSSLUG00000001762	EFCAB14 (ENSSLUG00000001442)	ZNF830 (ENSSLUG00000001439)	ENSSLUG00000001420	SRSF11 (ENSSLUG00000001412)	rpe65a (ENSSLUG00000001404) #22	RNF11 (ENSSLUG00000001403)	CACNA1E (ENSSLUG00000001187)	KLHL14 (ENSSLUG00000001102)	ENSSLUG00000001095	dtna (ENSSLUG00000001044)	mapre2 (ENSSLUG00000001003)	SPIDR (ENSSLUG00000000997)	cebpd (ENSSLUG00000000993)	mcm4 (ENSSLUG00000000910)	ube2v2 (ENSSLUG00000000853)	snai2 (ENSSLUG00000000846)	SNTG1 (ENSSLUG00000000840)	pcmtd1 (ENSSLUG00000000835)	ENSSLUG00000000831	ENSSLUG00000000830
Channel bull blenny	MODERN SPECIES	8	MYLK4 (ENSCGOG00000022533)	wrnip1 (ENSCGOG00000022529)	ENSCGOG00000022418	DHX30 (ENSCGOG00000022409)	ENSCGOG00000022405	ENSCGOG00000022403	GPAA1 (ENSCGOG00000022347)	exosc4 (ENSCGOG00000022344)	ENSCGOG00000021485	ENSCGOG00000018569	ENSCGOG00000018508	EFCAB14 (ENSCGOG00000018503)	ZNF830 (ENSCGOG00000018502)	ENSCGOG00000018335	ENSCGOG00000018328	rpe65a (ENSCGOG00000018171) #22	RNF11 (ENSCGOG00000018159)	CACNA1E (ENSCGOG00000008658)	KLHL14 (ENSCGOG00000008414)	ENSCGOG00000008398	dtna (ENSCGOG00000005281)	mapre2 (ENSCGOG00000005213)	SPIDR (ENSCGOG00000005207)	cebpd (ENSCGOG00000005203)	mcm4 (ENSCGOG00000004032)	ube2v2 (ENSCGOG00000003950)	snai2 (ENSCGOG00000003944)	SNTG1 (ENSCGOG00000003844)	pcmtd1 (ENSCGOG00000003837)	ST18 (ENSCGOG00000003832)	RB1CC1 (ENSCGOG00000003090)
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00940000154511.b	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154511.b	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
European seabass	MODERN SPECIES		MYLK4 (ENSDLAG00005022001)	wrnip1 (ENSDLAG00005034913)	ENSDLAG00005022020	ENSDLAG00005022026	ENSDLAG00005022055	ENSDLAG00005022085	ENSDLAG00005022092	EXOSC4 (ENSDLAG00005022136)	ENSDLAG00005022155	ENSDLAG00005022421	ENSDLAG00005025271	ENSDLAG00005030209	ENSDLAG00005027212	ENSDLAG00005025283	ENSDLAG00005025293	ENSDLAG00005025296 #22	ENSDLAG00005025342	KLHL14 (ENSDLAG00005025780)	ENSDLAG00005033233	dtna (ENSDLAG00005025785)	mapre2 (ENSDLAG00005025797)	mcm4 (ENSDLAG00005025799)	cebpd (ENSDLAG00005025803)	ube2v2 (ENSDLAG00005025878)	SNAI2 (ENSDLAG00005025886)	SNTG1 (ENSDLAG00005025887)	pcmtd1 (ENSDLAG00005025888)	ST18 (ENSDLAG00005025891)	RB1CC1 (ENSDLAG00005025897)	AGAP3 (ENSDLAG00005025915)	gbx1 (ENSDLAG00005026693)
Large yellow croaker	MODERN SPECIES	1	MYLK4 (ENSLCRG00005015968)	wrnip1 (ENSLCRG00005015966)	ENSLCRG00005015965	DHX30 (ENSLCRG00005015964)	ENSLCRG00005015943	ENSLCRG00005015939	GPAA1 (ENSLCRG00005015938)	exosc4 (ENSLCRG00005015936)	ENSLCRG00005014860	ENSLCRG00005014852	ENSLCRG00005004003	EFCAB14 (ENSLCRG00005003913)	ZNF830 (ENSLCRG00005003911)	ENSLCRG00005003723	SRSF11 (ENSLCRG00005003711)	rpe65a (ENSLCRG00005003653) #22	RNF11 (ENSLCRG00005003646)	CACNA1E (ENSLCRG00005000586)	KLHL14 (ENSLCRG00005000561)	ENSLCRG00005000559	dtna (ENSLCRG00005000536)	mapre2 (ENSLCRG00005000534)	SPIDR (ENSLCRG00005000533)	cebpd (ENSLCRG00005000530)	mcm4 (ENSLCRG00005000475)	ube2v2 (ENSLCRG00005000466)	SNAI2 (ENSLCRG00005000465)	SNTG1 (ENSLCRG00005000463)	pcmtd1 (ENSLCRG00005000459)	RB1CC1 (ENSLCRG00005000402)	AGAP3 (ENSLCRG00005000222)
Gilthead seabream	MODERN SPECIES	13	foxc1a (ENSSAUG00010023353)	MYLK4 (ENSSAUG00010023347)	wrnip1 (ENSSAUG00010023344)	ENSSAUG00010023342	DHX30 (ENSSAUG00010023334)	ENSSAUG00010023017	ENSSAUG00010023003	GPAA1 (ENSSAUG00010022987)	exosc4 (ENSSAUG00010022985)	ENSSAUG00010022390	ENSSAUG00010012472	EFCAB14 (ENSSAUG00010012315)	ZNF830 (ENSSAUG00010012313)	ENSSAUG00010012280	SRSF11 (ENSSAUG00010012277)	rpe65a (ENSSAUG00010012127) #22	RNF11 (ENSSAUG00010012109)	CACNA1E (ENSSAUG00010007497)	KLHL14 (ENSSAUG00010007453)	ENSSAUG00010007444	dtna (ENSSAUG00010007409)	mapre2 (ENSSAUG00010007398)	SPIDR (ENSSAUG00010007395)	cebpd (ENSSAUG00010007393)	mcm4 (ENSSAUG00010006897)	ube2v2 (ENSSAUG00010006759)	snai2 (ENSSAUG00010006755)	SNTG1 (ENSSAUG00010006754)	pcmtd1 (ENSSAUG00010006752)	ENSSAUG00010006749	RB1CC1 (ENSSAUG00010006685)
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Climbing perch	MODERN SPECIES	8	MYLK4 (ENSATEG00000008322)	wrnip1 (ENSATEG00000008306)	ENSATEG00000008280	ENSATEG00000008254	ENSATEG00000007947	ENSATEG00000007832	ENSATEG00000007796	EXOSC4 (ENSATEG00000007766)	ENSATEG00000007721	ENSATEG00000007607	ENSATEG00000030121	ENSATEG00000007581	ENSATEG00000007595	ENSATEG00000007553	ENSATEG00000007534	ENSATEG00000007488 #22	ENSATEG00000029818	ENSATEG00000007168	KLHL14 (ENSATEG00000007129)	dtna (ENSATEG00000007085)	mapre2 (ENSATEG00000007058)	SPIDR (ENSATEG00000007043)	cebpd (ENSATEG00000006996)	mcm4 (ENSATEG00000006932)	ube2v2 (ENSATEG00000006914)	snai2 (ENSATEG00000006892)	SNTG1 (ENSATEG00000006872)	pcmtd1 (ENSATEG00000006834)	ENSATEG00000029591	RB1CC1 (ENSATEG00000006655)	AGAP3 (ENSATEG00000006574)
Siamese fighting fish	MODERN SPECIES	8	MYLK4 (ENSBSLG00000006661)	wrnip1 (ENSBSLG00000006713)	ENSBSLG00000006748	DHX30 (ENSBSLG00000006776)	ENSBSLG00000006896	ENSBSLG00000007082	GPAA1 (ENSBSLG00000007113)	exosc4 (ENSBSLG00000007147)	ENSBSLG00000007180	ENSBSLG00000008271	ENSBSLG00000015874	ENSBSLG00000015881	ZNF830 (ENSBSLG00000015885)	ENSBSLG00000015890	ENSBSLG00000015945	rpe65a (ENSBSLG00000015961) #22	RNF11 (ENSBSLG00000015989)	CACNA1E (ENSBSLG00000017267)	KLHL14 (ENSBSLG00000020754)	ENSBSLG00000020759	dtna (ENSBSLG00000021258)	mapre2 (ENSBSLG00000021632)	SPIDR (ENSBSLG00000021635)	cebpd (ENSBSLG00000021638)	mcm4 (ENSBSLG00000021654)	ube2v2 (ENSBSLG00000022195)	snai2 (ENSBSLG00000022232)	SNTG1 (ENSBSLG00000022236)	pcmtd1 (ENSBSLG00000022260)	ST18 (ENSBSLG00000022269)	RB1CC1 (ENSBSLG00000022306)
Zig-zag eel	MODERN SPECIES	8	foxc1a (ENSMAMG00000014532)	MYLK4 (ENSMAMG00000014569)	wrnip1 (ENSMAMG00000014592)	ENSMAMG00000014611	ENSMAMG00000014632	ENSMAMG00000014645	ENSMAMG00000014699	EXOSC4 (ENSMAMG00000014749)	ENSMAMG00000014760	ENSMAMG00000014801	ENSMAMG00000014908	ENSMAMG00000014920	ENSMAMG00000014940	ENSMAMG00000014950	ENSMAMG00000015002	ENSMAMG00000015019 #22	ENSMAMG00000015046	ENSMAMG00000015076	KLHL14 (ENSMAMG00000015269)	ENSMAMG00000015293	dtna (ENSMAMG00000015303)	mapre2 (ENSMAMG00000015344)	SPIDR (ENSMAMG00000015367)	cebpd (ENSMAMG00000015447)	mcm4 (ENSMAMG00000015571)	ube2v2 (ENSMAMG00000015617)	snai2 (ENSMAMG00000015632)	SNTG1 (ENSMAMG00000015642)	pcmtd1 (ENSMAMG00000015683)	ENSMAMG00000015700	ENSMAMG00000026024
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Seriola	ANCESTRAL SPECIES		ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000156348.B	ENSGT00940000177054	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Greater amberjack	MODERN SPECIES	99	foxc1a (ENSSDUG00000020024)	MYLK4 (ENSSDUG00000020006)	wrnip1 (ENSSDUG00000019990)	ENSSDUG00000019289	DHX30 (ENSSDUG00000019188)	ENSSDUG00000019068	ENSSDUG00000019039	GPAA1 (ENSSDUG00000018978)	exosc4 (ENSSDUG00000018966)	ENSSDUG00000018921	ADGRL2 (ENSSDUG00000018871)	ZNF830 (ENSSDUG00000018857)	ENSSDUG00000018838	ENSSDUG00000018770	ENSSDUG00000018738	rpe65a (ENSSDUG00000018708) #22	RNF11 (ENSSDUG00000018698)	CACNA1E (ENSSDUG00000018484)	KLHL14 (ENSSDUG00000018412)	ENSSDUG00000018378	dtna (ENSSDUG00000018228)	mapre2 (ENSSDUG00000018190)	SPIDR (ENSSDUG00000018162)	cebpd (ENSSDUG00000018137)	mcm4 (ENSSDUG00000018088)	ube2v2 (ENSSDUG00000018070)	snai2 (ENSSDUG00000018060)	SNTG1 (ENSSDUG00000017958)	pcmtd1 (ENSSDUG00000017919)	ST18 (ENSSDUG00000017880)	RB1CC1 (ENSSDUG00000017754)
Yellowtail amberjack	MODERN SPECIES	2638										ENSSLDG00000011837	ENSSLDG00000012004	ENSSLDG00000012029	ZNF830 (ENSSLDG00000012049)	ENSSLDG00000012062	ENSSLDG00000012105	rpe65a (ENSSLDG00000012126) #22	RNF11 (ENSSLDG00000012182)	CACNA1E (ENSSLDG00000012200)	ENSSLDG00000012281	KLHL14 (ENSSLDG00000012303)	ENSSLDG00000012335	dtna (ENSSLDG00000012390)	mapre2 (ENSSLDG00000012676)	SPIDR (ENSSLDG00000012698)	cebpd (ENSSLDG00000012735)	mcm4 (ENSSLDG00000012781)	ube2v2 (ENSSLDG00000012831)	snai2 (ENSSLDG00000012852)	SNTG1 (ENSSLDG00000012880)	pcmtd1 (ENSSLDG00000012936)	ST18 (ENSSLDG00000012990)
Barramundi perch	MODERN SPECIES	69	MYLK4 (ENSLCAG00010009598)	wrnip1 (ENSLCAG00010009449)	ENSLCAG00010009408	ENSLCAG00010009406	DHX30 (ENSLCAG00010009394)	ENSLCAG00010009383	ENSLCAG00010009378	GPAA1 (ENSLCAG00010009363)	exosc4 (ENSLCAG00010009355)	ENSLCAG00010009124	ENSLCAG00010008911	ENSLCAG00010008843	ZNF830 (ENSLCAG00010008839)	ENSLCAG00010008791	SRSF11 (ENSLCAG00010008776)	rpe65a (ENSLCAG00010008728) #22	RNF11 (ENSLCAG00010008706)	CACNA1E (ENSLCAG00010006026)	KLHL14 (ENSLCAG00010005557)	ENSLCAG00010005547	dtna (ENSLCAG00010005419)	mapre2 (ENSLCAG00010005352)	SPIDR (ENSLCAG00010005335)	cebpd (ENSLCAG00010005325)	mcm4 (ENSLCAG00010005262)	ube2v2 (ENSLCAG00010005223)	snai2 (ENSLCAG00010005214)	SNTG1 (ENSLCAG00010005205)	pcmtd1 (ENSLCAG00010005197)	ST18 (ENSLCAG00010005184)	RB1CC1 (ENSLCAG00010005128)
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000168875	ENSGT00940000177054	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Tongue sole	MODERN SPECIES	12	gbx1 (ENSCSEG00000011077)	AGAP3 (ENSCSEG00000011034)	RB1CC1 (ENSCSEG00000010957)	ST18 (ENSCSEG00000010940)	pcmtd1 (ENSCSEG00000010930)	GPAA1 (ENSCSEG00000010913)	exosc4 (ENSCSEG00000010906)	ENSCSEG00000010891	ENSCSEG00000010883	ENSCSEG00000010783	ENSCSEG00000010760	ZNF830 (ENSCSEG00000010754)	ENSCSEG00000010734	ENSCSEG00000010721	RNF11 (ENSCSEG00000010710)	rpe65a (ENSCSEG00000010662) #22	CACNA1E (ENSCSEG00000010561)	ENSCSEG00000010554	KLHL14 (ENSCSEG00000010537)	ENSCSEG00000010507	dtna (ENSCSEG00000010470)	mapre2 (ENSCSEG00000010441)	cebpd (ENSCSEG00000010409)	ENSCSEG00000010390	mcm4 (ENSCSEG00000010327)	ube2v2 (ENSCSEG00000010314)	snai2 (ENSCSEG00000010311)	SNTG1 (ENSCSEG00000010282)	ENSCSEG00000010255	ENSCSEG00000010237	DSP (ENSCSEG00000010216)
Turbot	MODERN SPECIES	19	foxq1a (ENSSMAG00000020104)	foxf2a (ENSSMAG00000020102)	foxc1a (ENSSMAG00000017911)	MYLK4 (ENSSMAG00000020083)	wrnip1 (ENSSMAG00000020079)	ENSSMAG00000020068	ENSSMAG00000020059	ENSSMAG00000020031	ENSSMAG00000020020	ENSSMAG00000020010	ENSSMAG00000020002	ENSSMAG00000019944	ENSSMAG00000019932	ENSSMAG00000019907	ENSSMAG00000019897	ENSSMAG00000019864 #22	ENSSMAG00000019860	ENSSMAG00000019815	KLHL14 (ENSSMAG00000019795)	ENSSMAG00000019772	dtna (ENSSMAG00000019619)	mapre2 (ENSSMAG00000019607)	SPIDR (ENSSMAG00000019476)	cebpd (ENSSMAG00000019584)	mcm4 (ENSSMAG00000019411)	ube2v2 (ENSSMAG00000024137)	ENSSMAG00000019379	snai2 (ENSSMAG00000019364)	SNTG1 (ENSSMAG00000019294)	ENSSMAG00000023249	pcmtd1 (ENSSMAG00000019275)
Tiger tail seahorse	MODERN SPECIES	277	jmjd4 (ENSHCOG00000018466)	snap47 (ENSHCOG00000018474)	wnt9a (ENSHCOG00000018585)	DHX30 (ENSHCOG00000018612)	ENSHCOG00000018626	ENSHCOG00000000688	ENSHCOG00000018847	GPAA1 (ENSHCOG00000018861)	exosc4 (ENSHCOG00000018875)	ENSHCOG00000018904	ENSHCOG00000018968	ZNF830 (ENSHCOG00000018982)	EFCAB14 (ENSHCOG00000018985)	ENSHCOG00000019026	ENSHCOG00000019035	rpe65a (ENSHCOG00000019070) #22	RNF11 (ENSHCOG00000019087)	CACNA1E (ENSHCOG00000019197)	KLHL14 (ENSHCOG00000019238)	dtna (ENSHCOG00000019283)	mapre2 (ENSHCOG00000019318)	ENSHCOG00000019326	cebpd (ENSHCOG00000019368)	mcm4 (ENSHCOG00000019404)	ube2v2 (ENSHCOG00000019424)	snai2 (ENSHCOG00000019435)	SNTG1 (ENSHCOG00000019480)	pcmtd1 (ENSHCOG00000019502)	ENSHCOG00000019513	RB1CC1 (ENSHCOG00000019600)	AGAP3 (ENSHCOG00000019645)
Pinecone sodierfish	MODERN SPECIES	8	foxc1a (ENSMMDG00005010993)	MYLK4 (ENSMMDG00005010996)	wrnip1 (ENSMMDG00005011001)	ENSMMDG00005011008	DHX30 (ENSMMDG00005011036)	ENSMMDG00005011041	ENSMMDG00005011158	GPAA1 (ENSMMDG00005011163)	exosc4 (ENSMMDG00005011177)	ENSMMDG00005011208	ENSMMDG00005013656	EFCAB14 (ENSMMDG00005016386)	ZNF830 (ENSMMDG00005016388)	ENSMMDG00005016395	SRSF11 (ENSMMDG00005016558)	rpe65a (ENSMMDG00005016561) #22	RNF11 (ENSMMDG00005016563)	ENSMMDG00005016565	ENSMMDG00005016567	KLHL14 (ENSMMDG00005016570)	ENSMMDG00005016572	ENSMMDG00005016573	mapre2 (ENSMMDG00005016575)	SPIDR (ENSMMDG00005016579)	cebpd (ENSMMDG00005016583)	mcm4 (ENSMMDG00005016605)	ube2v2 (ENSMMDG00005017027)	snai2 (ENSMMDG00005017041)	SNTG1 (ENSMMDG00005017044)	pcmtd1 (ENSMMDG00005017050)	ENSMMDG00005017051
Cod	MODERN SPECIES	21	ENSGMOG00000030949	ENSGMOG00000018411	sft2d3 (ENSGMOG00000029057)	ENSGMOG00000025734	ENSGMOG00000032974	ENSGMOG00000025753	ENSGMOG00000035257	ENSGMOG00000034386	ENSGMOG00000002097	EXOSC4 (ENSGMOG00000002113)	ENSGMOG00000002125	ENSGMOG00000015205	ENSGMOG00000002222	ENSGMOG00000030482	ENSGMOG00000002255	ENSGMOG00000002287 #22	ENSGMOG00000024662	ENSGMOG00000002325	KLHL14 (ENSGMOG00000002423)	ENSGMOG00000025874	dtna (ENSGMOG00000002455)	mapre2 (ENSGMOG00000002503)	SPIDR (ENSGMOG00000033595)	cebpd (ENSGMOG00000002585)	mcm4 (ENSGMOG00000002603)	ube2v2 (ENSGMOG00000002655)	SNTG1 (ENSGMOG00000002680)	pcmtd1 (ENSGMOG00000028842)	ENSGMOG00000028587	RB1CC1 (ENSGMOG00000002866)	AGAP3 (ENSGMOG00000002916)
Protacanthopterygii	ANCESTRAL SPECIES	14	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT01030000234528.B.b.b.bb.b	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b	ENSGT00940000155601.h	ENSGT00940000159556	ENSGT00940000166855	ENSGT00940000153897.a	ENSGT00490000043329.a.a.b	ENSGT00390000014654	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154511.b	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871
Salmoninae	ANCESTRAL SPECIES	86	ENSGT01030000235262.a	ENSGT00390000011196.m	ENSGT00390000012151.d	ENSGT00950000182928.B.d.a.f	ENSGT00730000110872.b.db.i	ENSGT00940000155265.b.a.f	ENSGT00940000164582.b.e	ENSGT00390000013685.g	ENSGT00940000153348.B.h	ENSGT00940000163111.a.b.y.a	ENSGT00940000156348.B.i.b	ENSGT00390000011196.n	ENSGT00390000012151.c	ENSGT00950000182928.B.d.a.e	ENSGT00730000110872.b.db.j	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.c	ENSGT00940000155601.h.r	ENSGT00940000159556.b	ENSGT00730000110988.wb.b.d	ENSGT00940000155601.h.q	ENSGT00940000159556.a	ENSGT00940000153897.a.y	ENSGT00490000043329.a.a.b.k	ENSGT00390000014654	ENSGT00940000163032.o	ENSGT01050000244824.A.s.a	ENSGT00740000115534.a.b.o.b	ENSGT00940000154511.b.a	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000159059.j	ENSGT00940000162937.a.b.f	ENSGT00940000163866.a.a.g	ENSGT00940000162303.a.b.c	ENSGT00940000156211.a.b.c	ENSGT00940000164582.b.f	ENSGT00390000013685.h	ENSGT00940000153348.B.g	ENSGT00940000163111.a.b.y.b	ENSGT01030000235262.a	ENSGT00940000156348.B.i.a	ENSGT00390000011196.m	ENSGT00390000012151.d	ENSGT00950000182928.B.d.a.f	ENSGT00730000110872.b.db.i	ENSGT00950000182913.B.e.c #22	ENSGT00730000110988.wb.b.d	ENSGT00940000155601.h.q	ENSGT00940000159556.a	ENSGT00940000153897.a.y	ENSGT00490000043329.a.a.b.k	ENSGT00390000014654	ENSGT00940000163032.o	ENSGT01050000244824.A.s.a	ENSGT00740000115534.a.b.o.b	ENSGT00940000154511.b.a	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000159059.j	ENSGT00940000162937.a.b.f	ENSGT00940000163866.a.a.g	ENSGT00940000162303.a.b.c	ENSGT00940000156211.a.b.c	ENSGT00940000164582.b.f	ENSGT00390000013685.h	ENSGT00940000153348.B.g	ENSGT00940000163111.a.b.y.b	ENSGT01030000235262.a	ENSGT00940000156348.B.i.a	ENSGT00390000011196.m	ENSGT00390000012151.d	ENSGT00950000182928.B.d.a.f	ENSGT00730000110872.b.db.i	ENSGT00950000182913.B.e.c #22	ENSGT00730000110988.wb.b.d	ENSGT00940000155601.h.q	ENSGT00940000159556.a	ENSGT00940000153897.a.y	ENSGT00490000043329.a.a.b.k	ENSGT00390000014654	ENSGT00940000163032.o	ENSGT01050000244824.A.s.a	ENSGT00740000115534.a.b.o.b	ENSGT00940000154511.b.a	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00940000159059.j	ENSGT00940000162937.a.b.f	ENSGT00940000163866.a.a.g	ENSGT00940000162303.a.b.c	ENSGT00940000156211.a.b.c	ENSGT00940000164582.b.f	ENSGT00390000013685.h	ENSGT00940000153348.B.g	ENSGT00940000163111.a.b.y.b	ENSGT01030000235262.a	ENSGT00940000156348.B.i.a	ENSGT00390000011196.m	ENSGT00390000012151.d	ENSGT00950000182928.B.d.a.f	ENSGT00730000110872.b.db.i	ENSGT00950000182913.B.e.c #22	ENSGT00730000110988.wb.b.d	ENSGT00940000155601.h.q	ENSGT00940000159556.a	ENSGT00940000153897.a.y	ENSGT00490000043329.a.a.b.k	ENSGT00390000014654	ENSGT00940000163032.o	ENSGT01050000244824.A.s.a	ENSGT00740000115534.a.b.o.b	ENSGT00940000154511.b.a	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db
Chinook salmon	MODERN SPECIES	20	foxq1a (ENSOTSG00005044457)	foxf2a (ENSOTSG00005044456)	foxc1a (ENSOTSG00005044455)	MYLK4 (ENSOTSG00005044454)	ENSOTSG00005044453	GPAA1 (ENSOTSG00005044452)	exosc4 (ENSOTSG00005044450)	prkacbb (ENSOTSG00005044235)	ENSOTSG00005044228	ENSOTSG00005036366	ENSOTSG00005036348	ENSOTSG00005036329	ZNF830 (ENSOTSG00005036327)	ENSOTSG00005036256	ENSOTSG00005036243	rpe65a (ENSOTSG00005036221) #22	RNF11 (ENSOTSG00005036218)	CACNA1E (ENSOTSG00005036191)	KLHL14 (ENSOTSG00005036150)	dtna (ENSOTSG00005035319)	mapre2 (ENSOTSG00005035304)	ENSOTSG00005035302	mcm4 (ENSOTSG00005030148)	ube2v2 (ENSOTSG00005030094)	SNAI2 (ENSOTSG00005030091)	SNTG1 (ENSOTSG00005030084)	pcmtd1 (ENSOTSG00005030078)	ST18 (ENSOTSG00005030071)	RB1CC1 (ENSOTSG00005029998)	AGAP3 (ENSOTSG00005025446)	gbx1 (ENSOTSG00005025423)
Coho salmon	MODERN SPECIES	19	foxf2a (ENSOKIG00005027300)	foxc1a (ENSOKIG00005027293)	ENSOKIG00005027286	ENSOKIG00005027279	MYLK4 (ENSOKIG00005027248)	ENSOKIG00005027196	GPAA1 (ENSOKIG00005027112)	exosc4 (ENSOKIG00005027091)	ENSOKIG00005026368	ENSOKIG00005026292	ENSOKIG00005020334	ENSOKIG00005020025	ZNF830 (ENSOKIG00005020018)	ENSOKIG00005019654	ENSOKIG00005019611	RPE65 (ENSOKIG00005019487) #22	RNF11 (ENSOKIG00005019478)	CACNA1E (ENSOKIG00005016638)	ENSOKIG00005016440	KLHL14 (ENSOKIG00005016434)	ENSOKIG00005016427	dtna (ENSOKIG00005015824)	mapre2 (ENSOKIG00005015714)	ENSOKIG00005015683	cebpd (ENSOKIG00005015672)	ENSOKIG00005015667	mcm4 (ENSOKIG00005012623)	ube2v2 (ENSOKIG00005015575)	ENSOKIG00005012448	SNAI2 (ENSOKIG00005012435)	SNTG1 (ENSOKIG00005012321)
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182913.B.e.c #22
River trout	MODERN SPECIES	13	foxq1a (ENSSTUG00000050567)	foxf2a (ENSSTUG00000050569)	foxc1a (ENSSTUG00000050571)	MYLK4 (ENSSTUG00000050576)	wrnip1 (ENSSTUG00000050585)	DHX30 (ENSSTUG00000050600)	ENSSTUG00000050631	GPAA1 (ENSSTUG00000050634)	prkacbb (ENSSTUG00000050645)	ADGRL2 (ENSSTUG00000050657)	ENSSTUG00000050692	ENSSTUG00000050693	ZNF830 (ENSSTUG00000050694)	ENSSTUG00000050697	SRSF11 (ENSSTUG00000050710)	rpe65a (ENSSTUG00000002403) #22	RNF11 (ENSSTUG00000003423)	CACNA1E (ENSSTUG00000003566)	KLHL14 (ENSSTUG00000006601)	ENSSTUG00000006617	dtna (ENSSTUG00000006673)	mapre2 (ENSSTUG00000007016)	ENSSTUG00000007020	cebpd (ENSSTUG00000007027)	mcm4 (ENSSTUG00000007059)	ube2v2 (ENSSTUG00000007810)	SNAI2 (ENSSTUG00000007961)	SNTG1 (ENSSTUG00000007973)	pcmtd1 (ENSSTUG00000008156)	ST18 (ENSSTUG00000008180)	RB1CC1 (ENSSTUG00000008258)
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000162303.a.b.d	ENSGT00940000156211.a.b.d	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a.e	ENSGT00940000164582.b.e	ENSGT00390000013685.g	ENSGT00940000153348.B.h	ENSGT00940000163111.a.b.y.a	ENSGT01030000235262.b	ENSGT00940000156348.B.i.b	ENSGT00390000011196.n	ENSGT00390000012151.c	ENSGT00950000182928.B.d.a.e	ENSGT00730000110872.b.db.j	ENSGT00950000182913.B.e.d #22	ENSGT00730000110988.wb.b.c	ENSGT00940000155601.h.r	ENSGT00940000159556.b	ENSGT00940000166855	ENSGT00940000153897.a.z	ENSGT00490000043329.a.a.b.l	ENSGT00940000163032.p	ENSGT01050000244824.A.s.b	ENSGT00740000115534.a.b.o.a	ENSGT00940000154511.b.b	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000163866.a.a.h	ENSGT00940000162303.a.b.d	ENSGT00940000156211.a.b.d	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a.e	ENSGT00390000013685.g	ENSGT00940000153348.B.h	ENSGT00940000163111.a.b.y.a	ENSGT00940000156348.B.i.b	ENSGT01030000235262.b	ENSGT00390000011196.n	ENSGT00390000012151.c	ENSGT00950000182928.B.d.a.e	ENSGT00730000110872.b.db.j	ENSGT00950000182913.B.e.d #22	ENSGT00730000110988.wb.b.c	ENSGT00940000155601.h.r	ENSGT00940000159556.b	ENSGT00940000166855	ENSGT00940000153897.a.z	ENSGT00490000043329.a.a.b.l	ENSGT00940000163032.p	ENSGT01050000244824.A.s.b	ENSGT00740000115534.a.b.o.a	ENSGT00940000154511.b.b	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000163866.a.a.h	ENSGT00940000162303.a.b.d	ENSGT00940000156211.a.b.d	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a.e	ENSGT00390000013685.g	ENSGT00940000153348.B.h	ENSGT00940000163111.a.b.y.a	ENSGT00940000156348.B.i.b	ENSGT01030000235262.b	ENSGT00390000011196.n	ENSGT00390000012151.c	ENSGT00950000182928.B.d.a.e	ENSGT00730000110872.b.db.j	ENSGT00950000182913.B.e.d #22	ENSGT00730000110988.wb.b.c	ENSGT00940000155601.h.r	ENSGT00940000159556.b	ENSGT00940000166855	ENSGT00940000153897.a.z	ENSGT00490000043329.a.a.b.l	ENSGT00940000163032.p	ENSGT01050000244824.A.s.b	ENSGT00740000115534.a.b.o.a	ENSGT00940000154511.b.b	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2989							GPAA1 (ENSOTSG00005045724)	exosc4 (ENSOTSG00005045699)	prkacbb (ENSOTSG00005045219)	ENSOTSG00005045215	ADGRL2 (ENSOTSG00005033494)	ENSOTSG00005033454	ZNF830 (ENSOTSG00005033453)	ENSOTSG00005033452	SRSF11 (ENSOTSG00005033450)	rpe65a (ENSOTSG00005033427) #22	RNF11 (ENSOTSG00005033422)	CACNA1E (ENSOTSG00005032543)	KLHL14 (ENSOTSG00005032520)
Chinook salmon	MODERN SPECIES	1	mcm4 (ENSOTSG00005018578)	cebpd (ENSOTSG00005018554)	mapre2 (ENSOTSG00005018552)	dtna (ENSOTSG00005018079)	ENSOTSG00005018063	ENSOTSG00005018060	GPAA1 (ENSOTSG00005018054)	exosc4 (ENSOTSG00005018049)	prkacbb (ENSOTSG00005017730)	ENSOTSG00005017723	ADGRL2 (ENSOTSG00005001587)	ENSOTSG00005001426	ZNF830 (ENSOTSG00005001422)	ENSOTSG00005001147	SRSF11 (ENSOTSG00005001134)	rpe65a (ENSOTSG00005000972) #22	RNF11 (ENSOTSG00005000787)	CACNA1E (ENSOTSG00005047630)	KLHL14 (ENSOTSG00005047627)	foxc1a (ENSOTSG00005047626)	foxf2a (ENSOTSG00005047625)	foxq1a (ENSOTSG00005047624)	irf4a (ENSOTSG00005047622)	dusp22b (ENSOTSG00005047620)	ripk1l (ENSOTSG00005047619)	opn7a (ENSOTSG00005047616)	ENSOTSG00005047612	MEP1B (ENSOTSG00005047611)	PHLPP1 (ENSOTSG00005047603)	PHACTR1 (ENSOTSG00005047601)	adcy1b (ENSOTSG00005047597)
Coho salmon	MODERN SPECIES	23	foxq1a (ENSOKIG00005030027)	foxf2a (ENSOKIG00005030033)	foxc1a (ENSOKIG00005030046)	MYLK4 (ENSOKIG00005030060)	wrnip1 (ENSOKIG00005030077)	ENSOKIG00005030088	DHX30 (ENSOKIG00005030135)	ENSOKIG00005030508	GPAA1 (ENSOKIG00005030559)	prkacbb (ENSOKIG00005031208)	ADGRL2 (ENSOKIG00005031657)	ENSOKIG00005038636	EFCAB14 (ENSOKIG00005038642)	ENSOKIG00005038660	ENSOKIG00005038828	rpe65a (ENSOKIG00005038933) #22	RNF11 (ENSOKIG00005040187)	CACNA1E (ENSOKIG00005040342)	KLHL14 (ENSOKIG00005042027)	ENSOKIG00005042070	dtna (ENSOKIG00005042216)	mapre2 (ENSOKIG00005042521)	cebpd (ENSOKIG00005042535)	mcm4 (ENSOKIG00005042602)	ube2v2 (ENSOKIG00005043488)	SNAI2 (ENSOKIG00005043628)	SNTG1 (ENSOKIG00005043681)	pcmtd1 (ENSOKIG00005043814)	ST18 (ENSOKIG00005043866)	RB1CC1 (ENSOKIG00005043923)	AGAP3 (ENSOKIG00005044247)
Rainbow trout	MODERN SPECIES	29	MYLK4 (ENSOMYG00000004501)	wrnip1 (ENSOMYG00000004537)	ENSOMYG00000066339	ENSOMYG00000004714	ENSOMYG00000004839	ENSOMYG00000004964	ENSOMYG00000005731	ENSOMYG00000009381	ENSOMYG00000019540	ENSOMYG00000068427	ENSOMYG00000019556	ENSOMYG00000019547	ENSOMYG00000019590	ENSOMYG00000068239	ENSOMYG00000019683	ENSOMYG00000019799 #22	ENSOMYG00000063147	ENSOMYG00000021097	KLHL14 (ENSOMYG00000022576)	ENSOMYG00000022619	ENSOMYG00000077404	dtna (ENSOMYG00000022825)	mapre2 (ENSOMYG00000023514)	ENSOMYG00000075412	cebpd (ENSOMYG00000023544)	mcm4 (ENSOMYG00000023779)	ube2v2 (ENSOMYG00000024616)	SNAI2 (ENSOMYG00000024876)	SNTG1 (ENSOMYG00000024969)	pcmtd1 (ENSOMYG00000025156)	ST18 (ENSOMYG00000025223)
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000162937.a.b.e	ENSGT00940000163866.a.a.h	ENSGT00940000162303.a.b.d	ENSGT00940000156211.a.b.d	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000164582.b.e	ENSGT00390000013685.g	ENSGT00940000163111.a.b.y.a	ENSGT00940000156348.B.i.b	ENSGT01030000235262.b	ENSGT00390000011196.n	ENSGT00390000012151.c	ENSGT00950000182928.B.d.a.e	ENSGT00730000110872.b.db.j	ENSGT00950000182913.B.e.d #22	ENSGT00730000110988.wb.b.c	ENSGT00940000155601.h.r	ENSGT00940000159556.b	ENSGT00940000166855	ENSGT00940000153897.a.z	ENSGT00490000043329.a.a.b.l	ENSGT00940000163032.p	ENSGT01050000244824.A.s.b	ENSGT00740000115534.a.b.o.a	ENSGT00940000154511.b.b	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb
Atlantic salmon	MODERN SPECIES	5	ripk1 (ENSSSAG00000080317)	irf4a (ENSSSAG00000080329)	foxf2 (ENSSSAG00000080335)	foxc1 (ENSSSAG00000118462)	MYLK4 (ENSSSAG00000086297)	wrnip1 (ENSSSAG00000080340)	ENSSSAG00000080345	ENSSSAG00000117947	ENSSSAG00000080405	ENSSSAG00000080429	ENSSSAG00000080699	ENSSSAG00000081421	ccd16 (ENSSSAG00000081420)	ENSSSAG00000081422	ENSSSAG00000081434	ENSSSAG00000081448 #22	ENSSSAG00000081464	ENSSSAG00000081512	KLHL14 (ENSSSAG00000081653)	ENSSSAG00000081655	dtna (ENSSSAG00000081677)	mapre2 (ENSSSAG00000081701)	mcm4 (ENSSSAG00000081704)	ube2v2 (ENSSSAG00000081709)	SNAI2 (ENSSSAG00000090597)	SNTG1 (ENSSSAG00000071111)	pcmtd1 (ENSSSAG00000039804)	ST18 (ENSSSAG00000039855)	ENSSSAG00000094155	RB1CC1 (ENSSSAG00000040196)	ENSSSAG00000092930
Huchen	MODERN SPECIES	655	ENSHHUG00000048101	wrnip1 (ENSHHUG00000048114)	DHX30 (ENSHHUG00000048129)	ENSHHUG00000048143	ENSHHUG00000048147	ENSHHUG00000048150	GPAA1 (ENSHHUG00000048153)	exosc4 (ENSHHUG00000048165)	prkacbb (ENSHHUG00000048178)	ADGRL2 (ENSHHUG00000048703)	ENSHHUG00000049379	EFCAB14 (ENSHHUG00000049384)	ZNF830 (ENSHHUG00000049386)	ENSHHUG00000049390	ENSHHUG00000049414	rpe65a (ENSHHUG00000049426) #22	RNF11 (ENSHHUG00000049612)	CACNA1E (ENSHHUG00000049696)	KLHL14 (ENSHHUG00000052688)
Northern pike	MODERN SPECIES	2	ENSELUG00000029551	MYLK4 (ENSELUG00000019766)	wrnip1 (ENSELUG00000019799)	ENSELUG00000020854	DHX30 (ENSELUG00000020943)	ENSELUG00000020949	ENSELUG00000020957	GPAA1 (ENSELUG00000020988)	exosc4 (ENSELUG00000026718)	prkacbb (ENSELUG00000021034)	ADGRL2 (ENSELUG00000021154)	EFCAB14 (ENSELUG00000021219)	ZNF830 (ENSELUG00000021238)	ENSELUG00000021264	ENSELUG00000021268	rpe65a (ENSELUG00000021297) #22	RNF11 (ENSELUG00000021315)	CACNA1E (ENSELUG00000021389)	KLHL14 (ENSELUG00000021436)	ENSELUG00000029900	dtna (ENSELUG00000021517)	mapre2 (ENSELUG00000021574)	SPIDR (ENSELUG00000021622)	cebpd (ENSELUG00000021661)	mcm4 (ENSELUG00000021720)	ube2v2 (ENSELUG00000029938)	SNAI2 (ENSELUG00000021795)	SNTG1 (ENSELUG00000021900)	pcmtd1 (ENSELUG00000021947)	ST18 (ENSELUG00000021998)	RB1CC1 (ENSELUG00000022064)
Otomorpha	ANCESTRAL SPECIES	411						ENSGT00940000164582.b	ENSGT00390000013685	ENSGT00940000153348.B	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.e	ENSGT00940000170421
Otophysi	ANCESTRAL SPECIES	213	ENSGT00940000163866.a.a	ENSGT00940000162303.a.b	ENSGT00940000156211.a.b	ENSGT00390000008538	ENSGT00940000158279	ENSGT00940000155265.b.a	ENSGT00940000164582.b	ENSGT00940000153348.B	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.e	ENSGT00940000170421
Characiphysae	ANCESTRAL SPECIES	101				ENSGT01030000235097	ENSGT01030000234994	ENSGT00390000012496.b.h	ENSGT00940000158350	ENSGT00950000182933.C.j.b	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.e	ENSGT00940000170421	ENSGT00940000155604	ENSGT00390000004912	ENSGT00940000155601.h	ENSGT00940000155638.wb.a.a	ENSGT00950000182917.b.a.a	ENSGT00940000155295.z	ENSGT00940000163206.b.a.b	ENSGT00940000159287.m	ENSGT00940000156352	ENSGT00940000156453.a	ENSGT00940000156037.a.f	ENSGT00940000155981.g	ENSGT01030000234624.b.b.c.b
Channel catfish	MODERN SPECIES	26	ENSIPUG00000010458	ENSIPUG00000010478	ENSIPUG00000010487	ENSIPUG00000010502	ENSIPUG00000010511	ENSIPUG00000010515	vangl2 (ENSIPUG00000010524)	arhgef11 (ENSIPUG00000010584)	MYADM (ENSIPUG00000010829)	ENSIPUG00000010840	ADGRL2 (ENSIPUG00000010883)	ENSIPUG00000010903	ENSIPUG00000010914	Znf830 (ENSIPUG00000010922)	ENSIPUG00000010929	rpe65 (ENSIPUG00000010948) #22	RNF11 (ENSIPUG00000011002)	ENSIPUG00000011034	ABCF3 (ENSIPUG00000011054)	polr2d (ENSIPUG00000011192)	CACNA1E (ENSIPUG00000011237)	ENSIPUG00000011325	ENSIPUG00000011362	ttc39c (ENSIPUG00000011413)	OSBPL1A (ENSIPUG00000011468)	HRH3 (ENSIPUG00000011514)	ZNF521 (ENSIPUG00000011537)	ss18 (ENSIPUG00000011614)	KCTD1 (ENSIPUG00000011667)	aqp4 (ENSIPUG00000011700)	CDH2 (ENSIPUG00000011722)
Characiphysae_b	ANCESTRAL SPECIES	109				ENSGT01030000235097	ENSGT01030000234994	ENSGT00390000012496.b.h	ENSGT00940000158350	ENSGT00950000182933.C.j.b	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.e	ENSGT00940000170421	ENSGT00940000155604	ENSGT00390000004912	ENSGT00940000155601.h	ENSGT00940000155638.wb.a.a	ENSGT00950000182917.b.a.a	ENSGT00940000155295.z	ENSGT00940000163206.b.a.b	ENSGT00940000159287.m	ENSGT00940000156352	ENSGT00940000156453.a	ENSGT00940000156037.a.f	ENSGT00940000155981.g	ENSGT01030000234624.b.b.c.b
Electric eel	MODERN SPECIES	709														ENSEEEG00000019397	ENSEEEG00000019398	rpe65a (ENSEEEG00000019399) #22	RNF11 (ENSEEEG00000019400)	ABCF3 (ENSEEEG00000019403)	polr2d (ENSEEEG00000019452)	ENSEEEG00000019457	ENSEEEG00000019459	ENSEEEG00000019461	ENSEEEG00000019471	TTC39C (ENSEEEG00000019473)	ENSEEEG00000019474
Characoidei	ANCESTRAL SPECIES	204				ENSGT01030000234540.B.a	ENSGT00390000012496.b.h	ENSGT00940000158350	ENSGT00950000182933.C.j.a.a	ENSGT01100000263538.A.a.a.a.f.a.a	ENSGT00940000177597	ENSGT00940000156348.B	ENSGT01030000235262	ENSGT00390000011196	ENSGT00390000012151	ENSGT00950000182928.B.d.a	ENSGT00730000110872.b.db	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.e	ENSGT00940000170421	ENSGT00940000155604	ENSGT00390000004912	ENSGT00940000155601.h	ENSGT00940000155638.wb.a.b	ENSGT00940000155638.wb.a.a	ENSGT00950000182917.b.a.a	ENSGT00940000155295.z	ENSGT00940000163206.b.a.b	ENSGT00940000158492.a
Red-bellied piranha	MODERN SPECIES	219	ENSPNAG00000019166	vangl2 (ENSPNAG00000019150)	ENSPNAG00000019099	MYADM (ENSPNAG00000018674)	ENSPNAG00000003544	ENSPNAG00000018647	ENSPNAG00000018635	ENSPNAG00000018629	ENSPNAG00000005363	ENSPNAG00000018594	ENSPNAG00000018525	EFCAB14 (ENSPNAG00000018512)	ZNF830 (ENSPNAG00000018500)	ENSPNAG00000018491	ENSPNAG00000018440	rpe65a (ENSPNAG00000018422) #22	RNF11 (ENSPNAG00000018375)	ENSPNAG00000018354	ABCF3 (ENSPNAG00000018337)	polr2d (ENSPNAG00000018246)	ENSPNAG00000018231	CACNA1E (ENSPNAG00000003508)	ENSPNAG00000017559	TTC39C (ENSPNAG00000017326)	ENSPNAG00000017216	OSBPL1A (ENSPNAG00000017207)	ENSPNAG00000017093	ENSPNAG00000017082
Mexicana tetra	MODERN SPECIES	7	capn1 (ENSAMXG00000007948)	dusp19b (ENSAMXG00000007960)	ENSAMXG00000007973	pnp5a (ENSAMXG00000007985)	ENSAMXG00000042574	KCNJ10 (ENSAMXG00000039870)	ENSAMXG00000036409	ENSAMXG00000036277	ENSAMXG00000039272	ENSAMXG00000008032	ENSAMXG00000043992	EFCAB14 (ENSAMXG00000041820)	ZNF830 (ENSAMXG00000032927)	ENSAMXG00000008607	ENSAMXG00000008655	rpe65a (ENSAMXG00000008745) #22	RNF11 (ENSAMXG00000036992)	ENSAMXG00000008928	ABCF3 (ENSAMXG00000008937)	polr2d (ENSAMXG00000008954)	ENSAMXG00000033815	CACNA1E (ENSAMXG00000008956)	ENSAMXG00000030561	ZNF521 (ENSAMXG00000009262)	ENSAMXG00000039172	ss18 (ENSAMXG00000043355)	KCTD1 (ENSAMXG00000040013)	AQP4 (ENSAMXG00000009377)	ENSAMXG00000038431	CDH2 (ENSAMXG00000007485)	ENSAMXG00000035641
Cyprinoidei	ANCESTRAL SPECIES	140	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574.c	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000154150.hf.a	ENSGT00390000007688.a.b	ENSGT00950000183036.a.a.h	ENSGT00940000165852	ENSGT00940000163111.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00940000175752	ENSGT00390000013685	ENSGT00950000182913.B.e #22	ENSGT00940000156352	ENSGT00940000159287.m	ENSGT00940000155638.wb.a	ENSGT00940000155601.h	ENSGT00390000004912.g.a	ENSGT00940000155604	ENSGT00940000155295.z	ENSGT00940000163206.b.a.b
Cyprininae	ANCESTRAL SPECIES	66	ENSGT00940000154843.F.c.a.b	ENSGT00940000157354.j.b	ENSGT00940000154150.hf.a	ENSGT00390000007688.a.b.a	ENSGT00950000183036.a.a.h	ENSGT00940000165852.c	ENSGT00940000153348.B	ENSGT00940000156348.B.m.b	ENSGT01030000235262	ENSGT00940000158038.c.b.a	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a.f.b	ENSGT00940000175752	ENSGT00390000013685	ENSGT00950000182913.B.e #22	ENSGT00940000158749.r.a	ENSGT01030000234624.b.b.c.b.c	ENSGT00940000156352.h.a	ENSGT00940000159287.m.c	ENSGT00940000163206.b.a.b.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a	ENSGT00940000155295.z	ENSGT00940000155604	ENSGT00390000004912.g.a	ENSGT00940000155601.h.d	ENSGT00940000155638.wb.a.d	ENSGT00390000008538	ENSGT00940000156211.a.b.b	ENSGT00940000162303.a.b.b	ENSGT00940000163866.a.a
Cyprininae_a	ANCESTRAL SPECIES	98	ENSGT00940000154843.F.c.a.b	ENSGT00940000157354.j.b	ENSGT00940000154150.hf.a	ENSGT00390000007688.a.b.a	ENSGT00950000183036.a.a.h	ENSGT00940000165852.c	ENSGT00940000153348.B.c	ENSGT00940000156348.B.m.b	ENSGT01030000235262	ENSGT00940000158038.c.b.a	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a.f.b	ENSGT00940000175752	ENSGT00390000013685.a	ENSGT00950000182913.B.e #22	ENSGT00940000158749.r.a	ENSGT01030000234624.b.b.c.b.c	ENSGT00940000159287.m.c	ENSGT00940000163206.b.a.b.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a	ENSGT00940000155295.z	ENSGT00940000155604	ENSGT00390000004912.g.a	ENSGT00940000155601.h.d	ENSGT00940000155638.wb.a.d	ENSGT00390000008538	ENSGT00940000156211.a.b.b	ENSGT00940000162937.a.b.d	ENSGT00940000159059.p	ENSGT00940000159347.g
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	21	pth1r (ENSCCRG00000000322)	tmie (ENSCCRG00000061065)	ENSCCRG00000064351	higd1a (ENSCCRG00000061634)	ENSCCRG00000004133	slc22a23 (ENSCCRG00000000245)	ENSCCRG00000077145	ssx2ipa (ENSCCRG00000020755)	ENSCCRG00000068981	exosc4 (ENSCCRG00000068106)	ENSCCRG00000000653	prkacbb (ENSCCRG00000058517)	dab1b (ENSCCRG00000058535)	si:ch211-188c16.1 (ENSCCRG00000021893)	ENSCCRG00000064432	rpe65a (ENSCCRG00000021653) #22	ENSCCRG00000021904	ENSCCRG00000021915	ss18 (ENSCCRG00000068968)	ENSCCRG00000027393	ENSCCRG00000062837	ENSCCRG00000001024	ENSCCRG00000078875	ENSCCRG00000033449	ENSCCRG00000025150	ENSCCRG00000069215	ENSCCRG00000080387	ENSCCRG00000068936	ENSCCRG00000072419	foxf2a (ENSCCRG00000077342)	irf4a (ENSCCRG00000005329)
Common carp reference	MODERN SPECIES	29	tubb2 (ENSCCRG00000082419)	ssx2ipa (ENSCCRG00000000282)	ENSCCRG00000055008	ENSCCRG00000058328	exosc4 (ENSCCRG00000063514)	ENSCCRG00000020992	ENSCCRG00000008791	ENSCCRG00000072928	ENSCCRG00000082743	prkacbb (ENSCCRG00000021027)	dab1b (ENSCCRG00000021428)	c8b (ENSCCRG00000021460)	C8A (ENSCCRG00000021535)	si:ch211-188c16.1 (ENSCCRG00000021545)	ENSCCRG00000021578	rpe65a (ENSCCRG00000069901) #22	ENSCCRG00000074260	ENSCCRG00000029618	ENSCCRG00000029615	ENSCCRG00000061493	ss18 (ENSCCRG00000067471)	ENSCCRG00000078030	ZNF521 (ENSCCRG00000053000)	ENSCCRG00000032417	ENSCCRG00000077956	OSBPL1A (ENSCCRG00000055923)	ENSCCRG00000031379	polr2d (ENSCCRG00000031380)	ENSCCRG00000081672	ENSCCRG00000055458	wrnip1 (ENSCCRG00000058569)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	280					ENSSGRG00000007160	exosc4 (ENSSGRG00000007159)	ENSSGRG00000006977	ENSSGRG00000006964	prkacbb (ENSSGRG00000006107)	dab1b (ENSSGRG00000006105)	c8b (ENSSGRG00000006039)	C8A (ENSSGRG00000005965)	ENSSGRG00000005958	ENSSGRG00000005944	rpe65a (ENSSGRG00000005943) #22	rpe65a (ENSSGRG00000005942) #22	ENSSGRG00000005936	ZMYND8 (ENSSGRG00000002164)	dido1 (ENSSGRG00000002078)	ENSSGRG00000002071	PRKCD (ENSSGRG00000002049)	SFMBT1 (ENSSGRG00000001339)	stimate (ENSSGRG00000001205)	ENSSGRG00000001196	tmcc1b (ENSSGRG00000001179)	qrich1 (ENSSGRG00000053035)	rpusd4 (ENSSGRG00000053031)	twf2b (ENSSGRG00000053028)	cishb (ENSSGRG00000053026)	uba3 (ENSSGRG00000052706)	tmf1 (ENSSGRG00000052691)
Golden-line barbel	MODERN SPECIES	280						ENSSGRG00000007160	exosc4 (ENSSGRG00000007159)	ENSSGRG00000006977	ENSSGRG00000006964	prkacbb (ENSSGRG00000006107)	dab1b (ENSSGRG00000006105)	c8b (ENSSGRG00000006039)	C8A (ENSSGRG00000005965)	ENSSGRG00000005958	ENSSGRG00000005944	rpe65a (ENSSGRG00000005943) #22	rpe65a (ENSSGRG00000005942) #22	ENSSGRG00000005936	ZMYND8 (ENSSGRG00000002164)	dido1 (ENSSGRG00000002078)	ENSSGRG00000002071	PRKCD (ENSSGRG00000002049)	SFMBT1 (ENSSGRG00000001339)	stimate (ENSSGRG00000001205)	ENSSGRG00000001196	tmcc1b (ENSSGRG00000001179)	qrich1 (ENSSGRG00000053035)	rpusd4 (ENSSGRG00000053031)	twf2b (ENSSGRG00000053028)	cishb (ENSSGRG00000053026)	uba3 (ENSSGRG00000052706)
Goldfish	MODERN SPECIES	19	slc22a23 (ENSCARG00000023035)	ENSCARG00000023077	ENSCARG00000023086	ssx2ipa (ENSCARG00000023098)	MCOLN3 (ENSCARG00000023120)	ENSCARG00000023190	exosc4 (ENSCARG00000023221)	ENSCARG00000010757	ENSCARG00000013216	prkacbb (ENSCARG00000013297)	dab1b (ENSCARG00000015748)	c8b (ENSCARG00000015777)	C8A (ENSCARG00000015847)	ENSCARG00000015872	GPAA1 (ENSCARG00000015879)	rpe65a (ENSCARG00000015917) #22	ENSCARG00000015956	ENSCARG00000015964	ENSCARG00000015999	ss18 (ENSCARG00000016010)	ZNF521 (ENSCARG00000016058)	ENSCARG00000016074	ENSCARG00000016081	OSBPL1A (ENSCARG00000016105)	ABCF3 (ENSCARG00000016430)	POLR2D (ENSCARG00000016494)	CACNA1E (ENSCARG00000016598)	ENSCARG00000017465	ENSCARG00000017496	wrnip1 (ENSCARG00000017504)	MYLK4 (ENSCARG00000017517)
Zebrafish	MODERN SPECIES	11	DSP (ENSDARG00000022309)	slc22a23 (ENSDARG00000078856)	tubb2 (ENSDARG00000039522)	ssx2ipa (ENSDARG00000039521)	ENSDARG00000078363	ENSDARG00000077130	exosc4 (ENSDARG00000103432)	ADGRL2 (ENSDARG00000075899)	ENSDARG00000111712	prkacbb (ENSDARG00000059125)	dab1b (ENSDARG00000003290)	c8a (ENSDARG00000039516)	c8b (ENSDARG00000039517)	si:ch211-188c16.1 (ENSDARG00000077288)	GPAA1 (ENSDARG00000074571)	rpe65a (ENSDARG00000007480) #22	ss18 (ENSDARG00000002970)	ZNF521 (ENSDARG00000116769)	ABCF3 (ENSDARG00000089705)	ENSDARG00000053746	ENSDARG00000045137	polr2d (ENSDARG00000076509)	ENSDARG00000095614	ENSDARG00000022615	si:ch211-241e1.5 (ENSDARG00000008906)	ENSDARG00000098661	ripk1l (ENSDARG00000006677)	dusp22b (ENSDARG00000039850)	irf4a (ENSDARG00000006560)	ENSDARG00000098888	foxq1a (ENSDARG00000030896)
Clupeiformes	ANCESTRAL SPECIES	191											ENSGT00940000156450.d	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038.c.b	ENSGT00950000182913.B.e #22	ENSGT00730000110988.wb.b.e	ENSGT00940000170421	ENSGT00530000063497.b	ENSGT00940000165852	ENSGT00950000183036.a.a.h	ENSGT00390000007688.a.b	ENSGT00940000154150	ENSGT00940000157354.j	ENSGT00940000154843.F.c.a	ENSGT00940000156328.a.a.b	ENSGT00940000158092.p	ENSGT00940000157394.b	ENSGT00940000154872.A	ENSGT00940000156080.k	ENSGT00940000155842.t
Atlantic herring	MODERN SPECIES	17	ENSCHAG00000008341	MEP1B (ENSCHAG00000008256)	PHLPP1 (ENSCHAG00000008085)	PHACTR1 (ENSCHAG00000008026)	ENSCHAG00000007997	adcy1b (ENSCHAG00000007463)	igfbp1b (ENSCHAG00000007437)	IGFBP3 (ENSCHAG00000006509)	TNS3 (ENSCHAG00000005515)	DSP (ENSCHAG00000003527)	ENSCHAG00000003418	ENSCHAG00000003398	C8A (ENSCHAG00000003365)	c8b (ENSCHAG00000003222)	dab1b (ENSCHAG00000003066)	rpe65a (ENSCHAG00000001421) #22	ENSCHAG00000001294	ENSCHAG00000001264	ENSCHAG00000001004	ENSCHAG00000000637	ENSCHAG00000027533	CDH2 (ENSCHAG00000026938)	AQP4 (ENSCHAG00000026833)	KCTD1 (ENSCHAG00000026830)	PSMA8 (ENSCHAG00000026807)	ss18 (ENSCHAG00000026788)	ZNF521 (ENSCHAG00000026779)	ENSCHAG00000026766	OSBPL1A (ENSCHAG00000026437)	ENSCHAG00000026374	ENSCHAG00000026372
Denticle herring	MODERN SPECIES	14	nmt2 (ENSDCDG00000034166)	ENSDCDG00000034150	acbd7 (ENSDCDG00000034144)	crot (ENSDCDG00000034134)	abcb4 (ENSDCDG00000030357)	rundc3b (ENSDCDG00000030056)	slc25a40 (ENSDCDG00000030052)	dbf4 (ENSDCDG00000030051)	ADAM22 (ENSDCDG00000026924)	ENSDCDG00000026841	PLPP3 (ENSDCDG00000026831)	ENSDCDG00000026827	C8A (ENSDCDG00000026826)	c8b (ENSDCDG00000026817)	dab1b (ENSDCDG00000026787)	rpe65a (ENSDCDG00000026226) #22	TMEM107 (ENSDCDG00000026220)	aurkb (ENSDCDG00000026219)	aurkb (ENSDCDG00000026218)	RNF11 (ENSDCDG00000026217)	ENSDCDG00000026215	ENSDCDG00000026214	ENSDCDG00000026202	ssx2ipa (ENSDCDG00000026191)	tubb2 (ENSDCDG00000026185)	slc22a23 (ENSDCDG00000026183)	DSP (ENSDCDG00000024080)	TNS3 (ENSDCDG00000022743)	IGFBP3 (ENSDCDG00000022153)	igfbp1b (ENSDCDG00000021949)	adcy1b (ENSDCDG00000021929)
Osteoglossocephalai	ANCESTRAL SPECIES	140						ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00940000155042.a.a	ENSGT00390000001724.l	ENSGT00940000155042.a.b	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194
Clupeocephala	ANCESTRAL SPECIES	103	ENSGT00940000159078	ENSGT01010000222545	ENSGT00940000156348.A	ENSGT00940000158252	ENSGT00530000064273.a.a	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.cb	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00940000155042.a.a	ENSGT00390000001724.l	ENSGT00940000155042.a.b	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194
Otomorpha	ANCESTRAL SPECIES	53	ENSGT01010000222545	ENSGT00940000156348.A	ENSGT01030000235287	ENSGT00940000158252	ENSGT00530000064273.a.a	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.cb	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00940000155042.a.a	ENSGT00390000001724.l	ENSGT00940000155042.a.b	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194
Clupeiformes	ANCESTRAL SPECIES	111	ENSGT00940000163111.a.b	ENSGT00940000159078	ENSGT00940000156348.A	ENSGT01030000235287	ENSGT00940000158252	ENSGT00530000064273.a.a	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b.cb	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00390000001724.l	ENSGT00940000155042.a.a	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194	ENSGT00730000110988.wb.b.f
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000024249	ENSCHAG00000023364	ENSCHAG00000023292	ENSCHAG00000021549	ENSCHAG00000021491	ENSCHAG00000021484	ADGRL2 (ENSCHAG00000015107)	adgrl4 (ENSCHAG00000014849)	vtg3 (ENSCHAG00000012438)	negr1 (ENSCHAG00000012385)	zranb2 (ENSCHAG00000012367)	PTGER3 (ENSCHAG00000012359)	ankrd13c (ENSCHAG00000012050)	LRRC7 (ENSCHAG00000011575)	depdc1a (ENSCHAG00000011503) #21	rpe65b (ENSCHAG00000010933) #22	si:ch211-198n5.11 (ENSCHAG00000010738)	fnbp1l (ENSCHAG00000010108)	bcar3 (ENSCHAG00000009829)	paox1 (ENSCHAG00000009791)	zgc:171480 (ENSCHAG00000009784)	slc5a9 (ENSCHAG00000009121)	gclm (ENSCHAG00000009037)	ENSCHAG00000009014	spata6 (ENSCHAG00000008998)	AGBL4 (ENSCHAG00000008915)	elavl4 (ENSCHAG00000008272)	dmrta2 (ENSCHAG00000008219)	faf1 (ENSCHAG00000005915)	cdkn2c (ENSCHAG00000005802)	ENSCHAG00000005784
Denticle herring	MODERN SPECIES	4	ttll7 (ENSDCDG00000029661)	ADGRL2 (ENSDCDG00000029791)	ENSDCDG00000033766	adgrl4 (ENSDCDG00000033788)	vtg3 (ENSDCDG00000033876)	vtg3 (ENSDCDG00000034550)	negr1 (ENSDCDG00000034960)	zranb2 (ENSDCDG00000034966)	PTGER3 (ENSDCDG00000034969)	cthl (ENSDCDG00000034987)	ankrd13c (ENSDCDG00000003135)	srsf11 (ENSDCDG00000003231)	lrrc40 (ENSDCDG00000003268)	LRRC7 (ENSDCDG00000003363)	depdc1a (ENSDCDG00000003571) #21	rpe65c (ENSDCDG00000003616) #22	si:ch211-198n5.11 (ENSDCDG00000003959)	fnbp1l (ENSDCDG00000004000)	bcar3 (ENSDCDG00000004556)	paox1 (ENSDCDG00000004570)	zgc:171480 (ENSDCDG00000004575)	slc5a9 (ENSDCDG00000004636)	gclm (ENSDCDG00000005066)	ENSDCDG00000005072	spata6 (ENSDCDG00000005081)	AGBL4 (ENSDCDG00000005104)	bend5 (ENSDCDG00000005117)	elavl4 (ENSDCDG00000005159)	dmrta2 (ENSDCDG00000005360)	faf1 (ENSDCDG00000005390)	cdkn2c (ENSDCDG00000010020)
Otophysi	ANCESTRAL SPECIES	240															ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00940000154690	ENSGT00950000182888.a.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00940000155751.a	ENSGT00950000182917.a.b.a	ENSGT00730000110988.wb.a	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724.l	ENSGT00940000155042.a.a	ENSGT00530000063821.a
Characiphysae	ANCESTRAL SPECIES	30	ENSGT00940000159912	ENSGT00940000157078	ENSGT01100000263518.B.b.a.a	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780	ENSGT01030000234564.a.a.b.a.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000012166.i	ENSGT00390000012166.j	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a.a	ENSGT00940000154690	ENSGT00950000182888.a.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00940000155751.a	ENSGT00950000182917.a.b.a	ENSGT00730000110988.wb.a	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724.l	ENSGT00940000155042.a.a	ENSGT00530000063821.a
Characiphysae_b	ANCESTRAL SPECIES	34	ENSGT00940000159912	ENSGT00940000157078	ENSGT01100000263518.B.b.a.a	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780	ENSGT01030000234564.a.a.b.a.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000012166.i	ENSGT00390000012166.j	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a.a	ENSGT00940000154690	ENSGT00950000182888.a.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00940000155751.a	ENSGT00950000182917.a.b.a	ENSGT00730000110988.wb.a	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724.l	ENSGT00940000155042.a.a	ENSGT00530000063821.a
Characoidei	ANCESTRAL SPECIES	77															ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a.b	ENSGT00940000164186.a.a	ENSGT00940000154690	ENSGT00950000182888.a.a.b	ENSGT01030000234965	ENSGT00940000155751.a	ENSGT00950000182917.a.b.a	ENSGT00730000110988.wb.a	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724.l	ENSGT00940000155042.a.a
Red-bellied piranha	MODERN SPECIES	28														ENSPNAG00000016404	depdc1a (ENSPNAG00000016414) #21	rpe65b (ENSPNAG00000016468) #22	si:ch211-198n5.11 (ENSPNAG00000016655)	si:ch211-198n5.11 (ENSPNAG00000016691)	osbpl9 (ENSPNAG00000016711)	tor3a (ENSPNAG00000016760)	ENSPNAG00000016813	EPS15 (ENSPNAG00000016839)	TTC39A (ENSPNAG00000016968)	rnf11b (ENSPNAG00000016982)	cdkn2c (ENSPNAG00000016988)	faf1 (ENSPNAG00000017029)	dmrta2 (ENSPNAG00000017040)	elavl4 (ENSPNAG00000017169)	bend5 (ENSPNAG00000017186)	AGBL4 (ENSPNAG00000017209)	spata6 (ENSPNAG00000017223)
Electric eel	MODERN SPECIES	251	ENSEEEG00000006794	ENSEEEG00000006792	GLS2 (ENSEEEG00000006783)	spryd4 (ENSEEEG00000006766)	porcn (ENSEEEG00000006758)	cpt2 (ENSEEEG00000006753)	cpt2 (ENSEEEG00000006751)	ENSEEEG00000006750	magoh (ENSEEEG00000006749)	uck2a (ENSEEEG00000006732)	tmco1 (ENSEEEG00000006730)	aldh9a1a.1 (ENSEEEG00000006687)	ENSEEEG00000006677	ENSEEEG00000006676	depdc1a (ENSEEEG00000006652) #21	rpe65b (ENSEEEG00000006617) #22	si:ch211-198n5.11 (ENSEEEG00000006614)	osbpl9 (ENSEEEG00000006606)	tor3a (ENSEEEG00000006594)	calr (ENSEEEG00000006592)	ENSEEEG00000006583	TTC39A (ENSEEEG00000006581)	ENSEEEG00000006580
Cyprinoidei	ANCESTRAL SPECIES	7	ENSGT00940000160546	ENSGT00950000183142.a.a	ENSGT00390000016784	ENSGT00390000009578	ENSGT00390000017443	ENSGT01030000234573.A.b.b.b.k	ENSGT00940000158739.c	ENSGT00390000014771.b.b	ENSGT00940000157368.m	ENSGT00940000155674.uc	ENSGT01050000244838.H.c.a	ENSGT00390000009065	ENSGT00390000002743	ENSGT00940000165045	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00940000154690.a	ENSGT00950000182888.a.a.b	ENSGT00950000182915.b.b.a.a	ENSGT00940000155751.a	ENSGT00950000182917.a.b.a	ENSGT00730000110988.wb.a	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724.l.f	ENSGT00390000001724.l.e	ENSGT00940000155042.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	531															ENSGT00950000182976.b.a.b #21	ENSGT00950000182913.B.f.a #22	ENSGT00940000164186.a	ENSGT00940000154690.a.a	ENSGT00950000182888.a.a.b.d	ENSGT00950000182915.b.b.a.a.ab.b	ENSGT00940000155751.a.b	ENSGT00950000182917.a.b.a.h	ENSGT00730000110988.wb.a.a	ENSGT00940000160194.g.a	ENSGT00940000154831.e	ENSGT00940000161649.c.a	ENSGT00940000157399.g.b	ENSGT00940000155042.a.a.b	ENSGT00530000063821.a.a	ENSGT00650000094816	ENSGT00510000047658.a
Goldfish	MODERN SPECIES	48	skia (ENSCARG00000003266)	DIMT1 (ENSCARG00000003252)	pola2 (ENSCARG00000002680)	cenph (ENSCARG00000002619)	mrps36 (ENSCARG00000002610)	mier3b (ENSCARG00000002587)	plk2b (ENSCARG00000002122)	rab3c (ENSCARG00000002027)	PDE4D (ENSCARG00000001072)	elovl7a (ENSCARG00000000867)	ENSCARG00000000861	ENSCARG00000000857	ndufaf2 (ENSCARG00000000852)	smim15 (ENSCARG00000000846)	depdc1a (ENSCARG00000000766) #21	RPE65 (ENSCARG00000000457) #22	si:ch211-198n5.11 (ENSCARG00000023538)	osbpl9 (ENSCARG00000023118)	tor3a (ENSCARG00000023059)	calr (ENSCARG00000023036)	ENSCARG00000022966	TTC39A (ENSCARG00000020363)	rnf11b (ENSCARG00000020251)	cdkn2c (ENSCARG00000020244)	faf1 (ENSCARG00000020005)	dmrta2 (ENSCARG00000019977)	elavl4 (ENSCARG00000019666)	agbl4 (ENSCARG00000019615)	serping1 (ENSCARG00000019595)	igf3 (ENSCARG00000019581)	atp2b3a (ENSCARG00000019486)
Cyprininae_a	ANCESTRAL SPECIES	319	ENSGT00940000160546.l	ENSGT00950000183142.a.a.a.a	ENSGT00390000016784.f	ENSGT00390000009578	ENSGT00390000017443.kb	ENSGT00390000017443.jb.a	ENSGT01030000234573.A.b.b.b.k.b	ENSGT00940000158739.c.a	ENSGT00390000014771.b.b.j	ENSGT00940000157368.m.a	ENSGT00940000155674.uc.b	ENSGT01050000244838.H.c.a.a	ENSGT00390000009065.b	ENSGT00390000002743.c.a	ENSGT00950000182976.b.a.b #21	ENSGT00950000182913.B.f.a #22	ENSGT00940000164186.a	ENSGT00940000154690.a.a	ENSGT00950000182888.a.a.b.d	ENSGT00950000182915.b.b.a.a.ab.b	ENSGT00940000155751.a.b	ENSGT00950000182917.a.b.a.h	ENSGT00730000110988.wb.a.a	ENSGT00940000160194.g.a	ENSGT00940000154831.e	ENSGT00940000161649.c.a	ENSGT00940000157399.g.b
Common carp reference	MODERN SPECIES	23	skia (ENSCCRG00000082769)	dimt1l (ENSCCRG00000019513)	pola2 (ENSCCRG00000052606)	cenph (ENSCCRG00000055667)	mrps36 (ENSCCRG00000030515)	mier3b (ENSCCRG00000067226)	plk2b (ENSCCRG00000004136)	si:dkey-190g11.3 (ENSCCRG00000004285)	rab3c (ENSCCRG00000004288)	PDE4D (ENSCCRG00000054656)	ENSCCRG00000056002	elovl7a (ENSCCRG00000060874)	ercc8 (ENSCCRG00000047149)	ndufaf2 (ENSCCRG00000075295)	depdc1a (ENSCCRG00000029667) #21	ENSCCRG00000029698 #22	si:ch211-198n5.11 (ENSCCRG00000029793)	osbpl9 (ENSCCRG00000006487)	tor3a (ENSCCRG00000001394)	calr (ENSCCRG00000001424)	EPS15 (ENSCCRG00000001486)	TTC39A (ENSCCRG00000029816)	cdkn2c (ENSCCRG00000053613)	faf1 (ENSCCRG00000011112)	dmrta2 (ENSCCRG00000066483)	elavl4 (ENSCCRG00000081829)	AGBL4 (ENSCCRG00000073136)	spata6 (ENSCCRG00000057791)	dnttip2 (ENSCCRG00000023426)	gclm (ENSCCRG00000023416)	slc5a9 (ENSCCRG00000023332)
Golden-line barbel	MODERN SPECIES	271	si:ch211-150o23.2 (ENSSGRG00000008347)	ENSSGRG00000008342	skia (ENSSGRG00000008338)	dimt1l (ENSSGRG00000008225)	pola2 (ENSSGRG00000008075)	cenph (ENSSGRG00000008072)	mrps36 (ENSSGRG00000008071)	mier3b (ENSSGRG00000007872)	plk2b (ENSSGRG00000007313)	si:dkey-190g11.3 (ENSSGRG00000007290)	rab3c (ENSSGRG00000007226)	PDE4D (ENSSGRG00000006946)	elovl7a (ENSSGRG00000006864)	ercc8 (ENSSGRG00000006723)	depdc1a (ENSSGRG00000006618) #21	RPE65 (ENSSGRG00000003855) #22	si:ch211-198n5.11 (ENSSGRG00000003761)	osbpl9 (ENSSGRG00000003719)	tor3a (ENSSGRG00000003708)	ENSSGRG00000003707	ENSSGRG00000003389	TTC39A (ENSSGRG00000002888)	rnf11b (ENSSGRG00000002868)	cdkn2c (ENSSGRG00000002867)	faf1 (ENSSGRG00000002701)	dmrta2 (ENSSGRG00000002680)	dmrta2 (ENSSGRG00000002677)	elavl4 (ENSSGRG00000002675)	ELAVL4 (ENSSGRG00000002673)	agbl4 (ENSSGRG00000002671)
Cyprininae	ANCESTRAL SPECIES	6	ENSGT00980000202325	ENSGT00390000017443.jb.b	ENSGT01030000234573.A.b.b.b.k.a	ENSGT00940000158739.c.b	ENSGT00940000157368.m.b	ENSGT00940000155674.uc.a	ENSGT01050000244838.H.c.a.b	ENSGT00390000009065.a	ENSGT00390000002743.c.b	ENSGT00390000008903	ENSGT00390000009065.b	ENSGT00390000002743.c.a	ENSGT00940000165045	ENSGT00390000002743.d	ENSGT00950000182976.b.a.a #21	ENSGT00950000182913.B.f.b #22	ENSGT00940000154690.a.b	ENSGT00950000182888.a.a.b.c	ENSGT00950000182915.b.b.a.a.ab.a	ENSGT00940000155751.a.a	ENSGT00950000182917.a.b.a.g	ENSGT00730000110988.wb.a.b	ENSGT00940000160194.g.b	ENSGT00940000154831.f	ENSGT00940000161649.c.b	ENSGT00940000157399.g.a	ENSGT00390000001724.l.e	ENSGT00940000155042.a.a.a	ENSGT00530000063821.a.b	ENSGT00510000048142	ENSGT00510000047658.b
Goldfish	MODERN SPECIES	61	prkcz (ENSCARG00000020077)	skia (ENSCARG00000020053)	dimt1l (ENSCARG00000019852)	pola2 (ENSCARG00000019281)	ENSCARG00000019238	mrps36 (ENSCARG00000019231)	mier3b (ENSCARG00000019177)	plk2b (ENSCARG00000019127)	rab3c (ENSCARG00000019113)	PDE4D (ENSCARG00000018530)	elovl7a (ENSCARG00000018480)	ercc8 (ENSCARG00000018155)	ndufaf2 (ENSCARG00000018082)	SMIM15 (ENSCARG00000018051)	depdc1a (ENSCARG00000069551) #21	RPE65 (ENSCARG00000069418) #22	osbpl9 (ENSCARG00000069216)	tor3a (ENSCARG00000069153)	calr (ENSCARG00000069141)	ENSCARG00000069032	TTC39A (ENSCARG00000068860)	rnf11b (ENSCARG00000068806)	cdkn2c (ENSCARG00000068799)
Cyprininae_a	ANCESTRAL SPECIES	115	ENSGT00940000157634.c.a	ENSGT00940000153497.A.f	ENSGT00940000160546.k	ENSGT00950000183142.a.a.a.b	ENSGT00390000016784.e	ENSGT00390000017443.jb.b	ENSGT01030000234573.A.b.b.b.k.a	ENSGT00940000158739.c.b	ENSGT00940000157368.m.b	ENSGT00940000155674.uc.a	ENSGT01050000244838.H.c.a.b	ENSGT00390000009065.a	ENSGT00940000165045	ENSGT00390000002743.d	ENSGT00950000182976.b.a.a #21	ENSGT00950000182913.B.f.b #22	ENSGT00940000154690.a.b	ENSGT00950000182888.a.a.b.c	ENSGT00950000182915.b.b.a.a.ab.a	ENSGT00940000155751.a.a	ENSGT00950000182917.a.b.a.g	ENSGT00730000110988.wb.a.b	ENSGT00940000160194.g.b	ENSGT00940000154831.f	ENSGT00940000161649.c.b	ENSGT00940000157399.g.a	ENSGT00390000001724.l.e	ENSGT00940000155042.a.a.a	ENSGT00530000063821.a.b	ENSGT00510000048142	ENSGT00510000047658.b
Common carp reference	MODERN SPECIES	17	ENSCCRG00000034244	st6galnac5b (ENSCCRG00000082876)	prkcz (ENSCCRG00000037963)	skia (ENSCCRG00000066503)	dimt1l (ENSCCRG00000069840)	pola2 (ENSCCRG00000030499)	cenph (ENSCCRG00000030511)	mrps36 (ENSCCRG00000063688)	mier3b (ENSCCRG00000030521)	plk2b (ENSCCRG00000036725)	rab3c (ENSCCRG00000001296)	PDE4D (ENSCCRG00000001498)	ercc8 (ENSCCRG00000009730)	smim15 (ENSCCRG00000034829)	depdc1a (ENSCCRG00000034832) #21	ENSCCRG00000004212 #22	osbpl9 (ENSCCRG00000006861)	tor3a (ENSCCRG00000002014)	calr (ENSCCRG00000002023)	ENSCCRG00000002042	TTC39A (ENSCCRG00000042342)	rnf11b (ENSCCRG00000077802)	cdkn2c (ENSCCRG00000064172)	faf1 (ENSCCRG00000011182)	dmrta2 (ENSCCRG00000082606)	elavl4 (ENSCCRG00000038365)	BEND5 (ENSCCRG00000060382)	spata6 (ENSCCRG00000021474)	gclm (ENSCCRG00000021467)	slc5a9 (ENSCCRG00000004378)	zgc:171480 (ENSCCRG00000074058)
Golden-line barbel	MODERN SPECIES	15	ENSSGRG00000012426	dimt1l (ENSSGRG00000012316)	pola2 (ENSSGRG00000012049)	mrps36 (ENSSGRG00000012035)	mier3b (ENSSGRG00000012034)	mier3b (ENSSGRG00000012032)	plk2b (ENSSGRG00000011208)	si:dkey-190g11.3 (ENSSGRG00000011205)	rab3c (ENSSGRG00000011204)	PDE4D (ENSSGRG00000009930)	elovl7a (ENSSGRG00000009903)	ercc8 (ENSSGRG00000009726)	smim15 (ENSSGRG00000009725)	ndufaf2 (ENSSGRG00000009724)	depdc1a (ENSSGRG00000009723) #21	RPE65 (ENSSGRG00000009718) #22	ENSSGRG00000009716	osbpl9 (ENSSGRG00000009352)	ENSSGRG00000009099	ENSSGRG00000008561	TTC39A (ENSSGRG00000008336)	rnf11b (ENSSGRG00000008334)	cdkn2c (ENSSGRG00000008333)	faf1 (ENSSGRG00000007162)	dmrta2 (ENSSGRG00000007156)	elavl4 (ENSSGRG00000006913)	AGBL4 (ENSSGRG00000006900)	spata6 (ENSSGRG00000006899)	ENSSGRG00000006897	gclm (ENSSGRG00000006895)	slc5a9 (ENSSGRG00000006504)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	23	dimt1l (ENSDARG00000005057)	pola2 (ENSDARG00000015070)	cenph (ENSDARG00000094892)	mrps36 (ENSDARG00000079823)	mier3b (ENSDARG00000021288)	plk2b (ENSDARG00000019130)	si:dkey-190g11.3 (ENSDARG00000025914)	rab3c (ENSDARG00000014462)	PDE4D (ENSDARG00000032761)	elovl7a (ENSDARG00000069279)	ENSDARG00000111321	ercc8 (ENSDARG00000069283)	ndufaf2 (ENSDARG00000069286)	smim15 (ENSDARG00000086699)	depdc1a (ENSDARG00000018165) #21	rpe65c (ENSDARG00000054420) #22	rpe65b (ENSDARG00000094752) #22	si:ch211-198n5.11 (ENSDARG00000054400)	osbpl9 (ENSDARG00000069298)	tor3a (ENSDARG00000079308)	calr (ENSDARG00000076290)	EPS15 (ENSDARG00000078216)	TTC39A (ENSDARG00000074126)	rnf11b (ENSDARG00000040635)	cdkn2c (ENSDARG00000057610)	faf1 (ENSDARG00000022418)	dmrta2 (ENSDARG00000039412)	elavl4 (ENSDARG00000045639)	agbl4 (ENSDARG00000068050)	bend5 (ENSDARG00000075624)	AGBL4 (ENSDARG00000110838)
Zebrafish	MODERN SPECIES	23	pola2 (ENSDARG00000015070)	cenph (ENSDARG00000094892)	mrps36 (ENSDARG00000079823)	mier3b (ENSDARG00000021288)	plk2b (ENSDARG00000019130)	si:dkey-190g11.3 (ENSDARG00000025914)	rab3c (ENSDARG00000014462)	PDE4D (ENSDARG00000032761)	elovl7a (ENSDARG00000069279)	ENSDARG00000111321	ercc8 (ENSDARG00000069283)	ndufaf2 (ENSDARG00000069286)	smim15 (ENSDARG00000086699)	depdc1a (ENSDARG00000018165) #21	rpe65c (ENSDARG00000054420) #22	rpe65b (ENSDARG00000094752) #22	si:ch211-198n5.11 (ENSDARG00000054400)	osbpl9 (ENSDARG00000069298)	tor3a (ENSDARG00000079308)	calr (ENSDARG00000076290)	EPS15 (ENSDARG00000078216)	TTC39A (ENSDARG00000074126)	rnf11b (ENSDARG00000040635)	cdkn2c (ENSDARG00000057610)	faf1 (ENSDARG00000022418)	dmrta2 (ENSDARG00000039412)	elavl4 (ENSDARG00000045639)	agbl4 (ENSDARG00000068050)	bend5 (ENSDARG00000075624)	AGBL4 (ENSDARG00000110838)	spata6 (ENSDARG00000021115)
Euteleosteomorpha	ANCESTRAL SPECIES	157												ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00940000155042.a.a	ENSGT00390000001724.l	ENSGT00940000155042.a.b	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194
Protacanthopterygii	ANCESTRAL SPECIES	104					ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a.l	ENSGT00950000183189.a.b.a.k	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156968.p	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00940000155042.a.a	ENSGT00390000001724.l	ENSGT00940000155042.a.b	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	363							ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000160614.j	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c #21	ENSGT00950000182913.B.f.e #22	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k	ENSGT00730000110988.wb.a.d	ENSGT00950000182917.a.b.a.i
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000160614.j	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c #21	ENSGT00950000182913.B.f.e #22	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k	ENSGT00730000110988.wb.a.d	ENSGT00950000182917.a.b.a.i
Salmo	ANCESTRAL SPECIES	20	ENSGT00950000182988.a.a.b.j	ENSGT00530000063816.d.n	ENSGT00390000003020.c	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000160614.j	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c #21	ENSGT00950000182913.B.f.e #22	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k	ENSGT00730000110988.wb.a.d	ENSGT00950000182917.a.b.a.i	ENSGT00940000155751.a.d	ENSGT00950000182915.b.b.a.a.cb.a	ENSGT00950000182888.a.a.b.e
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000086964	gpc5b (ENSSSAG00000043871)	gpc1a (ENSSSAG00000042394)	ephb1 (ENSSSAG00000041250)	ENSSSAG00000041180	ENSSSAG00000041164	ttc14 (ENSSSAG00000041099)	ENSSSAG00000118997	sox2 (ENSSSAG00000088464)	ENSSSAG00000085029	ENSSSAG00000084166	ENSSSAG00000041043	ENSSSAG00000040989	LRRC7 (ENSSSAG00000012965)	DEPDC1 (ENSSSAG00000011177) #21	RPE65 (ENSSSAG00000008787) #22	fnbp1l (ENSSSAG00000080709)	bcar3 (ENSSSAG00000080653)	zgc:171480 (ENSSSAG00000080639)	gclm (ENSSSAG00000094075)	dnttip2 (ENSSSAG00000080634)	bend5 (ENSSSAG00000080616)	elavl4 (ENSSSAG00000080587)	dmrta2 (ENSSSAG00000108883)	faf1 (ENSSSAG00000080523)	cdkn2c (ENSSSAG00000103621)	ENSSSAG00000117935	TTC39A (ENSSSAG00000080465)	EPS15 (ENSSSAG00000080308)	calr (ENSSSAG00000080203)	tor3a (ENSSSAG00000105817)
River trout	MODERN SPECIES	33	ing5a (ENSSTUG00000021215)	pak2b (ENSSTUG00000020803)	aqp12 (ENSSTUG00000020780)	rpp21 (ENSSTUG00000020755)	ENSSTUG00000020748	gpc5b (ENSSTUG00000020690)	gpc1a (ENSSTUG00000020640)	EPHB1 (ENSSTUG00000020230)	ENSSTUG00000020199	LRRC24 (ENSSTUG00000020186)	ttc14 (ENSSTUG00000020135)	lrrc40 (ENSSTUG00000020074)	ENSSTUG00000020057	LRRC7 (ENSSTUG00000019742)	depdc1a (ENSSTUG00000019684) #21	RPE65 (ENSSTUG00000019395) #22	fnbp1l (ENSSTUG00000019335)	bcar3 (ENSSTUG00000019270)	zgc:171480 (ENSSTUG00000019258)	gclm (ENSSTUG00000019242)	dnttip2 (ENSSTUG00000019225)	bend5 (ENSSTUG00000019218)	ENSSTUG00000019215	ENSSTUG00000019213	AGBL4 (ENSSTUG00000019133)	ENSSTUG00000019127	elavl4 (ENSSTUG00000018579)	dmrta2 (ENSSTUG00000018551)	faf1 (ENSSTUG00000017265)	cdkn2c (ENSSTUG00000017218)	rnf11b (ENSSTUG00000017202)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c #21	ENSGT00950000182913.B.f.e #22	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k	ENSGT00730000110988.wb.a.d	ENSGT00950000182917.a.b.a.i
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000022904	gpc1a (ENSOMYG00000022966)	ENSOMYG00000064696	ENSOMYG00000023572	ENSOMYG00000068701	ENSOMYG00000012367	ENSOMYG00000025776	ENSOMYG00000025794	ENSOMYG00000025802	ENSOMYG00000025899	ENSOMYG00000026170	ENSOMYG00000057336	LRRC7 (ENSOMYG00000026410)	ENSOMYG00000055547	ENSOMYG00000026674 #21	RPE65 (ENSOMYG00000027040) #22	fnbp1l (ENSOMYG00000027907)	ENSOMYG00000028020	zgc:171480 (ENSOMYG00000028076)	dnttip2 (ENSOMYG00000028177)	bend5 (ENSOMYG00000002676)	ENSOMYG00000055718	elavl4 (ENSOMYG00000002966)	dmrta2 (ENSOMYG00000003182)	faf1 (ENSOMYG00000003274)	ENSOMYG00000074743	cdkn2c (ENSOMYG00000003329)	ENSOMYG00000069988	rnf11b (ENSOMYG00000050765)	TTC39A (ENSOMYG00000003607)	ENSOMYG00000004069
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c #21	ENSGT00950000182913.B.f.e #22	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k	ENSGT00950000182917.a.b.a.i	ENSGT00940000155751.a.d	ENSGT00950000182915.b.b.a.a.cb.a
Coho salmon	MODERN SPECIES	1	gpc5b (ENSOKIG00005045379)	gpc1a (ENSOKIG00005045403)	ENSOKIG00005045424	EPHB1 (ENSOKIG00005045460)	ENSOKIG00005045550	ENSOKIG00005045556	ENSOKIG00005045564	LRRC24 (ENSOKIG00005045578)	ENSOKIG00005045586	ttc14 (ENSOKIG00005045600)	ENSOKIG00005045700	LRRC40 (ENSOKIG00005045734)	LRRC7 (ENSOKIG00005045795)	DEPDC1 (ENSOKIG00005045926) #21	ENSOKIG00005045956	RPE65 (ENSOKIG00005045996) #22	fnbp1l (ENSOKIG00005046644)	bcar3 (ENSOKIG00005046712)	ENSOKIG00005046725	ENSOKIG00005046729	gclm (ENSOKIG00005046734)	dnttip2 (ENSOKIG00005046742)	AGBL4 (ENSOKIG00005046746)	bend5 (ENSOKIG00005046749)	agbl4 (ENSOKIG00005046754)	elavl4 (ENSOKIG00005046766)	dmrta2 (ENSOKIG00005046825)	faf1 (ENSOKIG00005046866)	cdkn2c (ENSOKIG00005047369)	ENSOKIG00005001887	ENSOKIG00005001904
Chinook salmon	MODERN SPECIES	2897															depdc1a (ENSOTSG00005047790) #21	RPE65 (ENSOTSG00005047775) #22	fnbp1l (ENSOTSG00005047774)
Huchen	MODERN SPECIES	398								ENSHHUG00000050079	LRRC24 (ENSHHUG00000050076)	ttc14 (ENSHHUG00000050074)	fxr1 (ENSHHUG00000050063)	ENSHHUG00000050059	sox2 (ENSHHUG00000050049)	LRRC7 (ENSHHUG00000049968)	ENSHHUG00000049946 #21	RPE65 (ENSHHUG00000049867) #22	ENSHHUG00000049862	fnbp1l (ENSHHUG00000049849)	bcar3 (ENSHHUG00000049830)	zgc:171480 (ENSHHUG00000049818)	gclm (ENSHHUG00000049802)	dnttip2 (ENSHHUG00000049791)	AGBL4 (ENSHHUG00000049771)
Salmoninae	ANCESTRAL SPECIES	115							ENSGT00940000160141.e.b.a	ENSGT00390000013701.t	ENSGT00950000183189.a.b.a.k	ENSGT00940000154384	ENSGT00940000160614.i	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d #21	ENSGT00950000182913.B.f.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00940000155042.a.a.f	ENSGT00390000001724.l.b.b	ENSGT00940000157399.a	ENSGT00940000161649.f	ENSGT00940000154831.h.a	ENSGT00940000160194.l	ENSGT00730000110988.wb.a.c
Huchen	MODERN SPECIES	289															depdc1a (ENSHHUG00000003263) #21	RPE65 (ENSHHUG00000003060) #22	si:ch211-198n5.11 (ENSHHUG00000003048)	fnbp1l (ENSHHUG00000002357)	bcar3 (ENSHHUG00000002347)	ENSHHUG00000002339	slc5a9 (ENSHHUG00000002065)	gclm (ENSHHUG00000002032)	spata6 (ENSHHUG00000001982)	bend5 (ENSHHUG00000001976)	AGBL4 (ENSHHUG00000001820)	elavl4 (ENSHHUG00000001695)	ENSHHUG00000001658	ENSHHUG00000001532	CARTPT (ENSHHUG00000001484)	ENSHHUG00000001481	ENSHHUG00000001474
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00390000013701.t	ENSGT00950000183189.a.b.a.k	ENSGT00940000154384	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d #21	ENSGT00950000182913.B.f.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f	ENSGT00390000001724.l.b.b	ENSGT00940000157399.a	ENSGT00940000161649.f	ENSGT00940000154831.h.a	ENSGT00940000160194.l
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00950000182988.a.a.b.i	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00950000183189.a.b.a.k.b.b	ENSGT00940000154384	ENSGT00950000183189.a.b.a.k.a	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d #21	ENSGT00950000182913.B.f.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f	ENSGT00940000157399.a	ENSGT00940000161649.f	ENSGT00940000154831.h.a	ENSGT00940000160194.l	ENSGT00730000110988.wb.a.c	ENSGT00950000182917.a.b.a.j
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00940000180153	ENSGT00950000183189.a.b.a.k.b.a	ENSGT00940000154384	ENSGT00950000183189.a.b.a.k.a	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d #21	ENSGT00950000182913.B.f.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.a.b	ENSGT00940000155042.a.a.f	ENSGT00940000157399.a	ENSGT00940000161649.f	ENSGT00940000154831.h.a	ENSGT00940000160194.l	ENSGT00730000110988.wb.a.c	ENSGT00950000182917.a.b.a.j
Coho salmon	MODERN SPECIES	4	gpc5b (ENSOKIG00005035079)	gpc1a (ENSOKIG00005034952)	ENSOKIG00005034923	ENSOKIG00005034896	EPHB1 (ENSOKIG00005034400)	ENSOKIG00005034359	LRRC24 (ENSOKIG00005034351)	ENSOKIG00005034304	fxr1 (ENSOKIG00005034123)	dnajc19 (ENSOKIG00005034062)	ENSOKIG00005034048	lrrc40 (ENSOKIG00005033596)	ENSOKIG00005033541	LRRC7 (ENSOKIG00005033328)	depdc1a (ENSOKIG00005033179) #21	RPE65 (ENSOKIG00005032666) #22	si:ch211-198n5.11 (ENSOKIG00005032544)	FNBP1L (ENSOKIG00005031481)	bcar3 (ENSOKIG00005031321)	ENSOKIG00005031306	slc5a9 (ENSOKIG00005031041)	gclm (ENSOKIG00005030983)	ENSOKIG00005030940	spata6 (ENSOKIG00005030930)	ENSOKIG00005030924	AGBL4 (ENSOKIG00005030839)	elavl4 (ENSOKIG00005030733)	dmrta2 (ENSOKIG00005030708)	faf1 (ENSOKIG00005030063)	cdkn2c (ENSOKIG00005030007)	rnf11b (ENSOKIG00005029989)
Chinook salmon	MODERN SPECIES	29	fxr1 (ENSOTSG00005031076)	sox2 (ENSOTSG00005031077)	lrrc40 (ENSOTSG00005031078)	ENSOTSG00005031265	nfil3-4 (ENSOTSG00005031267)	lingo3a (ENSOTSG00005031269)	org (ENSOTSG00005031270)	oaz1a (ENSOTSG00005031272)	amh (ENSOTSG00005031275)	DOT1L (ENSOTSG00005031276)	ell (ENSOTSG00005031283)	fkbp8 (ENSOTSG00005031304)	ssbp4 (ENSOTSG00005031318)	ENSOTSG00005031319	depdc1a (ENSOTSG00005031320) #21	RPE65 (ENSOTSG00005031467) #22	si:ch211-198n5.11 (ENSOTSG00005032130)	fnbp1l (ENSOTSG00005032192)	bcar3 (ENSOTSG00005032428)	slc5a9 (ENSOTSG00005032429)	gclm (ENSOTSG00005032760)	ENSOTSG00005032763	spata6 (ENSOTSG00005032767)	AGBL4 (ENSOTSG00005032773)	bend5 (ENSOTSG00005032775)	elavl4 (ENSOTSG00005032776)	ENSOTSG00005032921	GPR61 (ENSOTSG00005032922)	AMIGO1 (ENSOTSG00005032924)	ENSOTSG00005032925	sort1b (ENSOTSG00005032930)
Rainbow trout	MODERN SPECIES	26	gpc5b (ENSOMYG00000013692)	ENSOMYG00000068930	gpc1a (ENSOMYG00000013713)	ENSOMYG00000013782	ENSOMYG00000013852	ENSOMYG00000014127	ENSOMYG00000075544	ENSOMYG00000059700	ENSOMYG00000062422	ENSOMYG00000014274	ENSOMYG00000015299	LRRC40 (ENSOMYG00000015333)	LRRC7 (ENSOMYG00000015364)	ENSOMYG00000075779	depdc1a (ENSOMYG00000015417) #21	RPE65 (ENSOMYG00000015503) #22	si:ch211-198n5.11 (ENSOMYG00000015763)	ENSOMYG00000016042	ENSOMYG00000017088	ENSOMYG00000017216	ENSOMYG00000017784	gclm (ENSOMYG00000017785)	ENSOMYG00000017789	spata6 (ENSOMYG00000017805)	ENSOMYG00000057857	bend5 (ENSOMYG00000017858)	elavl4 (ENSOMYG00000017960)	ENSOMYG00000067290	dmrta2 (ENSOMYG00000017966)	faf1 (ENSOMYG00000018005)	cdkn2c (ENSOMYG00000018160)
Salmo	ANCESTRAL SPECIES	14	ENSGT00390000003020.d	ENSGT00530000063816.d.m	ENSGT01050000244955.b.c.c	ENSGT01050000244897.a.a.b.b.a	ENSGT00460000041630	ENSGT00940000155297.hb.b.b	ENSGT00990000204094.c.b	ENSGT00940000160141.e.b.a	ENSGT00390000013701.t	ENSGT00950000183189.a.b.a.k	ENSGT00940000154384	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d #21	ENSGT00950000182913.B.f.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00390000001724.l.b.b	ENSGT00940000157399.a	ENSGT00940000161649.f	ENSGT00940000154831.h.a	ENSGT00940000160194.l	ENSGT00730000110988.wb.a.c	ENSGT00950000182917.a.b.a.j
River trout	MODERN SPECIES	14	gpc5b (ENSSTUG00000035807)	gpc1a (ENSSTUG00000035823)	ENSSTUG00000035958	EPHB1 (ENSSTUG00000036005)	ENSSTUG00000037051	LRRC24 (ENSSTUG00000037062)	ttc14 (ENSSTUG00000037083)	fxr1 (ENSSTUG00000037446)	dnajc19 (ENSSTUG00000039802)	ENSSTUG00000039840	lrrc40 (ENSSTUG00000039866)	ENSSTUG00000039939	ENSSTUG00000039945	LRRC7 (ENSSTUG00000040027)	depdc1a (ENSSTUG00000040140) #21	RPE65 (ENSSTUG00000040173) #22	si:ch211-198n5.11 (ENSSTUG00000040753)	fnbp1l (ENSSTUG00000040947)	bcar3 (ENSSTUG00000041017)	zgc:171480 (ENSSTUG00000041056)	slc5a9 (ENSSTUG00000041092)	gclm (ENSSTUG00000041215)	ENSSTUG00000041234	spata6 (ENSSTUG00000041260)	bend5 (ENSSTUG00000041354)	elavl4 (ENSSTUG00000041687)	dmrta2 (ENSSTUG00000043322)	faf1 (ENSSTUG00000043360)	cdkn2c (ENSSTUG00000044064)	rnf11b (ENSSTUG00000044067)	TTC39A (ENSSTUG00000044079)
Atlantic salmon	MODERN SPECIES	1	gpc5b (ENSSSAG00000103799)	gpc1a (ENSSSAG00000043895)	ankmy1 (ENSSSAG00000044230)	ENSSSAG00000044376	ENSSSAG00000114736	ENSSSAG00000051282	ENSSSAG00000051296	ENSSSAG00000105616	ENSSSAG00000051511	ENSSSAG00000120735	ENSSSAG00000082201	lrrc2 (ENSSSAG00000060461)	LRRC7 (ENSSSAG00000060780)	DEPDC1 (ENSSSAG00000061391) #21	ENSSSAG00000062538	RPE65 (ENSSSAG00000112197) #22	fnbp1l (ENSSSAG00000062755)	bcar3 (ENSSSAG00000063319)	zgc:171480 (ENSSSAG00000063345)	slc5a9 (ENSSSAG00000063359)	gsh0 (ENSSSAG00000063809)	ENSSSAG00000087728	ENSSSAG00000063813	spata6 (ENSSSAG00000106644)	AGBL4 (ENSSSAG00000106741)	ENSSSAG00000090996	agbl4 (ENSSSAG00000063825)	ENSSSAG00000085418	elavl4 (ENSSSAG00000063874)	dmrta2 (ENSSSAG00000120235)	faf1 (ENSSSAG00000065255)
Northern pike	MODERN SPECIES	7	cep19 (ENSELUG00000013204)	pigx (ENSELUG00000013193)	pak2b (ENSELUG00000013169)	PTGER3 (ENSELUG00000013065)	zranb2 (ENSELUG00000013041)	EPHB1 (ENSELUG00000013008)	LRRC24 (ENSELUG00000012962)	ENSELUG00000000468	ttc14 (ENSELUG00000012936)	fxr1 (ENSELUG00000012917)	dnajc19 (ENSELUG00000012861)	sox2 (ENSELUG00000012841)	lrrc40 (ENSELUG00000012790)	LRRC7 (ENSELUG00000012686)	depdc1a (ENSELUG00000012378) #21	rpe65b (ENSELUG00000012274) #22	si:ch211-198n5.11 (ENSELUG00000001601)	mmachc (ENSELUG00000012175)	ENSELUG00000012158	ENSELUG00000012150	ENSELUG00000012123	IPO13 (ENSELUG00000001498)	pfas (ENSELUG00000011791)	ENSELUG00000011714	hook1 (ENSELUG00000011682)	cyp2n13 (ENSELUG00000011542)	cyp2ad3 (ENSELUG00000011482)	ENSELUG00000011369	ENSELUG00000011263	ENSELUG00000011204	rabggta (ENSELUG00000011184)
Acanthomorphata	ANCESTRAL SPECIES	221				ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000158520.f	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Percomorphaceae	ANCESTRAL SPECIES	32	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000158520.f	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t
Tiger tail seahorse	MODERN SPECIES	65	serpinb1 (ENSHCOG00000008969)	ENSHCOG00000008974	rad23ab (ENSHCOG00000008982)	EPS15L1 (ENSHCOG00000009026)	gfus.1 (ENSHCOG00000009035)	bmb (ENSHCOG00000009047)	pycr3 (ENSHCOG00000009058)	ENSHCOG00000009070	naprt (ENSHCOG00000009077)	ENSHCOG00000009087	ENSHCOG00000009206	ADCYAP1R1 (ENSHCOG00000009351)	ENSHCOG00000009385	aspm (ENSHCOG00000009448)	depdc1a (ENSHCOG00000009576) #21	rpe65b (ENSHCOG00000009617) #22	si:ch211-198n5.11 (ENSHCOG00000009855)	fnbp1l (ENSHCOG00000009923)	bcar3 (ENSHCOG00000009968)	hps3 (ENSHCOG00000010024)	ENSHCOG00000000316	ttc14 (ENSHCOG00000010117)	ENSHCOG00000010144	FXR1 (ENSHCOG00000010198)	fxr1 (ENSHCOG00000010273)	ENSHCOG00000010298	fxr1 (ENSHCOG00000010337)	dnajc19 (ENSHCOG00000010350)	ENSHCOG00000010353	sox2 (ENSHCOG00000010386)	ENSHCOG00000010410
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000158520.f	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000158520.f	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000158520.f	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Mangrove rivulus	MODERN SPECIES	491													ENSKMAG00000007087	ENSKMAG00000007137	depdc1a (ENSKMAG00000007232) #21	rpe65b (ENSKMAG00000007289) #22	si:ch211-198n5.11 (ENSKMAG00000007331)	fnbp1l (ENSKMAG00000007365)	bcar3 (ENSKMAG00000007427)	hps3 (ENSKMAG00000007461)	ENSKMAG00000007516
Turquoise killifish	MODERN SPECIES	1626	ENSNFUG00015009861	DNAI2A (ENSNFUG00015009869)	ENSNFUG00015009879	RGS13 (ENSNFUG00015009888)	RGS2 (ENSNFUG00015009895)	UCHL5 (ENSNFUG00015009918)	GLRX2 (ENSNFUG00015009999)	B3GALT2 (ENSNFUG00015010014)	ENSNFUG00015010019	ENSNFUG00015014048	aspm (ENSNFUG00015014069)	ENSNFUG00015014218	ENSNFUG00015014225	ENSNFUG00015014233	depdc1a (ENSNFUG00015014246) #21	rpe65b (ENSNFUG00015014334) #22	Nfu_g_1_002367 (ENSNFUG00015014722)	fnbp1l (ENSNFUG00015014883)	BCAR3 (ENSNFUG00015015037)	hps3 (ENSNFUG00015015133)	fxr1 (ENSNFUG00015015365)	DNAJC19 (ENSNFUG00015017077)	ENSNFUG00015017098	ENSNFUG00015017106	ATP11B (ENSNFUG00015017152)	MCCC1 (ENSNFUG00015017726)	ENSNFUG00015019482	ENSNFUG00015019487	KNG1 (ENSNFUG00015019491)	PIK3CA (ENSNFUG00015019503)	BX548160.2 (ENSNFUG00015019542)
Cyprinodontoidei	ANCESTRAL SPECIES	29									ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000159915.a	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00390000007991	ENSGT00940000161493	ENSGT00950000182946.lb.b.h	ENSGT00940000159127	ENSGT00940000156988	ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000159915.a	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00390000007991	ENSGT00940000161493	ENSGT00950000182946.lb.b.h	ENSGT00940000159127	ENSGT00940000156988	ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
NAME_6	ANCESTRAL SPECIES	387																ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384
Amazon molly	MODERN SPECIES	1006																rpe65b (ENSPFOG00000006647) #22	si:ch211-198n5.11 (ENSPFOG00000006928)	fnbp1l (ENSPFOG00000007104)	bcar3 (ENSPFOG00000007438)
Sailfin molly	MODERN SPECIES	1678																rpe65b (ENSPLAG00000022875) #22	si:ch211-198n5.11 (ENSPLAG00000022831)	fnbp1l (ENSPLAG00000022787)	sulf2a (ENSPLAG00000022702)
Guppy	MODERN SPECIES	456	ENSPREG00000000829	APC2 (ENSPREG00000000736)	ENSPREG00000000717	reep6 (ENSPREG00000000699)	ENSPREG00000000684	gpx7 (ENSPREG00000000663)	ENSPREG00000000633	ENSPREG00000000596	comp (ENSPREG00000000551)	tmem38a (ENSPREG00000000545)	smim7 (ENSPREG00000000542)	ENSPREG00000022870	ENSPREG00000022865	aspm (ENSPREG00000022836)	depdc1a (ENSPREG00000022815) #21	rpe65b (ENSPREG00000022806) #22	si:ch211-198n5.11 (ENSPREG00000022798)	fnbp1l (ENSPREG00000022786)	bcar3 (ENSPREG00000022769)	hps3 (ENSPREG00000022756)	ttc14 (ENSPREG00000022747)	fxr1 (ENSPREG00000022738)	dnajc19 (ENSPREG00000022727)	sox2 (ENSPREG00000022723)	ATP11B (ENSPREG00000022699)	mccc1 (ENSPREG00000022680)	ENSPREG00000022675	ENSPREG00000022657	ENSPREG00000022643	ENSPREG00000022632	ENSPREG00000022616
Platyfish	MODERN SPECIES	23	ENSXMAG00000011118	ENSXMAG00000011111	ENSXMAG00000021953	ARHGAP39 (ENSXMAG00000011225)	ENSXMAG00000021814	rad54l (ENSXMAG00000006083)	ENSXMAG00000016013	EPS15L1 (ENSXMAG00000021226)	DDX10 (ENSXMAG00000016515)	ENSXMAG00000012631	SZT2 (ENSXMAG00000028752)	ENSXMAG00000029261	ENSXMAG00000026966	aspm (ENSXMAG00000000723)	depdc1a (ENSXMAG00000000720) #21	rpe65b (ENSXMAG00000000719) #22	si:ch211-198n5.11 (ENSXMAG00000000716)	fnbp1l (ENSXMAG00000000711)	bcar3 (ENSXMAG00000000707)	hps3 (ENSXMAG00000000688)	ENSXMAG00000025704	ttc14 (ENSXMAG00000016060)	fxr1 (ENSXMAG00000000666)	dnajc19 (ENSXMAG00000000660)	sox2 (ENSXMAG00000020128)	ATP11B (ENSXMAG00000000614)	mccc1 (ENSXMAG00000000611)	ENSXMAG00000000609	PIK3CA (ENSXMAG00000000586)	ENSXMAG00000015188	ENSXMAG00000002519
NAME_4	ANCESTRAL SPECIES	62									ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00530000063460.B	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Mummichog	MODERN SPECIES	415								comp (ENSFHEG00000009461)	tmem38a (ENSFHEG00000009473)	smim7 (ENSFHEG00000009511)	ENSFHEG00000009527	ENSFHEG00000009542	ENSFHEG00000009607	ENSFHEG00000009654	ENSFHEG00000009676 #21	rpe65b (ENSFHEG00000009722) #22	si:ch211-198n5.11 (ENSFHEG00000009745)	fnbp1l (ENSFHEG00000009777)	bcar3 (ENSFHEG00000009874)	hps3 (ENSFHEG00000009916)	ENSFHEG00000009936
Sheepshead minnow	MODERN SPECIES	1167												ENSCVAG00000000441	ENSCVAG00000017297	ENSCVAG00000017351	depdc1a (ENSCVAG00000017368) #21	rpe65b (ENSCVAG00000017442) #22	si:ch211-198n5.11 (ENSCVAG00000017509)	fnbp1l (ENSCVAG00000017526)	bcar3 (ENSCVAG00000017542)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000157380	ENSGT00940000164081.b	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00950000182930.A.b.k.a	ENSGT00940000159036	ENSGT00940000157380	ENSGT00940000164081.b	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT01100000264681	ENSGT00390000013701.w	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a
Chinese medaka	MODERN SPECIES	971															depdc1a (ENSOSIG00000012743) #21	rpe65c (ENSOSIG00000012754) #22	fnbp1l (ENSOSIG00000012760)	bcar3 (ENSOSIG00000012792)	hps3 (ENSOSIG00000012897)	ENSOSIG00000013092	ENSOSIG00000013093	fxr1 (ENSOSIG00000013100)	dnajc19 (ENSOSIG00000015190)	ENSOSIG00000015197	ATP11B (ENSOSIG00000015204)
Japanese Medaka HdrR	MODERN SPECIES	18	brinp3a.1 (ENSORLG00000024057)	brinp3a.2 (ENSORLG00000012298)	ENSORLG00000024172	RGS13 (ENSORLG00000023386)	ENSORLG00000026170	ENSORLG00000021826	ENSORLG00000022173	ENSORLG00000030097	uchl5 (ENSORLG00000012257)	glrx2 (ENSORLG00000012223)	ENSORLG00000025926	b3galt2 (ENSORLG00000025428)	ENSORLG00000027370	aspm (ENSORLG00000012201)	depdc1a (ENSORLG00000012180) #21	rpe65b (ENSORLG00000012125) #22	si:ch211-198n5.11 (ENSORLG00000012062)	fnbp1l (ENSORLG00000012037)	bcar3 (ENSORLG00000011935)	hps3 (ENSORLG00000011881)	ENSORLG00000011842	ENSORLG00000029868	ttc14 (ENSORLG00000011825)	fxr1 (ENSORLG00000011787)	dnajc19 (ENSORLG00000026035)	ENSORLG00000023151	sox2 (ENSORLG00000011685)	ATP11B (ENSORLG00000025942)	mccc1 (ENSORLG00000011678)	ENSORLG00000025358	kng1 (ENSORLG00000011656)
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00940000156099	ENSGT00940000177827	ENSGT00940000158520.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT01050000245029.a	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202
Indian medaka	MODERN SPECIES	13	ENSOMEG00000013279	RGS13 (ENSOMEG00000013262)	ENSOMEG00000013248	uchl5 (ENSOMEG00000013224)	glrx2 (ENSOMEG00000013177)	b3galt2 (ENSOMEG00000013162)	ENSOMEG00000013071	ENSOMEG00000012774	ENSOMEG00000012759	ENSOMEG00000012738	ENSOMEG00000012689	ENSOMEG00000012650	ENSOMEG00000012637	aspm (ENSOMEG00000012594)	depdc1a (ENSOMEG00000012533) #21	rpe65b (ENSOMEG00000012468) #22	si:ch211-198n5.11 (ENSOMEG00000012358)	fnbp1l (ENSOMEG00000012284)	bcar3 (ENSOMEG00000012147)	gnb5a (ENSOMEG00000011983)	hps3 (ENSOMEG00000011957)	ENSOMEG00000011872	ttc14 (ENSOMEG00000011795)	fxr1 (ENSOMEG00000011753)	dnajc19 (ENSOMEG00000011655)	sox2 (ENSOMEG00000011636)	ATP11B (ENSOMEG00000011605)	mccc1 (ENSOMEG00000011470)	ENSOMEG00000011439	kng1 (ENSOMEG00000011412)	PIK3CA (ENSOMEG00000011383)
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000006850	ENSOJAG00000006837	RGS13 (ENSOJAG00000006827)	ENSOJAG00000006813	uchl5 (ENSOJAG00000006397)	glrx2 (ENSOJAG00000006369)	b3galt2 (ENSOJAG00000006360)	ENSOJAG00000006195	ENSOJAG00000006135	ENSOJAG00000006126	ENSOJAG00000006115	ENSOJAG00000006049	ENSOJAG00000006019	aspm (ENSOJAG00000005674)	depdc1a (ENSOJAG00000005643) #21	rpe65b (ENSOJAG00000004462) #22	si:ch211-198n5.11 (ENSOJAG00000004102)	fnbp1l (ENSOJAG00000003974)	bcar3 (ENSOJAG00000003879)	hps3 (ENSOJAG00000003815)	ENSOJAG00000003787	ttc14 (ENSOJAG00000022381)	fxr1 (ENSOJAG00000022030)	dnajc19 (ENSOJAG00000021937)	ENSOJAG00000021914	ATP11B (ENSOJAG00000021737)	mccc1 (ENSOJAG00000021188)	ENSOJAG00000021150	kng1 (ENSOJAG00000021146)	PIK3CA (ENSOJAG00000021116)	ENSOJAG00000021109
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Cichlidae	ANCESTRAL SPECIES	42	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00460000041630	ENSGT00940000154507.t	ENSGT00730000111202
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000174597	ENSGT00940000154967.a.b.a.b.`b.b	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.l	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.k	ENSGT00940000174597	ENSGT00950000182866.D.d.a.c.b.a.a.a.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.l	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.l	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT00940000164081.b	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00530000064692.B.b.a.d.a.a.a.b	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630
Zebra mbuna	MODERN SPECIES	133										ENSMZEG00005028039	ENSMZEG00005028038	ENSMZEG00005028037	ENSMZEG00005028036	aspm (ENSMZEG00005028035)	depdc1a (ENSMZEG00005028034) #21	rpe65b (ENSMZEG00005028033) #22	si:ch211-198n5.11 (ENSMZEG00005028032)	fnbp1l (ENSMZEG00005028031)	bcar3 (ENSMZEG00005028030)
Eastern happy	MODERN SPECIES	8	brinp3a.2 (ENSACLG00000025181)	ENSACLG00000025208	uchl5 (ENSACLG00000025233)	ENSACLG00000025271	RGS13 (ENSACLG00000025277)	ENSACLG00000025303	glrx2 (ENSACLG00000025312)	b3galt2 (ENSACLG00000025327)	ENSACLG00000025338	ENSACLG00000025359	ENSACLG00000025380	ENSACLG00000025388	ENSACLG00000025399	aspm (ENSACLG00000025411)	depdc1a (ENSACLG00000025455) #21	rpe65b (ENSACLG00000025478) #22	si:ch211-198n5.11 (ENSACLG00000025517)	fnbp1l (ENSACLG00000025531)	bcar3 (ENSACLG00000025641)	hps3 (ENSACLG00000025702)	ENSACLG00000025760	ENSACLG00000025775	ttc14 (ENSACLG00000025782)	fxr1 (ENSACLG00000025812)	dnajc19 (ENSACLG00000025865)	sox2 (ENSACLG00000025897)	ENSACLG00000025903	ENSACLG00000025904	ENSACLG00000025909	ENSACLG00000025947	ENSACLG00000025953
P. nyererei	MODERN SPECIES	728											NXPE3 (ENSPNYG00000011406)	ENSPNYG00000011384	ENSPNYG00000011370	ENSPNYG00000011351	depdc1a (ENSPNYG00000011321) #21	rpe65b (ENSPNYG00000011290) #22	si:ch211-198n5.11 (ENSPNYG00000011270)	fnbp1l (ENSPNYG00000011230)	bcar3 (ENSPNYG00000011169)	hps3 (ENSPNYG00000011131)
Burton s mouthbrooder	MODERN SPECIES	1187														ENSHBUG00000017106	depdc1a (ENSHBUG00000017059) #21	rpe65b (ENSHBUG00000017034) #22	si:ch211-198n5.11 (ENSHBUG00000016950)	fnbp1l (ENSHBUG00000016880)
Lyretail cichlid	MODERN SPECIES	343	brinp3a.2 (ENSNBRG00000021812)	RGS1 (ENSNBRG00000021799)	ENSNBRG00000021783	RGS13 (ENSNBRG00000021769)	ENSNBRG00000021750	uchl5 (ENSNBRG00000021721)	ENSNBRG00000021710	b3galt2 (ENSNBRG00000021706)	ENSNBRG00000021698	ENSNBRG00000021687	ENSNBRG00000021666	ENSNBRG00000021649	NXPE3 (ENSNBRG00000021635)	ENSNBRG00000021574	depdc1a (ENSNBRG00000021479) #21	rpe65b (ENSNBRG00000021436) #22	si:ch211-198n5.11 (ENSNBRG00000021401)	fnbp1l (ENSNBRG00000021354)	bcar3 (ENSNBRG00000021258)	hps3 (ENSNBRG00000021182)	ttc14 (ENSNBRG00000021095)	fxr1 (ENSNBRG00000021072)	dnajc19 (ENSNBRG00000021053)	sox2 (ENSNBRG00000021046)	ENSNBRG00000021036	ENSNBRG00000021026	ATP11B (ENSNBRG00000020967)	ENSNBRG00000020946	ENSNBRG00000020924	ENSNBRG00000020902	ZMAT3 (ENSNBRG00000020886)
Nile tilapia	MODERN SPECIES	8	cfhl4 (ENSONIG00000033270)	ENSONIG00000040706	ENSONIG00000034416	ENSONIG00000030219	ENSONIG00000010939	NXPE3 (ENSONIG00000003801)	ENSONIG00000041500	ENSONIG00000029115	ENSONIG00000038098	ENSONIG00000040498	NXPE3 (ENSONIG00000007980)	aspm (ENSONIG00000003791)	ENSONIG00000037532	f2r (ENSONIG00000016111)	depdc1a (ENSONIG00000003784) #21	rpe65b (ENSONIG00000003773) #22	si:ch211-198n5.11 (ENSONIG00000003770)	fnbp1l (ENSONIG00000003764)	bcar3 (ENSONIG00000003760)	hps3 (ENSONIG00000003752)	ENSONIG00000027731	b3gat1a (ENSONIG00000003750)	ENSONIG00000035489	ENSONIG00000041410	ENSONIG00000029705	ENSONIG00000029296	ttc14 (ENSONIG00000003747)	ENSONIG00000032390	fxr1 (ENSONIG00000003740)	dnajc19 (ENSONIG00000027409)	sox2 (ENSONIG00000039405)
Midas cichlid	MODERN SPECIES	487												ENSACIG00000023496	ENSACIG00000023493	aspm (ENSACIG00000023479)	depdc1a (ENSACIG00000023461) #21	rpe65c (ENSACIG00000023446) #22	si:ch211-198n5.11 (ENSACIG00000023426)	fnbp1l (ENSACIG00000023410)	bcar3 (ENSACIG00000023397)	cd248a (ENSACIG00000023389)	hps3 (ENSACIG00000023368)	ttc14 (ENSACIG00000023360)	fxr1 (ENSACIG00000023354)	dnajc19 (ENSACIG00000023350)	sox2 (ENSACIG00000023348)	ENSACIG00000023342	ATP11B (ENSACIG00000023329)	mccc1 (ENSACIG00000023146)	ENSACIG00000023097	ENSACIG00000023068	PIK3CA (ENSACIG00000023052)
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00940000157380	ENSGT00940000164081.b	ENSGT00940000154304.C	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000157380	ENSGT00940000164081.b	ENSGT00940000154304.C	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Amphiprion	ANCESTRAL SPECIES	203	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a.j	ENSGT00940000155117.f.a.i	ENSGT00940000154386.y.a	ENSGT00940000154386.y.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000016496	brinp3a.1 (ENSAPEG00000016472)	brinp3a.2 (ENSAPEG00000016411)	RGS1 (ENSAPEG00000016390)	ENSAPEG00000016383	RGS13 (ENSAPEG00000016374)	ENSAPEG00000016366	uchl5 (ENSAPEG00000016321)	glrx2 (ENSAPEG00000016311)	b3galt2 (ENSAPEG00000016292)	b3galt2 (ENSAPEG00000016284)	ENSAPEG00000016229	ENSAPEG00000016203	ENSAPEG00000016090	depdc1a (ENSAPEG00000015954) #21	rpe65c (ENSAPEG00000015903) #22	ENSAPEG00000015890	ENSAPEG00000015867	ENSAPEG00000015825	ENSAPEG00000015712	ENSAPEG00000015659	ENSAPEG00000015646	si:ch211-198n5.11 (ENSAPEG00000015606)	fnbp1l (ENSAPEG00000015551)	bcar3 (ENSAPEG00000015457)	ENSAPEG00000015442	hps3 (ENSAPEG00000015313)	ttc14 (ENSAPEG00000015072)	fxr1 (ENSAPEG00000014981)	dnajc19 (ENSAPEG00000014945)	sox2 (ENSAPEG00000014838)
Spiny chromis	MODERN SPECIES	1610										NOX5 (ENSAPOG00000022099)	dnaaf4 (ENSAPOG00000022122)	sycp3 (ENSAPOG00000022212)	ENSAPOG00000022240	ENSAPOG00000022295	depdc1a (ENSAPOG00000022327) #21	rpe65c (ENSAPOG00000022405) #22	ENSAPOG00000022421	ENSAPOG00000022431
Bicolor damselfish	MODERN SPECIES	2350														ENSSPAG00000014488	depdc1a (ENSSPAG00000014461) #21	rpe65c (ENSSPAG00000014415) #22
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000158520.f	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Siamese fighting fish	DUPLICATION
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	56																RPE65 (ENSBSLG00000005226) #22	ENSBSLG00000005522	si:ch211-198n5.11 (ENSBSLG00000005549)
Siamese fighting fish	MODERN SPECIES		dctd (ENSBSLG00000017363)	TENM3 (ENSBSLG00000018093)	ENSBSLG00000023318	ENSBSLG00000023348	ENSBSLG00000023472	ENSBSLG00000023480	ENSBSLG00000023488	ENSBSLG00000023530	ENSBSLG00000023543	vegfc (ENSBSLG00000023549)	ENSBSLG00000023584	vegfc (ENSBSLG00000023591)	ENSBSLG00000000125	ENSBSLG00000000158	ENSBSLG00000000194	RPE65 (ENSBSLG00000000251) #22	ENSBSLG00000000261	ENSBSLG00000000275	ENSBSLG00000000282	acot8 (ENSBSLG00000000289)	acot8 (ENSBSLG00000004970)	ENSBSLG00000005555	ENSBSLG00000005739	ENSBSLG00000005753	ENSBSLG00000006468	ENSBSLG00000006722	ENSBSLG00000006833	ENSBSLG00000006852	ENSBSLG00000006891	ENSBSLG00000006973	ENSBSLG00000006977
Siamese fighting fish	MODERN SPECIES	15	rgs16 (ENSBSLG00000010929)	rgs8 (ENSBSLG00000010925)	brinp3a.1 (ENSBSLG00000010700)	RGS1 (ENSBSLG00000010101)	ENSBSLG00000010092	RGS13 (ENSBSLG00000010069)	ENSBSLG00000010061	uchl5 (ENSBSLG00000009763)	glrx2 (ENSBSLG00000009688)	b3galt2 (ENSBSLG00000009583)	ENSBSLG00000009576	ENSBSLG00000009540	ENSBSLG00000009533	aspm (ENSBSLG00000009159)	depdc1a (ENSBSLG00000009033) #21	RPE65 (ENSBSLG00000008855) #22	si:ch211-198n5.11 (ENSBSLG00000008830)	fnbp1l (ENSBSLG00000008642)	bcar3 (ENSBSLG00000008468)	ENSBSLG00000008414	hps3 (ENSBSLG00000008206)	ttc14 (ENSBSLG00000008115)	fxr1 (ENSBSLG00000005633)	dnajc19 (ENSBSLG00000004844)	sox2 (ENSBSLG00000004745)	sox2 (ENSBSLG00000004255)	ATP11B (ENSBSLG00000003903)	mccc1 (ENSBSLG00000002699)	ENSBSLG00000002494	ENSBSLG00000002480	PIK3CA (ENSBSLG00000002314)
Climbing perch	MODERN SPECIES	17	RGS1 (ENSATEG00000027604)	RGS1 (ENSATEG00000029179)	RGS13 (ENSATEG00000025246)	ENSATEG00000001159	uchl5 (ENSATEG00000001112)	glrx2 (ENSATEG00000001047)	b3galt2 (ENSATEG00000001043)	ENSATEG00000027725	ENSATEG00000000392	ENSATEG00000000713	ENSATEG00000026162	ENSATEG00000028555	ENSATEG00000026295	aspm (ENSATEG00000000379)	depdc1a (ENSATEG00000000365) #21	ENSATEG00000000298 #22	si:ch211-198n5.11 (ENSATEG00000000222)	ENSATEG00000000143	ENSATEG00000000123	ENSATEG00000000110	ttc14 (ENSATEG00000000101)	fxr1 (ENSATEG00000022488)	dnajc19 (ENSATEG00000000021)	ATP11B (ENSATEG00000022414)	mccc1 (ENSATEG00000022375)	ENSATEG00000022365	ENSATEG00000022305	ENSATEG00000022254	ENSATEG00000022244	ENSATEG00000022229	ENSATEG00000022213
Zig-zag eel	MODERN SPECIES	18	rgs8 (ENSMAMG00000013347)	ENSMAMG00000013302	brinp3a.1 (ENSMAMG00000013265)	brinp3a.2 (ENSMAMG00000013230)	RGS1 (ENSMAMG00000026640)	ENSMAMG00000013180	RGS13 (ENSMAMG00000025084)	ENSMAMG00000013165	uchl5 (ENSMAMG00000013126)	glrx2 (ENSMAMG00000013113)	b3galt2 (ENSMAMG00000013098)	cfh (ENSMAMG00000012979)	ENSMAMG00000028004	aspm (ENSMAMG00000012926)	depdc1a (ENSMAMG00000012900) #21	ENSMAMG00000012864 #22	si:ch211-198n5.11 (ENSMAMG00000012852)	ENSMAMG00000012800	ENSMAMG00000012752	ENSMAMG00000012718	ttc14 (ENSMAMG00000012687)	fxr1 (ENSMAMG00000012607)	dnajc19 (ENSMAMG00000012673)	sox2 (ENSMAMG00000012589)	ATP11B (ENSMAMG00000012551)	mccc1 (ENSMAMG00000012532)	ENSMAMG00000012509	ENSMAMG00000012500	ENSMAMG00000012399	ENSMAMG00000012349	ENSMAMG00000012343
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00950000182930.B	ENSGT00940000155531.a.a
Turbot	MODERN SPECIES	3	rgs8 (ENSSMAG00000034333)	ENSSMAG00000018296	brinp3a.1 (ENSSMAG00000018477)	ENSSMAG00000037354	brinp3a.2 (ENSSMAG00000018500)	RGS1 (ENSSMAG00000018545)	ENSSMAG00000018558	uchl5 (ENSSMAG00000018584)	ENSSMAG00000018582	b3galt2 (ENSSMAG00000018609)	ENSSMAG00000034768	ENSSMAG00000018628	ENSSMAG00000026125	aspm (ENSSMAG00000018889)	depdc1a (ENSSMAG00000019006) #21	ENSSMAG00000019019 #22	ENSSMAG00000022429	si:ch211-198n5.11 (ENSSMAG00000019050)	ENSSMAG00000019085	ENSSMAG00000019102	ENSSMAG00000019148	ENSSMAG00000019215	ENSSMAG00000023012	ttc14 (ENSSMAG00000019224)	fxr1 (ENSSMAG00000019240)	dnajc19 (ENSSMAG00000019301)	sox2 (ENSSMAG00000019309)	ENSSMAG00000019337	ENSSMAG00000027499	ENSSMAG00000035807	ENSSMAG00000019363
Tongue sole	MODERN SPECIES	11	ENSCSEG00000001967	rad23ab (ENSCSEG00000001932)	EPS15L1 (ENSCSEG00000001868)	klf2a (ENSCSEG00000001862)	ENSCSEG00000001858	RGS13 (ENSCSEG00000001854)	ENSCSEG00000001849	uchl5 (ENSCSEG00000001834)	glrx2 (ENSCSEG00000001831)	b3galt2 (ENSCSEG00000001829)	cfh (ENSCSEG00000001810)	ENSCSEG00000001805	aspm (ENSCSEG00000001749)	ENSCSEG00000001739	depdc1a (ENSCSEG00000001736) #21	rpe65b (ENSCSEG00000001723) #22	si:ch211-198n5.11 (ENSCSEG00000001712)	fnbp1l (ENSCSEG00000001689)	bcar3 (ENSCSEG00000001676)	hps3 (ENSCSEG00000001648)	ttc14 (ENSCSEG00000001645)	ENSCSEG00000001642	dnajc19 (ENSCSEG00000001630)	fxr1 (ENSCSEG00000001597)	sox2 (ENSCSEG00000001590)	ATP11B (ENSCSEG00000001572)	ENSCSEG00000001563	ENSCSEG00000001559	PATJ (ENSCSEG00000001551)	tm2d1 (ENSCSEG00000001546)	nfia (ENSCSEG00000001541)
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00980000199212	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B
Barramundi perch	MODERN SPECIES	118	brinp3a.1 (ENSLCAG00010021634)	brinp3a.2 (ENSLCAG00010021631)	RGS1 (ENSLCAG00010021629)	ENSLCAG00010021624	RGS13 (ENSLCAG00010021622)	ENSLCAG00010021619	uchl5 (ENSLCAG00010021557)	glrx2 (ENSLCAG00010021543)	b3galt2 (ENSLCAG00010021541)	ENSLCAG00010021533	cfhl4 (ENSLCAG00010021511)	ENSLCAG00010021504	ENSLCAG00010021501	aspm (ENSLCAG00010021497)	depdc1a (ENSLCAG00010021490) #21	rpe65b (ENSLCAG00010021483) #22	si:ch211-198n5.11 (ENSLCAG00010021465)	fnbp1l (ENSLCAG00010021458)	bcar3 (ENSLCAG00010021449)	hps3 (ENSLCAG00010021441)
Seriola	ANCESTRAL SPECIES		ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00980000199212	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B
Greater amberjack	MODERN SPECIES															aspm (ENSSDUG00000017053)	depdc1a (ENSSDUG00000017031) #21	rpe65b (ENSSDUG00000016938) #22	si:ch211-198n5.11 (ENSSDUG00000016890)	fnbp1l (ENSSDUG00000016812)	ENSSDUG00000016801	bcar3 (ENSSDUG00000016748)	hps3 (ENSSDUG00000016706)	ENSSDUG00000016687	ttc14 (ENSSDUG00000016642)	ENSSDUG00000016630	fxr1 (ENSSDUG00000016557)	dnajc19 (ENSSDUG00000016541)	sox2 (ENSSDUG00000016532)	ATP11B (ENSSDUG00000016508)	mccc1 (ENSSDUG00000016424)	ENSSDUG00000016401	ENSSDUG00000016284
Yellowtail amberjack	MODERN SPECIES	3176	ENSSLDG00000017551	brinp3a.1 (ENSSLDG00000017598)	brinp3a.2 (ENSSLDG00000017627)	RGS1 (ENSSLDG00000017693)	ENSSLDG00000017760	RGS13 (ENSSLDG00000017780)	ENSSLDG00000017798	uchl5 (ENSSLDG00000017814)	glrx2 (ENSSLDG00000017890)	b3galt2 (ENSSLDG00000017900)	cfhl1 (ENSSLDG00000017908)	ENSSLDG00000017934	ENSSLDG00000017953	aspm (ENSSLDG00000017974)	depdc1a (ENSSLDG00000018016) #21	rpe65b (ENSSLDG00000018072) #22	si:ch211-198n5.11 (ENSSLDG00000018130)	fnbp1l (ENSSLDG00000018163)	bcar3 (ENSSLDG00000018222)	hps3 (ENSSLDG00000018261)	ENSSLDG00000018350	ENSSLDG00000018364	fxr1 (ENSSLDG00000018386)	dnajc19 (ENSSLDG00000018409)	sox2 (ENSSLDG00000018420)	ATP11B (ENSSLDG00000018445)	mccc1 (ENSSLDG00000018498)	ENSSLDG00000018523	ENSSLDG00000018538	PIK3CA (ENSSLDG00000018558)	ENSSLDG00000018593
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000164081.b	ENSGT00940000154304.C	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.a	ENSGT00940000154386	ENSGT00560000077332	ENSGT00390000004554.`b.a.b	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT01070000253867.b	ENSGT00390000015458	ENSGT00390000004746	ENSGT00940000167364	ENSGT00940000157354.i	ENSGT00940000154843.F.c.b	ENSGT00390000009122	ENSGT00940000155842.s	ENSGT00940000156080.l	ENSGT00940000154872.B	ENSGT00940000157394.a	ENSGT00940000158092.o
Fugu	MODERN SPECIES	12	rgs8 (ENSTRUG00000004764)	brinp3a.1 (ENSTRUG00000004748)	brinp3a.2 (ENSTRUG00000004397)	ENSTRUG00000020222	RGS13 (ENSTRUG00000021667)	ENSTRUG00000003726	uchl5 (ENSTRUG00000019878)	glrx2 (ENSTRUG00000003061)	b3galt2 (ENSTRUG00000003025)	ENSTRUG00000023447	aspm (ENSTRUG00000002737)	ENSTRUG00000026818	ENSTRUG00000029509	depdc1a (ENSTRUG00000004792) #21	ENSTRUG00000028066	rpe65b (ENSTRUG00000032369) #22	si:ch211-198n5.11 (ENSTRUG00000005872)	fnbp1l (ENSTRUG00000006058)	bcar3 (ENSTRUG00000006679)	APC2 (ENSTRUG00000030454)	ENSTRUG00000007296	wdr18 (ENSTRUG00000007466)	ENSTRUG00000030073	ENSTRUG00000031399	TMEM259 (ENSTRUG00000007665)	med16 (ENSTRUG00000007850)	ENSTRUG00000030709	palm1a (ENSTRUG00000008119)	ENSTRUG00000029933	trmt13 (ENSTRUG00000008400)	lrrc39 (ENSTRUG00000008499)
Tetraodon	MODERN SPECIES		ENSTNIG00000012341	ENSTNIG00000012340	brinp3a.2 (ENSTNIG00000012339)	RGS13 (ENSTNIG00000012338)	ENSTNIG00000012337	uchl5 (ENSTNIG00000012336)	glrx2 (ENSTNIG00000012335)	b3galt2 (ENSTNIG00000012334)	ENSTNIG00000012333	ENSTNIG00000012331	ENSTNIG00000012332	aspm (ENSTNIG00000012330)	ENSTNIG00000012329	ENSTNIG00000012328	depdc1a (ENSTNIG00000012327) #21	rpe65c (ENSTNIG00000012326) #22	si:ch211-198n5.11 (ENSTNIG00000012325)	fnbp1l (ENSTNIG00000012324)	bcar3 (ENSTNIG00000012323)	ENSTNIG00000012322	hps3 (ENSTNIG00000012321)	ENSTNIG00000012320	BPHL (ENSTNIG00000012319)	SLC22A23 (ENSTNIG00000012318)	DSP (ENSTNIG00000012317)	tbc1d7 (ENSTNIG00000012316)	PHACTR1 (ENSTNIG00000012315)	sirt5 (ENSTNIG00000012314)	adcy1a (ENSTNIG00000006449)	igfbp1a (ENSTNIG00000000228)	igfbp3 (ENSTNIG00000006450)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a
Ballan wrasse	MODERN SPECIES	99	brinp3a.1 (ENSLBEG00000003602)	brinp3a.2 (ENSLBEG00000003638)	RGS1 (ENSLBEG00000003702)	ENSLBEG00000003723	RGS13 (ENSLBEG00000003749)	ENSLBEG00000003763	uchl5 (ENSLBEG00000003786)	glrx2 (ENSLBEG00000003827)	b3galt2 (ENSLBEG00000003837)	ENSLBEG00000003876	ENSLBEG00000003949	ENSLBEG00000003965	ENSLBEG00000003997	ENSLBEG00000004061	depdc1a (ENSLBEG00000004155) #21	rpe65b (ENSLBEG00000004286) #22	ENSLBEG00000004357	si:ch211-198n5.11 (ENSLBEG00000004415)	fnbp1l (ENSLBEG00000004447)	bcar3 (ENSLBEG00000004492)	ENSLBEG00000004547	pycr3 (ENSLBEG00000004569)	bmb (ENSLBEG00000004641)	GFUS (ENSLBEG00000004675)	SERPINB1 (ENSLBEG00000004707)	GFUS (ENSLBEG00000004725)	SERPINB1 (ENSLBEG00000004774)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a
Perciformes	ANCESTRAL SPECIES	8	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Lumpfish	MODERN SPECIES	19	rgs8 (ENSCLMG00005016778)	ENSCLMG00005016775	brinp3a.1 (ENSCLMG00005016773)	brinp3a.2 (ENSCLMG00005016770)	RGS1 (ENSCLMG00005016757)	ENSCLMG00005016752	RGS13 (ENSCLMG00005016751)	ENSCLMG00005016748	uchl5 (ENSCLMG00005016739)	glrx2 (ENSCLMG00005016735)	b3galt2 (ENSCLMG00005016734)	ENSCLMG00005016729	ENSCLMG00005016696	aspm (ENSCLMG00005016693)	depdc1a (ENSCLMG00005016687) #21	rpe65b (ENSCLMG00005016684) #22	si:ch211-198n5.11 (ENSCLMG00005016678)	fnbp1l (ENSCLMG00005016346)	bcar3 (ENSCLMG00005016124)	ENSCLMG00005016123	hps3 (ENSCLMG00005016121)	ENSCLMG00005016120	ENSCLMG00005016119	ttc14 (ENSCLMG00005016117)	ENSCLMG00005016115	fxr1 (ENSCLMG00005015995)	dnajc19 (ENSCLMG00005015992)	sox2 (ENSCLMG00005015991)	ENSCLMG00005015990	ATP11B (ENSCLMG00005014101)	mccc1 (ENSCLMG00005011992)
Stickleback	MODERN SPECIES	8	rgs5a (ENSGACG00000005708)	rgs16 (ENSGACG00000005760)	rgs8 (ENSGACG00000005773)	brinp3a.1 (ENSGACG00000005786)	brinp3a.2 (ENSGACG00000005791)	RGS13 (ENSGACG00000005823)	ENSGACG00000005845	uchl5 (ENSGACG00000005854)	glrx2 (ENSGACG00000005873)	b3galt2 (ENSGACG00000005881)	ENSGACG00000005883	ENSGACG00000005908	ENSGACG00000005911	ENSGACG00000005919	depdc1a (ENSGACG00000005920) #21	rpe65b (ENSGACG00000005930) #22	si:ch211-198n5.11 (ENSGACG00000005939)	fnbp1l (ENSGACG00000005948)	bcar3 (ENSGACG00000005999)	ENSGACG00000006012	hps3 (ENSGACG00000006016)	ttc14 (ENSGACG00000006030)	ENSGACG00000006044	ENSGACG00000006048	fxr1 (ENSGACG00000006052)	dnajc19 (ENSGACG00000006076)	ENSGACG00000006099	sox2 (ENSGACG00000006100)	ATP11B (ENSGACG00000006104)	mccc1 (ENSGACG00000006125)	ENSGACG00000006138
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Pike perch	MODERN SPECIES	59	RGS1 (ENSSLUG00000010646)	ENSSLUG00000010681	RGS13 (ENSSLUG00000010684)	ENSSLUG00000010688	uchl5 (ENSSLUG00000010702)	glrx2 (ENSSLUG00000010744)	b3galt2 (ENSSLUG00000010751)	ENSSLUG00000010763	cfhl1 (ENSSLUG00000010770)	ENSSLUG00000010772	aspm (ENSSLUG00000010814)	ENSSLUG00000011357	tm4sf4 (ENSSLUG00000011363)	ENSSLUG00000011367	depdc1a (ENSSLUG00000011374) #21	rpe65b (ENSSLUG00000011422) #22	si:ch211-198n5.11 (ENSSLUG00000012316)	fnbp1l (ENSSLUG00000012423)	ENSSLUG00000012471	bcar3 (ENSSLUG00000012491)	hps3 (ENSSLUG00000013002)	ENSSLUG00000013012	ttc14 (ENSSLUG00000009678)	ENSSLUG00000009681	fxr1 (ENSSLUG00000009708)	dnajc19 (ENSSLUG00000010014)	ATP11B (ENSSLUG00000010144)	mccc1 (ENSSLUG00000013622)	ENSSLUG00000014011	kng1 (ENSSLUG00000014020)	PIK3CA (ENSSLUG00000014031)
Channel bull blenny	MODERN SPECIES	18	ATP11B (ENSCGOG00000002429)	ENSCGOG00000002335	ENSCGOG00000002332	dnajc19 (ENSCGOG00000002325)	fxr1 (ENSCGOG00000001380)	ttc14 (ENSCGOG00000001210)	ENSCGOG00000001201	ENSCGOG00000001200	ENSCGOG00000001199	ENSCGOG00000001197	hps3 (ENSCGOG00000001187)	bcar3 (ENSCGOG00000001164)	fnbp1l (ENSCGOG00000001074)	si:ch211-198n5.11 (ENSCGOG00000001067)	depdc1a (ENSCGOG00000001060) #21	rpe65c (ENSCGOG00000000924) #22	ENSCGOG00000000909	aspm (ENSCGOG00000000756)	ENSCGOG00000000722	ENSCGOG00000000699	b3galt2 (ENSCGOG00000000691)	glrx2 (ENSCGOG00000000687)	uchl5 (ENSCGOG00000000533)	ENSCGOG00000008438	RGS13 (ENSCGOG00000008437)	ENSCGOG00000008432	RGS1 (ENSCGOG00000008431)	brinp3a.2 (ENSCGOG00000008259)	brinp3a.1 (ENSCGOG00000008162)	ENSCGOG00000008134	rgs8 (ENSCGOG00000008125)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000154304.C	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b.d	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
Gilthead seabream	MODERN SPECIES	2	RGS1 (ENSSAUG00010012436)	RGS13 (ENSSAUG00010012433)	ENSSAUG00010012428	RGS13 (ENSSAUG00010012418)	ENSSAUG00010012415	uchl5 (ENSSAUG00010012408)	glrx2 (ENSSAUG00010012405)	b3galt2 (ENSSAUG00010012403)	ENSSAUG00010012400	ENSSAUG00010012399	ENSSAUG00010012390	ENSSAUG00010012381	aspm (ENSSAUG00010012325)	depdc1a (ENSSAUG00010012316) #21	si:ch211-198n5.11 (ENSSAUG00010012112)	rpe65b (ENSSAUG00010012087) #22	fnbp1l (ENSSAUG00010012084)	bcar3 (ENSSAUG00010011607)	hps3 (ENSSAUG00010011586)	ttc14 (ENSSAUG00010011576)	fxr1 (ENSSAUG00010007117)	Tim14 (ENSSAUG00010007093)	ENSSAUG00010007090	sox2 (ENSSAUG00010007089)	ATP11B (ENSSAUG00010006965)	mccc1 (ENSSAUG00010002097)	ENSSAUG00010001984	ENSSAUG00010001979	PIK3CA (ENSSAUG00010001967)	ENSSAUG00010001961	ENSSAUG00010001957
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000154304.C	ENSGT00950000183022.a.a.b.b	ENSGT00940000165058.a	ENSGT00940000156099	ENSGT00940000157316.e.b	ENSGT00940000157316.f	ENSGT00940000158520.e.b.d	ENSGT00940000157937.b	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202
European seabass	MODERN SPECIES	17	rgs8 (ENSDLAG00005030910)	ENSDLAG00005016203	brinp3a.1 (ENSDLAG00005016237)	brinp3a.2 (ENSDLAG00005016277)	RGS1 (ENSDLAG00005016393)	ENSDLAG00005016412	RGS13 (ENSDLAG00005028322)	ENSDLAG00005016445	uchl5 (ENSDLAG00005016459)	b3galt2 (ENSDLAG00005028575)	ENSDLAG00005016552	ENSDLAG00005030889	ENSDLAG00005028523	aspm (ENSDLAG00005016604)	depdc1a (ENSDLAG00005016845) #21	ENSDLAG00005016891 #22	si:ch211-198n5.11 (ENSDLAG00005027011)	mccc1 (ENSDLAG00005019674)	ATP11B (ENSDLAG00005017428)	sox2 (ENSDLAG00005034867)	dnajc19 (ENSDLAG00005029415)	fxr1 (ENSDLAG00005020320)	ttc14 (ENSDLAG00005021228)	ENSDLAG00005027302	ENSDLAG00005021297	ENSDLAG00005006459	ENSDLAG00005034823	ENSDLAG00005006545	ENSDLAG00005006557	ENSDLAG00005006577	ENSDLAG00005029063
Large yellow croaker	MODERN SPECIES	489	brinp3a.2 (ENSLCRG00005007649)	RGS1 (ENSLCRG00005007653)	ENSLCRG00005007657	uchl5 (ENSLCRG00005007659)	RGS13 (ENSLCRG00005007668)	ENSLCRG00005007671	glrx2 (ENSLCRG00005007672)	b3galt2 (ENSLCRG00005007674)	ENSLCRG00005007675	ENSLCRG00005007676	ENSLCRG00005007678	ENSLCRG00005007679	ENSLCRG00005007683	aspm (ENSLCRG00005007694)	depdc1a (ENSLCRG00005007777) #21	rpe65b (ENSLCRG00005007787) #22	si:ch211-198n5.11 (ENSLCRG00005008831)	fnbp1l (ENSLCRG00005008845)	bcar3 (ENSLCRG00005010041)	ENSLCRG00005010272	naprt (ENSLCRG00005010977)	C8orf82 (ENSLCRG00005010981)	si:ch211-191a24.4 (ENSLCRG00005010982)	ENSLCRG00005010985	ENSLCRG00005010988	ENSLCRG00005011027	igfbp3 (ENSLCRG00005011029)	igfbp1a (ENSLCRG00005011030)	adcy1a (ENSLCRG00005011033)	sirt5 (ENSLCRG00005011141)	PHACTR1 (ENSLCRG00005011145)
Cod	MODERN SPECIES	3	uchl5 (ENSGMOG00000013191)	glrx2 (ENSGMOG00000013203)	ENSGMOG00000036186	ENSGMOG00000028696	b3galt2 (ENSGMOG00000003987)	ENSGMOG00000033356	ENSGMOG00000023400	ENSGMOG00000034376	ENSGMOG00000022741	ENSGMOG00000024283	ENSGMOG00000023090	ENSGMOG00000032511	ENSGMOG00000034477	aspm (ENSGMOG00000036993)	depdc1a (ENSGMOG00000007008) #21	ENSGMOG00000007026 #22	si:ch211-198n5.11 (ENSGMOG00000007037)	ENSGMOG00000007046	ENSGMOG00000007057	ENSGMOG00000033620	ENSGMOG00000007077	ENSGMOG00000034635	ENSGMOG00000025062	ENSGMOG00000025976	ENSGMOG00000029026	ENSGMOG00000034626	ENSGMOG00000027721	ENSGMOG00000009412	ENSGMOG00000036789	CDH2 (ENSGMOG00000005391)	ENSGMOG00000035189
Osteoglossiformes	ANCESTRAL SPECIES	2	ENSGT01030000234635.a.a.a.a.d	ENSGT00950000183036.a.a.h	ENSGT00950000183036.a.b	ENSGT01050000244941.B.d.h	ENSGT00390000007688	ENSGT01100000263525.a.b.b.i	ENSGT00530000063936.b.h	ENSGT00940000156348.B	ENSGT00390000011196	ENSGT00940000159289.j	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #21	ENSGT00950000182913.B.f #22	ENSGT00940000164186.a	ENSGT00950000183047.c.b.m	ENSGT00940000154130.a.a.b.i	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00390000001724.l	ENSGT00940000155042.a.a	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194	ENSGT00730000110988.wb.b	ENSGT00950000182917.a.b.a.f
Asian bonytongue	MODERN SPECIES	24	ENSSFOG00015027737	ENSSFOG00015016838	ENSSFOG00015024937	ENSSFOG00015028302	ENSSFOG00015014720	ENSSFOG00015029684	negr1 (ENSSFOG00015014749)	zranb2 (ENSSFOG00015014775)	PTGER3 (ENSSFOG00015014795)	cthl (ENSSFOG00015014815)	ankrd13c (ENSSFOG00015014850)	srsf11 (ENSSFOG00015027370)	lrrc40 (ENSSFOG00015014904)	LRRC7 (ENSSFOG00015014990)	depdc1a (ENSSFOG00015015357) #21	rpe65b (ENSSFOG00015015412) #22	si:ch211-198n5.11 (ENSSFOG00015015467)	fnbp1l (ENSSFOG00015015513)	bcar3 (ENSSFOG00015015564)	paox1 (ENSSFOG00015015650)	slc5a9 (ENSSFOG00015015681)	gclm (ENSSFOG00015015714)	dnttip2 (ENSSFOG00015015734)	spata6 (ENSSFOG00015027065)	bend5 (ENSSFOG00015015785)	AGBL4 (ENSSFOG00015015795)	elavl4 (ENSSFOG00015015838)	dmrta2 (ENSSFOG00015015895)	faf1 (ENSSFOG00015015918)	cdkn2c (ENSSFOG00015025573)	RNF11 (ENSSFOG00015029801)
P. kingsleyae	MODERN SPECIES	715															depdc1a (ENSPKIG00000009884) #21	rpe65b (ENSPKIG00000009975) #22	si:ch211-198n5.11 (ENSPKIG00000010147)
Spotted gar	MODERN SPECIES	648	xpr1a (ENSLOCG00000009831)	osbpl9 (ENSLOCG00000009802)	tor3a (ENSLOCG00000009789)	abl2 (ENSLOCG00000009782)	soat1 (ENSLOCG00000009767)	ENSLOCG00000009719	ENSLOCG00000009682	slc5a9 (ENSLOCG00000009664)	gclm (ENSLOCG00000009650)	dnttip2 (ENSLOCG00000009635)	paox1 (ENSLOCG00000009627)	srsf11 (ENSLOCG00000009617)	lrrc40 (ENSLOCG00000009608)	LRRC7 (ENSLOCG00000009583)	depdc1a (ENSLOCG00000009559) #21	rpe65b (ENSLOCG00000009534) #22	si:ch211-198n5.11 (ENSLOCG00000009522)	fnbp1l (ENSLOCG00000009505)	bcar3 (ENSLOCG00000009489)	mfsd14a1 (ENSLOCG00000009483)	calr (ENSLOCG00000009468)	ENSLOCG00000009453	TTC39A (ENSLOCG00000009436)	RNF11 (ENSLOCG00000009419)	cdkn2c (ENSLOCG00000009408)	faf1 (ENSLOCG00000009388)	dmrta2 (ENSLOCG00000009379)	elavl4 (ENSLOCG00000009363)	ENSLOCG00000009353	ENSLOCG00000009342	bend5 (ENSLOCG00000009332)
Reedfish	MODERN SPECIES	1	ENSECRG00000013434	ENSECRG00000013442	ENSECRG00000013455	ENSECRG00000013466	ENSECRG00000013474	ENSECRG00000013479	ENSECRG00000013486	ENSECRG00000013494	cyp4t8 (ENSECRG00000013506)	ankrd13c (ENSECRG00000013549)	cthl (ENSECRG00000013651)	zranb2 (ENSECRG00000013692)	lrrc40 (ENSECRG00000013715)	LRRC7 (ENSECRG00000013764)	depdc1a (ENSECRG00000013804) #21	rpe65b (ENSECRG00000013860) #22	si:ch211-198n5.11 (ENSECRG00000013972)	fnbp1l (ENSECRG00000014011)	srsf11 (ENSECRG00000014053)	ENSECRG00000014093	ENSECRG00000014117	ENSECRG00000014205	ENSECRG00000014220	ENSECRG00000014237	ENSECRG00000014258	ENSECRG00000014271	ENSECRG00000014284	ENSECRG00000014301	ENSECRG00000014317	ENSECRG00000014336	ENSECRG00000014345
Elephant shark	MODERN SPECIES	1737						zranb2 (ENSCMIG00000001181)	PTGER3 (ENSCMIG00000001176)	cth (ENSCMIG00000001111)	ankrd13c (ENSCMIG00000001034)	srsf11 (ENSCMIG00000001022)	ENSCMIG00000001018	lrrc40 (ENSCMIG00000000986)	ENSCMIG00000000964	ENSCMIG00000000958	ENSCMIG00000000950 #21	rpe65b (ENSCMIG00000000886) #22	ENSCMIG00000000863	si:ch211-198n5.11 (ENSCMIG00000000852)	wls (ENSCMIG00000000828) #23	ENSCMIG00000000815	GNG12 (ENSCMIG00000000805)	gadd45aa (ENSCMIG00000000801)	serbp1 (ENSCMIG00000000793)	ENSCMIG00000000783
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182913.B #22
Hagfish	MODERN SPECIES	208												ENSEBUG00000014710	rad54l (ENSEBUG00000011930)	ENSEBUG00000012469	ENSEBUG00000013788	rpe65c (ENSEBUG00000006492) #22	pgm5 (ENSEBUG00000011664)	kif2a (ENSEBUG00000001960)	ENSEBUG00000006866	ENSEBUG00000009202	ENSEBUG00000009288	ENSEBUG00000002133	ENSEBUG00000015468	ENSEBUG00000004847	ENSEBUG00000005463	ENSEBUG00000016732	ENSEBUG00000012192	ENSEBUG00000000988	ENSEBUG00000010519	ENSEBUG00000013130	ENSEBUG00000011814