Vertebrata	ANCESTRAL SPECIES	125																ENSGT00940000158007 #22	ENSGT00390000001280 #23	ENSGT00940000155889 #24
Gnathostomata	ANCESTRAL SPECIES	944																ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24
Euteleostomi	ANCESTRAL SPECIES	338														ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000006548.b	ENSGT00940000164099.a.b	ENSGT00950000182940.a	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000158086 #14	ENSGT00940000157725 #15
Sarcopterygii	ANCESTRAL SPECIES	278												ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000006548.b	ENSGT00940000164099.a.b	ENSGT00950000182940.a	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000158086 #14	ENSGT00940000157725 #15
Tetrapoda	ANCESTRAL SPECIES	203												ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000006548.b	ENSGT00940000164099.a.b	ENSGT00940000155524	ENSGT00940000156817
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654	ENSGT00940000156817	ENSGT00940000155524	ENSGT00940000164099.a.b	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24
Mammalia	ANCESTRAL SPECIES	28	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000169460	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Theria	ANCESTRAL SPECIES	22	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000169460	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32
Eutheria	ANCESTRAL SPECIES	8	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00950000184921
Primates	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00950000184921
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #35
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #35
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00910000148680	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00910000148680	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36
Hominidae	ANCESTRAL SPECIES	22	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Pan	ANCESTRAL SPECIES	20	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00940000164336 #33	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Chimpanzee	MODERN SPECIES	6	RASL12 (ENSPTRG00000007173) #7	SLC51B (ENSPTRG00000007172) #8	MTFMT (ENSPTRG00000007171) #9	SPG21 (ENSPTRG00000007170) #10	ANKDD1A (ENSPTRG00000007169) #11	PLEKHO2 (ENSPTRG00000007168) #12	PIF1 (ENSPTRG00000007166) #13	RBPMS2 (ENSPTRG00000007165) #14	OAZ2 (ENSPTRG00000007164) #15	ENSPTRG00000044786 #16	ZNF609 (ENSPTRG00000007163) #17	TRIP4 (ENSPTRG00000007160) #18	PCLAF (ENSPTRG00000007159) #19	ENSPTRG00000043374 #20	CSNK1G1 (ENSPTRG00000007157) #21	PPIB (ENSPTRG00000007156) #22	SNX22 (ENSPTRG00000048032) #23	SNX1 (ENSPTRG00000007154) #24	CIAO2A (ENSPTRG00000007153) #25	DAPK2 (ENSPTRG00000007152) #26	HERC1 (ENSPTRG00000007151) #27	ENSPTRG00000051906 #28	USP3 (ENSPTRG00000007149) #29	CA12 (ENSPTRG00000051680) #30	APH1B (ENSPTRG00000007146) #31	RAB8B (ENSPTRG00000043064) #32	ENSPTRG00000007144 #33	LACTB (ENSPTRG00000007143) #34	TPM1 (ENSPTRG00000007141) #35	ENSPTRG00000043477 #36	TLN2 (ENSPTRG00000007140) #37
Bonobo	MODERN SPECIES	6	RASL12 (ENSPPAG00000031385) #7	SLC51B (ENSPPAG00000029986) #8	MTFMT (ENSPPAG00000035142) #9	SPG21 (ENSPPAG00000014442) #10	ANKDD1A (ENSPPAG00000035127) #11	PLEKHO2 (ENSPPAG00000021793) #12	PIF1 (ENSPPAG00000026794) #13	RBPMS2 (ENSPPAG00000024456) #14	OAZ2 (ENSPPAG00000034182) #15	ENSPPAG00000036324 #16	ZNF609 (ENSPPAG00000040240) #17	TRIP4 (ENSPPAG00000017953) #18	PCLAF (ENSPPAG00000022409) #19	ENSPPAG00000040513 #20	CSNK1G1 (ENSPPAG00000036515) #21	PPIB (ENSPPAG00000033464) #22	SNX22 (ENSPPAG00000033060) #23	SNX1 (ENSPPAG00000032668) #24	CIAO2A (ENSPPAG00000026013) #25	DAPK2 (ENSPPAG00000036415) ##26	HERC1 (ENSPPAG00000027734) #27	ENSPPAG00000043136 #28	USP3 (ENSPPAG00000040233) #29	CA12 (ENSPPAG00000043661) #30	APH1B (ENSPPAG00000013129) #31	RAB8B (ENSPPAG00000037656) #32	ENSPPAG00000027359 #33	LACTB (ENSPPAG00000032543) #34	TPM1 (ENSPPAG00000004536) #35	ENSPPAG00000032491 #36	TLN2 (ENSPPAG00000035497) #37
Human	MODERN SPECIES	6	KBTBD13 (ENSG00000234438)	RASL12 (ENSG00000103710) #7	SLC51B (ENSG00000186198) #8	MTFMT (ENSG00000103707) #9	SPG21 (ENSG00000090487) #10	ANKDD1A (ENSG00000166839) #11	ENSG00000249240	PLEKHO2 (ENSG00000241839) #12	PIF1 (ENSG00000140451) #13	RBPMS2 (ENSG00000166831) #14	OAZ2 (ENSG00000180304) #15	ZNF609 (ENSG00000180357) #17	TRIP4 (ENSG00000103671) #18	PCLAF (ENSG00000166803) #19	CSNK1G1 (ENSG00000169118) #21	PPIB (ENSG00000166794) #22	SNX22 (ENSG00000157734) #23	SNX1 (ENSG00000028528) #24	CIAO2A (ENSG00000166797) #25	DAPK2 (ENSG00000035664) ##26	HERC1 (ENSG00000103657) #27	FBXL22 (ENSG00000197361) #28	USP3 (ENSG00000140455) #29	CA12 (ENSG00000074410) #30	APH1B (ENSG00000138613) #31	RAB8B (ENSG00000166128) #32	RPS27L (ENSG00000185088)	LACTB (ENSG00000103642) #34	TPM1 (ENSG00000140416) #35	TLN2 (ENSG00000171914) #37	C2CD4B (ENSG00000205502)
Gorilla	MODERN SPECIES	6	RASL12 (ENSGGOG00000024110) #7	SLC51B (ENSGGOG00000015637) #8	MTFMT (ENSGGOG00000001124) #9	SPG21 (ENSGGOG00000004763) #10	ANKDD1A (ENSGGOG00000003179) #11	PLEKHO2 (ENSGGOG00000005801) #12	PIF1 (ENSGGOG00000012347) #13	RBPMS2 (ENSGGOG00000008984) #14	OAZ2 (ENSGGOG00000013379) #15	ENSGGOG00000026667	ZNF609 (ENSGGOG00000000867) #17	TRIP4 (ENSGGOG00000022608) #18	PCLAF (ENSGGOG00000003697) #19	CSNK1G1 (ENSGGOG00000004826) #21	ENSGGOG00000042669 #20	PPIB (ENSGGOG00000011086) #22	ENSGGOG00000038781 #23	SNX1 (ENSGGOG00000011072) #24	CIAO2A (ENSGGOG00000016550) #25	ENSGGOG00000016537 #26	HERC1 (ENSGGOG00000013126) #27	ENSGGOG00000024384 #28	ENSGGOG00000044118	USP3 (ENSGGOG00000015288) #29	CA12 (ENSGGOG00000002094) #30	APH1B (ENSGGOG00000043020) #31	RAB8B (ENSGGOG00000008799) #32	RPS27L (ENSGGOG00000025910)	LACTB (ENSGGOG00000014658) #34	TPM1 (ENSGGOG00000009130) #35	TLN2 (ENSGGOG00000015139) #37
Orangutan	MODERN SPECIES	6	UBAP1L (ENSPPYG00000030696)	KBTBD13 (ENSPPYG00000006561)	RASL12 (ENSPPYG00000006560) #7	SLC51B (ENSPPYG00000037628) #8	MTFMT (ENSPPYG00000006558) #9	SPG21 (ENSPPYG00000006557) #10	ANKDD1A (ENSPPYG00000006556) #11	PLEKHO2 (ENSPPYG00000006555) #12	PIF1 (ENSPPYG00000006554) #13	RBPMS2 (ENSPPYG00000030244) #14	OAZ2 (ENSPPYG00000006552) #15	ZNF609 (ENSPPYG00000006551) #17	TRIP4 (ENSPPYG00000006550) #18	PCLAF (ENSPPYG00000006549) #19	CSNK1G1 (ENSPPYG00000006548) #21	PPIB (ENSPPYG00000041014) #22	SNX22 (ENSPPYG00000040033) #23	SNX1 (ENSPPYG00000006545) #24	CIAO2A (ENSPPYG00000033735) #25	ENSPPYG00000006543 #26	HERC1 (ENSPPYG00000029751) #27	ENSPPYG00000036524 #28	USP3 (ENSPPYG00000006541) #29	CA12 (ENSPPYG00000006540) #30	APH1B (ENSPPYG00000006539) #31	RAB8B (ENSPPYG00000006538) #32	ENSPPYG00000006537 #33	LACTB (ENSPPYG00000006536) #34	TPM1 (ENSPPYG00000006534) #35	TLN2 (ENSPPYG00000006533) #37	ENSPPYG00000033556
Gibbon	MODERN SPECIES	21	RASL12 (ENSNLEG00000012613) #7	SLC51B (ENSNLEG00000012610) #8	MTFMT (ENSNLEG00000034733) #9	SPG21 (ENSNLEG00000012567) #10	ANKDD1A (ENSNLEG00000012524) #11	ENSNLEG00000031983	PLEKHO2 (ENSNLEG00000026992) #12	ENSNLEG00000012512 #13	ENSNLEG00000012505 #14	OAZ2 (ENSNLEG00000034581) #15	ENSNLEG00000012477 #17	TRIP4 (ENSNLEG00000012455) #18	PCLAF (ENSNLEG00000029458) #19	CSNK1G1 (ENSNLEG00000012422) #21	ENSNLEG00000027968 #20	PPIB (ENSNLEG00000012419) #22	SNX22 (ENSNLEG00000012416) #23	SNX1 (ENSNLEG00000012400) #24	CIAO2A (ENSNLEG00000033312) #25	ENSNLEG00000012381 #26	HERC1 (ENSNLEG00000012301) #27	ENSNLEG00000012299 #28	ENSNLEG00000029982	USP3 (ENSNLEG00000012274) #29	CA12 (ENSNLEG00000012252) #30	APH1B (ENSNLEG00000012240) #31	RAB8B (ENSNLEG00000012227) #32	RPS27L (ENSNLEG00000027571)	LACTB (ENSNLEG00000012215) #34	ENSNLEG00000012145 #35	ENSNLEG00000006575 #36
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00910000148680	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00910000148680	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Vervet Monkey	MODERN SPECIES	17	NPL (ENSCSAG00000012535)	DHX9 (ENSCSAG00000012549)	SHCBP1L (ENSCSAG00000012580)	LAMC1 (ENSCSAG00000012606)	LAMC2 (ENSCSAG00000012624)	NMNAT2 (ENSCSAG00000012635)	SMG7 (ENSCSAG00000012654)	NCF2 (ENSCSAG00000012663)	ARPC5 (ENSCSAG00000012676)	APOBEC4 (ENSCSAG00000000243)	ENSCSAG00000000244	RGL1 (ENSCSAG00000012682)	COLGALT2 (ENSCSAG00000012787)	TSEN15 (ENSCSAG00000012819)	C1orf21 (ENSCSAG00000012828)	ENSCSAG00000000245 #22	EDEM3 (ENSCSAG00000012843)	NIBAN1 (ENSCSAG00000012855)	RNF2 (ENSCSAG00000012868)	TRMT1L (ENSCSAG00000012880)	SWT1 (ENSCSAG00000012895)	IVNS1ABP (ENSCSAG00000012909)	ENSCSAG00000000246	HMCN1 (ENSCSAG00000013167)	PRG4 (ENSCSAG00000013272)	TPR (ENSCSAG00000013292)	ODR4 (ENSCSAG00000013300)	PDC (ENSCSAG00000013308)	PTGS2 (ENSCSAG00000013318)	PLA2G4A (ENSCSAG00000013326)	ENSCSAG00000013330
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00910000148680	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300.b #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Pig-tailed macaque	MODERN SPECIES	77	KBTBD13 (ENSMNEG00000014591)	RASL12 (ENSMNEG00000043863) #7	SLC51B (ENSMNEG00000037631) #8	MTFMT (ENSMNEG00000040880) #9	SPG21 (ENSMNEG00000040418) #10	ANKDD1A (ENSMNEG00000037506) #11	PLEKHO2 (ENSMNEG00000033712) #12	PIF1 (ENSMNEG00000035581) #13	RBPMS2 (ENSMNEG00000019330) #14	OAZ2 (ENSMNEG00000014297) #15	ZNF609 (ENSMNEG00000041662) #17	ENSMNEG00000043120	TRIP4 (ENSMNEG00000033592) #18	PCLAF (ENSMNEG00000030492) #19	CSNK1G1 (ENSMNEG00000044820) #21	PPIB (ENSMNEG00000041616) #22	SNX22 (ENSMNEG00000032129) #23	SNX1 (ENSMNEG00000040604) #24	ENSMNEG00000038611 #25	DAPK2 (ENSMNEG00000037814) #26	HERC1 (ENSMNEG00000042046) #27	FBXL22 (ENSMNEG00000003587) #28	USP3 (ENSMNEG00000040681) #29	CA12 (ENSMNEG00000035236) #30	APH1B (ENSMNEG00000034795) #31	RAB8B (ENSMNEG00000033725) #32	RPS27L (ENSMNEG00000033448)	LACTB (ENSMNEG00000032367) #34	TPM1 (ENSMNEG00000031245) #35	ENSMNEG00000034201 #36	TLN2 (ENSMNEG00000028802) #37
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT01100000263539.b.b.a.a.a.b.b.a	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300.b #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000163765.e.b
Crab-eating macaque	MODERN SPECIES	17	MTFMT (ENSMFAG00000000627) #9	SPG21 (ENSMFAG00000034518) #10	ANKDD1A (ENSMFAG00000041562) #11	ENSMFAG00000061600	PIF1 (ENSMFAG00000042218) #13	RBPMS2 (ENSMFAG00000045343) #14	OAZ2 (ENSMFAG00000000861) #15	ENSMFAG00000050560	ZNF609 (ENSMFAG00000002867) #17	TRIP4 (ENSMFAG00000036568) #18	PCLAF (ENSMFAG00000064955) #19	ENSMFAG00000063293 #18	ENSMFAG00000000382	ENSMFAG00000065223	CSNK1G1 (ENSMFAG00000002355) #21	PPIB (ENSMFAG00000000853) #22	SNX22 (ENSMFAG00000042949) #23	SNX1 (ENSMFAG00000040273) #24	CIAO2A (ENSMFAG00000035924) #25	DAPK2 (ENSMFAG00000028166) #26	ENSMFAG00000064675	HERC1 (ENSMFAG00000042846) #27	FBXL22 (ENSMFAG00000000573) #28	USP3 (ENSMFAG00000016075) #29	CA12 (ENSMFAG00000040970) #30	APH1B (ENSMFAG00000050606) #31	RAB8B (ENSMFAG00000054576) #32	ENSMFAG00000039460	LACTB (ENSMFAG00000001322) #34	ENSMFAG00000030943 #35	TLN2 (ENSMFAG00000003975) #37
Rhesus	MODERN SPECIES	17	RASL12 (ENSMMUG00000004029) #7	SLC51B (ENSMMUG00000049468) #8	MTFMT (ENSMMUG00000061537) #9	SPG21 (ENSMMUG00000010949) #10	ENSMMUG00000049680	ENSMMUG00000051023	ANKDD1A (ENSMMUG00000010948) #11	ENSMMUG00000051391	PIF1 (ENSMMUG00000006366) #13	RBPMS2 (ENSMMUG00000013270) #14	OAZ2 (ENSMMUG00000044385) #15	ZNF609 (ENSMMUG00000001247) #17	TRIP4 (ENSMMUG00000009882) #18	PCLAF (ENSMMUG00000029603) #19	CSNK1G1 (ENSMMUG00000021124) #21	PPIB (ENSMMUG00000045241) #22	SNX22 (ENSMMUG00000021122) #23	SNX1 (ENSMMUG00000014005) #24	CIAO2A (ENSMMUG00000014004) #25	DAPK2 (ENSMMUG00000018177) #26	HERC1 (ENSMMUG00000012117) #27	FBXL22 (ENSMMUG00000012116) #28	USP3 (ENSMMUG00000012114) #29	CA12 (ENSMMUG00000021338) #30	APH1B (ENSMMUG00000059755) #31	RAB8B (ENSMMUG00000013460) #32	RPS27L (ENSMMUG00000016350)	LACTB (ENSMMUG00000003544) #34	TPM1 (ENSMMUG00000001587) #35	ENSMMUG00000056092	TLN2 (ENSMMUG00000011503) #37
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00910000148680	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Olive baboon	MODERN SPECIES	17	KBTBD13 (ENSPANG00000007309)	RASL12 (ENSPANG00000016745) #7	SLC51B (ENSPANG00000016744) #8	MTFMT (ENSPANG00000016759) #9	SPG21 (ENSPANG00000016758) #10	ANKDD1A (ENSPANG00000016757) #11	ENSPANG00000034589	PLEKHO2 (ENSPANG00000016756) #12	PIF1 (ENSPANG00000016755) #13	RBPMS2 (ENSPANG00000016754) #14	OAZ2 (ENSPANG00000016753) #15	ZNF609 (ENSPANG00000016751) #17	TRIP4 (ENSPANG00000016750) #18	PCLAF (ENSPANG00000016813) #19	CSNK1G1 (ENSPANG00000016816) #21	PPIB (ENSPANG00000046216) #22	SNX22 (ENSPANG00000016815) #23	SNX1 (ENSPANG00000016878) #24	ENSPANG00000016877 #25	DAPK2 (ENSPANG00000016876) #26	HERC1 (ENSPANG00000016930) #27	FBXL22 (ENSPANG00000029475) #28	USP3 (ENSPANG00000016961) #29	CA12 (ENSPANG00000016960) #30	APH1B (ENSPANG00000016959) #31	RAB8B (ENSPANG00000016985) #32	RPS27L (ENSPANG00000034038)	LACTB (ENSPANG00000016984) #34	ENSPANG00000016983 #35	ENSPANG00000048538	ENSPANG00000001886
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000153341.b.p.a.b.b.b.b.g.a #36	ENSGT00940000154699 #37
Drill	MODERN SPECIES	253	SLC51B (ENSMLEG00000026018) #8	MTFMT (ENSMLEG00000012111) #9	SPG21 (ENSMLEG00000039160) #10	ANKDD1A (ENSMLEG00000027812) #11	PLEKHO2 (ENSMLEG00000020553) #12	PIF1 (ENSMLEG00000037741) #13	RBPMS2 (ENSMLEG00000035922) #14	OAZ2 (ENSMLEG00000035152) #15	ENSMLEG00000035161	ENSMLEG00000043031	ZNF609 (ENSMLEG00000041950) #17	TRIP4 (ENSMLEG00000027911) #18	PCLAF (ENSMLEG00000026006) #19	ENSMLEG00000041658 #20	CSNK1G1 (ENSMLEG00000030799) #21	PPIB (ENSMLEG00000028165) #22	SNX22 (ENSMLEG00000033044) #23	SNX1 (ENSMLEG00000033222) #24	ENSMLEG00000042755 #25	DAPK2 (ENSMLEG00000033599) #26	HERC1 (ENSMLEG00000032497) #27	FBXL22 (ENSMLEG00000010253) #28	USP3 (ENSMLEG00000038500) #29	CA12 (ENSMLEG00000038571) #30	RAB8B (ENSMLEG00000033843) #32	LACTB (ENSMLEG00000043855) #34	TPM1 (ENSMLEG00000043798) #35	ENSMLEG00000040651 #36	TLN2 (ENSMLEG00000037977) #37	ENSMLEG00000008407	ENSMLEG00000033514
Sooty mangabey	MODERN SPECIES	336	KBTBD13 (ENSCATG00000021610)	RASL12 (ENSCATG00000042289) #7	SLC51B (ENSCATG00000043736) #8	MTFMT (ENSCATG00000024224) #9	SPG21 (ENSCATG00000043599) #10	ANKDD1A (ENSCATG00000035001) #11	PLEKHO2 (ENSCATG00000034692) #12	PIF1 (ENSCATG00000030698) #13	RBPMS2 (ENSCATG00000042116) #14	OAZ2 (ENSCATG00000025657) #15	ZNF609 (ENSCATG00000041765) #17	ENSCATG00000037586	TRIP4 (ENSCATG00000041144) #18	PCLAF (ENSCATG00000025742) #19	CSNK1G1 (ENSCATG00000043325) #21	PPIB (ENSCATG00000040323) #22	SNX22 (ENSCATG00000002979) #23	SNX1 (ENSCATG00000033770) #24	CIAO2A (ENSCATG00000033389) #25	DAPK2 (ENSCATG00000043801) #26	HERC1 (ENSCATG00000031246) #27	FBXL22 (ENSCATG00000033595) #28	USP3 (ENSCATG00000026128) #29	CA12 (ENSCATG00000029646) #30	APH1B (ENSCATG00000031142) #31	RAB8B (ENSCATG00000034026) #32	RPS27L (ENSCATG00000019220)	LACTB (ENSCATG00000032182) #34	TPM1 (ENSCATG00000043567) #35	TLN2 (ENSCATG00000039955) #37	ENSCATG00000020724
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00390000008092.b	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT01010000222997 #20	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a.m.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30
Golden snub-nosed monkey	MODERN SPECIES	3011	RASL12 (ENSRROG00000040793) #7	SLC51B (ENSRROG00000010776) #8	MTFMT (ENSRROG00000023835) #9	SPG21 (ENSRROG00000001355) #10	ANKDD1A (ENSRROG00000040585) #11	PLEKHO2 (ENSRROG00000037689) #12	PIF1 (ENSRROG00000031261) #13	RBPMS2 (ENSRROG00000006473) #14	OAZ2 (ENSRROG00000037730) #15	ENSRROG00000031151	ZNF609 (ENSRROG00000027300) #17	TRIP4 (ENSRROG00000030525) #18	PCLAF (ENSRROG00000038580) #19	ENSRROG00000037413 #20	CSNK1G1 (ENSRROG00000038647) #21	PPIB (ENSRROG00000035509) #22	SNX22 (ENSRROG00000030756) #23	ENSRROG00000038172	SNX1 (ENSRROG00000044871) #24	CIAO2A (ENSRROG00000031571) #25	DAPK2 (ENSRROG00000029585) #26	HERC1 (ENSRROG00000045183) #27	FBXL22 (ENSRROG00000032880) #28	USP3 (ENSRROG00000043098) #29
Black snub-nosed monkey	MODERN SPECIES	772	UBAP1L (ENSRBIG00000038643)	RASL12 (ENSRBIG00000041270) #7	SLC51B (ENSRBIG00000025591) #8	MTFMT (ENSRBIG00000018525) #9	SPG21 (ENSRBIG00000028369) #10	ANKDD1A (ENSRBIG00000018797) #11	PLEKHO2 (ENSRBIG00000041923) #12	PIF1 (ENSRBIG00000032740) #13	ENSRBIG00000028253 #14	OAZ2 (ENSRBIG00000029389) #15	ZNF609 (ENSRBIG00000018885) #17	TRIP4 (ENSRBIG00000038027) #18	ENSRBIG00000032907	ENSRBIG00000027525 #20	CSNK1G1 (ENSRBIG00000043099) #21	PPIB (ENSRBIG00000024367) #22	SNX22 (ENSRBIG00000029016) #23	ENSRBIG00000043758	SNX1 (ENSRBIG00000035192) #24	CIAO2A (ENSRBIG00000030155) #25	DAPK2 (ENSRBIG00000029819) #26	ENSRBIG00000006079	ENSRBIG00000030093	ENSRBIG00000029554	CHCHD3 (ENSRBIG00000029228)	ENSRBIG00000040816	PLXNA4 (ENSRBIG00000036387)
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00950000184921	ENSGT01030000234542.b.a.a.b.a.a #35
Cebidae	ANCESTRAL SPECIES	29	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Marmoset	MODERN SPECIES	1	RASL12 (ENSCJAG00000080082) #7	SLC51B (ENSCJAG00000006852) #8	MTFMT (ENSCJAG00000006848) #9	ENSCJAG00000005282 #10	ANKDD1A (ENSCJAG00000031989) #11	ENSCJAG00000075564	PLEKHO2 (ENSCJAG00000040691) #12	PIF1 (ENSCJAG00000005214) #13	RBPMS2 (ENSCJAG00000005200) #14	OAZ2 (ENSCJAG00000005156) #15	ENSCJAG00000086243	ZNF609 (ENSCJAG00000005128) #17	TRIP4 (ENSCJAG00000005107) #18	PCLAF (ENSCJAG00000037051) #19	CSNK1G1 (ENSCJAG00000005023) #21	PPIB (ENSCJAG00000004981) #22	SNX22 (ENSCJAG00000005006) #23	SNX1 (ENSCJAG00000004856) #24	CIAO2A (ENSCJAG00000084496) #25	DAPK2 (ENSCJAG00000004806) #26	ENSCJAG00000070880	HERC1 (ENSCJAG00000004567) #27	ENSCJAG00000004563 #28	USP3 (ENSCJAG00000004506) #29	CA12 (ENSCJAG00000011284) #30	APH1B (ENSCJAG00000011305) #31	RAB8B (ENSCJAG00000042696) #32	ENSCJAG00000044434 #33	LACTB (ENSCJAG00000004470) #34	TPM1 (ENSCJAG00000004355) #35	TLN2 (ENSCJAG00000004289) #37
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000017392	ENSGT00390000008092.b	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00510000047616.b.j	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Bolivian squirrel monkey	MODERN SPECIES	179	SLC51B (ENSSBOG00000023480) #8	MTFMT (ENSSBOG00000024674) #9	SPG21 (ENSSBOG00000021959) #10	ANKDD1A (ENSSBOG00000006335) #11	ENSSBOG00000023129	PLEKHO2 (ENSSBOG00000029901) #12	PIF1 (ENSSBOG00000020526) #13	RBPMS2 (ENSSBOG00000020118) #14	ENSSBOG00000022217 #15	ZNF609 (ENSSBOG00000032672) #17	ENSSBOG00000034750	TRIP4 (ENSSBOG00000020516) #18	ENSSBOG00000007219	CSNK1G1 (ENSSBOG00000026971) #21	ENSSBOG00000031609	PPIB (ENSSBOG00000034439) #22	SNX22 (ENSSBOG00000025574) #23	SNX1 (ENSSBOG00000000463) #24	ENSSBOG00000034764	CIAO2A (ENSSBOG00000020628) #25	DAPK2 (ENSSBOG00000018728) #26	TTC8 (ENSSBOG00000021140)	EML5 (ENSSBOG00000026643)	ENSSBOG00000017936	PTPN21 (ENSSBOG00000023528)	SPATA7 (ENSSBOG00000033474)	ENSSBOG00000030432	ENSSBOG00000036347	KCNK10 (ENSSBOG00000021387)	ENSSBOG00000023389	GALC (ENSSBOG00000026713)
Capuchin	MODERN SPECIES	386				ENSCCAG00000034785	ENSCCAG00000037021	SPG21 (ENSCCAG00000020796) #10	ANKDD1A (ENSCCAG00000032885) #11	PLEKHO2 (ENSCCAG00000024801) #12	PIF1 (ENSCCAG00000033317) #13	RBPMS2 (ENSCCAG00000036496) #14	OAZ2 (ENSCCAG00000031358) #15	ZNF609 (ENSCCAG00000023662) #17	TRIP4 (ENSCCAG00000026483) #18	PCLAF (ENSCCAG00000035573) #19	CSNK1G1 (ENSCCAG00000028280) #21	PPIB (ENSCCAG00000037462) #22	SNX22 (ENSCCAG00000035856) #23	SNX1 (ENSCCAG00000036677) #24	CIAO2A (ENSCCAG00000018177) #25	DAPK2 (ENSCCAG00000026794) #26	HERC1 (ENSCCAG00000023581) #27	FBXL22 (ENSCCAG00000035888) #28	USP3 (ENSCCAG00000029496) #29	CA12 (ENSCCAG00000027249) #30
Mas night monkey	MODERN SPECIES	1045			SPG21 (ENSANAG00000024557) #10	ANKDD1A (ENSANAG00000024207) #11	PLEKHO2 (ENSANAG00000032112) #12	PIF1 (ENSANAG00000026396) #13	RBPMS2 (ENSANAG00000014652) #14	OAZ2 (ENSANAG00000032482) #15	ZNF609 (ENSANAG00000036036) #17	ENSANAG00000020189	TRIP4 (ENSANAG00000027612) #18	PCLAF (ENSANAG00000032895) #19	ENSANAG00000020004	CSNK1G1 (ENSANAG00000034685) #21	ENSANAG00000038250	PPIB (ENSANAG00000038282) #22	SNX22 (ENSANAG00000031598) #23	SNX1 (ENSANAG00000028586) #24	CIAO2A (ENSANAG00000030216) #25	DAPK2 (ENSANAG00000025796) ##26	HERC1 (ENSANAG00000034456) #27	FBXL22 (ENSANAG00000018462) #28	ENSANAG00000019672	USP3 (ENSANAG00000038125) #29	CA12 (ENSANAG00000031578) #30	APH1B (ENSANAG00000024233) #31	ENSANAG00000019426	RAB8B (ENSANAG00000014540) #32	ENSANAG00000020165	ENSANAG00000028244 #33	LACTB (ENSANAG00000033008) #34
Tarsier	MODERN SPECIES	4897													TRIP4 (ENSTSYG00000007185) #18	PCLAF (ENSTSYG00000009438) #19	CSNK1G1 (ENSTSYG00000013750) #21	PPIB (ENSTSYG00000028947) #22	ENSTSYG00000026988 #23	SNX1 (ENSTSYG00000030172) #24	FAM96A (ENSTSYG00000034548) #25	DAPK2 (ENSTSYG00000012419) #26
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Mouse lemur	MODERN SPECIES	22	RASL12 (ENSMICG00000000624) #7	SLC51B (ENSMICG00000046031) #8	MTFMT (ENSMICG00000002867) #9	SPG21 (ENSMICG00000002862) #10	ANKDD1A (ENSMICG00000002854) #11	PLEKHO2 (ENSMICG00000047618) #12	PIF1 (ENSMICG00000007373) #13	RBPMS2 (ENSMICG00000029953) #14	ENSMICG00000007349	OAZ2 (ENSMICG00000007344) #15	ZNF609 (ENSMICG00000031327) #17	TRIP4 (ENSMICG00000008679) #18	PCLAF (ENSMICG00000008673) #19	CSNK1G1 (ENSMICG00000003315) #21	ENSMICG00000031175	PPIB (ENSMICG00000038643) #22	SNX22 (ENSMICG00000000405) #23	SNX1 (ENSMICG00000011078) #24	ENSMICG00000036936 #25	DAPK2 (ENSMICG00000011065) #26	HERC1 (ENSMICG00000007158) #27	FBXL22 (ENSMICG00000007146) #28	ENSMICG00000034930	USP3 (ENSMICG00000007133) #29	CA12 (ENSMICG00000007123) #30	APH1B (ENSMICG00000007117) #31	RAB8B (ENSMICG00000043942) #32	ENSMICG00000007109 #33	LACTB (ENSMICG00000007103) #34	TPM1 (ENSMICG00000028096) #35	TLN2 (ENSMICG00000002620) #37
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Greater bamboo lemur	MODERN SPECIES	105	KBTBD13 (ENSPSMG00000000701)	RASL12 (ENSPSMG00000000720) #7	SLC51B (ENSPSMG00000000726) #8	MTFMT (ENSPSMG00000000744) #9	SPG21 (ENSPSMG00000000822) #10	ANKDD1A (ENSPSMG00000000929) #11	PLEKHO2 (ENSPSMG00000000943) #12	PIF1 (ENSPSMG00000000997) #13	ENSPSMG00000001007 #14	OAZ2 (ENSPSMG00000001030) #15	ENSPSMG00000001037	ZNF609 (ENSPSMG00000001049) #17	TRIP4 (ENSPSMG00000001102) #18	PCLAF (ENSPSMG00000001141) #19	CSNK1G1 (ENSPSMG00000001719) #21	PPIB (ENSPSMG00000002859) #22	SNX22 (ENSPSMG00000002870) #23	SNX1 (ENSPSMG00000003000) #24	CIAO2A (ENSPSMG00000003334) #25	DAPK2 (ENSPSMG00000003359) #26	HERC1 (ENSPSMG00000003501) #27	FBXL22 (ENSPSMG00000003647) #28	USP3 (ENSPSMG00000003840) #29	CA12 (ENSPSMG00000004183) #30	APH1B (ENSPSMG00000004224) #31	RAB8B (ENSPSMG00000004246) #32	ENSPSMG00000004263 #33	LACTB (ENSPSMG00000004273) #34	TPM1 (ENSPSMG00000005012) #35	ENSPSMG00000005970	TLN2 (ENSPSMG00000006148) #37
Coquerels sifaka	MODERN SPECIES	321	PDCD7 (ENSPCOG00000020644)	UBAP1L (ENSPCOG00000021980)	RASL12 (ENSPCOG00000005311) #7	SLC51B (ENSPCOG00000020658) #8	ENSPCOG00000019663	SPG21 (ENSPCOG00000025563) #10	ANKDD1A (ENSPCOG00000020935) #11	PLEKHO2 (ENSPCOG00000015719) #12	PIF1 (ENSPCOG00000018639) #13	RBPMS2 (ENSPCOG00000023778) #14	OAZ2 (ENSPCOG00000013439) #15	ZNF609 (ENSPCOG00000013781) #17	TRIP4 (ENSPCOG00000013484) #18	ENSPCOG00000013171	CSNK1G1 (ENSPCOG00000024852) #21	PPIB (ENSPCOG00000024977) #22
Bushbaby	MODERN SPECIES	126	PDCD7 (ENSOGAG00000028484)	UBAP1L (ENSOGAG00000026705)	KBTBD13 (ENSOGAG00000032677)	RASL12 (ENSOGAG00000010391) #7	SLC51B (ENSOGAG00000010390) #8	MTFMT (ENSOGAG00000010388) #9	SPG21 (ENSOGAG00000010385) #10	PLEKHO2 (ENSOGAG00000010379) #12	PIF1 (ENSOGAG00000010371) #13	RBPMS2 (ENSOGAG00000026017) #14	OAZ2 (ENSOGAG00000012443) #15	ZNF609 (ENSOGAG00000012432) #17	TRIP4 (ENSOGAG00000012427) #18	PCLAF (ENSOGAG00000003982) #19	CSNK1G1 (ENSOGAG00000016882) #21	PPIB (ENSOGAG00000001933) #22	SNX22 (ENSOGAG00000001931) #23	ENSOGAG00000001925 #24	ENSOGAG00000024544	CIAO2A (ENSOGAG00000001924) #25	DAPK2 (ENSOGAG00000027766) #26	HERC1 (ENSOGAG00000013134) #27	ENSOGAG00000025353 #28	ENSOGAG00000032162	USP3 (ENSOGAG00000013129) #29	ENSOGAG00000030840	CA12 (ENSOGAG00000002515) #30	APH1B (ENSOGAG00000034676) #31	RAB8B (ENSOGAG00000002514) #32	ENSOGAG00000002513 #33	LACTB (ENSOGAG00000026764) #34
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Tree shrew	MODERN SPECIES	3448															CSNK1G1 (ENSTBEG00000003013) #21	ENSTBEG00000002998 #22	SNX1 (ENSTBEG00000002877) #24	CIAO2A (ENSTBEG00000002837) #25
Glires	ANCESTRAL SPECIES	15	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000170308	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206.o
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206.o
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206.o
Golden Hamster	MODERN SPECIES	672	Clpx (ENSMAUG00000018798)	Pdcd7 (ENSMAUG00000010175)	Ubap1l (ENSMAUG00000019477)	Kbtbd13 (ENSMAUG00000007549)	Rasl12 (ENSMAUG00000021367) #7	Slc51b (ENSMAUG00000016209) #8	Mtfmt (ENSMAUG00000019476) #9	Spg21 (ENSMAUG00000011488) #10	Ankdd1a (ENSMAUG00000009278) #11	Plekho2 (ENSMAUG00000018647) #12	Pif1 (ENSMAUG00000014194) #13	Rbpms2 (ENSMAUG00000019407) #14	Oaz2 (ENSMAUG00000013089) #15	Zfp609 (ENSMAUG00000014361) #17	Csnk1g1 (ENSMAUG00000020738) #21	Ppib (ENSMAUG00000016277) #22	Snx22 (ENSMAUG00000009971) #23	Snx1 (ENSMAUG00000017060) #24	ENSMAUG00000021107 #25	ENSMAUG00000009344	Dapk2 (ENSMAUG00000018956) ##26	Herc1 (ENSMAUG00000020600) #27	Fbxl22 (ENSMAUG00000000756) #28	Usp3 (ENSMAUG00000014840) #29	Car12 (ENSMAUG00000010842) #30	ENSMAUG00000020850 #31	Rab8b (ENSMAUG00000014611) #32	Rps27l (ENSMAUG00000014151)	Lactb (ENSMAUG00000000691) #34	Tpm1 (ENSMAUG00000015731) #35	Tln2 (ENSMAUG00000011104) #37
Chinese hamster chok1gshd	MODERN SPECIES	284	Ubap1l (ENSCGRG00001023243)	Kbtbd13 (ENSCGRG00001012125)	Rasl12 (ENSCGRG00001015470) #7	Slc51b (ENSCGRG00001013856) #8	Mtfmt (ENSCGRG00001010938) #9	Spg21 (ENSCGRG00001022317) #10	Ankdd1a (ENSCGRG00001014311) #11	Plekho2 (ENSCGRG00001003734) #12	Pif1 (ENSCGRG00001022422) #13	Rbpms2 (ENSCGRG00001014627) #14	Oaz2 (ENSCGRG00001010487) #15	Zfp609 (ENSCGRG00001021193) #17	Trip4 (ENSCGRG00001021158) #18	Pclaf (ENSCGRG00001015611) #19	ENSCGRG00001006652 #21	Ppib (ENSCGRG00001018105) #22	Snx22 (ENSCGRG00001015603) #23	Snx1 (ENSCGRG00001019877) #24	ENSCGRG00001015874 #25	Dapk2 (ENSCGRG00001014149) ##26	Herc1 (ENSCGRG00001025001) #27	Fbxl22 (ENSCGRG00001012979) #28	Usp3 (ENSCGRG00001012692) #29	Car12 (ENSCGRG00001005768) #30	ENSCGRG00001019290 #31	ENSCGRG00001018389 #31	Rab8b (ENSCGRG00001023679) #32	Rps27l (ENSCGRG00001020737)	Lactb (ENSCGRG00001017416) #34	Tpm1 (ENSCGRG00001021042) #35	Tln2 (ENSCGRG00001010300) #37
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206.o
Northern American deer mouse	MODERN SPECIES	20	Kbtbd13 (ENSPEMG00000005949)	Rasl12 (ENSPEMG00000026265) #7	Slc51b (ENSPEMG00000030201) #8	Mtfmt (ENSPEMG00000021536) #9	Spg21 (ENSPEMG00000021006) #10	Ankdd1a (ENSPEMG00000020958) #11	Plekho2 (ENSPEMG00000020353) #12	Pif1 (ENSPEMG00000022817) #13	Rbpms2 (ENSPEMG00000030862) #14	Oaz2 (ENSPEMG00000022920) #15	Zfp609 (ENSPEMG00000020682) #17	Trip4 (ENSPEMG00000012446) #18	ENSPEMG00000008026 #19	ENSPEMG00000027501	Csnk1g1 (ENSPEMG00000021693) #21	Ppib (ENSPEMG00000020752) #22	Snx22 (ENSPEMG00000020391) #23	Snx1 (ENSPEMG00000021765) #24	Ciao2a (ENSPEMG00000026146) #25	Dapk2 (ENSPEMG00000020347) ##26	Herc1 (ENSPEMG00000022291) #27	Fbxl22 (ENSPEMG00000026865) #28	Usp3 (ENSPEMG00000022492) #29	Car12 (ENSPEMG00000020817) #30	ENSPEMG00000017166 #31	ENSPEMG00000020385 #31	Rab8b (ENSPEMG00000022284) #32	ENSPEMG00000022063	Lactb (ENSPEMG00000021795) #34	Gm6525 (ENSPEMG00000024538)	Tpm1 (ENSPEMG00000020869) #35
Prairie vole	MODERN SPECIES	13	Rasl12 (ENSMOCG00000022051) #7	Slc51b (ENSMOCG00000016544) #8	Mtfmt (ENSMOCG00000022110) #9	Spg21 (ENSMOCG00000018012) #10	ENSMOCG00000008827	Ankdd1a (ENSMOCG00000010903) #11	Plekho2 (ENSMOCG00000004192) #12	Pif1 (ENSMOCG00000002650) #13	Rbpms2 (ENSMOCG00000021603) #14	Oaz2 (ENSMOCG00000022084) #15	Zfp609 (ENSMOCG00000018401) #17	Trip4 (ENSMOCG00000012669) #18	ENSMOCG00000007532 #19	ENSMOCG00000002331	Csnk1g1 (ENSMOCG00000002807) #21	Ppib (ENSMOCG00000010333) #22	Snx22 (ENSMOCG00000021921) #23	Snx1 (ENSMOCG00000001495) #24	Ciao2a (ENSMOCG00000018290) #25	Dapk2 (ENSMOCG00000014779) ##26	Herc1 (ENSMOCG00000019096) #27	Fbxl22 (ENSMOCG00000015109) #28	Usp3 (ENSMOCG00000016014) #29	Car12 (ENSMOCG00000011104) #30	ENSMOCG00000006287 #31	ENSMOCG00000012775 #32	ENSMOCG00000002090	Rps27l (ENSMOCG00000000754)	Lactb (ENSMOCG00000022545) #34	Tpm1 (ENSMOCG00000021399) #35	ENSMOCG00000001381 #37
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Mus	ANCESTRAL SPECIES	4	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.u.a #31	ENSGT00390000002049.c.b.u.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.u.a #31	ENSGT00390000002049.c.b.u.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828.s #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252.m #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.u.a #31	ENSGT00390000002049.c.b.u.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Mouse	MODERN SPECIES	18	Ubap1l (ENSMUSG00000086228)	Kbtbd13 (ENSMUSG00000054978)	Rasl12 (ENSMUSG00000041696) #7	Slc51b (ENSMUSG00000053862) #8	Mtfmt (ENSMUSG00000059183) #9	Spg21 (ENSMUSG00000032388) #10	Ankdd1a (ENSMUSG00000066510) #11	Plekho2 (ENSMUSG00000050721) #12	Pif1 (ENSMUSG00000041064) #13	Rbpms2 (ENSMUSG00000032387) #14	Oaz2 (ENSMUSG00000040652) #15	Zfp609 (ENSMUSG00000040524) #17	Trip4 (ENSMUSG00000032386) #18	Pclaf (ENSMUSG00000040204) #19	Csnk1g1 (ENSMUSG00000032384) #21	Ppib (ENSMUSG00000032383) #22	Snx22 (ENSMUSG00000039452) #23	Snx1 (ENSMUSG00000032382) #24	Ciao2a (ENSMUSG00000032381) #25	Dapk2 (ENSMUSG00000032380) #26	Herc1 (ENSMUSG00000038664) #27	Fbxl22 (ENSMUSG00000050503) #28	Usp3 (ENSMUSG00000032376) #29	Car12 (ENSMUSG00000032373) #30	Aph1b (ENSMUSG00000032375) #31	Aph1c (ENSMUSG00000053040) #31	Rab8b (ENSMUSG00000036943) #32	Rps27l (ENSMUSG00000036781)	Lactb (ENSMUSG00000032370) #34	Tpm1 (ENSMUSG00000032366) #35	Tln2 (ENSMUSG00000052698) #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828.s #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252.m #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.u.a #31	ENSGT00390000002049.c.b.u.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
spretus	MODERN SPECIES	18	Ubap1l (MGP_SPRETEiJ_G0033497)	Kbtbd13 (MGP_SPRETEiJ_G0033498)	Rasl12 (MGP_SPRETEiJ_G0033499) #7	Slc51b (MGP_SPRETEiJ_G0033500) #8	Mtfmt (MGP_SPRETEiJ_G0033501) #9	Spg21 (MGP_SPRETEiJ_G0033502) #10	Ankdd1a (MGP_SPRETEiJ_G0033503) #11	Plekho2 (MGP_SPRETEiJ_G0033504) #12	Pif1 (MGP_SPRETEiJ_G0033505) #13	Rbpms2 (MGP_SPRETEiJ_G0033506) #14	MGP_SPRETEiJ_G0033507 #15	Zfp609 (MGP_SPRETEiJ_G0033508) #17	Trip4 (MGP_SPRETEiJ_G0033509) #18	Pclaf (MGP_SPRETEiJ_G0033510) #19	Csnk1g1 (MGP_SPRETEiJ_G0033511) #21	Ppib (MGP_SPRETEiJ_G0033512) #22	Snx22 (MGP_SPRETEiJ_G0033513) #23	Snx1 (MGP_SPRETEiJ_G0033514) #24	Ciao2a (MGP_SPRETEiJ_G0033515) #25	MGP_SPRETEiJ_G0033516 ##26	Herc1 (MGP_SPRETEiJ_G0033517) #27	Fbxl22 (MGP_SPRETEiJ_G0033518) #28	Usp3 (MGP_SPRETEiJ_G0033519) #29	Car12 (MGP_SPRETEiJ_G0033520) #30	Aph1b (MGP_SPRETEiJ_G0033521) #31	Aph1c (MGP_SPRETEiJ_G0033522) #31	Rab8b (MGP_SPRETEiJ_G0033523) #32	Rps27l (MGP_SPRETEiJ_G0033524)	Lactb (MGP_SPRETEiJ_G0033525) #34	Tpm1 (MGP_SPRETEiJ_G0033526) #35	Tln2 (MGP_SPRETEiJ_G0033527) #37
Steppe mouse	MODERN SPECIES	3365	ENSMSIG00000005605	Kbtbd13 (ENSMSIG00000005647)	Rasl12 (ENSMSIG00000005656) #7	Slc51b (ENSMSIG00000005686) #8	Mtfmt (ENSMSIG00000005704) #9	Spg21 (ENSMSIG00000005730) #10	Ankdd1a (ENSMSIG00000005779) #11	Plekho2 (ENSMSIG00000005874) #12	Pif1 (ENSMSIG00000005899) #13	ENSMSIG00000005998 #14	Oaz2 (ENSMSIG00000006069) #15	Zfp609 (ENSMSIG00000006120) #17	Trip4 (ENSMSIG00000006163) #18	ENSMSIG00000006456 #19	Csnk1g1 (ENSMSIG00000006521) #21	Ppib (ENSMSIG00000007090) #22	Snx22 (ENSMSIG00000007110) #23	Snx1 (ENSMSIG00000007126) #24	Ciao2a (ENSMSIG00000007225) #25
Ryukyu mouse	MODERN SPECIES	18	Ubap1l (MGP_CAROLIEiJ_G0032358)	Kbtbd13 (MGP_CAROLIEiJ_G0032359)	Rasl12 (MGP_CAROLIEiJ_G0032360) #7	Slc51b (MGP_CAROLIEiJ_G0032361) #8	Mtfmt (MGP_CAROLIEiJ_G0032362) #9	Spg21 (MGP_CAROLIEiJ_G0032363) #10	Ankdd1a (MGP_CAROLIEiJ_G0032364) #11	Plekho2 (MGP_CAROLIEiJ_G0032365) #12	Pif1 (MGP_CAROLIEiJ_G0032366) #13	Rbpms2 (MGP_CAROLIEiJ_G0032367) #14	MGP_CAROLIEiJ_G0032368 #15	Zfp609 (MGP_CAROLIEiJ_G0032369) #17	Trip4 (MGP_CAROLIEiJ_G0032370) #18	Pclaf (MGP_CAROLIEiJ_G0032371) #19	Csnk1g1 (MGP_CAROLIEiJ_G0032372) #21	Ppib (MGP_CAROLIEiJ_G0032373) #22	Snx22 (MGP_CAROLIEiJ_G0032374) #23	Snx1 (MGP_CAROLIEiJ_G0032375) #24	Ciao2a (MGP_CAROLIEiJ_G0032376) #25	MGP_CAROLIEiJ_G0032377 ##26	Herc1 (MGP_CAROLIEiJ_G0032378) #27	Fbxl22 (MGP_CAROLIEiJ_G0032379) #28	Usp3 (MGP_CAROLIEiJ_G0032380) #29	Car12 (MGP_CAROLIEiJ_G0032381) #30	Aph1b (MGP_CAROLIEiJ_G0032382) #31	MGP_CAROLIEiJ_G0032383	MGP_CAROLIEiJ_G0032384 #31	Rab8b (MGP_CAROLIEiJ_G0032385) #32	Lactb (MGP_CAROLIEiJ_G0032387) #34	Tpm1 (MGP_CAROLIEiJ_G0032388) #35	Tln2 (MGP_CAROLIEiJ_G0032389) #37
Shrew mouse	MODERN SPECIES	1	Pdcd7 (MGP_PahariEiJ_G0015222)	Ubap1l (MGP_PahariEiJ_G0015223)	Kbtbd13 (MGP_PahariEiJ_G0015224)	Rasl12 (MGP_PahariEiJ_G0015225) #7	Slc51b (MGP_PahariEiJ_G0015226) #8	Mtfmt (MGP_PahariEiJ_G0015227) #9	Spg21 (MGP_PahariEiJ_G0015228) #10	Ankdd1a (MGP_PahariEiJ_G0015229) #11	Plekho2 (MGP_PahariEiJ_G0015230) #12	Pif1 (MGP_PahariEiJ_G0015231) #13	Rbpms2 (MGP_PahariEiJ_G0015232) #14	MGP_PahariEiJ_G0015233 #15	Zfp609 (MGP_PahariEiJ_G0015234) #17	Trip4 (MGP_PahariEiJ_G0015235) #18	Csnk1g1 (MGP_PahariEiJ_G0015237) #21	Ppib (MGP_PahariEiJ_G0015238) #22	Snx22 (MGP_PahariEiJ_G0015239) #23	Snx1 (MGP_PahariEiJ_G0015240) #24	Ciao2a (MGP_PahariEiJ_G0015241) #25	MGP_PahariEiJ_G0015242 ##26	Herc1 (MGP_PahariEiJ_G0015243) #27	Fbxl22 (MGP_PahariEiJ_G0015244) #28	Usp3 (MGP_PahariEiJ_G0015245) #29	Car12 (MGP_PahariEiJ_G0015246) #30	Aph1b (MGP_PahariEiJ_G0015247) #31	MGP_PahariEiJ_G0015248 #31	Rab8b (MGP_PahariEiJ_G0015249) #32	MGP_PahariEiJ_G0015250	Lactb (MGP_PahariEiJ_G0015251) #34	MGP_PahariEiJ_G0015252 #35	Tln2 (MGP_PahariEiJ_G0015253) #37
Rat	MODERN SPECIES	18	Ubap1l (ENSRNOG00000050979)	AABR07070456.1 (ENSRNOG00000014383)	Rasl12 (ENSRNOG00000032339) #7	Slc51b (ENSRNOG00000028889) #8	Mtfmt (ENSRNOG00000014602) #9	Spg21 (ENSRNOG00000015019) #10	Ankdd1a (ENSRNOG00000015554) #11	Plekho2 (ENSRNOG00000029242) #12	Pif1 (ENSRNOG00000015878) #13	Rbpms2 (ENSRNOG00000015896) #14	Oaz2 (ENSRNOG00000015953) #15	Zfp609 (ENSRNOG00000015977) #17	Trip4 (ENSRNOG00000016121) #18	Pclaf (ENSRNOG00000067723)	Csnk1g1 (ENSRNOG00000016620) #21	Ppib (ENSRNOG00000016781) #22	Snx22 (ENSRNOG00000022852) #23	Snx1 (ENSRNOG00000017029) #24	Ciao2a (ENSRNOG00000017119) #25	Dapk2 (ENSRNOG00000017332) #26	Herc1 (ENSRNOG00000051671) #27	Fbxl22 (ENSRNOG00000017684) #28	Usp3 (ENSRNOG00000017714) #29	Car12 (ENSRNOG00000017766) #30	LOC691658 (ENSRNOG00000063302) #31	LOC120094192 (ENSRNOG00000067077) #31	Aph1b (ENSRNOG00000027295) #31	Rab8b (ENSRNOG00000018009) #32	Rps27l (ENSRNOG00000050473)	Lactb (ENSRNOG00000018081) #34	Tpm1 (ENSRNOG00000018184) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	ENSNGAG00000011880	Rasl12 (ENSNGAG00000019976) #7	Slc51b (ENSNGAG00000016122) #8	Mtfmt (ENSNGAG00000023307) #9	ENSNGAG00000021527 #10	Ankdd1a (ENSNGAG00000009321) #11	ENSNGAG00000003639	Plekho2 (ENSNGAG00000021787) #12	Pif1 (ENSNGAG00000021720) #13	Rbpms2 (ENSNGAG00000023569) #14	ENSNGAG00000015132 #15	Zfp609 (ENSNGAG00000013924) #17	Trip4 (ENSNGAG00000019566) #18	Pclaf (ENSNGAG00000014228) #19	Csnk1g1 (ENSNGAG00000020698) #21	Ppib (ENSNGAG00000010794) #22	Snx22 (ENSNGAG00000009778) #23	Snx1 (ENSNGAG00000008529) #24	Ciao2a (ENSNGAG00000011845) #25	ENSNGAG00000011632	Hecw1 (ENSNGAG00000002566)	Mrpl32 (ENSNGAG00000014806)	Psma2 (ENSNGAG00000014399)	ENSNGAG00000005007	ENSNGAG00000017257	Inhba (ENSNGAG00000016837)	Sugct (ENSNGAG00000004026)	ENSNGAG00000024052	Cdk13 (ENSNGAG00000021278)	Rala (ENSNGAG00000020171)
Lesser Egyptian jerboa	MODERN SPECIES	92	ENSJJAG00000011177	Rasl12 (ENSJJAG00000019387) #7	Slc51b (ENSJJAG00000017452) #8	Mtfmt (ENSJJAG00000021378) #9	ENSJJAG00000013627 #10	Ankdd1a (ENSJJAG00000014309) #11	Plekho2 (ENSJJAG00000014316) #12	Pif1 (ENSJJAG00000017111) #13	Rbpms2 (ENSJJAG00000001664) #14	Oaz2 (ENSJJAG00000024365) #15	Zfp609 (ENSJJAG00000019246) #17	Trip4 (ENSJJAG00000001629) #18	Pclaf (ENSJJAG00000008107) #19	ENSJJAG00000017750	Csnk1g1 (ENSJJAG00000012391) #21	Ppib (ENSJJAG00000022318) #22	Snx22 (ENSJJAG00000013816) #23	Snx1 (ENSJJAG00000004729) #24	ENSJJAG00000014166 #25	Dapk2 (ENSJJAG00000017017) ##26	Herc1 (ENSJJAG00000011445) #27	Fbxl22 (ENSJJAG00000005076) #28	Usp3 (ENSJJAG00000023661) #29	Car12 (ENSJJAG00000013683) #30	ENSJJAG00000018987 #31	Rab8b (ENSJJAG00000016477) #32	ENSJJAG00000021616	Lactb (ENSJJAG00000009980) #34	Tpm1 (ENSJJAG00000022370) #35	Tln2 (ENSJJAG00000016766) #37	Vps13c (ENSJJAG00000012718)
Kangaroo rat	MODERN SPECIES	330	Ubap1l (ENSDORG00000024217)	Kbtbd13 (ENSDORG00000024320)	Rasl12 (ENSDORG00000000119) #7	Slc51b (ENSDORG00000023591) #8	Mtfmt (ENSDORG00000004684) #9	Spg21 (ENSDORG00000003605) #10	Ankdd1a (ENSDORG00000008259) #11	Plekho2 (ENSDORG00000010180) #12	Pif1 (ENSDORG00000010176) #13	ENSDORG00000004025 #14	Oaz2 (ENSDORG00000013528) #15	Zfp609 (ENSDORG00000013522) #17	Trip4 (ENSDORG00000014914) #18	Pclaf (ENSDORG00000014912) #19	Csnk1g1 (ENSDORG00000011978) #21	Ppib (ENSDORG00000003536) #22	Snx22 (ENSDORG00000003534) #23	Snx1 (ENSDORG00000003256) #24	Ciao2a (ENSDORG00000026286) #25	ENSDORG00000012436 ##26	Herc1 (ENSDORG00000016189) #27	Fbxl22 (ENSDORG00000027356) #28	Usp3 (ENSDORG00000016188) #29	Car12 (ENSDORG00000012363) #30	ENSDORG00000012361 #31	Rab8b (ENSDORG00000023189) #32	ENSDORG00000007575	Lactb (ENSDORG00000028713) #34	Tpm1 (ENSDORG00000002438) #35	Tln2 (ENSDORG00000001561) #37	Vps13c (ENSDORG00000005969)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00960000190216	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Eurasian red squirrel	MODERN SPECIES	11	KBTBD13 (ENSSVLG00005022826)	RASL12 (ENSSVLG00005022769) #7	SLC51B (ENSSVLG00005022725) #8	MTFMT (ENSSVLG00005022671) #9	SPG21 (ENSSVLG00005022592) #10	ANKDD1A (ENSSVLG00005022263) #11	PLEKHO2 (ENSSVLG00005022144) #12	PIF1 (ENSSVLG00005022000) #13	RBPMS2 (ENSSVLG00005021946) #14	OAZ2 (ENSSVLG00005021896) #15	ENSSVLG00005021862	ZNF609 (ENSSVLG00005021804) #17	TRIP4 (ENSSVLG00005021760) #18	PCLAF (ENSSVLG00005021677) #19	ENSSVLG00005020987 #21	PPIB (ENSSVLG00005020844) #22	SNX22 (ENSSVLG00005020773) #23	SNX1 (ENSSVLG00005020669) #24	CIAO2A (ENSSVLG00005020595) #25	DAPK2 (ENSSVLG00005020537) #26	HERC1 (ENSSVLG00005019826) #27	FBXL22 (ENSSVLG00005019656) #28	USP3 (ENSSVLG00005019582) #29	CA12 (ENSSVLG00005019375) #30	APH1B (ENSSVLG00005019139) #31	RAB8B (ENSSVLG00005019069) #32	ENSSVLG00005018915	LACTB (ENSSVLG00005018852) #34	TPM1 (ENSSVLG00005018158) #35	TLN2 (ENSSVLG00005017833) #37	ENSSVLG00005017744
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857.w #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086.j #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252.o #19	ENSGT00960000190216	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Alpin marmot	MODERN SPECIES	7	RASL12 (ENSMMMG00000007263) #7	ENSMMMG00000007278 #8	ENSMMMG00000007284 #9	SPG21 (ENSMMMG00000007291) #10	ANKDD1A (ENSMMMG00000007304) #11	PLEKHO2 (ENSMMMG00000007337) #12	PIF1 (ENSMMMG00000007343) #13	ENSMMMG00000007389 #14	OAZ2 (ENSMMMG00000007403) #15	ENSMMMG00000007419	ZNF609 (ENSMMMG00000007450) #17	TRIP4 (ENSMMMG00000007457) #18	ENSMMMG00000007518 #19	ENSMMMG00000007521	CSNK1G1 (ENSMMMG00000007575) #21	PPIB (ENSMMMG00000008986) #22	SNX22 (ENSMMMG00000008995) #23	SNX1 (ENSMMMG00000009009) #24	CIAO2A (ENSMMMG00000009021) #25	DAPK2 (ENSMMMG00000009028) ##26	HERC1 (ENSMMMG00000009068) #27	ENSMMMG00000009185 #28	ENSMMMG00000009191	USP3 (ENSMMMG00000009199) #29	CA12 (ENSMMMG00000009446) #30	APH1B (ENSMMMG00000009477) #31	RAB8B (ENSMMMG00000009506) #32	RPS27L (ENSMMMG00000009532)	TPM1 (ENSMMMG00000009577) #35	TLN2 (ENSMMMG00000010746) #37	ENSMMMG00000011016
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857.w #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086.j #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252.o #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000163765.h
Squirrel	MODERN SPECIES	71	UBAP1L (ENSSTOG00000019679)	KBTBD13 (ENSSTOG00000010131)	RASL12 (ENSSTOG00000024973) #7	SLC51B (ENSSTOG00000010125) #8	MTFMT (ENSSTOG00000020944) #9	ENSSTOG00000010101 #10	ANKDD1A (ENSSTOG00000010088) #11	PLEKHO2 (ENSSTOG00000020393) #12	PIF1 (ENSSTOG00000020621) #13	RBPMS2 (ENSSTOG00000010055) #14	OAZ2 (ENSSTOG00000026782) #15	ZNF609 (ENSSTOG00000028919) #17	TRIP4 (ENSSTOG00000014228) #18	ENSSTOG00000019643 #19	CSNK1G1 (ENSSTOG00000007485) #21	PPIB (ENSSTOG00000005354) #22	SNX22 (ENSSTOG00000026558) #23	SNX1 (ENSSTOG00000005324) #24	CIAO2A (ENSSTOG00000024438) #25	DAPK2 (ENSSTOG00000016080) ##26	HERC1 (ENSSTOG00000016063) #27	FBXL22 (ENSSTOG00000016061) #28	USP3 (ENSSTOG00000016055) #29	CA12 (ENSSTOG00000016051) #30	APH1B (ENSSTOG00000016049) #31	RAB8B (ENSSTOG00000016046) #32	RPS27L (ENSSTOG00000014532)	LACTB (ENSSTOG00000009971) #34	TPM1 (ENSSTOG00000009955) #35	TLN2 (ENSSTOG00000014824) #37	ENSSTOG00000003290
Arctic ground squirrel	MODERN SPECIES	33	RASL12 (ENSUPAG00010000634) #7	SLC51B (ENSUPAG00010000624) #8	MTFMT (ENSUPAG00010000615) #9	SPG21 (ENSUPAG00010000593) #10	ANKDD1A (ENSUPAG00010000557) #11	ENSUPAG00010000549	PLEKHO2 (ENSUPAG00010000532) #12	PIF1 (ENSUPAG00010000479) #13	ENSUPAG00010000455 #14	OAZ2 (ENSUPAG00010000430) #15	ZNF609 (ENSUPAG00010000413) #17	TRIP4 (ENSUPAG00010000337) #18	ENSUPAG00010000325	PCLAF (ENSUPAG00010000314) #19	CSNK1G1 (ENSUPAG00010000036) #21	PPIB (ENSUPAG00010020340) #22	SNX22 (ENSUPAG00010020334) #23	SNX1 (ENSUPAG00010020313) #24	CIAO2A (ENSUPAG00010020303) #25	DAPK2 (ENSUPAG00010020287) ##26	HERC1 (ENSUPAG00010020206) #27	FBXL22 (ENSUPAG00010020202) #28	USP3 (ENSUPAG00010020157) #29	CA12 (ENSUPAG00010020142) #30	APH1B (ENSUPAG00010020133) #31	RAB8B (ENSUPAG00010020124) #32	RPS27L (ENSUPAG00010020117)	LACTB (ENSUPAG00010020113) #34	TPM1 (ENSUPAG00010020041) #35	TLN2 (ENSUPAG00010019892) #37	ENSUPAG00010019882
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000157312.g	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000157312.g	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000163765
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000157312.g	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00950000183083.a.d.a
Degu	MODERN SPECIES	67	SLC51B (ENSODEG00000016552) #8	ENSODEG00000017695 #9	SPG21 (ENSODEG00000016267) #10	EFCC1 (ENSODEG00000016555)	ACAD9 (ENSODEG00000016388)	ANKDD1A (ENSODEG00000016476) #11	PLEKHO2 (ENSODEG00000016749) #12	PIF1 (ENSODEG00000016408) #13	RBPMS2 (ENSODEG00000016172) #14	Oaz2 (ENSODEG00000016846) #15	ZNF609 (ENSODEG00000016415) #17	TRIP4 (ENSODEG00000016494) #18	ENSODEG00000016410	PCLAF (ENSODEG00000016992) #19	CSNK1G1 (ENSODEG00000016448) #21	PPIB (ENSODEG00000016713) #22	SNX22 (ENSODEG00000016526) #23	SNX1 (ENSODEG00000016535) #24	CIAO2A (ENSODEG00000017473) #25	DAPK2 (ENSODEG00000016756) ##26	HERC1 (ENSODEG00000016719) #27	FBXL22 (ENSODEG00000016765) #28	USP3 (ENSODEG00000017024) #29	CA12 (ENSODEG00000016537) #30	APH1B (ENSODEG00000016784) #31	RAB8B (ENSODEG00000016571) #32	ENSODEG00000016936	LACTB (ENSODEG00000016877) #34	TPM1 (ENSODEG00000017042) #35	TLN2 (ENSODEG00000016531) #37	ENSODEG00000016956
Long-tailed chinchilla	MODERN SPECIES	157	MTFMT (ENSCLAG00000014170) #9	SPG21 (ENSCLAG00000011678) #10	GP9 (ENSCLAG00000012298)	ENSCLAG00000010665	ENSCLAG00000012065	ANKDD1A (ENSCLAG00000007792) #11	PLEKHO2 (ENSCLAG00000008540) #12	PIF1 (ENSCLAG00000011808) #13	RBPMS2 (ENSCLAG00000016082) #14	OAZ2 (ENSCLAG00000014124) #15	ZNF609 (ENSCLAG00000006038) #17	TRIP4 (ENSCLAG00000006872) #18	PCLAF (ENSCLAG00000006954) #19	CSNK1G1 (ENSCLAG00000008023) #21	GNG5B (ENSCLAG00000017711)	PPIB (ENSCLAG00000011151) #22	SNX22 (ENSCLAG00000008526) #23	SNX1 (ENSCLAG00000008927) #24	CIAO2A (ENSCLAG00000012173) #25	DAPK2 (ENSCLAG00000013163) ##26	HERC1 (ENSCLAG00000016354) #27	FBXL22 (ENSCLAG00000014965) #28	USP3 (ENSCLAG00000012461) #29	CA12 (ENSCLAG00000009814) #30	APH1B (ENSCLAG00000014885) #31	RAB8B (ENSCLAG00000010690) #32	RPS27L (ENSCLAG00000010811)	LACTB (ENSCLAG00000007519) #34	TPM1 (ENSCLAG00000008921) #35	TLN2 (ENSCLAG00000009840) #37	ENSCLAG00000016591
Guinea pig	MODERN SPECIES		ENSCPOG00000007628	RFTN1 (ENSCPOG00000007616)	OXNAD1 (ENSCPOG00000026881)	DPH3 (ENSCPOG00000003477)	GALNT15 (ENSCPOG00000003476)	ANKRD28 (ENSCPOG00000015199)	BTD (ENSCPOG00000024569)	PLEKHO2 (ENSCPOG00000030376) #12	PIF1 (ENSCPOG00000008211) #13	RBPMS2 (ENSCPOG00000007695) #14	OAZ2 (ENSCPOG00000001960) #15	ZNF609 (ENSCPOG00000001956) #17	TRIP4 (ENSCPOG00000006483) #18	PCLAF (ENSCPOG00000033197) #19	CSNK1G1 (ENSCPOG00000000256) #21	PPIB (ENSCPOG00000034437) #22	SNX22 (ENSCPOG00000000254) #23	SNX1 (ENSCPOG00000000253) #24	CIAO2A (ENSCPOG00000033175) #25	DAPK2 (ENSCPOG00000000890) #26	ENSCPOG00000030019	ENSCPOG00000007146	PTP4A1 (ENSCPOG00000032105)	LGSN (ENSCPOG00000008736)	KHDRBS2 (ENSCPOG00000025621)	PRIM2 (ENSCPOG00000003912)	ENSCPOG00000035048	RAB23 (ENSCPOG00000030218)	BAG2 (ENSCPOG00000040302)	ZNF451 (ENSCPOG00000002491)	BEND6 (ENSCPOG00000015453)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000048650	ENSHGLG00000013211	ENSHGLG00000045786	ENSHGLG00000032983	ENSHGLG00000013426	ENSHGLG00000018246 #11	PLEKHO2 (ENSHGLG00000014806) #12	PIF1 (ENSHGLG00000015390) #13	RBPMS2 (ENSHGLG00000008504) #14	Oaz2 (ENSHGLG00000034510) #15	ENSHGLG00000045868	ZNF609 (ENSHGLG00000005885) #17	TRIP4 (ENSHGLG00000009286) #18	PCLAF (ENSHGLG00000042208) #19	CSNK1G1 (ENSHGLG00000008107) #21	PPIB (ENSHGLG00000036036) #22	SNX22 (ENSHGLG00000016133) #23	SNX1 (ENSHGLG00000015096) #24	CIAO2A (ENSHGLG00000018054) #25	DAPK2 (ENSHGLG00000013578) #26	HERC1 (ENSHGLG00000015429) #27	ENSHGLG00000006447 #28	USP3 (ENSHGLG00000008193) #29	ENSHGLG00000049466	ENSHGLG00000044085	ENSHGLG00000014469	CA12 (ENSHGLG00000036575) #30	APH1B (ENSHGLG00000031885) #31	ENSHGLG00000042104	RAB8B (ENSHGLG00000049367) #32	ENSHGLG00000008830
Naked mole-rat female	MODERN SPECIES	6	CPNE1 (ENSHGLG00000013228)	SPAG4 (ENSHGLG00000017758)	ENSHGLG00000045390	ENSHGLG00000005886	ENSHGLG00000010420	ENSHGLG00000039585	GDF5 (ENSHGLG00000017753)	ENSHGLG00000021218	UQCC1 (ENSHGLG00000017446)	FAM83C (ENSHGLG00000040004)	EIF6 (ENSHGLG00000010214)	MMP24 (ENSHGLG00000046205)	PROCR (ENSHGLG00000009583)	ENSHGLG00000036931	EDEM2 (ENSHGLG00000039402)	ENSHGLG00000011522 #22	TRPC4AP (ENSHGLG00000015614)	GSS (ENSHGLG00000013619)	ENSHGLG00000049123	ACSS2 (ENSHGLG00000013444)	GGT7 (ENSHGLG00000007389)	ENSHGLG00000005296	ENSHGLG00000020370	TP53INP2 (ENSHGLG00000033209)	ENSHGLG00000008565	MAP1LC3A (ENSHGLG00000009257)	ENSHGLG00000010397	ITCH (ENSHGLG00000005001)	AHCY (ENSHGLG00000009751)	ENSHGLG00000031940	RALY (ENSHGLG00000017779)
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00940000170308	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000163765
Pika	MODERN SPECIES	3074															CSNK1G1 (ENSOPRG00000015279) #21	PPIB (ENSOPRG00000015271) #22	SNX22 (ENSOPRG00000015260) #23	SNX1 (ENSOPRG00000015240) #24	CIAO2A (ENSOPRG00000015229) #25
Rabbit	MODERN SPECIES	8	SLC51B (ENSOCUG00000010723) #8	MTFMT (ENSOCUG00000016147) #9	ENSOCUG00000016136 #10	ANKDD1A (ENSOCUG00000005353) #11	ENSOCUG00000031622	PLEKHO2 (ENSOCUG00000022486) #12	PIF1 (ENSOCUG00000005347) #13	RBPMS2 (ENSOCUG00000010388) #14	OAZ2 (ENSOCUG00000017341) #15	ZNF609 (ENSOCUG00000002325) #17	TRIP4 (ENSOCUG00000002322) #18	ENSOCUG00000032107	ENSOCUG00000022442	CSNK1G1 (ENSOCUG00000012015) #21	ENSOCUG00000014619	PPIB (ENSOCUG00000012012) #22	SNX1 (ENSOCUG00000005449) #24	SNX22 (ENSOCUG00000021757) #23	CIAO2A (ENSOCUG00000009575) #25	DAPK2 (ENSOCUG00000000435) #26	HERC1 (ENSOCUG00000014796) #27	FBXL22 (ENSOCUG00000014791) #28	USP3 (ENSOCUG00000014775) #29	CA12 (ENSOCUG00000004632) #30	APH1B (ENSOCUG00000004627) #31	ENSOCUG00000035129	RAB8B (ENSOCUG00000010005) #32	ENSOCUG00000038276	LACTB (ENSOCUG00000009995) #34	ENSOCUG00000030711	TPM1 (ENSOCUG00000014122) #35
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158007 #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	8367																ENSSARG00000009442 #22
Common shrew	MODERN SPECIES	7942																ENSSARG00000009121 #22
Hedgehog	MODERN SPECIES	6137																ENSEEUG00000003383 #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00980000198667	ENSGT00940000171177	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Suina	ANCESTRAL SPECIES	12	ENSGT01030000234535.E	ENSGT00950000183103.d.a.b	ENSGT00390000016258	ENSGT01030000234618.E	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Pig	MODERN SPECIES		FECH (ENSSSCG00000004541)	ENSSSCG00000033063	NARS1 (ENSSSCG00000004542)	MTFMT (ENSSSCG00000004543) #9	SPG21 (ENSSSCG00000004544) #10	ANKDD1A (ENSSSCG00000004545) #11	ENSSSCG00000037998	PLEKHO2 (ENSSSCG00000004547) #12	PIF1 (ENSSSCG00000004548) #13	RBPMS2 (ENSSSCG00000004549) #14	OAZ2 (ENSSSCG00000004550) #15	ZNF609 (ENSSSCG00000004551) #17	TRIP4 (ENSSSCG00000004552) #18	PCLAF (ENSSSCG00000004554) #19	CSNK1G1 (ENSSSCG00000004558) #21	PPIB (ENSSSCG00000034137) #22	SNX22 (ENSSSCG00000037275) #23	SNX1 (ENSSSCG00000042703) #24	ENSSSCG00000047502	CIAO2A (ENSSSCG00000034124) #25	DAPK2 (ENSSSCG00000021588) #26	HERC1 (ENSSSCG00000004561) #27	FBXL22 (ENSSSCG00000038786) #28	ENSSSCG00000040895	USP3 (ENSSSCG00000028737) #29	ENSSSCG00000059505	CA12 (ENSSSCG00000004565) #30	APH1B (ENSSSCG00000032949) #31	RAB8B (ENSSSCG00000026571) #32	RPS27L (ENSSSCG00000023158)	LACTB (ENSSSCG00000004569) #34
Chacoan peccary	MODERN SPECIES	192	ST8SIA3 (ENSCWAG00000002575)	ONECUT2 (ENSCWAG00000002566)	FECH (ENSCWAG00000002562)	NARS1 (ENSCWAG00000002547)	MTFMT (ENSCWAG00000002528) #9	SPG21 (ENSCWAG00000002477) #10	ANKDD1A (ENSCWAG00000002251) #11	PLEKHO2 (ENSCWAG00000002191) #12	PIF1 (ENSCWAG00000002168) #13	ENSCWAG00000002157 #14	OAZ2 (ENSCWAG00000002125) #15	ZNF609 (ENSCWAG00000002093) #17	TRIP4 (ENSCWAG00000002078) #18	PCLAF (ENSCWAG00000002050) #19	CSNK1G1 (ENSCWAG00000002007) #21	PPIB (ENSCWAG00000001979) #22	SNX22 (ENSCWAG00000001957) #23	SNX1 (ENSCWAG00000001903) #24	CIAO2A (ENSCWAG00000001878) #25	ENSCWAG00000001864	DAPK2 (ENSCWAG00000001815) #26	HERC1 (ENSCWAG00000001772) #27	FBXL22 (ENSCWAG00000001746) #28	USP3 (ENSCWAG00000001654) #29	CA12 (ENSCWAG00000001590) #30	APH1B (ENSCWAG00000001558) #31	RAB8B (ENSCWAG00000001533) #32	RPS27L (ENSCWAG00000001510)	LACTB (ENSCWAG00000001493) #34	TPM1 (ENSCWAG00000001033) #35	ENSCWAG00000000960
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Camelidae	ANCESTRAL SPECIES	83	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29
Arabian camel	MODERN SPECIES	32	ENSCDRG00005001457	RASL12 (ENSCDRG00005001442) #7	SLC51B (ENSCDRG00005001421) #8	MTFMT (ENSCDRG00005001402) #9	SPG21 (ENSCDRG00005001313) #10	ANKDD1A (ENSCDRG00005001275) #11	PLEKHO2 (ENSCDRG00005001250) #12	PIF1 (ENSCDRG00005001226) #13	RBPMS2 (ENSCDRG00005001201) #14	OAZ2 (ENSCDRG00005001180) #15	ENSCDRG00005001164	ZNF609 (ENSCDRG00005001141) #17	TRIP4 (ENSCDRG00005001105) #18	PCLAF (ENSCDRG00005001066) #19	CSNK1G1 (ENSCDRG00005000938) #21	PPIB (ENSCDRG00005000872) #22	SNX22 (ENSCDRG00005000848) #23	SNX1 (ENSCDRG00005000795) #24	CIAO2A (ENSCDRG00005000749) #25	DAPK2 (ENSCDRG00005000708) #26	ENSCDRG00005000684	HERC1 (ENSCDRG00005000577) #27	FBXL22 (ENSCDRG00005000551) #28	ENSCDRG00005000539 #29	ENSCDRG00005000513	ENSCDRG00005000501
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Blue whale	MODERN SPECIES	11	KBTBD13 (ENSBMSG00010005585)	SLC51B (ENSBMSG00010005596) #8	MTFMT (ENSBMSG00010005614) #9	SPG21 (ENSBMSG00010005631) #10	ENSBMSG00010005663 #11	PLEKHO2 (ENSBMSG00010005672) #12	PIF1 (ENSBMSG00010005687) #13	ENSBMSG00010005716	ENSBMSG00010005733 #14	OAZ2 (ENSBMSG00010005772) #15	ZNF609 (ENSBMSG00010005793) #17	TRIP4 (ENSBMSG00010005819) #18	ENSBMSG00010005839	PCLAF (ENSBMSG00010005857) #19	CSNK1G1 (ENSBMSG00010005923) #21	PPIB (ENSBMSG00010006066) #22	SNX22 (ENSBMSG00010006090) #23	SNX1 (ENSBMSG00010000037) #24	ENSBMSG00010000129 #25	DAPK2 (ENSBMSG00010000179) #26	HERC1 (ENSBMSG00010000279) #27	FBXL22 (ENSBMSG00010000348) #28	USP3 (ENSBMSG00010000419) #29	ENSBMSG00010000553	CA12 (ENSBMSG00010000588) #30	APH1B (ENSBMSG00010000650) #31	RAB8B (ENSBMSG00010000668) #32	RPS27L (ENSBMSG00010000683)	LACTB (ENSBMSG00010000701) #34	TPM1 (ENSBMSG00010000776) #35	TLN2 (ENSBMSG00010001027) #37
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Sperm whale	MODERN SPECIES	1120															ENSPCTG00005020610	PPIB (ENSPCTG00005020591) #22	SNX22 (ENSPCTG00005020552) #23
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.n #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000153112.E.f.a.a.a	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.n #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b	ENSGT00390000007218	ENSGT00390000008908	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093.c	ENSGT00390000008748.b #17	ENSGT00940000164579.e.b	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00390000016972.a.b.a.b.b.b	ENSGT00940000159282 #30	ENSGT00390000002049.c.b.n #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Beluga whale	MODERN SPECIES	20	RASL12 (ENSDLEG00000008693) #7	SLC51B (ENSDLEG00000008675) #8	MTFMT (ENSDLEG00000008641) #9	SPG21 (ENSDLEG00000008610) #10	PLEKHO2 (ENSDLEG00000008575) #12	PIF1 (ENSDLEG00000008546) #13	ENSDLEG00000008373	RBPMS2 (ENSDLEG00000008351) #14	OAZ2 (ENSDLEG00000008260) #15	ENSDLEG00000008230	ZNF609 (ENSDLEG00000008149) #17	ENSDLEG00000008094	TRIP4 (ENSDLEG00000008070) #18	PCLAF (ENSDLEG00000008054) #19	CSNK1G1 (ENSDLEG00000007686) #21	PPIB (ENSDLEG00000007588) #22	SNX22 (ENSDLEG00000007576) #23	SNX1 (ENSDLEG00000007564) #24	FAM96A (ENSDLEG00000007545) #25	DAPK2 (ENSDLEG00000007441) #26	HERC1 (ENSDLEG00000007012) #27	FBXL22 (ENSDLEG00000006969) #28	USP3 (ENSDLEG00000006410) #29	ENSDLEG00000006340	CA12 (ENSDLEG00000006335) #30	APH1B (ENSDLEG00000006318) #31	RAB8B (ENSDLEG00000006295) #32	ENSDLEG00000006289	LACTB (ENSDLEG00000006271) #34	ENSDLEG00000006267 #35	ENSDLEG00000006265 #35
Narwhal	MODERN SPECIES	308	SLC51B (ENSMMNG00015011224) #8	MTFMT (ENSMMNG00015011203) #9	ENSMMNG00015011175 #11	ENSMMNG00015011156	PLEKHO2 (ENSMMNG00015011123) #12	PIF1 (ENSMMNG00015011099) #13	ENSMMNG00015011083	ENSMMNG00015011066 #14	OAZ2 (ENSMMNG00015011033) #15	ENSMMNG00015011020	ZNF609 (ENSMMNG00015010998) #17	ENSMMNG00015010983	TRIP4 (ENSMMNG00015010965) #18	PCLAF (ENSMMNG00015010932) #19	CSNK1G1 (ENSMMNG00015010862) #21	PPIB (ENSMMNG00015010790) #22	SNX22 (ENSMMNG00015010760) #23	SNX1 (ENSMMNG00015010702) #24	CIAO2A (ENSMMNG00015010655) #25	DAPK2 (ENSMMNG00015010615) #26	HERC1 (ENSMMNG00015010474) #27	FBXL22 (ENSMMNG00015010396) #28	USP3 (ENSMMNG00015010320) #29	ENSMMNG00015010276	CA12 (ENSMMNG00015010246) #30	APH1B (ENSMMNG00015010212) #31	RAB8B (ENSMMNG00015010188) #32	ENSMMNG00015010167 #33	LACTB (ENSMMNG00015010148) #34	TPM1 (ENSMMNG00015009957) #35	TLN2 (ENSMMNG00015009817) #37
Vaquita	MODERN SPECIES	11	KBTBD13 (ENSPSNG00000003554)	RASL12 (ENSPSNG00000003572) #7	SLC51B (ENSPSNG00000003589) #8	MTFMT (ENSPSNG00000003605) #9	SPG21 (ENSPSNG00000003632) #10	ENSPSNG00000003661 #11	PLEKHO2 (ENSPSNG00000003679) #12	PIF1 (ENSPSNG00000003695) #13	ENSPSNG00000003712	ENSPSNG00000003721 #14	ENSPSNG00000003739 #15	ZNF609 (ENSPSNG00000003759) #17	TRIP4 (ENSPSNG00000003783) #18	PCLAF (ENSPSNG00000003831) #19	CSNK1G1 (ENSPSNG00000003875) #21	PPIB (ENSPSNG00000003907) #22	ENSPSNG00000003925 #23	SNX1 (ENSPSNG00000003988) #24	CIAO2A (ENSPSNG00000004040) #25	DAPK2 (ENSPSNG00000004069) #26	HERC1 (ENSPSNG00000000120) #27	FBXL22 (ENSPSNG00000000167) #28	USP3 (ENSPSNG00000000231) #29	ENSPSNG00000000353	CA12 (ENSPSNG00000000410) #30	APH1B (ENSPSNG00000000505) #31	RAB8B (ENSPSNG00000000524) #32	ENSPSNG00000000555	LACTB (ENSPSNG00000000570) #34	TPM1 (ENSPSNG00000000684) #35	TLN2 (ENSPSNG00000000901) #37
Dolphin	MODERN SPECIES	1659															CSNK1G1 (ENSTTRG00000013297) #21	ENSTTRG00000013293 #22	SNX22 (ENSTTRG00000013288) #23	SNX1 (ENSTTRG00000013278) #24	ENSTTRG00000013275 #25
Pecora	ANCESTRAL SPECIES	6	ENSGT00390000005163	ENSGT00940000157901	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Percora_a	ANCESTRAL SPECIES	8	ENSGT00390000005163	ENSGT00940000157901	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000157901	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00390000015789.c.b	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00390000012916.y.a.b
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000157901	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00940000154509.y.b.a.a.a	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00390000015789.c.b	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062.e #34	ENSGT00940000154699 #37	ENSGT00940000162206.g	ENSGT00940000162206.h
Bos	ANCESTRAL SPECIES	13	ENSGT00940000157901	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.b.b.a.b.b.a.a	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00940000154509.y.b.a.a.a	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00390000015789.c.b	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.a.a.b.b	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a.w	ENSGT00390000001062.e #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00390000012916.y.a.b
Bos_b	ANCESTRAL SPECIES	11	ENSGT00390000005163	ENSGT00940000157901	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.b.b.a.b.b.a.a	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00390000015789.c.b	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.a.a.b.b	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a.v	ENSGT00390000001062.e #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00390000012916.y.a.b
Hybrid Bos Indicus	MODERN SPECIES	1	PTGDR (ENSBIXG00005003916)	ENSBIXG00005003914	PLEKHO2 (ENSBIXG00005022913) #12	PIF1 (ENSBIXG00005022827) #13	RBPMS2 (ENSBIXG00005022800) #14	ENSBIXG00005022761	OAZ2 (ENSBIXG00005022749) #15	ENSBIXG00005022714	ZNF609 (ENSBIXG00005022684) #17	ENSBIXG00005005451	ENSBIXG00005022611	PCLAF (ENSBIXG00005003860) #19	ENSBIXG00005003842	CSNK1G1 (ENSBIXG00005022464) #21	SNX1 (ENSBIXG00005022359) #24	PPIB (ENSBIXG00005003793) #22	SNX22 (ENSBIXG00005022245) #23	ENSBIXG00005022228	CIAO2A (ENSBIXG00005005877) #25	DAPK2 (ENSBIXG00005022140) #26	HERC1 (ENSBIXG00005021976) #27	ENSBIXG00005003627	FBXL22 (ENSBIXG00005021495) #28	USP3 (ENSBIXG00005003618) #29	CA12 (ENSBIXG00005003586) #30	APH1B (ENSBIXG00005021158) #31	RAB8B (ENSBIXG00005021126) #32	RPS27L (ENSBIXG00005021094)	ENSBIXG00005021042 #34	ENSBIXG00005021018	TPM1 (ENSBIXG00005020956) #35
Cow	MODERN SPECIES	1	GNG2 (ENSBTAG00000003043)	RTRAF (ENSBTAG00000021944)	NID2 (ENSBTAG00000021945)	ENSBTAG00000001423	PTGDR (ENSBTAG00000006703)	PLEKHO2 (ENSBTAG00000008411) #12	PIF1 (ENSBTAG00000007638) #13	RBPMS2 (ENSBTAG00000011037) #14	OAZ2 (ENSBTAG00000015806) #15	ZNF609 (ENSBTAG00000015808) #17	TRIP4 (ENSBTAG00000014493) #18	ENSBTAG00000049725	PCLAF (ENSBTAG00000039462) #19	CSNK1G1 (ENSBTAG00000016823) #21	ENSBTAG00000049412	PPIB (ENSBTAG00000016822) #22	SNX22 (ENSBTAG00000016821) #23	SNX1 (ENSBTAG00000002014) #24	CIAO2A (ENSBTAG00000002012) #25	DAPK2 (ENSBTAG00000011820) #26	HERC1 (ENSBTAG00000053677) #27	ENSBTAG00000052707	ENSBTAG00000051076	ENSBTAG00000054388	ENSBTAG00000050908	ENSBTAG00000019474 #27	FBXL22 (ENSBTAG00000008807) #28	USP3 (ENSBTAG00000008805) #29	CA12 (ENSBTAG00000019390) #30	APH1B (ENSBTAG00000010641) #31	RAB8B (ENSBTAG00000011146) #32
Bos_a	ANCESTRAL SPECIES	53	ENSGT00390000005163	ENSGT00940000157901	ENSGT01100000263481.n.a.b.b.a.b.b.b.a.b.a.a	ENSGT00390000000628.m.b	ENSGT01050000244902.b.c.b	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.b.b.a.b.b.a.a	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00940000154509.y.b.a.a.a	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.a.a.b.b	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a.w	ENSGT00390000001062.e #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00390000012916.y.a.b
Domestic yak	MODERN SPECIES	2	ENSBGRG00000022887	ENSBGRG00000022900	ENSBGRG00000022925	ENSBGRG00000022958	PTGDR (ENSBGRG00000023005)	ENSBGRG00000023030	PLEKHO2 (ENSBGRG00000023055) #12	PIF1 (ENSBGRG00000023115) #13	RBPMS2 (ENSBGRG00000023193) #14	OAZ2 (ENSBGRG00000023251) #15	ZNF609 (ENSBGRG00000023364) #17	ENSBGRG00000023399	TRIP4 (ENSBGRG00000023426) #18	PCLAF (ENSBGRG00000023565) #19	CSNK1G1 (ENSBGRG00000023776) #21	PPIB (ENSBGRG00000024663) #22	SNX22 (ENSBGRG00000024686) #23	ENSBGRG00000024710	SNX1 (ENSBGRG00000024722) #24	CIAO2A (ENSBGRG00000024771) #25	DAPK2 (ENSBGRG00000024836) #26	HERC1 (ENSBGRG00000025007) #27	FBXL22 (ENSBGRG00000025878) #28	USP3 (ENSBGRG00000025898) #29	CA12 (ENSBGRG00000026023) #30	APH1B (ENSBGRG00000003624) #31	RAB8B (ENSBGRG00000003715) #32	ENSBGRG00000003772	LACTB (ENSBGRG00000003854) #34	ENSBGRG00000003930	ENSBGRG00000003954
Wild yak	MODERN SPECIES	658	ENSBMUG00000005089	NID2 (ENSBMUG00000005047)	ENSBMUG00000004970	ENSBMUG00000004942	PTGDR (ENSBMUG00000004918)	PLEKHO2 (ENSBMUG00000004851) #12	PIF1 (ENSBMUG00000004819) #13	RBPMS2 (ENSBMUG00000004804) #14	OAZ2 (ENSBMUG00000004795) #15	ENSBMUG00000004747	ZNF609 (ENSBMUG00000004718) #17	ENSBMUG00000004704	TRIP4 (ENSBMUG00000004690) #18	PCLAF (ENSBMUG00000004667) #19	CSNK1G1 (ENSBMUG00000004474) #21	PPIB (ENSBMUG00000004309) #22	SNX22 (ENSBMUG00000004300) #23	SNX1 (ENSBMUG00000004277) #24	CIAO2A (ENSBMUG00000004234) #25	DAPK2 (ENSBMUG00000004177) #26	HERC1 (ENSBMUG00000004110) #27	FBXL22 (ENSBMUG00000004031) #28	USP3 (ENSBMUG00000003861) #29	CA12 (ENSBMUG00000003495) #30	APH1B (ENSBMUG00000003435) #31	RAB8B (ENSBMUG00000003418) #32	ENSBMUG00000003407	LACTB (ENSBMUG00000003387) #34
American bison	MODERN SPECIES	3065				ENSBBBG00000001890	PTGDR (ENSBBBG00000010775)	PLEKHO2 (ENSBBBG00000010766) #12	PIF1 (ENSBBBG00000010755) #13	ENSBBBG00000010738 #14	OAZ2 (ENSBBBG00000010729) #15	ENSBBBG00000010721	ZNF609 (ENSBBBG00000010716) #17	ENSBBBG00000001869	TRIP4 (ENSBBBG00000010678) #18	PCLAF (ENSBBBG00000001865) #19	CSNK1G1 (ENSBBBG00000010615) #21	PPIB (ENSBBBG00000010506) #22	SNX22 (ENSBBBG00000010498) #23	SNX1 (ENSBBBG00000010491) #24	CIAO2A (ENSBBBG00000010454) #25	DAPK2 (ENSBBBG00000008435) ##26	HERC1 (ENSBBBG00000008434) #27	FBXL22 (ENSBBBG00000010384) #28	USP3 (ENSBBBG00000010371) #29	CA12 (ENSBBBG00000010315) #30	ENSBBBG00000010302 #31	ENSBBBG00000010299	ENSBBBG00000010291	ENSBBBG00000000108	ENSBBBG00000000128	ENSBBBG00000008318	ENSBBBG00000010249
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000155517	ENSGT01100000263497.C	ENSGT00390000005163	ENSGT00940000157901	ENSGT01050000244902.b.c.b	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00390000015789.c.b	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00900000143730	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00390000012916.y.a.b
Rambouillet Sheep	MODERN SPECIES	23	GNG2 (ENSOARG00020023501)	RTRAF (ENSOARG00020023533)	NID2 (ENSOARG00020023556)	ENSOARG00020023613	ENSOARG00020023633	ENSOARG00020023643	PTGDR (ENSOARG00020023654)	PLEKHO2 (ENSOARG00020023668) #12	PIF1 (ENSOARG00020023726) #13	RBPMS2 (ENSOARG00020023782) #14	OAZ2 (ENSOARG00020023813) #15	ZNF609 (ENSOARG00020023856) #17	TRIP4 (ENSOARG00020023887) #18	PCLAF (ENSOARG00020023913) #19	CSNK1G1 (ENSOARG00020024000) #21	PPIB (ENSOARG00020024684) #22	SNX22 (ENSOARG00020007311) #23	SNX1 (ENSOARG00020007347) #24	ENSOARG00020007473 #25	DAPK2 (ENSOARG00020007501) #26	HERC1 (ENSOARG00020007683) #27	FBXL22 (ENSOARG00020007949) #28	USP3 (ENSOARG00020008050) #29	APH1B (ENSOARG00020008742) #31	RAB8B (ENSOARG00020008761) #32	RPS27L (ENSOARG00020008837)	LACTB (ENSOARG00020008870) #34	TPM1 (ENSOARG00020009011) #35	TLN2 (ENSOARG00020009618) #37	ENSOARG00020010758	VPS13C (ENSOARG00020011169)
Goat	MODERN SPECIES	1	ENSCHIG00000007229	GNG2 (ENSCHIG00000010532)	RTRAF (ENSCHIG00000018490)	NID2 (ENSCHIG00000018670)	PTGDR (ENSCHIG00000025921)	PLEKHO2 (ENSCHIG00000025653) #12	PIF1 (ENSCHIG00000014856) #13	RBPMS2 (ENSCHIG00000024439) #14	OAZ2 (ENSCHIG00000012878) #15	ENSCHIG00000009189	ZNF609 (ENSCHIG00000018695) #17	TRIP4 (ENSCHIG00000023818) #18	ENSCHIG00000014821	PCLAF (ENSCHIG00000026661) #19	CSNK1G1 (ENSCHIG00000011234) #21	PPIB (ENSCHIG00000019546) #22	SNX22 (ENSCHIG00000020098) #23	SNX1 (ENSCHIG00000021997) #24	ENSCHIG00000006307 #25	DAPK2 (ENSCHIG00000002285) ##26	HERC1 (ENSCHIG00000012880) #27	FBXL22 (ENSCHIG00000023260) #28	ENSCHIG00000015955	USP3 (ENSCHIG00000019905) #29	CA12 (ENSCHIG00000004709) #30	APH1B (ENSCHIG00000019602) #31	ENSCHIG00000016246	RAB8B (ENSCHIG00000019412) #32	RPS27L (ENSCHIG00000012945)	LACTB (ENSCHIG00000027114) #34	ENSCHIG00000018051
Siberian musk deer	MODERN SPECIES	367	ENSMMSG00000015674	NID2 (ENSMMSG00000015694)	ENSMMSG00000015752	ENSMMSG00000015763	PTGDR (ENSMMSG00000015794)	ENSMMSG00000015839	ENSMMSG00000015854	PLEKHO2 (ENSMMSG00000015873) #12	PIF1 (ENSMMSG00000015904) #13	ENSMMSG00000015991 #14	OAZ2 (ENSMMSG00000016048) #15	ZNF609 (ENSMMSG00000016094) #17	TRIP4 (ENSMMSG00000016140) #18	ENSMMSG00000016175 #19	CSNK1G1 (ENSMMSG00000016321) #21	PPIB (ENSMMSG00000016470) #22	SNX22 (ENSMMSG00000016511) #23	SNX1 (ENSMMSG00000016577) #24	ENSMMSG00000016708 #25	DAPK2 (ENSMMSG00000016817) #26	HERC1 (ENSMMSG00000016958) #27	FBXL22 (ENSMMSG00000017073) #28	USP3 (ENSMMSG00000017104) #29	CA12 (ENSMMSG00000017392) #30	APH1B (ENSMMSG00000017507) #31	RAB8B (ENSMMSG00000017553) #32	RPS27L (ENSMMSG00000017596)	LACTB (ENSMMSG00000017653) #34	ENSMMSG00000017695
Yarkand deer	MODERN SPECIES	3	FRMD6 (ENSCHYG00000025157)	GNG2 (ENSCHYG00000025234)	ENSCHYG00000025262	NID2 (ENSCHYG00000025307)	ENSCHYG00000025691	PTGDR (ENSCHYG00000025706)	PLEKHO2 (ENSCHYG00000004921) #12	PIF1 (ENSCHYG00000005000) #13	RBPMS2 (ENSCHYG00000005045) #14	OAZ2 (ENSCHYG00000005167) #15	ZNF609 (ENSCHYG00000005274) #17	ENSCHYG00000005301	TRIP4 (ENSCHYG00000005334) #18	PCLAF (ENSCHYG00000005442) #19	CSNK1G1 (ENSCHYG00000005550) #21	ENSCHYG00000005700 #22	SNX22 (ENSCHYG00000005765) #23	SNX1 (ENSCHYG00000005852) #24	CIAO2A (ENSCHYG00000005972) #25	ENSCHYG00000005987 ##26	HERC1 (ENSCHYG00000006046) #27	FBXL22 (ENSCHYG00000006365) #28	USP3 (ENSCHYG00000006402) #29	ENSCHYG00000006718	CA12 (ENSCHYG00000006765) #30	ENSCHYG00000006915	APH1B (ENSCHYG00000006935) #31	RAB8B (ENSCHYG00000006985) #32	ENSCHYG00000007049	ENSCHYG00000007078 #33	LACTB (ENSCHYG00000007150) #34
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00940000164336 #33	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Greater horseshoe bat	MODERN SPECIES	24	KBTBD13 (ENSRFEG00010007789)	RASL12 (ENSRFEG00010007809) #7	SLC51B (ENSRFEG00010007859) #8	MTFMT (ENSRFEG00010007904) #9	SPG21 (ENSRFEG00010007949) #10	ANKDD1A (ENSRFEG00010008103) #11	PLEKHO2 (ENSRFEG00010008395) #12	PIF1 (ENSRFEG00010008484) #13	RBPMS2 (ENSRFEG00010008568) #14	OAZ2 (ENSRFEG00010008661) #15	ENSRFEG00010008724	ZNF609 (ENSRFEG00010008748) #17	TRIP4 (ENSRFEG00010008797) #18	PCLAF (ENSRFEG00010008826) #19	CSNK1G1 (ENSRFEG00010008947) #21	PPIB (ENSRFEG00010009072) #22	SNX22 (ENSRFEG00010009114) #23	SNX1 (ENSRFEG00010009203) #24	CIAO2A (ENSRFEG00010009329) #25	DAPK2 (ENSRFEG00010009400) #26	ENSRFEG00010009525	ENSRFEG00010009583 #27	FBXL22 (ENSRFEG00010009644) #28	USP3 (ENSRFEG00010009665) #29	CA12 (ENSRFEG00010009883) #30	APH1B (ENSRFEG00010009953) #31	RAB8B (ENSRFEG00010010042) #32	ENSRFEG00010010077	LACTB (ENSRFEG00010010152) #34	ENSRFEG00010010201	TPM1 (ENSRFEG00010010379) #35
Microbat	MODERN SPECIES	1052	RASL12 (ENSMLUG00000016438) #7	SLC51B (ENSMLUG00000016432) #8	MTFMT (ENSMLUG00000016414) #9	SPG21 (ENSMLUG00000016404) #10	ANKDD1A (ENSMLUG00000016394) #11	ENSMLUG00000029215	PLEKHO2 (ENSMLUG00000016390) #12	PIF1 (ENSMLUG00000025361) #13	RBPMS2 (ENSMLUG00000013394) #14	OAZ2 (ENSMLUG00000022795) #15	ZNF609 (ENSMLUG00000013380) #17	ENSMLUG00000025127	TRIP4 (ENSMLUG00000013367) #18	ENSMLUG00000013366 #19	CSNK1G1 (ENSMLUG00000015983) #21	PPIB (ENSMLUG00000015974) #22	SNX22 (ENSMLUG00000015965) #23	SNX1 (ENSMLUG00000015949) #24	ENSMLUG00000028233 #25	DAPK2 (ENSMLUG00000000714) ##26	HERC1 (ENSMLUG00000015305) #27	FBXL22 (ENSMLUG00000024826) #28	USP3 (ENSMLUG00000015294) #29	ENSMLUG00000000719 #25	CA12 (ENSMLUG00000007452) #30	APH1B (ENSMLUG00000026317) #31	RAB8B (ENSMLUG00000015889) #32	ENSMLUG00000005516 #34	TPM1 (ENSMLUG00000007003) #35	TLN2 (ENSMLUG00000009302) #37	ENSMLUG00000026677
Megabat	MODERN SPECIES	937															CSNK1G1 (ENSPVAG00000016873) #21	PPIB (ENSPVAG00000016872) #22	SNX22 (ENSPVAG00000016871) #23	SNX1 (ENSPVAG00000016870) #24	CIAO2A (ENSPVAG00000016869) #25	DAPK2 (ENSPVAG00000016867) ##26	HERC1 (ENSPVAG00000016862) #27	FBXL22 (ENSPVAG00000016860) #28	USP3 (ENSPVAG00000016857) #29
Equus	ANCESTRAL SPECIES	4	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00950000186329	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT01030000234542.b.a.a.b.a.b.l ##35
Horse	MODERN SPECIES		KBTBD13 (ENSECAG00000003990)	RASL12 (ENSECAG00000009263) #7	SLC51B (ENSECAG00000012241) #8	MTFMT (ENSECAG00000012255) #9	SPG21 (ENSECAG00000012886) #10	ANKDD1A (ENSECAG00000017284) #11	PLEKHO2 (ENSECAG00000022172) #12	PIF1 (ENSECAG00000005316) #13	RBPMS2 (ENSECAG00000015345) #14	ZNF609 (ENSECAG00000024130) #17	OAZ2 (ENSECAG00000018627) #15	TRIP4 (ENSECAG00000024689) #18	ENSECAG00000026891 #19	CSNK1G1 (ENSECAG00000006597) #21	ENSECAG00000052585	PPIB (ENSECAG00000017164) #22	SNX22 (ENSECAG00000017605) #23	SNX1 (ENSECAG00000019019) #24	CIAO2A (ENSECAG00000010303) #25	DAPK2 (ENSECAG00000012621) #26	HERC1 (ENSECAG00000022635) #27	ENSECAG00000022138	ENSECAG00000060278	FBXL22 (ENSECAG00000016041) #28	USP3 (ENSECAG00000016660) #29	CA12 (ENSECAG00000017217) #30	APH1B (ENSECAG00000001985) #31	RAB8B (ENSECAG00000036923) #32	RPS27L (ENSECAG00000013269)	LACTB (ENSECAG00000053700) #34	TPM1 (ENSECAG00000014949) #35
Donkey	DUPLICATION
Donkey	MODERN SPECIES	11	KBTBD13 (ENSEASG00005036296)	RASL12 (ENSEASG00005006494) #7	SLC51B (ENSEASG00005029917) #8	MTFMT (ENSEASG00005006503) #9	SPG21 (ENSEASG00005006508) #10	ANKDD1A (ENSEASG00005006509) #11	PLEKHO2 (ENSEASG00005033707) #12	PIF1 (ENSEASG00005006515) #13	RBPMS2 (ENSEASG00005006523) #14	OAZ2 (ENSEASG00005024051) #15	ZNF609 (ENSEASG00005006535) #17	TRIP4 (ENSEASG00005006538) #18	ENSEASG00005006541 #19	CSNK1G1 (ENSEASG00005006542) #21	ENSEASG00005033915	PPIB (ENSEASG00005024211) #22	SNX22 (ENSEASG00005036797) #23	SNX1 (ENSEASG00005006579) #24	CIAO2A (ENSEASG00005036756) #25	DAPK2 (ENSEASG00005006626) #26	ENSEASG00005006635	HERC1 (ENSEASG00005006663) #27	FBXL22 (ENSEASG00005031318) #28	USP3 (ENSEASG00005006813) #29	CA12 (ENSEASG00005005325) #30	APH1B (ENSEASG00005005328) #31	ENSEASG00005005334	RAB8B (ENSEASG00005038003) #32	RPS27L (ENSEASG00005031631)	LACTB (ENSEASG00005005348) #34	ENSEASG00005031100 #35
Donkey	MODERN SPECIES	15	BNC2 (ENSEASG00005019302)	CCDC171 (ENSEASG00005019311)	PSIP1 (ENSEASG00005019322)	SNAPC3 (ENSEASG00005019324)	TTC39B (ENSEASG00005019326)	FREM1 (ENSEASG00005019331)	CER1 (ENSEASG00005024797)	ZDHHC21 (ENSEASG00005019341)	NFIB (ENSEASG00005019346)	MPDZ (ENSEASG00005019366)	LURAP1L (ENSEASG00005031483)	TYRP1 (ENSEASG00005019393)	PTPRD (ENSEASG00005010959)	ENSEASG00005010725	DMAC1 (ENSEASG00005010719)	ENSEASG00005026087 #22	KDM4C (ENSEASG00005010714)	GLDC (ENSEASG00005010707)	UHRF2 (ENSEASG00005010699)	TPD52L3 (ENSEASG00005036119)	IL33 (ENSEASG00005010691)	ENSEASG00005029347	KIAA2026 (ENSEASG00005010685)	MLANA (ENSEASG00005028588)	ERMP1 (ENSEASG00005010680)	RIC1 (ENSEASG00005010673)	PDCD1LG2 (ENSEASG00005010667)	CD274 (ENSEASG00005010663)	PLGRKT (ENSEASG00005034012)	ENSEASG00005010659	INSL6 (ENSEASG00005037792)
Carnivora	ANCESTRAL SPECIES		ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00940000164336 #33	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00940000164336 #33	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00860000136093	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00940000164336 #33	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
leopard	MODERN SPECIES	7	RASL12 (ENSPPRG00000024033) #7	SLC51B (ENSPPRG00000024145) #8	MTFMT (ENSPPRG00000024322) #9	SPG21 (ENSPPRG00000024485) #10	ANKDD1A (ENSPPRG00000021337) #11	PLEKHO2 (ENSPPRG00000018753) #12	PIF1 (ENSPPRG00000018031) #13	RBPMS2 (ENSPPRG00000014944) #14	OAZ2 (ENSPPRG00000014549) #15	ENSPPRG00000014194 #15	ENSPPRG00000014718	ZNF609 (ENSPPRG00000013974) #17	TRIP4 (ENSPPRG00000013668) #18	PCLAF (ENSPPRG00000013231) #19	CSNK1G1 (ENSPPRG00000012107) #21	PPIB (ENSPPRG00000008423) #22	SNX22 (ENSPPRG00000008270) #23	SNX1 (ENSPPRG00000008151) #24	CIAO2A (ENSPPRG00000007232) #25	DAPK2 (ENSPPRG00000007000) #26	HERC1 (ENSPPRG00000006219) #27	FBXL22 (ENSPPRG00000004585) #28	USP3 (ENSPPRG00000004518) #29	CA12 (ENSPPRG00000002981) #30	APH1B (ENSPPRG00000002047) #31	RAB8B (ENSPPRG00000000194) #32	ENSPPRG00000023087 #33	LACTB (ENSPPRG00000023298) #34	TPM1 (ENSPPRG00000023409) #35	ENSPPRG00000023820 ##35	TLN2 (ENSPPRG00000024152) #37
lion	MODERN SPECIES	6	UBAP1L (ENSPLOG00000010817)	KBTBD13 (ENSPLOG00000010867)	RASL12 (ENSPLOG00000010906) #7	SLC51B (ENSPLOG00000010972) #8	MTFMT (ENSPLOG00000011004) #9	SPG21 (ENSPLOG00000011106) #10	ANKDD1A (ENSPLOG00000011255) #11	PLEKHO2 (ENSPLOG00000011538) #12	PIF1 (ENSPLOG00000011589) #13	RBPMS2 (ENSPLOG00000011704) #14	OAZ2 (ENSPLOG00000011762) #15	ZNF609 (ENSPLOG00000011829) #17	TRIP4 (ENSPLOG00000011893) #18	PCLAF (ENSPLOG00000012084) #19	CSNK1G1 (ENSPLOG00000012225) #21	PPIB (ENSPLOG00000012340) #22	SNX22 (ENSPLOG00000012383) #23	SNX1 (ENSPLOG00000012451) #24	CIAO2A (ENSPLOG00000012765) #25	DAPK2 (ENSPLOG00000012895) #26	HERC1 (ENSPLOG00000013050) #27	FBXL22 (ENSPLOG00000013600) #28	USP3 (ENSPLOG00000013694) #29	CA12 (ENSPLOG00000014410) #30	APH1B (ENSPLOG00000014734) #31	ENSPLOG00000014920	RAB8B (ENSPLOG00000014958) #32	ENSPLOG00000014988 #33	LACTB (ENSPLOG00000015093) #34	TPM1 (ENSPLOG00000015292) #35	TLN2 (ENSPLOG00000015663) #37
Tiger	MODERN SPECIES	204	UBAP1L (ENSPTIG00000021877)	ENSPTIG00000005399	RASL12 (ENSPTIG00000021753) #7	SLC51B (ENSPTIG00000021613) #8	MTFMT (ENSPTIG00000021473) #9	SPG21 (ENSPTIG00000021286) #10	ANKDD1A (ENSPTIG00000020864) #11	PLEKHO2 (ENSPTIG00000020432) #12	PIF1 (ENSPTIG00000018479) #13	RBPMS2 (ENSPTIG00000017879) #14	ENSPTIG00000017213 #15	ZNF609 (ENSPTIG00000015732) #17	TRIP4 (ENSPTIG00000014502) #18	PCLAF (ENSPTIG00000011600) #19	CSNK1G1 (ENSPTIG00000007978) #21	PPIB (ENSPTIG00000007537) #22	SNX22 (ENSPTIG00000006889) #23	SNX1 (ENSPTIG00000000317) #24	CIAO2A (ENSPTIG00000021384) #25	DAPK2 (ENSPTIG00000020724) #26	HERC1 (ENSPTIG00000016505) #27	ENSPTIG00000014494 #28	USP3 (ENSPTIG00000010649) #29	CA12 (ENSPTIG00000008179) #30	APH1B (ENSPTIG00000007498) #31	ENSPTIG00000007292	RAB8B (ENSPTIG00000005636) #32	ENSPTIG00000000664	LACTB (ENSPTIG00000021953) #34	TPM1 (ENSPTIG00000020687) #35	TLN2 (ENSPTIG00000013165) #37
Cat	MODERN SPECIES	237	UBAP1L (ENSFCAG00000044872)	KBTBD13 (ENSFCAG00000030165)	RASL12 (ENSFCAG00000011458) #7	SLC51B (ENSFCAG00000026998) #8	MTFMT (ENSFCAG00000011455) #9	SPG21 (ENSFCAG00000011454) #10	ANKDD1A (ENSFCAG00000011452) #11	PLEKHO2 (ENSFCAG00000040159) #12	PIF1 (ENSFCAG00000011335) #13	RBPMS2 (ENSFCAG00000032451) #14	OAZ2 (ENSFCAG00000011332) #15	ZNF609 (ENSFCAG00000011328) #17	TRIP4 (ENSFCAG00000010618) #18	PCLAF (ENSFCAG00000039663) #19	CSNK1G1 (ENSFCAG00000004183) #21	PPIB (ENSFCAG00000033734) #22	SNX22 (ENSFCAG00000004182) #23	SNX1 (ENSFCAG00000004179) #24	CIAO2A (ENSFCAG00000046793) #25	DAPK2 (ENSFCAG00000004177) #26	HERC1 (ENSFCAG00000008990) #27	FBXL22 (ENSFCAG00000046790) #28	USP3 (ENSFCAG00000028788) #29	CA12 (ENSFCAG00000029058) #30	APH1B (ENSFCAG00000040244) #31	ENSFCAG00000053373	ENSFCAG00000053387	RAB8B (ENSFCAG00000031584) #32	ENSFCAG00000033932 #33	LACTB (ENSFCAG00000027796) #34	TPM1 (ENSFCAG00000037855) #35
Caniformia	ANCESTRAL SPECIES	12	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Ferret	MODERN SPECIES	228	PDCD7 (ENSMPUG00000000523)	UBAP1L (ENSMPUG00000000525)	KBTBD13 (ENSMPUG00000019445)	RASL12 (ENSMPUG00000000526) #7	MTFMT (ENSMPUG00000000527) #9	SPG21 (ENSMPUG00000000528) #10	ANKDD1A (ENSMPUG00000000544) #11	PLEKHO2 (ENSMPUG00000000547) #12	PIF1 (ENSMPUG00000000549) #13	RBPMS2 (ENSMPUG00000000553) #14	OAZ2 (ENSMPUG00000000565) #15	ZNF609 (ENSMPUG00000000567) #17	TRIP4 (ENSMPUG00000000568) #18	PCLAF (ENSMPUG00000000569) #19	CSNK1G1 (ENSMPUG00000000571) #21	PPIB (ENSMPUG00000000574) #22	SNX22 (ENSMPUG00000000582) #23	SNX1 (ENSMPUG00000000602) #24	CIAO2A (ENSMPUG00000000605) #25	DAPK2 (ENSMPUG00000000608) ##26	HERC1 (ENSMPUG00000000611) #27	FBXL22 (ENSMPUG00000000624) #28	USP3 (ENSMPUG00000000628) #29	CA12 (ENSMPUG00000000635) #30	APH1B (ENSMPUG00000000639) #31	RAB8B (ENSMPUG00000000643) #32	RPS27L (ENSMPUG00000000647)	LACTB (ENSMPUG00000000649) #34	TPM1 (ENSMPUG00000000651) #35	TLN2 (ENSMPUG00000000655) #37	ENSMPUG00000000658
American mink	MODERN SPECIES	46	KBTBD13 (ENSNVIG00000017694)	RASL12 (ENSNVIG00000017710) #7	SLC51B (ENSNVIG00000017732) #8	MTFMT (ENSNVIG00000017747) #9	SPG21 (ENSNVIG00000017776) #10	ANKDD1A (ENSNVIG00000017875) #11	PKHO2 (ENSNVIG00000017954) #12	PIF1 (ENSNVIG00000018009) #13	RBPMS2 (ENSNVIG00000018045) #14	OAZ2 (ENSNVIG00000018100) #15	ZNF609 (ENSNVIG00000018141) #17	ENSNVIG00000018166	PAF (ENSNVIG00000018189) #19	KC1G1 (ENSNVIG00000018229) #21	ENSNVIG00000018254	PPIB (ENSNVIG00000018257) #22	SNX22 (ENSNVIG00000018265) #23	SNX1 (ENSNVIG00000018288) #24	CIAO2A (ENSNVIG00000018334) #25	DAPK2 (ENSNVIG00000018354) #26	HERC1 (ENSNVIG00000018418) #27	ENSNVIG00000018479 #28	UBP3 (ENSNVIG00000018489) #29	CA12 (ENSNVIG00000018640) #30	APH1B (ENSNVIG00000018717) #31	RAB8B (ENSNVIG00000018748) #32	ENSNVIG00000018758 #33	LACTB (ENSNVIG00000018777) #34	TPM1 (ENSNVIG00000018804) #35	ENSNVIG00000018989	TLN2 (ENSNVIG00000019004) #37
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000158007.o #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1577																ENSAMEG00000024744 #22
Giant Panda	MODERN SPECIES	1766																ENSAMEG00000027769 #22
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000158007.p.a #22
Giant Panda	MODERN SPECIES	1667																ENSAMEG00000026387 #22
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007.p.b #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35
Ursus	ANCESTRAL SPECIES	37	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007.p.b #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00950000185788	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32
Polar bear	MODERN SPECIES	320	CILP (ENSUMAG00000012508)	CLPX (ENSUMAG00000012513)	ENSUMAG00000012533	RASL12 (ENSUMAG00000012538) #7	SLC51B (ENSUMAG00000012546) #8	MTFMT (ENSUMAG00000012561) #9	SPG21 (ENSUMAG00000012587) #10	PLEKHO2 (ENSUMAG00000012599) #12	PIF1 (ENSUMAG00000012605) #13	RBPMS2 (ENSUMAG00000012614) #14	OAZ2 (ENSUMAG00000012619) #15	ZNF609 (ENSUMAG00000012625) #17	TRIP4 (ENSUMAG00000012640) #18	PCLAF (ENSUMAG00000012643) #19	CSNK1G1 (ENSUMAG00000012647) #21	PPIB (ENSUMAG00000012657) #22	SNX22 (ENSUMAG00000012660) #23	SNX1 (ENSUMAG00000012667) #24	CIAO2A (ENSUMAG00000012686) #25	DAPK2 (ENSUMAG00000012690) ##26	ENSUMAG00000012698	HERC1 (ENSUMAG00000012791) #27	ENSUMAG00000013533 #28	USP3 (ENSUMAG00000013554) #29	CA12 (ENSUMAG00000013569) #30	APH1B (ENSUMAG00000013596) #31	ENSUMAG00000013601	RAB8B (ENSUMAG00000013613) #32
American black bear	MODERN SPECIES	1842														TRIP4 (ENSUAMG00000022913) #18	CSNK1G1 (ENSUAMG00000022850) #21	PPIB (ENSUAMG00000022843) #22
Giant Panda	MODERN SPECIES	15	UBAP1L (ENSAMEG00000030738)	KBTBD13 (ENSAMEG00000025813)	RASL12 (ENSAMEG00000029508) #7	ENSAMEG00000002772 #8	MTFMT (ENSAMEG00000002756) #9	SPG21 (ENSAMEG00000002738) #10	ANKDD1A (ENSAMEG00000002723) #11	PLEKHO2 (ENSAMEG00000029578) #12	PIF1 (ENSAMEG00000002688) #13	ENSAMEG00000002664 #14	OAZ2 (ENSAMEG00000002648) #15	ZNF609 (ENSAMEG00000002630) #17	TRIP4 (ENSAMEG00000002591) #18	PCLAF (ENSAMEG00000002586) #19	CSNK1G1 (ENSAMEG00000002545) #21	ENSAMEG00000002525 #22	SNX22 (ENSAMEG00000002516) #23	SNX1 (ENSAMEG00000002465) #24	CIAO2A (ENSAMEG00000002448) #25	DAPK2 (ENSAMEG00000002421) #26	HERC1 (ENSAMEG00000002389) #27	FBXL22 (ENSAMEG00000002387) #28	USP3 (ENSAMEG00000002345) #29	CA12 (ENSAMEG00000002328) #30	APH1B (ENSAMEG00000002312) #31	ENSAMEG00000031452	RAB8B (ENSAMEG00000002292) #32	RPS27L (ENSAMEG00000007270)	LACTB (ENSAMEG00000007262) #34	ENSAMEG00000007224 #35	TLN2 (ENSAMEG00000012004) #37
Canidae	ANCESTRAL SPECIES	15	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167.q #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00900000143658	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34
Red fox	MODERN SPECIES		ENSVVUG00000013847	RASL12 (ENSVVUG00000013838) #7	SLC51B (ENSVVUG00000013831) #8	MTFMT (ENSVVUG00000013827) #9	SPG21 (ENSVVUG00000013822) #10	ANKDD1A (ENSVVUG00000013820) #11	PLEKHO2 (ENSVVUG00000013810) #12	ENSVVUG00000013805	RBPMS2 (ENSVVUG00000013801) #14	ENSVVUG00000013799	ZNF609 (ENSVVUG00000013796) #17	TRIP4 (ENSVVUG00000013776) #18	PCLAF (ENSVVUG00000013774) #19	ENSVVUG00000013767	CSNK1G1 (ENSVVUG00000013708) #21	PPIB (ENSVVUG00000013694) #22	SNX22 (ENSVVUG00000013682) #23	SNX1 (ENSVVUG00000013655) #24	ENSVVUG00000013649	CIAO2A (ENSVVUG00000013643) #25	DAPK2 (ENSVVUG00000013611) ##26	HERC1 (ENSVVUG00000012408) #27	FBXL22 (ENSVVUG00000012296) #28	ENSVVUG00000011501 #29	ENSVVUG00000011447 #29	CA12 (ENSVVUG00000011399) #30	APH1B (ENSVVUG00000011390) #31	ENSVVUG00000011389	RAB8B (ENSVVUG00000011367) #32	ENSVVUG00000011320	LACTB (ENSVVUG00000011297) #34
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000161629	ENSGT00940000160167.q #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00390000003248.a.a.a.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000169428	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT00950000184921.b
Dingo	MODERN SPECIES	205	KBTBD13 (ENSCAFG00020008818)	ENSCAFG00020008821 #7	SLC51B (ENSCAFG00020008823) #8	MTFMT (ENSCAFG00020008826) #9	SPG21 (ENSCAFG00020008856) #10	ANKDD1A (ENSCAFG00020008860) #11	PLEKHO2 (ENSCAFG00020008874) #12	PIF1 (ENSCAFG00020008886) #13	ENSCAFG00020008906	RBPMS2 (ENSCAFG00020008908) #14	OAZ2 (ENSCAFG00020008922) #15	ZNF609 (ENSCAFG00020008938) #17	TRIP4 (ENSCAFG00020008960) #18	ENSCAFG00020008966	CSNK1G1 (ENSCAFG00020009012) #21	PPIB (ENSCAFG00020009317) #22	SNX22 (ENSCAFG00020009320) #23	SNX1 (ENSCAFG00020009326) #24	CIAO2A (ENSCAFG00020009343) #25	DAPK2 (ENSCAFG00020009392) ##26	ENSCAFG00020009407	ENSCAFG00020009410 #27	FBXL22 (ENSCAFG00020009419) #28	USP3 (ENSCAFG00020009426) #29	CA12 (ENSCAFG00020009454) #30	APH1B (ENSCAFG00020009470) #31	RAB8B (ENSCAFG00020009474) #32	ENSCAFG00020009482	ENSCAFG00020009484 #33	LACTB (ENSCAFG00020009493) #34	TPM1 (ENSCAFG00020009521) #35
Dog	DUPLICATION
Dog	MODERN SPECIES	23	PDCD7 (ENSCAFG00845024725)	KBTBD13 (ENSCAFG00845024657)	SLC51B (ENSCAFG00845024623) #8	MTFMT (ENSCAFG00845024367) #9	SPG21 (ENSCAFG00845024150) #10	ANKDD1A (ENSCAFG00845023984) #11	PLEKHO2 (ENSCAFG00845023843) #12	PIF1 (ENSCAFG00845023739) #13	ENSCAFG00845023679	RBPMS2 (ENSCAFG00845023573) #14	OAZ2 (ENSCAFG00845023459) #15	ZNF609 (ENSCAFG00845023283) #17	TRIP4 (ENSCAFG00845023208) #18	PCLAF (ENSCAFG00845023122) #19	CSNK1G1 (ENSCAFG00845022773) #21	PPIB (ENSCAFG00845022646) #22	ENSCAFG00845022581 #23	SNX1 (ENSCAFG00845022186) #24	CIAO2A (ENSCAFG00845022079) #25	DAPK2 (ENSCAFG00845021918) #26	HERC1 (ENSCAFG00845021555) #27	FBXL22 (ENSCAFG00845021485) #28	USP3 (ENSCAFG00845021124) #29	CA12 (ENSCAFG00845020844) #30	APH1B (ENSCAFG00845020653) #31	RAB8B (ENSCAFG00845020576) #32	RPS27L (ENSCAFG00845020453)	LACTB (ENSCAFG00845020386) #34	TPM1 (ENSCAFG00845019944) #35	TLN2 (ENSCAFG00845019529) #37	ENSCAFG00845019202
Dog	MODERN SPECIES	37	HOXB9 (ENSCAFG00845009956)	HOXB8 (ENSCAFG00845009931)	HOXB7 (ENSCAFG00845009899)	HOXB6 (ENSCAFG00845009871)	HOXB5 (ENSCAFG00845009832)	HOXB4 (ENSCAFG00845017264)	HOXB3 (ENSCAFG00845017188)	HOXB2 (ENSCAFG00845017142)	HOXB1 (ENSCAFG00845017096)	SKAP1 (ENSCAFG00845016959)	SNX11 (ENSCAFG00845016720)	CBX1 (ENSCAFG00845016596)	NFE2L1 (ENSCAFG00845016388)	COPZ2 (ENSCAFG00845016156)	CDK5RAP3 (ENSCAFG00845016051)	ENSCAFG00845016000 #22	PRR15L (ENSCAFG00845015978)	PNPO (ENSCAFG00845015876)	SP2 (ENSCAFG00845015786)	SP6 (ENSCAFG00845015746)	SCRN2 (ENSCAFG00845015686)	LRRC46 (ENSCAFG00845015603)	MRPL10 (ENSCAFG00845015539)	OSBPL7 (ENSCAFG00845015415)	TBX21 (ENSCAFG00845015330)	TBKBP1 (ENSCAFG00845015281)	KPNB1 (ENSCAFG00845015226)	NPEPPS (ENSCAFG00845014931)	ENSCAFG00845014840	GPR179 (ENSCAFG00845014777)	SOCS7 (ENSCAFG00845014686)
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00390000008092.b	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Xenarthra	ANCESTRAL SPECIES	197								ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30
Armadillo	MODERN SPECIES	2336						PLEKHO2 (ENSDNOG00000034684) #12	PIF1 (ENSDNOG00000003780) #13	RBPMS2 (ENSDNOG00000048895) #14	OAZ2 (ENSDNOG00000037947) #15	ZNF609 (ENSDNOG00000040739) #17	ENSDNOG00000030638	ENSDNOG00000038952	TRIP4 (ENSDNOG00000008654) #18	PCLAF (ENSDNOG00000041418) #19	ENSDNOG00000018857 #21	ENSDNOG00000031206 #22	SNX22 (ENSDNOG00000017270) #23	SNX1 (ENSDNOG00000019013) #24	CIAO2A (ENSDNOG00000025148) #25	DAPK2 (ENSDNOG00000036558) ##26	ENSDNOG00000015233	HERC1 (ENSDNOG00000005556) #27	FBXL22 (ENSDNOG00000005549) #28	USP3 (ENSDNOG00000005529) #29	CA12 (ENSDNOG00000043949) #30
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00390000017392	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Tenrec	MODERN SPECIES	4974															ENSETEG00000012672 #21	PPIB (ENSETEG00000012671) #22	SNX22 (ENSETEG00000012667) #23
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00390000017392	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.c.b ##26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Elephant	MODERN SPECIES	466	PDCD7 (ENSLAFG00000004977)	KBTBD13 (ENSLAFG00000031048)	RASL12 (ENSLAFG00000006982) #7	SLC51B (ENSLAFG00000030011) #8	MTFMT (ENSLAFG00000006985) #9	SPG21 (ENSLAFG00000002639) #10	ANKDD1A (ENSLAFG00000002637) #11	PLEKHO2 (ENSLAFG00000001775) #12	PIF1 (ENSLAFG00000023289) #13	RBPMS2 (ENSLAFG00000018725) #14	OAZ2 (ENSLAFG00000001466) #15	ZNF609 (ENSLAFG00000001465) #17	TRIP4 (ENSLAFG00000017612) #18	PCLAF (ENSLAFG00000017606) #19	CSNK1G1 (ENSLAFG00000018699) #21	PPIB (ENSLAFG00000018698) #22	SNX22 (ENSLAFG00000018696) #23	SNX1 (ENSLAFG00000018693) #24	CIAO2A (ENSLAFG00000011114) #25	DAPK2 (ENSLAFG00000000338) ##26	HERC1 (ENSLAFG00000004068) #27	FBXL22 (ENSLAFG00000031273) #28	USP3 (ENSLAFG00000004065) #29	CA12 (ENSLAFG00000001773) #30	APH1B (ENSLAFG00000001772) #31	RAB8B (ENSLAFG00000001771) #32	RPS27L (ENSLAFG00000015475)	LACTB (ENSLAFG00000015480) #34	TPM1 (ENSLAFG00000004960) #35	TLN2 (ENSLAFG00000000520) #37	ENSLAFG00000013413
Hyrax	MODERN SPECIES	5048															CSNK1G1 (ENSPCAG00000012341) #21	PPIB (ENSPCAG00000012288) #22	SNX22 (ENSPCAG00000012209) #23	SNX1 (ENSPCAG00000012062) #24	CIAO2A (ENSPCAG00000012020) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00390000007209.l	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000169460	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Opossum	MODERN SPECIES		UBAP1L (ENSMODG00000029751)	RASL12 (ENSMODG00000038689) #7	ENSMODG00000048415 #8	MTFMT (ENSMODG00000010418) #9	SPG21 (ENSMODG00000010438) #10	ANKDD1A (ENSMODG00000010452) #11	ENSMODG00000010455	PLEKHO2 (ENSMODG00000010466) #12	PIF1 (ENSMODG00000010476) #13	ENSMODG00000010487 #14	OAZ2 (ENSMODG00000010496) #15	ZNF609 (ENSMODG00000010510) #17	TRIP4 (ENSMODG00000010743) #18	PCLAF (ENSMODG00000037309) #19	CSNK1G1 (ENSMODG00000010802) #21	PPIB (ENSMODG00000010819) #22	SNX22 (ENSMODG00000010831) #23	SNX1 (ENSMODG00000010898) #24	CIAO2A (ENSMODG00000010909) #25	DAPK2 (ENSMODG00000010926) #26	HERC1 (ENSMODG00000010971) #27	FBXL22 (ENSMODG00000046180) #28	USP3 (ENSMODG00000011011) #29	CA12 (ENSMODG00000011032) #30	APH1B (ENSMODG00000038735) #31	RAB8B (ENSMODG00000011048) #32	ENSMODG00000011078	RPS27L (ENSMODG00000042701)	LACTB (ENSMODG00000011098) #34	TPM1 (ENSMODG00000039857) #35	TLN2 (ENSMODG00000011273) #37
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00390000007209.l	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000169460	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00390000007209.l	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000161629	ENSGT00940000160167 #7	ENSGT00390000010409 #8	ENSGT00390000017828 #9	ENSGT00390000007857 #10	ENSGT00940000154170.B #11	ENSGT00390000007209.l	ENSGT00530000063760.a #12	ENSGT00530000063561 #13	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252.a.a.a #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000017697.a #25	ENSGT00940000153424.a.a.d #26	ENSGT00940000155907.b #27	ENSGT00390000003748 #28	ENSGT00940000157850 #29	ENSGT00940000159282 #30	ENSGT00390000002049.c.b #31	ENSGT00940000155363 #32	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #34	ENSGT01030000234542.b.a.a.b.a.a #35	ENSGT00940000154699 #37	ENSGT00940000162206
koala	MODERN SPECIES		RASL12 (ENSPCIG00000035910) #7	ENSPCIG00000024118 #8	MTFMT (ENSPCIG00000024121) #9	SPG21 (ENSPCIG00000024124) #10	ANKDD1A (ENSPCIG00000032384) #11	ENSPCIG00000029444	PLEKHO2 (ENSPCIG00000029445) #12	PIF1 (ENSPCIG00000029446) #13	RBPMS2 (ENSPCIG00000029447) #14	OAZ2 (ENSPCIG00000029448) #15	ZNF609 (ENSPCIG00000029449) #17	TRIP4 (ENSPCIG00000029450) #18	ENSPCIG00000029451 #19	CSNK1G1 (ENSPCIG00000030780) #21	ENSPCIG00000029452	PPIB (ENSPCIG00000021286) #22	SNX22 (ENSPCIG00000021287) #23	SNX1 (ENSPCIG00000029454) #24	ENSPCIG00000029455 #25	DAPK2 (ENSPCIG00000029457) #26	HERC1 (ENSPCIG00000033481) #27	FBXL22 (ENSPCIG00000003757) #28	USP3 (ENSPCIG00000003759) #29
Common wonbat	MODERN SPECIES	581	KBTBD13 (ENSVURG00010016711)	RASL12 (ENSVURG00010016692) #7	MTFMT (ENSVURG00010016671) #9	SPG21 (ENSVURG00010016616) #10	ANKDD1A (ENSVURG00010016514) #11	ENSVURG00010016494	PLEKHO2 (ENSVURG00010016489) #12	PIF1 (ENSVURG00010016477) #13	RBPMS2 (ENSVURG00010016465) #14	OAZ2 (ENSVURG00010016452) #15	ZNF609 (ENSVURG00010016444) #17	TRIP4 (ENSVURG00010016411) #18	ENSVURG00010016398 #19	ENSVURG00010016389	ENSVURG00010016372 #21	PPIB (ENSVURG00010016362) #22	ENSVURG00010016350 #23	SNX1 (ENSVURG00010016300) #24	CIAO2A (ENSVURG00010016275) #25	DAPK2 (ENSVURG00010016252) ##26	HERC1 (ENSVURG00010016220) #27	FBXL22 (ENSVURG00010016203) #28	USP3 (ENSVURG00010016157) #29	CA12 (ENSVURG00010016134) #30	APH1B (ENSVURG00010016112) #31	RAB8B (ENSVURG00010016099) #32	ENSVURG00010016082	LACTB (ENSVURG00010016066) #34	TPM1 (ENSVURG00010015990) #35	TLN2 (ENSVURG00010015950) #37	ENSVURG00010015922
Wallaby	MODERN SPECIES	6281															ENSMEUG00000002990 #21	PPIB (ENSMEUG00000002985) #22	SNX22 (ENSMEUG00000002981) #23
Tasmanian devil	MODERN SPECIES	1	KBTBD13 (ENSSHAG00000031944)	RASL12 (ENSSHAG00000010405) #7	ENSSHAG00000010231 #8	SPG21 (ENSSHAG00000009982) #10	MTFMT (ENSSHAG00000012265) #9	ANKDD1A (ENSSHAG00000009607) #11	ENSSHAG00000009145	PLEKHO2 (ENSSHAG00000030172) #12	PIF1 (ENSSHAG00000008322) #13	RBPMS2 (ENSSHAG00000031923) #14	OAZ2 (ENSSHAG00000025120) #15	ZNF609 (ENSSHAG00000004069) #17	TRIP4 (ENSSHAG00000000040) #18	PCLAF (ENSSHAG00000030585) #19	CSNK1G1 (ENSSHAG00000018581) #21	PPIB (ENSSHAG00000024480) #22	SNX22 (ENSSHAG00000018564) #23	SNX1 (ENSSHAG00000018508) #24	CIAO2A (ENSSHAG00000023450) #25	DAPK2 (ENSSHAG00000018240) #26	HERC1 (ENSSHAG00000017933) #27	FBXL22 (ENSSHAG00000020700) #28	USP3 (ENSSHAG00000023305) #29	ENSSHAG00000022554	CA12 (ENSSHAG00000017499) #30	APH1B (ENSSHAG00000029286) #31	RAB8B (ENSSHAG00000024710) #32	ENSSHAG00000022073	LACTB (ENSSHAG00000017142) #34	TPM1 (ENSSHAG00000020913) #35	TLN2 (ENSSHAG00000015834) #37
Platypus	MODERN SPECIES	16	PARP6 (ENSOANG00000011312)	PKM (ENSOANG00000005173)	ENSOANG00000036970	SENP8 (ENSOANG00000001976)	MYO9A (ENSOANG00000013363)	NR2E3 (ENSOANG00000003155)	ENSOANG00000036588	CPEB1 (ENSOANG00000013361)	RPS17 (ENSOANG00000013360)	RBPMS2 (ENSOANG00000044956) #14	OAZ2 (ENSOANG00000013359) #15	ZNF609 (ENSOANG00000044888) #17	TRIP4 (ENSOANG00000013357) #18	ENSOANG00000013356 #19	CSNK1G1 (ENSOANG00000013355) #21	PPIB (ENSOANG00000013354) #22	ENSOANG00000041082	SNX1 (ENSOANG00000020925) #24	CIAO2A (ENSOANG00000009232) #25	DAPK2 (ENSOANG00000048356) #26	HERC1 (ENSOANG00000011146) #27	FBXL22 (ENSOANG00000049762) #28	USP3 (ENSOANG00000011148) #29	ENSOANG00000039721	CA12 (ENSOANG00000041610) #30	APH1B (ENSOANG00000011151) #31	RAB8B (ENSOANG00000011153) #32	RPS27L (ENSOANG00000041300)	LACTB (ENSOANG00000014411) #34	TPM1 (ENSOANG00000011217) #35	TLN2 (ENSOANG00000002149) #37
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654	ENSGT00940000156817	ENSGT00940000155524	ENSGT00940000164099.a.b	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00940000163963	ENSGT00390000008240.k	ENSGT00950000184218	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00390000018044.a	ENSGT00940000158534.d
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d
Aves	ANCESTRAL SPECIES	14	ENSGT00390000016025.b	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Neognathae	ANCESTRAL SPECIES	11	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Golden eagle	MODERN SPECIES	21	ZNF592 (ENSACCG00020001213)	SEC11A (ENSACCG00020001225)	NMB (ENSACCG00020001240)	ENSACCG00020001255	ENSACCG00020001284	DUOX2 (ENSACCG00020001374)	SORD (ENSACCG00020001471)	RBPMS2 (ENSACCG00020001502) #14	OAZ2 (ENSACCG00020001528) #15	ZNF609 (ENSACCG00020001543) #17	TRIP4 (ENSACCG00020001557) #18	ENSACCG00020001573	ENSACCG00020001580	PCLAF (ENSACCG00020001589) #19	CSNK1G1 (ENSACCG00020001617) #21	PPIB (ENSACCG00020001651) #22	SNX22 (ENSACCG00020001658) #23	SNX1 (ENSACCG00020001668) #24	PATL2 (ENSACCG00020001684)	ENSACCG00020001698	ENSACCG00020001704	TERB2 (ENSACCG00020001713)	RPS17 (ENSACCG00020001732)	CPEB1 (ENSACCG00020001856)	AP3B2 (ENSACCG00020002153)	ENSACCG00020002235	NR2E3 (ENSACCG00020002244)	MYO9A (ENSACCG00020002342)	SENP8 (ENSACCG00020002427)	GRAMD2A (ENSACCG00020002443)	PKM (ENSACCG00020002502)
Kakapo	MODERN SPECIES	1	ALPK3 (ENSSHBG00005015050)	ENSSHBG00005015021	ZNF592 (ENSSHBG00005015004)	SEC11A (ENSSHBG00005014989)	NMB (ENSSHBG00005014981)	ENSSHBG00005014953	ENSSHBG00005014927	DUOX2 (ENSSHBG00005014766)	SORD (ENSSHBG00005014719)	RBPMS2 (ENSSHBG00005014705) #14	OAZ2 (ENSSHBG00005014689) #15	ZNF609 (ENSSHBG00005014676) #17	TRIP4 (ENSSHBG00005014664) #18	ENSSHBG00005014652	CSNK1G1 (ENSSHBG00005014631) #21	PPIB (ENSSHBG00005014602) #22	SNX22 (ENSSHBG00005014583) #23	SNX1 (ENSSHBG00005014569) #24	PATL2 (ENSSHBG00005014553)	ENSSHBG00005014539	TERB2 (ENSSHBG00005014524)	RPS17 (ENSSHBG00005014506)	CPEB1 (ENSSHBG00005014488)	AP3B2 (ENSSHBG00005012354)	ENSSHBG00005012070	MYO9A (ENSSHBG00005011588)	SENP8 (ENSSHBG00005011299)	GRAMD2A (ENSSHBG00005011272)	PKM (ENSSHBG00005011232)	ENSSHBG00005011183	ENSSHBG00005011144
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Great tit	MODERN SPECIES	1	ALPK3 (ENSPMJG00000007184)	ENSPMJG00000007204	ZNF592 (ENSPMJG00000007227)	SEC11A (ENSPMJG00000007229)	ENSPMJG00000007230	ENSPMJG00000007231	ENSPMJG00000007236	DUOX2 (ENSPMJG00000007237)	SORD (ENSPMJG00000007244)	RBPMS2 (ENSPMJG00000007255) #14	OAZ2 (ENSPMJG00000007263) #15	ZNF609 (ENSPMJG00000007270) #17	TRIP4 (ENSPMJG00000007276) #18	ENSPMJG00000007282	CSNK1G1 (ENSPMJG00000007285) #21	PPIB (ENSPMJG00000007287) #22	SNX1 (ENSPMJG00000007292) #24	PATL2 (ENSPMJG00000007304)	B2M (ENSPMJG00000007309)	TERB2 (ENSPMJG00000007314)	RPS17 (ENSPMJG00000007315)	CPEB1 (ENSPMJG00000007322)	AP3B2 (ENSPMJG00000007328)	ENSPMJG00000007339	NR2E3 (ENSPMJG00000007347)	MYO9A (ENSPMJG00000007368)	SENP8 (ENSPMJG00000007419)	GRAMD2A (ENSPMJG00000007420)	PKM (ENSPMJG00000007426)	PARP6 (ENSPMJG00000007427)	CELF6 (ENSPMJG00000007429)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Flycatcher	MODERN SPECIES	1	ENSFALG00000009980	ENSFALG00000009958	ENSFALG00000009937	ENSFALG00000009927	ENSFALG00000009916	ENSFALG00000029080	ENSFALG00000009902	ENSFALG00000009896	DUOXA2 (ENSFALG00000023603)	ENSFALG00000009862	SORD (ENSFALG00000009847)	OAZ2 (ENSFALG00000009823) #15	ZNF609 (ENSFALG00000009819) #17	TRIP4 (ENSFALG00000009816) #18	CSNK1G1 (ENSFALG00000009808) #21	PPIB (ENSFALG00000023690) #22	SNX22 (ENSFALG00000009794) #23	SNX1 (ENSFALG00000009777) #24	PATL2 (ENSFALG00000009768)	ENSFALG00000009762	ENSFALG00000009750	RPS17 (ENSFALG00000009753)	ENSFALG00000009745	AP3B2 (ENSFALG00000009725)	ENSFALG00000009710	NR2E3 (ENSFALG00000009699)	MYO9A (ENSFALG00000009679)	GRAMD2A (ENSFALG00000009667)	PKM (ENSFALG00000009648)	ENSFALG00000023314	ENSFALG00000009616
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k.a	ENSGT00390000008240.k.b	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Medium ground finch	MODERN SPECIES	101	ALPK3 (ENSGFOG00000009761)	ENSGFOG00000009778	ZNF592 (ENSGFOG00000009788)	SEC11A (ENSGFOG00000009799)	ENSGFOG00000009804	ENSGFOG00000009810	ENSGFOG00000009820	ENSGFOG00000009853	DUOX2 (ENSGFOG00000009867)	SORD (ENSGFOG00000009907)	RBPMS2 (ENSGFOG00000009914) #14	OAZ2 (ENSGFOG00000000113) #15	ZNF609 (ENSGFOG00000000116) #17	TRIP4 (ENSGFOG00000000123) #18	CSNK1G1 (ENSGFOG00000000130) #21	PPIB (ENSGFOG00000000138) #22	SNX22 (ENSGFOG00000000147) #23	SNX1 (ENSGFOG00000000166) #24	PATL2 (ENSGFOG00000000196)	B2M (ENSGFOG00000000200)	TERB2 (ENSGFOG00000000206)	RPS17 (ENSGFOG00000000211)	CPEB1 (ENSGFOG00000000218)	AP3B2 (ENSGFOG00000000235)	ENSGFOG00000000254	NR2E3 (ENSGFOG00000000261)	MYO9A (ENSGFOG00000000296)	SENP8 (ENSGFOG00000000328)	GRAMD2A (ENSGFOG00000000336)	PKM (ENSGFOG00000000352)	PARP6 (ENSGFOG00000000426)
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k.a	ENSGT00390000008240.k.b	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Zebra finch	MODERN SPECIES	1	ALPK3 (ENSTGUG00000004879)	ENSTGUG00000019329	ZNF592 (ENSTGUG00000004860)	SEC11A (ENSTGUG00000014189)	NMB (ENSTGUG00000004854)	ENSTGUG00000004846	ENSTGUG00000004837	DUOX2 (ENSTGUG00000004765)	SORD (ENSTGUG00000004734)	RBPMS2 (ENSTGUG00000004722) #14	OAZ2 (ENSTGUG00000004712) #15	ZNF609 (ENSTGUG00000004705) #17	TRIP4 (ENSTGUG00000004673) #18	ENSTGUG00000029750	CSNK1G1 (ENSTGUG00000004638) #21	PPIB (ENSTGUG00000014219) #22	SNX1 (ENSTGUG00000004631) #24	PATL2 (ENSTGUG00000004619)	ENSTGUG00000004607	TERB2 (ENSTGUG00000004600)	RPS17 (ENSTGUG00000004581)	CPEB1 (ENSTGUG00000004564)	AP3B2 (ENSTGUG00000004517)	ENSTGUG00000004515	NR2E3 (ENSTGUG00000004498)	MYO9A (ENSTGUG00000004424)	SENP8 (ENSTGUG00000024203)	GRAMD2A (ENSTGUG00000004416)	PKM (ENSTGUG00000004376)	PARP6 (ENSTGUG00000004303)	CELF6 (ENSTGUG00000004278)
Common canary	MODERN SPECIES	12										RBPMS2 (ENSSCAG00000015868) #14	OAZ2 (ENSSCAG00000015871) #15	ZNF609 (ENSSCAG00000015873) #17	TRIP4 (ENSSCAG00000015875) #18	ENSSCAG00000015880	CSNK1G1 (ENSSCAG00000015883) #21	PPIB (ENSSCAG00000015887) #22	SNX22 (ENSSCAG00000015890) #23	SNX1 (ENSSCAG00000015891) #24	PATL2 (ENSSCAG00000015896)	B2M (ENSSCAG00000015902)	TERB2 (ENSSCAG00000015906)	RPS17 (ENSSCAG00000015912)	CPEB1 (ENSSCAG00000015919)	AP3B2 (ENSSCAG00000015923)	NR2E3 (ENSSCAG00000015929)	MYO9A (ENSSCAG00000015994)	SENP8 (ENSSCAG00000016155)	GRAMD2A (ENSSCAG00000016157)	PKM (ENSSCAG00000016160)	PARP6 (ENSSCAG00000016161)	CELF6 (ENSSCAG00000016162)
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Anatidae	ANCESTRAL SPECIES	23	ENSGT00390000016025.b	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b	ENSGT00940000154201.a.b
Duck	MODERN SPECIES	2	ALPK3 (ENSAPLG00000028618)	ENSAPLG00000005706	ENSAPLG00000020089	ZNF592 (ENSAPLG00000005632)	SEC11A (ENSAPLG00000005536)	ENSAPLG00000022821	ENSAPLG00000005531	ENSAPLG00000005516	DUOX2 (ENSAPLG00000005182)	SORD (ENSAPLG00000004875)	ENSAPLG00000018641	OAZ2 (ENSAPLG00000004764) #15	ZNF609 (ENSAPLG00000029091) #17	TRIP4 (ENSAPLG00000004612) #18	CSNK1G1 (ENSAPLG00000004446) #21	PPIB (ENSAPLG00000004432) #22	SNX1 (ENSAPLG00000003989) #24	B2M (ENSAPLG00000002378)	TERB2 (ENSAPLG00000017869)	ENSAPLG00000003843	CPEB1 (ENSAPLG00000003525)	AP3B2 (ENSAPLG00000003156)	NR2E3 (ENSAPLG00000003149)	MYO9A (ENSAPLG00000002464)	SENP8 (ENSAPLG00000002376)	GRAMD2A (ENSAPLG00000002217)	PKM (ENSAPLG00000001115)	PARP6 (ENSAPLG00000016442)	CELF6 (ENSAPLG00000016374)	HEXA (ENSAPLG00000016289)	ARIH1 (ENSAPLG00000016156)
Pink-footed goose	MODERN SPECIES	21															CSNK1G1 (ENSABRG00000016932) #21	PPIB (ENSABRG00000016936) #22	SNX22 (ENSABRG00000016949) #23	SNX1 (ENSABRG00000016986) #24	PATL2 (ENSABRG00000016996)	B2M (ENSABRG00000017005)	TERB2 (ENSABRG00000017012)	RPS17 (ENSABRG00000017016)	CPEB1 (ENSABRG00000017044)	AP3B2 (ENSABRG00000017050)	NR2E3 (ENSABRG00000017064)	MYO9A (ENSABRG00000017268)	SENP8 (ENSABRG00000019465)	GRAMD2A (ENSABRG00000019471)	PKM (ENSABRG00000019494)	PARP6 (ENSABRG00000019620)	CELF6 (ENSABRG00000019793)
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00960000189359	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00390000006654	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Chicken	MODERN SPECIES	1	ALPK3 (ENSGALG00010022253)	ENSGALG00010022302	ZNF592 (ENSGALG00010022312)	SEC11A (ENSGALG00010022347)	NMB (ENSGALG00010022375)	ENSGALG00010022385	DUOXA1L (ENSGALG00010022389)	DUOX2 (ENSGALG00010022419)	SORD (ENSGALG00010022440)	RBPMS2 (ENSGALG00010023239) #14	OAZ2 (ENSGALG00010023777) #15	ZNF609 (ENSGALG00010023792) #17	TRIP4 (ENSGALG00010023860) #18	ENSGALG00010023880	CSNK1G1 (ENSGALG00010023923) #21	PPIB (ENSGALG00010023244) #22	SNX22 (ENSGALG00010023255) #23	SNX1 (ENSGALG00010023261) #24	PATL2 (ENSGALG00010023271)	B2M (ENSGALG00010023281)	TERB2 (ENSGALG00010023307)	RPS17 (ENSGALG00010023334)	CPEB1 (ENSGALG00010023363)	AP3B2 (ENSGALG00010023384)	ENSGALG00010021035	NR2E3 (ENSGALG00010021039)	MYO9A (ENSGALG00010021062)	SENP8 (ENSGALG00010021082)	GRAMD2 (ENSGALG00010021093)	PKLR (ENSGALG00010021110)	PARP6 (ENSGALG00010021492)
Turkey	MODERN SPECIES	3	ENSMGAG00000000914	ENSMGAG00000000936	ENSMGAG00000000940	SEC11A (ENSMGAG00000000966)	ENSMGAG00000000977	ENSMGAG00000000979	ENSMGAG00000000987	ENSMGAG00000000994	ENSMGAG00000001088	ENSMGAG00000001128 #14	OAZ2 (ENSMGAG00000001138) #15	ZNF609 (ENSMGAG00000001151) #17	TRIP4 (ENSMGAG00000001166) #18	ENSMGAG00000019984	CSNK1G1 (ENSMGAG00000001191) #21	PPIB (ENSMGAG00000001283) #22	SNX22 (ENSMGAG00000019436) #23	SNX1 (ENSMGAG00000001289) #24	PATL2 (ENSMGAG00000001309)	ENSMGAG00000001345	TERB2 (ENSMGAG00000001350)	RPS17 (ENSMGAG00000001359)	ENSMGAG00000001387	AP3B2 (ENSMGAG00000017162)	ENSMGAG00000001442	MYO9A (ENSMGAG00000001473)	SENP8 (ENSMGAG00000001601)	GRAMD2A (ENSMGAG00000001611)	PKM (ENSMGAG00000001626)	ENSMGAG00000001695	CELF6 (ENSMGAG00000001804)
Japanese quail	MODERN SPECIES	1	SHF (ENSCJPG00005000161)	ENSCJPG00005000190	ALPK3 (ENSCJPG00005000680)	ZNF592 (ENSCJPG00005000689)	SEC11A (ENSCJPG00005000697)	NMB (ENSCJPG00005000700)	ENSCJPG00005000707	ENSCJPG00005000732	DUOX2 (ENSCJPG00005000755)	SORD (ENSCJPG00005000864)	RBPMS2 (ENSCJPG00005000876) #14	OAZ2 (ENSCJPG00005000890) #15	ZNF609 (ENSCJPG00005000920) #17	TRIP4 (ENSCJPG00005000964) #18	CSNK1G1 (ENSCJPG00005000983) #21	PPIB (ENSCJPG00005001015) #22	SNX22 (ENSCJPG00005001034) #23	SNX1 (ENSCJPG00005001045) #24	PATL2 (ENSCJPG00005001062)	B2M (ENSCJPG00005001076)	TERB2 (ENSCJPG00005001084)	RPS17 (ENSCJPG00005001091)	CPEB1 (ENSCJPG00005001127)	AP3B2 (ENSCJPG00005001680)	ENSCJPG00005003644	MYO9A (ENSCJPG00005003674)	ENSCJPG00005007312	SENP8 (ENSCJPG00005007313)	GRAMD2A (ENSCJPG00005007314)	PKM (ENSCJPG00005007315)	PARP6 (ENSCJPG00005007424)
African ostrich	MODERN SPECIES	326	ALPK3 (ENSSCUG00000005181)	ENSSCUG00000005179	ENSSCUG00000005176	ENSSCUG00000005172	ZNF592 (ENSSCUG00000005170)	SEC11A (ENSSCUG00000005169)	ENSSCUG00000005167	ENSSCUG00000005163	DUOX2 (ENSSCUG00000005123)	SORD (ENSSCUG00000005065)	RBPMS2 (ENSSCUG00000005061) #14	OAZ2 (ENSSCUG00000005060) #15	ZNF609 (ENSSCUG00000005059) #17	TRIP4 (ENSSCUG00000005057) #18	CSNK1G1 (ENSSCUG00000005053) #21	PPIB (ENSSCUG00000005051) #22	SNX22 (ENSSCUG00000005049) #23	SNX1 (ENSSCUG00000005039) #24	PATL2 (ENSSCUG00000005031)	B2M (ENSSCUG00000005027)	TERB2 (ENSSCUG00000005025)	RPS17 (ENSSCUG00000005020)	CPEB1 (ENSSCUG00000005018)	AP3B2 (ENSSCUG00000004985)	ENSSCUG00000004952	ENSSCUG00000004949	MYO9A (ENSSCUG00000004859)	SENP8 (ENSSCUG00000004824)	GRAMD2A (ENSSCUG00000004822)	PKM (ENSSCUG00000004819)	ENSSCUG00000004817
Australian saltwater crocodile	MODERN SPECIES	31	ENSCPRG00005005143	ENSCPRG00005005157	DUOX2 (ENSCPRG00005005172)	SORD (ENSCPRG00005005212)	ENSCPRG00005005219	ENSCPRG00005005225	ZNF592 (ENSCPRG00005005233)	ENSCPRG00005005242	RBPMS2 (ENSCPRG00005005245) #14	OAZ2 (ENSCPRG00005005267) #15	ZNF609 (ENSCPRG00005005286) #17	TRIP4 (ENSCPRG00005005311) #18	PCLAF (ENSCPRG00005005348) #19	CSNK1G1 (ENSCPRG00005005359) #21	ENSCPRG00005005369	PPIB (ENSCPRG00005005372) #22	SNX22 (ENSCPRG00005005380) #23	SNX1 (ENSCPRG00005005397) #24	PATL2 (ENSCPRG00005005418)	B2M (ENSCPRG00005005442)	TRIM69 (ENSCPRG00005005457)	TERB2 (ENSCPRG00005005464)	CPEB1 (ENSCPRG00005005487)	AP3B2 (ENSCPRG00005005515)	NR2E3 (ENSCPRG00005005610)	ENSCPRG00005005614	ENSCPRG00005005618	ENSCPRG00005005625	ENSCPRG00005005631	ENSCPRG00005005635	MYO9A (ENSCPRG00005005657)
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d	ENSGT00950000183129.b.b
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT01050000247788	ENSGT00940000156926	ENSGT00940000154905.h	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d
Emydidae	ANCESTRAL SPECIES	38	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT01050000247788	ENSGT00940000156926	ENSGT00940000154905.h	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d
painted turtle	MODERN SPECIES	1	ENSCPBG00000005948	ZNF592 (ENSCPBG00000005959)	SEC11A (ENSCPBG00000005970)	ENSCPBG00000005973	ENSCPBG00000005978	DUOX2 (ENSCPBG00000005987)	ENSCPBG00000006035	SORD (ENSCPBG00000006039)	RBPMS2 (ENSCPBG00000006048) #14	ENSCPBG00000006062	OAZ2 (ENSCPBG00000006067) #15	ZNF609 (ENSCPBG00000006076) #17	TRIP4 (ENSCPBG00000006093) #18	CSNK1G1 (ENSCPBG00000006107) #21	ENSCPBG00000006120	PPIB (ENSCPBG00000006124) #22	SNX22 (ENSCPBG00000006131) #23	SNX1 (ENSCPBG00000006140) #24	ENSCPBG00000006146	PATL2 (ENSCPBG00000006150)	B2M (ENSCPBG00000006165)	ENSCPBG00000006168	TERB2 (ENSCPBG00000006173)	RPS17 (ENSCPBG00000006188)	CPEB1 (ENSCPBG00000006202)	AP3B2 (ENSCPBG00000006215)	NR2E3 (ENSCPBG00000006244)	MYO9A (ENSCPBG00000006272)	SENP8 (ENSCPBG00000006323)	GRAMD2A (ENSCPBG00000006327)	PKM (ENSCPBG00000006337)
Three-toed box turtle	MODERN SPECIES	27	ENSTMTG00000016728	ENSTMTG00000016702	ZNF592 (ENSTMTG00000016677)	SEC11A (ENSTMTG00000016664)	ENSTMTG00000016650	ENSTMTG00000016638	ENSTMTG00000016576	DUOX2 (ENSTMTG00000016323)	SORD (ENSTMTG00000016286)	RBPMS2 (ENSTMTG00000016246) #14	OAZ2 (ENSTMTG00000016229) #15	ZNF609 (ENSTMTG00000016202) #17	TRIP4 (ENSTMTG00000016161) #18	PCLAF (ENSTMTG00000016140) #19	CSNK1G1 (ENSTMTG00000016090) #21	PPIB (ENSTMTG00000016076) #22	SNX22 (ENSTMTG00000016052) #23	SNX1 (ENSTMTG00000016024) #24	PATL2 (ENSTMTG00000015996)	B2M (ENSTMTG00000015984)	TRIM69 (ENSTMTG00000015954)	TERB2 (ENSTMTG00000015911)	RPS17 (ENSTMTG00000015889)	CPEB1 (ENSTMTG00000015677)	ENSTMTG00000015629	ENSTMTG00000015613	ENSTMTG00000015603	NR2E3 (ENSTMTG00000015576)	MYO9A (ENSTMTG00000013663)	SENP8 (ENSTMTG00000013528)	GRAMD2A (ENSTMTG00000013518)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000158534.d	ENSGT00390000018044.a	ENSGT00940000158357	ENSGT00390000015600.c.a	ENSGT00940000154470.b	ENSGT00390000008240.l	ENSGT00390000008240.k	ENSGT00940000160291	ENSGT00550000074781	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00390000006548.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT01050000247788	ENSGT00940000156926	ENSGT00940000154905.h	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d
Goode s thornscrub tortoise	MODERN SPECIES	1	ENSGEVG00005015083	ENSGEVG00005015136	ZNF592 (ENSGEVG00005015174)	SEC11A (ENSGEVG00005015197)	ENSGEVG00005015220	ENSGEVG00005015254	ENSGEVG00005015304	DUOX2 (ENSGEVG00005015380)	SORD (ENSGEVG00005015601)	RBPMS2 (ENSGEVG00005015626) #14	OAZ2 (ENSGEVG00005015669) #15	ZNF609 (ENSGEVG00005015702) #17	TRIP4 (ENSGEVG00005015722) #18	PCLAF (ENSGEVG00005015756) #19	CSNK1G1 (ENSGEVG00005015781) #21	PPIB (ENSGEVG00005015831) #22	SNX22 (ENSGEVG00005015851) #23	SNX1 (ENSGEVG00005015924) #24	PATL2 (ENSGEVG00005015967)	B2M (ENSGEVG00005016002)	TRIM69 (ENSGEVG00005016021)	TERB2 (ENSGEVG00005016042)	ENSGEVG00005016096	ENSGEVG00005016221	CPEB1 (ENSGEVG00005016309)	AP3B2 (ENSGEVG00005016591)	ENSGEVG00005016719	ENSGEVG00005016906	ENSGEVG00005016947	NR2E3 (ENSGEVG00005016980)	MYO9A (ENSGEVG00005017160)
Abingdon island giant tortoise	MODERN SPECIES	1599										RBPMS2 (ENSCABG00000021579) #14	OAZ2 (ENSCABG00000021577) #15	ZNF609 (ENSCABG00000021576) #17	TRIP4 (ENSCABG00000021575) #18	PCLAF (ENSCABG00000021573) #19	CSNK1G1 (ENSCABG00000021559) #21	PPIB (ENSCABG00000021557) #22	SNX1 (ENSCABG00000021554) #24	PATL2 (ENSCABG00000021552)	B2M (ENSCABG00000021550)	TRIM69 (ENSCABG00000021548)	TERB2 (ENSCABG00000021545)	RPS17 (ENSCABG00000021535)	CPEB1 (ENSCABG00000021531)	AP3B2 (ENSCABG00000021428)	ENSCABG00000021381	ENSCABG00000021379	NR2E3 (ENSCABG00000021376)	MYO9A (ENSCABG00000021370)	SENP8 (ENSCABG00000021368)
Chinese turtle	MODERN SPECIES	1436	ENSPSIG00000017784	ALPK3 (ENSPSIG00000017667)	ENSPSIG00000017520	ZNF592 (ENSPSIG00000017509)	SEC11A (ENSPSIG00000017436)	ENSPSIG00000017189	ENSPSIG00000016935	DUOX2 (ENSPSIG00000015528)	ENSPSIG00000001497	SORD (ENSPSIG00000013592)	RBPMS2 (ENSPSIG00000013115) #14	OAZ2 (ENSPSIG00000012912) #15	ZNF609 (ENSPSIG00000012633) #17	TRIP4 (ENSPSIG00000012082) #18	CSNK1G1 (ENSPSIG00000009861) #21	PPIB (ENSPSIG00000009579) #22	SNX1 (ENSPSIG00000007142) #24	PATL2 (ENSPSIG00000017690)	B2M (ENSPSIG00000017643)	TRIM69 (ENSPSIG00000017564)	TERB2 (ENSPSIG00000017433)	RPS17 (ENSPSIG00000017041)	CPEB1 (ENSPSIG00000016717)
Lepidosauria	ANCESTRAL SPECIES	43	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00940000164099.a.b	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000165013	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00940000163963	ENSGT00390000008240.k	ENSGT00950000184218	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d
tuatara	MODERN SPECIES	240																PPIB (ENSSPUG00000000031) #22	SNX22 (ENSSPUG00000019080) #23	SNX1 (ENSSPUG00000019071) #24	PATL2 (ENSSPUG00000019065)	B2M (ENSSPUG00000019061)
Episquamata	ANCESTRAL SPECIES	9	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00940000164099.a.b	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00940000163963	ENSGT00390000008240.k	ENSGT00950000184218	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d	ENSGT00390000016025.b.e
Toxicofera	ANCESTRAL SPECIES	15	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00940000163963	ENSGT00390000008240.k	ENSGT00950000184218	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d	ENSGT00390000016025.b.e
Elapidae	ANCESTRAL SPECIES	12	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00950000182812.F.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628.c #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.k	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d	ENSGT00390000016025.b.e	ENSGT00940000159452	ENSGT00950000183129.b.b
Elapidae_a	ANCESTRAL SPECIES	17	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00950000182812.F.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b.c #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628.c #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.k	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d	ENSGT00390000016025.b.e	ENSGT00940000159452	ENSGT00950000183129.b.b
Acanthophiinae	ANCESTRAL SPECIES	17	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00390000006548.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b.c #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628.c #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.k	ENSGT00950000184218	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d	ENSGT00390000016025.b.e	ENSGT00940000159452
Mainland tiger snake	MODERN SPECIES	217	SENP8 (ENSNSUG00000019465)	MYO9A (ENSNSUG00000019466)	NR2E3 (ENSNSUG00000019470)	AP3B2 (ENSNSUG00000019482)	CPEB1 (ENSNSUG00000019483)	RPS17 (ENSNSUG00000019484)	ENSNSUG00000019488	ENSNSUG00000019489	RBPMS2 (ENSNSUG00000019490) #14	OAZ2 (ENSNSUG00000019491) #15	ZNF609 (ENSNSUG00000019492) #17	TRIP4 (ENSNSUG00000019493) #18	ENSNSUG00000019494	ENSNSUG00000019495 #21	ENSNSUG00000019496 #21	PPIB (ENSNSUG00000019497) #22	SNX22 (ENSNSUG00000019498) #23	SNX1 (ENSNSUG00000019499) #24	PATL2 (ENSNSUG00000019500)	B2M (ENSNSUG00000019502)	TRIM69 (ENSNSUG00000019503)	TERB2 (ENSNSUG00000019504)	SORD (ENSNSUG00000019505)	DUOX2 (ENSNSUG00000019506)
Eastern brown snake	MODERN SPECIES	44	ATOSA (ENSPTXG00000013227)	PKM (ENSPTXG00000013229)	GRAMD2A (ENSPTXG00000013230)	SENP8 (ENSPTXG00000013232)	MYO9A (ENSPTXG00000013233)	NR2E3 (ENSPTXG00000013235)	AP3B2 (ENSPTXG00000013253)	CPEB1 (ENSPTXG00000013254)	RPS17 (ENSPTXG00000013255)	RBPMS2 (ENSPTXG00000013260) #14	OAZ2 (ENSPTXG00000013261) #15	ZNF609 (ENSPTXG00000013262) #17	TRIP4 (ENSPTXG00000013263) #18	PCLAF (ENSPTXG00000013264) #19	CSNK1G1 (ENSPTXG00000013265) #21	PPIB (ENSPTXG00000013266) #22	SNX22 (ENSPTXG00000013267) #23	SNX1 (ENSPTXG00000013269) #24	PATL2 (ENSPTXG00000013270)	B2M (ENSPTXG00000013271)	TRIM69 (ENSPTXG00000013272)	TERB2 (ENSPTXG00000013273)	SORD (ENSPTXG00000013274)	DUOX2 (ENSPTXG00000013277)	ENSPTXG00000013300	SEC11A (ENSPTXG00000013301)	ZNF592 (ENSPTXG00000013302)	ENSPTXG00000013303	ENSPTXG00000013304	SHF (ENSPTXG00000013309)	PARP6 (ENSPTXG00000013310)
Blue-lipped sea krait	MODERN SPECIES	8490															CSNK1G1 (ENSLLTG00000017231) #21	PPIB (ENSLLTG00000017239) #22	SNX22 (ENSLLTG00000017245) #23	SNX1 (ENSLLTG00000017253) #24	ENSLLTG00000017260
Indian cobra	MODERN SPECIES	14	ENSNNAG00000016953	MYO9A (ENSNNAG00000016912)	NR2E3 (ENSNNAG00000016855)	AP3B2 (ENSNNAG00000012594)	CPEB1 (ENSNNAG00000012215)	ENSNNAG00000012149	RPS17 (ENSNNAG00000012013)	ENSNNAG00000011992	ENSNNAG00000011963	RBPMS2 (ENSNNAG00000011929) #14	ENSNNAG00000011856 #15	ZNF609 (ENSNNAG00000011817) #17	TRIP4 (ENSNNAG00000011799) #18	PCLAF (ENSNNAG00000011779) #19	CSNK1G1 (ENSNNAG00000011705) #21	PPIB (ENSNNAG00000011686) #22	SNX22 (ENSNNAG00000011655) #23	SNX1 (ENSNNAG00000011615) #24	ENSNNAG00000011594	PATL2 (ENSNNAG00000011560)	B2M (ENSNNAG00000011542)	TRIM69 (ENSNNAG00000011510)	TERB2 (ENSNNAG00000011469)	SORD (ENSNNAG00000011414)	DUOX2 (ENSNNAG00000011048)	ENSNNAG00000010995	SEC11A (ENSNNAG00000010878)	ZNF592 (ENSNNAG00000010670)	ENSNNAG00000010610	ENSNNAG00000010498	ENSNNAG00000010451
Lizard	MODERN SPECIES	1102											oaz2 (ENSACAG00000034880) #15	ZNF609 (ENSACAG00000007125) #17	TRIP4 (ENSACAG00000007077) #18	PCLAF (ENSACAG00000028782) #19	CSNK1G1 (ENSACAG00000006991) #21	PPIB (ENSACAG00000006969) #22	ENSACAG00000006968	ENSACAG00000006951	ENSACAG00000006791 #24	ENSACAG00000006778 #23	ENSACAG00000006770	TRIM69 (ENSACAG00000006744)	TERB2 (ENSACAG00000043395)	SORD (ENSACAG00000006710)	ENSACAG00000037068	ENSACAG00000036454	ENSACAG00000006617	ENSACAG00000006554	ENSACAG00000006476	ENSACAG00000006448	ENSACAG00000036625
Laterata	ANCESTRAL SPECIES	16	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817	ENSGT00940000155524	ENSGT00940000164099.a.b	ENSGT00390000006548.b	ENSGT00950000182812.F.b	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.k	ENSGT00950000184218	ENSGT00390000015600.c.a	ENSGT00940000158357	ENSGT00940000158534.d	ENSGT00390000016025.b.e	ENSGT00390000016025.b.f
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000008938	ENSPMRG00000008945	SLC45A1 (ENSPMRG00000008956)	MRPS16 (ENSPMRG00000008985)	ENSPMRG00000008999	ENSPMRG00000009008	TNFRSF1B (ENSPMRG00000009019)	ENSPMRG00000009027	VPS13D (ENSPMRG00000009081)	DHRS3 (ENSPMRG00000009131)	ENSPMRG00000009140	ENSPMRG00000009148	LMAN2L (ENSPMRG00000009159)	ENSPMRG00000009170	NEURL3 (ENSPMRG00000009209)	PPIB (ENSPMRG00000009215) #22	ARID5A (ENSPMRG00000009227)	ENSPMRG00000009262	ENSPMRG00000009305	ENSPMRG00000009320	ENSPMRG00000009339	NCAPH (ENSPMRG00000009349)	ENSPMRG00000009365	ITPRIPL1 (ENSPMRG00000009367)	PROM2 (ENSPMRG00000009378)	ENSPMRG00000009389	KCNIP3 (ENSPMRG00000009399)	FAHD2A (ENSPMRG00000009407)	GPAT2 (ENSPMRG00000009418)	ADRA2B (ENSPMRG00000009430)	ENSPMRG00000009432
Argentine black and white tegu	MODERN SPECIES	199								ENSSMRG00000001759	RBPMS2 (ENSSMRG00000001757) #14	ENSSMRG00000001754	OAZ2 (ENSSMRG00000001747) #15	ZNF609 (ENSSMRG00000001734) #17	TRIP4 (ENSSMRG00000001282) #18	PCLAF (ENSSMRG00000001275) #19	CSNK1G1 (ENSSMRG00000001256) #21	PPIB (ENSSMRG00000001246) #22	SNX22 (ENSSMRG00000001245) #23	SNX1 (ENSSMRG00000001242) #24	PATL2 (ENSSMRG00000001235)	B2M (ENSSMRG00000001232)	TRIM69 (ENSSMRG00000001219)	TERB2 (ENSSMRG00000001214)	SORD (ENSSMRG00000001205)
Anura	ANCESTRAL SPECIES	5	ENSGT00390000016075	ENSGT00940000156476	ENSGT00940000157689	ENSGT00950000182938.b.b.b.b.a	ENSGT00940000167848	ENSGT00940000157431	ENSGT00950000183037.A.a	ENSGT00390000016435	ENSGT00940000160359	ENSGT00930000151452	ENSGT00940000156052	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00510000048252 #19	ENSGT00940000155628 #21	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00390000006548.b	ENSGT00940000164099.a.b	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000157725 #15	ENSGT00940000158086 #14	ENSGT00390000012336	ENSGT00940000157577	ENSGT00440000038107	ENSGT00940000165891	ENSGT00390000002672	ENSGT00530000069184	ENSGT00390000015516
Leishan spiny toad	MODERN SPECIES	6	MPI (ENSLLEG00000018554)	ENSLLEG00000018516	ENSLLEG00000018322	ENSLLEG00000018237	ULK3 (ENSLLEG00000017863)	CPLX3 (ENSLLEG00000017811)	ENSLLEG00000017661	ENSLLEG00000017600	CSK (ENSLLEG00000017228)	ENSLLEG00000017186	ARID3B (ENSLLEG00000016712)	ZNF609 (ENSLLEG00000016587) #17	PCLAF (ENSLLEG00000016532) #19	TRIP4 (ENSLLEG00000016185) #18	CSNK1G1 (ENSLLEG00000015498) #21	PPIB (ENSLLEG00000015266) #22	SNX1 (ENSLLEG00000015027) #24	RPS17 (ENSLLEG00000014831)	ENSLLEG00000014807	CPEB1 (ENSLLEG00000014479)	AP3B2 (ENSLLEG00000013971)	ENSLLEG00000013938	OAZ2 (ENSLLEG00000013892) #15	RBPMS2 (ENSLLEG00000013644) #14	ENSLLEG00000013602	ENSLLEG00000013579	ENSLLEG00000013558	TERB2 (ENSLLEG00000013488)	ENSLLEG00000013458	ENSLLEG00000013436	SCAMP5 (ENSLLEG00000027475)
Frog	MODERN SPECIES	3	ulk3 (ENSXETG00000021133)	lman1l (ENSXETG00000021134)	cplx3 (ENSXETG00000021136)	csk (ENSXETG00000021139)	ENSXETG00000045847	cyp1a1 (ENSXETG00000021140)	edc3 (ENSXETG00000010622)	clk3 (ENSXETG00000010623)	ENSXETG00000040363	arid3b (ENSXETG00000010647)	ENSXETG00000045917	znf609 (ENSXETG00000010648) #17	trip4 (ENSXETG00000010649) #18	pclaf (ENSXETG00000027460) #19	csnk1g1 (ENSXETG00000010650) #21	ppib (ENSXETG00000043380) #22	snx22 (ENSXETG00000010652) #23	snx1 (ENSXETG00000010653) #24	rps17 (ENSXETG00000010656)	ENSXETG00000041936	terb2 (ENSXETG00000036296)	cpeb1 (ENSXETG00000010660)	ap3b2 (ENSXETG00000010662)	ENSXETG00000041700	oaz2 (ENSXETG00000010666) #15	rbpms2 (ENSXETG00000037318) #14	scamp5.2 (ENSXETG00000010669)	ppcdc (ENSXETG00000010670)	c15orf39 (ENSXETG00000035954)	ENSXETG00000038733	ENSXETG00000036214
Coelacanth	MODERN SPECIES	417						RBPMS2 (ENSLACG00000016999) #14	AP3B2 (ENSLACG00000016681)	CPEB1 (ENSLACG00000016523)	ENSLACG00000016393	ENSLACG00000016328	RPS17 (ENSLACG00000016288)	SNX1 (ENSLACG00000015898) #24	ENSLACG00000015673 #23	PCLAF (ENSLACG00000015625) #19	CSNK1G1 (ENSLACG00000015103) #21	ENSLACG00000015009 #22	TRIP4 (ENSLACG00000014856) #18	CLK3 (ENSLACG00000014706)	EDC3 (ENSLACG00000014149)	cyp1a (ENSLACG00000014013)	ENSLACG00000012489	CSK (ENSLACG00000007735)	ENSLACG00000022595	CPLX3 (ENSLACG00000005852)	ENSLACG00000005095	ULK3 (ENSLACG00000001690)	SCAMP2 (ENSLACG00000001001)
Actinopterygii	ANCESTRAL SPECIES	201		ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00940000164099.a.b	ENSGT00390000006548.a.b.a.a	ENSGT00940000155628 #21	ENSGT00510000048252 #19	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00950000182940.a	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000158086 #14	ENSGT00940000157725 #15
Reedfish	MODERN SPECIES	8	tpma (ENSECRG00000020957) #35	tln2a (ENSECRG00000020823) #37	adpgk (ENSECRG00000020757)	bbs4 (ENSECRG00000020733)	arih1 (ENSECRG00000020706)	nr2e3 (ENSECRG00000020622)	ENSECRG00000020599	myo9aa (ENSECRG00000020382)	senp8 (ENSECRG00000020323)	znf609a (ENSECRG00000020289) #17	trip4 (ENSECRG00000020251) #18	ENSECRG00000020214	ENSECRG00000020166	csnk1g1 (ENSECRG00000019804) #21	PCLAF (ENSECRG00000019739) #19	ppib (ENSECRG00000019696) #22	ENSECRG00000019664 #23	PEAK1 (ENSECRG00000019637)	hmg20a (ENSECRG00000019610)	calml4a (ENSECRG00000019589)	PIAS1 (ENSECRG00000019551)	ENSECRG00000019525	ENSECRG00000019494	map2k5 (ENSECRG00000019409)	zgc:162898 (ENSECRG00000019374)	iqch (ENSECRG00000019116)	aagab (ENSECRG00000019047)	smad3b (ENSECRG00000018886)	smad6a (ENSECRG00000018835)	snapc5 (ENSECRG00000018817)	crybgx (ENSECRG00000018775)
Neopterygii	ANCESTRAL SPECIES	118		ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008748.b #17	ENSGT00390000005300 #18	ENSGT00940000164099.a.b	ENSGT00390000006548.a.b.b	ENSGT00940000155628 #21	ENSGT00510000048252 #19	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889 #24	ENSGT00950000182940.a	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000158086 #14	ENSGT00940000157725 #15	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399	ENSGT00940000153533.a	ENSGT00940000159422	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494
Spotted gar	MODERN SPECIES	669	scamp2 (ENSLOCG00000014941)	bbs4 (ENSLOCG00000014945)	adpgk (ENSLOCG00000014950)	neo1a (ENSLOCG00000014953)	arih1 (ENSLOCG00000014970)	hexa (ENSLOCG00000014972)	nr2e3 (ENSLOCG00000014973)	myo9aa (ENSLOCG00000014977)	senp8 (ENSLOCG00000017960)	GRAMD2A (ENSLOCG00000014988)	znf609a (ENSLOCG00000014990) #17	trip4 (ENSLOCG00000014993) #18	ENSLOCG00000014994	zgc:114188 (ENSLOCG00000014995)	csnk1g1 (ENSLOCG00000014997) #21	ppib (ENSLOCG00000015000) #22	snx22 (ENSLOCG00000015001) #23	snx1a (ENSLOCG00000015004) #24	ENSLOCG00000015007	cpeb1b (ENSLOCG00000015009)	AP3B2 (ENSLOCG00000015010)	rbpms2b (ENSLOCG00000015018) #14	oaz2b (ENSLOCG00000015021) #15	psma4 (ENSLOCG00000015026)	IREB2 (ENSLOCG00000015029)	slc25a44b (ENSLOCG00000015045)	skic8 (ENSLOCG00000015047)	crabp1b (ENSLOCG00000015050)	sin3aa (ENSLOCG00000015051)	PTPN9 (ENSLOCG00000015058)	snupn (ENSLOCG00000015064)
Osteoglossocephalai	ANCESTRAL SPECIES	59													ENSGT00390000006548.a.b.b	ENSGT00940000155628 #21	ENSGT00510000048252 #19	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524	ENSGT00940000156817	ENSGT00940000158086.a.b #14	ENSGT00940000158086.b #14	ENSGT00940000157725 #15	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	168				ENSGT00390000006548.a.b.a.a	ENSGT00940000158166	ENSGT00390000017953.A	ENSGT00940000156684.cb.b.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00940000176053	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000159572.a.b	ENSGT00940000155628.fb #21	ENSGT00510000048252 #19	ENSGT00940000158007.a #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524	ENSGT00940000156817.d	ENSGT00940000158086.a.a #14	ENSGT00940000156817.c	ENSGT00940000158086.a.b #14	ENSGT00940000157725 #15	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c.k
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015021255	RASSF10 (ENSSFOG00015021268)	RPS17 (ENSSFOG00015021280)	bbs4 (ENSSFOG00015021331)	adpgk (ENSSFOG00015021349)	NEO1 (ENSSFOG00015021378)	scamp2 (ENSSFOG00015031918)	mpi (ENSSFOG00015021429)	ENSSFOG00015021447	ENSSFOG00015031413	ENSSFOG00015025698	myo9ab (ENSSFOG00015021528)	ENSSFOG00015021799	csnk1g1 (ENSSFOG00015021840) #21	PCLAF (ENSSFOG00015021909) #19	ppib (ENSSFOG00015021922) #22	snx22 (ENSSFOG00015021932) #23	ENSSFOG00015021957	snx1a (ENSSFOG00015032099) #24	ENSSFOG00015021969	cpeb1b (ENSSFOG00015021985)	AP3B2 (ENSSFOG00015022019)	RBPMS2 (ENSSFOG00015022055) #14	ENSSFOG00015031040 #15	IREB2 (ENSSFOG00015022085)	slc25a44b (ENSSFOG00015022113)	skic8 (ENSSFOG00015022123)	CRABP1 (ENSSFOG00015029622)	sin3aa (ENSSFOG00015022162)	PTPN9 (ENSSFOG00015022236)	snupn (ENSSFOG00015022264)
P. kingsleyae	MODERN SPECIES	327					ENSPKIG00000023717	ENSPKIG00000023689	ENSPKIG00000023671	ANO5 (ENSPKIG00000023635)	scamp2 (ENSPKIG00000023594)	mpi (ENSPKIG00000023570)	ENSPKIG00000023552	myo9ab (ENSPKIG00000023503)	ENSPKIG00000023467	csnk1g1 (ENSPKIG00000023430) #21	ENSPKIG00000023409 #19	ppib (ENSPKIG00000023392) #22	snx22 (ENSPKIG00000023378) #23	snx1a (ENSPKIG00000023348) #24	cpeb1b (ENSPKIG00000023302)	AP3B2 (ENSPKIG00000023240)	RASSF10 (ENSPKIG00000023218)	zgc:114188 (ENSPKIG00000023193)	bbs4 (ENSPKIG00000023177)	adpgk (ENSPKIG00000023154)	ENSPKIG00000023147	NEO1 (ENSPKIG00000023118)	MICAL2 (ENSPKIG00000023089)	ENSPKIG00000023044	znf609b (ENSPKIG00000023012) #17	trip4 (ENSPKIG00000022978) #18
Osteoglossiformes	ANCESTRAL SPECIES	546														ENSGT00390000006548.a.b.b	ENSGT00940000155628.gb #21	ENSGT00940000158007.b #22	ENSGT00940000180054
P. kingsleyae	MODERN SPECIES	12														NEO1 (ENSPKIG00000012006)	ENSPKIG00000012094 #21	ppib (ENSPKIG00000012221) #22	ENSPKIG00000012239	SNX1 (ENSPKIG00000012253) #24	CPEB1 (ENSPKIG00000012302)	AP3B2 (ENSPKIG00000012434)	rbpms2b (ENSPKIG00000012634) #14	OAZ2 (ENSPKIG00000012684) #15	psma4 (ENSPKIG00000012736)	CRABP1 (ENSPKIG00000012775)	sin3aa (ENSPKIG00000012808)	snx33 (ENSPKIG00000012874)	lingo1b (ENSPKIG00000012885)	ENSPKIG00000012888	kcnq1.1 (ENSPKIG00000012902)	cdkn1ca (ENSPKIG00000012930)	trpm5 (ENSPKIG00000012994)
Asian bonytongue	MODERN SPECIES	2	itga11a (ENSSFOG00015009348)	ENSSFOG00015009558	ENSSFOG00015027576	ADAMTS7 (ENSSFOG00015009600)	ENSSFOG00015026980	ENSSFOG00015030295	chrna7a (ENSSFOG00015022934)	ZNF609 (ENSSFOG00015009707) #17	GRAMD2A (ENSSFOG00015032291)	senp8 (ENSSFOG00015009743)	MYO9A (ENSSFOG00015009782)	SCAMP2 (ENSSFOG00015009946)	neo1a (ENSSFOG00015010033)	RPS17 (ENSSFOG00015027143)	CSNK1G1 (ENSSFOG00015010155) #21	ppib (ENSSFOG00015010226) #22	ENSSFOG00015010247	CPEB1 (ENSSFOG00015010287)	AP3B2 (ENSSFOG00015010369)	rbpms2b (ENSSFOG00015010476) #14	OAZ2 (ENSSFOG00015010507) #15	psma4 (ENSSFOG00015010581)	crabp1a (ENSSFOG00015010613)	sin3aa (ENSSFOG00015010655)	snx33 (ENSSFOG00015010748)	lingo1b (ENSSFOG00015010766)	ENSSFOG00015027106	ENSSFOG00015010788	cdkn1ca (ENSSFOG00015024372)	trpm5 (ENSSFOG00015010837)	FCSK (ENSSFOG00015010882)
Clupeocephala	ANCESTRAL SPECIES	166				ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b #17	ENSGT00390000005300 #18	ENSGT00940000154617.B.c	ENSGT00940000159819	ENSGT01030000234518.B.a.b.a.a	ENSGT00390000006548.a.a	ENSGT00940000155628 #21	ENSGT00510000048252 #19	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494
Otomorpha	ANCESTRAL SPECIES	210													ENSGT00390000006548.a.a	ENSGT00940000155628 #21	ENSGT00510000048252 #19	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000158086.a.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447
Otophysi	ANCESTRAL SPECIES	169						ENSGT00940000160061	ENSGT00950000183194.a.a	ENSGT00950000183194.b	ENSGT00390000006791	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00940000157810	ENSGT00940000158319	ENSGT00940000177234	ENSGT00940000157255.c.a	ENSGT00950000182976.a.b.c	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494
Characiphysae	ANCESTRAL SPECIES	63			ENSGT00410000028333	ENSGT00940000162662.y	ENSGT00940000159961	ENSGT00940000160061	ENSGT00950000183194.a.a	ENSGT00950000183194.b	ENSGT00390000006791	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00940000157810	ENSGT00940000158319	ENSGT00940000177234	ENSGT00940000157255.c.a	ENSGT00950000182976.a.b.c	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000165330	ENSGT00440000033504.A	ENSGT00390000018587.f	ENSGT00390000010089	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000158086.a.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b
Channel catfish	MODERN SPECIES	5	ENSIPUG00000012518	ENSIPUG00000012544	DEPDC7 (ENSIPUG00000012693)	NUAK1 (ENSIPUG00000012794)	appl2 (ENSIPUG00000012828)	tubgcp6 (ENSIPUG00000012929)	dnaaf1 (ENSIPUG00000012982)	plxnb2b (ENSIPUG00000013000)	SHISAL1 (ENSIPUG00000013104)	parvg (ENSIPUG00000013120)	parvb (ENSIPUG00000013176)	hdac10 (ENSIPUG00000013207)	ENSIPUG00000013248	ENSIPUG00000013439	ENSIPUG00000013454	ppib (ENSIPUG00000013480) #22	snx22 (ENSIPUG00000013513) #23	snx1a (ENSIPUG00000013546) #24	cpeb1a (ENSIPUG00000013576)	cracr2b (ENSIPUG00000013598)	tmem138 (ENSIPUG00000013636)	tmem258 (ENSIPUG00000013660)	AP3B2 (ENSIPUG00000013722)	ENSIPUG00000014022	RBPMS (ENSIPUG00000014032) #14	OAZ2 (ENSIPUG00000014100) #15	psma4 (ENSIPUG00000014113)	syt12 (ENSIPUG00000014144)	prc1a (ENSIPUG00000014182)	ENSIPUG00000014246	peak1 (ENSIPUG00000014281)
Characiphysae_b	ANCESTRAL SPECIES	31							ENSGT00940000160061	ENSGT00950000183194.a.a	ENSGT00950000183194.b	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00940000157810	ENSGT00940000158319	ENSGT00940000177234	ENSGT00940000157255.c.a	ENSGT00950000182976.a.b.c	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000165330	ENSGT00440000033504.A	ENSGT00390000018587.f	ENSGT00390000010089	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a
Electric eel	MODERN SPECIES	4									CMAS (ENSEEEG00000017750)	plxnb2b (ENSEEEG00000017758)	TUBGCP6 (ENSEEEG00000017770)	appl2 (ENSEEEG00000017909)	ENSEEEG00000017911	NUAK1 (ENSEEEG00000017913)	DEPDC7 (ENSEEEG00000017918)	ppib (ENSEEEG00000017919) #22	snx22 (ENSEEEG00000017924) #23	snx1a (ENSEEEG00000017926) #24	ENSEEEG00000017938	cpeb1a (ENSEEEG00000017941)	cracr2b (ENSEEEG00000017943)	tmem138 (ENSEEEG00000017946)	tmem258 (ENSEEEG00000017951)	AP3B2 (ENSEEEG00000017952)	RBPMS2 (ENSEEEG00000017955) #14	OAZ2 (ENSEEEG00000017961) #15	psma4 (ENSEEEG00000017962)	IREB2 (ENSEEEG00000017974)	slc25a44a (ENSEEEG00000018340)	skic8 (ENSEEEG00000018343)	crabp1a (ENSEEEG00000018474)
Characoidei	ANCESTRAL SPECIES	65	ENSGT00940000155040.a	ENSGT00950000182990.a.a.a.b	ENSGT00940000160990.h	ENSGT00940000153899.a.b	ENSGT00530000063626.a	ENSGT00940000162662.y	ENSGT00940000160061	ENSGT00950000183194.a.a	ENSGT00950000183194.b	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00940000157810	ENSGT00940000158319	ENSGT00940000177234	ENSGT00940000157255.c.a	ENSGT00950000182976.a.b.c	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00980000200651	ENSGT00440000033504.A	ENSGT00390000018587.f	ENSGT00390000010089	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a
Red-bellied piranha	MODERN SPECIES	122	MYRF (ENSPNAG00000029746)	ENSPNAG00000029708	ENSPNAG00000029598	ENSPNAG00000029212	hdac10 (ENSPNAG00000004519)	parvb (ENSPNAG00000005696)	parvg (ENSPNAG00000004483)	SHISAL1 (ENSPNAG00000028986)	nansb (ENSPNAG00000028960)	plxnb2b (ENSPNAG00000005433)	TUBGCP6 (ENSPNAG00000028835)	appl2 (ENSPNAG00000004305)	ENSPNAG00000027989	NUAK1 (ENSPNAG00000027935)	DEPDC7 (ENSPNAG00000005167)	ppib (ENSPNAG00000027841) #22	snx22 (ENSPNAG00000027856) #23	snx1a (ENSPNAG00000027822) #24	ENSPNAG00000027678	cpeb1a (ENSPNAG00000004246)	ENSPNAG00000027573	ENSPNAG00000027545	cracr2b (ENSPNAG00000027533)	tmem138 (ENSPNAG00000005963)	tmem258 (ENSPNAG00000027466)	AP3B2 (ENSPNAG00000027450)	rbpms2a (ENSPNAG00000027343) #14	OAZ2 (ENSPNAG00000027304) #15	psma4 (ENSPNAG00000027295)	IREB2 (ENSPNAG00000027252)	slc25a44a (ENSPNAG00000027154)
Cyprinoidei	ANCESTRAL SPECIES	42					ENSGT00950000183194.a.a	ENSGT00950000183194.b	ENSGT00940000160061	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00390000006791	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00940000157810	ENSGT00940000158319	ENSGT00610000087444	ENSGT00940000157255.c.a	ENSGT00950000182976.a.b.c	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	57					ENSGT01000000214413.a.w.b	ENSGT00950000182838.C.i	ENSGT00840000129915.a	ENSGT00940000162662.y.e.b	ENSGT00950000183194.a.a.c	ENSGT00950000183194.b.e	ENSGT00390000006791.ab.a.a	ENSGT01020000230394.e.a.a.a.a.a.a	ENSGT00940000158319.f	ENSGT00940000157255.c.a.b	ENSGT00950000182976.a.b.c.c	ENSGT00940000158007.c #22	ENSGT00390000001280.a.d #23	ENSGT00940000155889.d.b #24	ENSGT00950000182940.a.b	ENSGT00940000155524.e.b	ENSGT00940000156817.e	ENSGT00940000158086.a.b #14	ENSGT00940000157725.p.b #15	ENSGT00550000074827.fb.b	ENSGT00940000157796.c	ENSGT00940000155399.b.c	ENSGT00940000153533.a.s.a	ENSGT00940000159422.a.a.b	ENSGT00940000155491.c.g	ENSGT00940000157447.h	ENSGT00510000047494.f
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	17	cpeb1a (ENSCARG00000013683)	AP3B2 (ENSCARG00000012954)	ENSCARG00000012837 #14	OAZ2 (ENSCARG00000012824) #15	psma4 (ENSCARG00000012811)	IREB2 (ENSCARG00000009781)	slc25a44a (ENSCARG00000009688)	skic8 (ENSCARG00000009671)	crabp1a (ENSCARG00000009665)	sin3aa (ENSCARG00000009523)	PTPN9 (ENSCARG00000008897)	snupn (ENSCARG00000008812)	snx33 (ENSCARG00000008799)	CSPG4 (ENSCARG00000008778)	DEPDC7 (ENSCARG00000008767)	ppib (ENSCARG00000008759) #22	snx22 (ENSCARG00000008745) #23	snx1a (ENSCARG00000007888) #24	ENSCARG00000007844	ENSCARG00000007834	ENSCARG00000007828	ENSCARG00000007820	ENSCARG00000007810	ENSCARG00000007803	ENSCARG00000007781	ENSCARG00000007761	ENSCARG00000007754	ENSCARG00000007721	ENSCARG00000007713	septin15 (ENSCARG00000005142)	ENSCARG00000005017
Goldfish	MODERN SPECIES	17	chchd3b (ENSCARG00000015758)	slc35b4 (ENSCARG00000015669)	golt1bb (ENSCARG00000015647)	ENSCARG00000015638	slc25a3b (ENSCARG00000015607)	tmpob (ENSCARG00000015599)	pthlhb (ENSCARG00000015595)	metap2b (ENSCARG00000015575)	cib1 (ENSCARG00000015567)	ENSCARG00000015554	gtf2h1 (ENSCARG00000015524)	plxnb2b (ENSCARG00000014361)	appl2 (ENSCARG00000013817)	NUAK1 (ENSCARG00000013795)	DEPDC7 (ENSCARG00000013792)	ppib (ENSCARG00000013787) #22	snx22 (ENSCARG00000013779) #23	snx1a (ENSCARG00000013725) #24	cpeb1a (ENSCARG00000013683)	AP3B2 (ENSCARG00000012954)	ENSCARG00000012837 #14	OAZ2 (ENSCARG00000012824) #15	psma4 (ENSCARG00000012811)	IREB2 (ENSCARG00000009781)	slc25a44a (ENSCARG00000009688)	skic8 (ENSCARG00000009671)	crabp1a (ENSCARG00000009665)	sin3aa (ENSCARG00000009523)	PTPN9 (ENSCARG00000008897)	snupn (ENSCARG00000008812)	snx33 (ENSCARG00000008799)
Cyprininae_a	ANCESTRAL SPECIES	106												ENSGT01020000230394.e.a.a.a.a.a.a	ENSGT00940000158319.f	ENSGT00940000157255.c.a.b	ENSGT00950000182976.a.b.c.c	ENSGT00940000158007.c #22	ENSGT00390000001280.a.d #23	ENSGT00940000155889.d.b #24	ENSGT00950000182940.a.b	ENSGT00940000155524.e.b	ENSGT00940000156817.e	ENSGT00940000158086.a.b #14	ENSGT00940000157725.p.b #15	ENSGT00550000074827.fb.b	ENSGT00940000157796.c	ENSGT00940000155399.b.c	ENSGT00940000153533.a.s.a	ENSGT00940000159422.a.a.b	ENSGT00940000155491.c.g	ENSGT00940000157447.h	ENSGT00510000047494.f
Golden-line barbel	MODERN SPECIES	705														DEPDC7 (ENSSGRG00000040256)	NUAK1 (ENSSGRG00000040254)	ppib (ENSSGRG00000040226) #22	snx22 (ENSSGRG00000040219) #23	snx1a (ENSSGRG00000038233) #24	ENSSGRG00000038204	cpeb1a (ENSSGRG00000038160)	ENSSGRG00000038159	AP3B2 (ENSSGRG00000036023)	RBPMS2 (ENSSGRG00000035912) #14	OAZ2 (ENSSGRG00000035903) #15	psma4 (ENSSGRG00000035901)	IREB2 (ENSSGRG00000034888)	slc25a44a (ENSSGRG00000034849)	SKIC8 (ENSSGRG00000034724)	crabp1a (ENSSGRG00000034716)	sin3aa (ENSSGRG00000034507)	PTPN9 (ENSSGRG00000033731)
Common carp reference	MODERN SPECIES	37	ENSCCRG00000079258	ENSCCRG00000070553	gnb5a (ENSCCRG00000032711)	ENSCCRG00000054874	ENSCCRG00000033811	ENSCCRG00000056638	ENSCCRG00000060384	parvb (ENSCCRG00000006046)	parvg (ENSCCRG00000034474)	SHISAL1 (ENSCCRG00000057460)	ENSCCRG00000076155	appl2 (ENSCCRG00000068982)	ENSCCRG00000019956	ENSCCRG00000019925	snx22 (ENSCCRG00000059504) #23	ppib (ENSCCRG00000076510) #22	snx1a (ENSCCRG00000002151) #24	ENSCCRG00000081501	cpeb1a (ENSCCRG00000056644)	ENSCCRG00000010515	ENSCCRG00000037495 #14	ENSCCRG00000077568 #15	psma4 (ENSCCRG00000043423)	ENSCCRG00000007163	ENSCCRG00000078484	slc25a44a (ENSCCRG00000052089)	skic8 (ENSCCRG00000037008)	crabp1a (ENSCCRG00000037011)	sin3aa (ENSCCRG00000053554)	PTPN9 (ENSCCRG00000037407)	snupn (ENSCCRG00000006442)
Cyprininae	ANCESTRAL SPECIES	1155																ENSGT00940000158007.d #22	ENSGT00390000001280.a.c #23	ENSGT00940000155889.d.a.b #24
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2591																ppib (ENSCARG00000042274) #22	snx22 (ENSCARG00000042313) #23
Goldfish	MODERN SPECIES	45	ENSCARG00000062074	ptdss2 (ENSCARG00000061996)	cat (ENSCARG00000055884)	prc1a (ENSCARG00000055057)	ENSCARG00000062544	PEAK1 (ENSCARG00000062537)	hmg20a (ENSCARG00000062520)	LINGO1 (ENSCARG00000062515)	psma4 (ENSCARG00000062448)	IREB2 (ENSCARG00000056503)	skic8 (ENSCARG00000056283)	crabp1a (ENSCARG00000056258)	plxnb2b (ENSCARG00000055663)	TUBGCP6 (ENSCARG00000055205)	NUAK1 (ENSCARG00000055150)	ppib (ENSCARG00000055083) #22	snx22 (ENSCARG00000055061) #23	snx1a (ENSCARG00000054465) #24	ENSCARG00000054428	cpeb1a (ENSCARG00000054368)	AP3B2 (ENSCARG00000053133)	RBPMS2 (ENSCARG00000053027) #14	OAZ2 (ENSCARG00000053008) #15	psma4 (ENSCARG00000052955)	IREB2 (ENSCARG00000045789)	ENSCARG00000045520	skic8 (ENSCARG00000045496)	crabp1a (ENSCARG00000045480)	sin3aa (ENSCARG00000045176)	PTPN9 (ENSCARG00000044680)	snupn (ENSCARG00000044612)
Cyprininae_a	ANCESTRAL SPECIES	419																ENSGT00940000158007.d #22	ENSGT00390000001280.a.c #23	ENSGT00940000155889.d.a.b #24	ENSGT00940000155889.d.a.a.b #24	ENSGT00950000182940.a.a	ENSGT00940000155524.e.a.a.a	ENSGT00940000156817.f	ENSGT00940000157725.p.a #15	ENSGT00550000074827.fb.a	ENSGT00940000157796.d	ENSGT00940000155399.b.d	ENSGT00940000153533.a.t	ENSGT00940000159422.a.a.a.d	ENSGT00940000153533.a.s.b	ENSGT00940000159422.a.a.a.c	ENSGT00940000155491.c.h
Common carp reference	MODERN SPECIES	33	parvg (ENSCCRG00000006021)	SHISAL1 (ENSCCRG00000058259)	ENSCCRG00000069210	ENSCCRG00000080257	ENSCCRG00000006179	nansb (ENSCCRG00000054075)	ENSCCRG00000007216	ENSCCRG00000063557	nansb (ENSCCRG00000068942)	ENSCCRG00000082611	plxnb2b (ENSCCRG00000050140)	ENSCCRG00000059301	appl2 (ENSCCRG00000080422)	ENSCCRG00000009501	ENSCCRG00000009185	ppib (ENSCCRG00000070153) #22	snx22 (ENSCCRG00000043408) #23	snx1a (ENSCCRG00000019560) #24	ENSCCRG00000076019	cpeb1a (ENSCCRG00000029457)	ENSCCRG00000029467	ENSCCRG00000029525 #14	ENSCCRG00000061894 #15	psma4 (ENSCCRG00000029445)	ENSCCRG00000043456	slc25a44a (ENSCCRG00000007157)	skic8 (ENSCCRG00000007119)	crabp1a (ENSCCRG00000064457)	sin3aa (ENSCCRG00000065394)	PTPN9 (ENSCCRG00000006514)	snupn (ENSCCRG00000055944)
Golden-line barbel	MODERN SPECIES	3233																ppib (ENSSGRG00000005454) #22	snx22 (ENSSGRG00000005448) #23
Zebrafish	MODERN SPECIES	17	ENSDARG00000097688	hdac10 (ENSDARG00000086458)	parvb (ENSDARG00000019117)	parvg (ENSDARG00000067711)	SHISAL1 (ENSDARG00000067710)	ENSDARG00000089903	nansb (ENSDARG00000101164)	ENSDARG00000076361	plxnb2b (ENSDARG00000036985)	AP3B2 (ENSDARG00000105296)	ENSDARG00000100151	appl2 (ENSDARG00000078139)	ENSDARG00000100152	NUAK1 (ENSDARG00000028676)	DEPDC7 (ENSDARG00000053246)	ppib (ENSDARG00000092798) #22	snx22 (ENSDARG00000053204) #23	snx1a (ENSDARG00000071031) #24	ENSDARG00000091833	cpeb1a (ENSDARG00000045932)	rbpms2a (ENSDARG00000045930) #14	oaz2a (ENSDARG00000045929) #15	psma4 (ENSDARG00000045928)	IREB2 (ENSDARG00000021466)	slc25a44a (ENSDARG00000045927)	skic8 (ENSDARG00000007755)	crabp1a (ENSDARG00000045926)	sin3aa (ENSDARG00000079716)	PTPN9 (ENSDARG00000077495)	snupn (ENSDARG00000008395)	snx33 (ENSDARG00000014954)
Clupeiformes	ANCESTRAL SPECIES	304													ENSGT00390000006548.a.b.a.a	ENSGT00940000155628 #21	ENSGT00510000048252 #19	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.a.b #14	ENSGT00940000157725.p #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494
Denticle herring	MODERN SPECIES	8	ENSDCDG00000020237	ENSDCDG00000020221	znf609a (ENSDCDG00000020211) #17	ENSDCDG00000020204	ENSDCDG00000020193	myo9ab (ENSDCDG00000019804)	ENSDCDG00000019781	mpi (ENSDCDG00000019777)	scamp2 (ENSDCDG00000019774)	NEO1 (ENSDCDG00000009430)	adpgk (ENSDCDG00000008867)	bbs4 (ENSDCDG00000008785)	zgc:114188 (ENSDCDG00000008768)	csnk1g1 (ENSDCDG00000008675) #21	PCLAF (ENSDCDG00000008623) #19	ppib (ENSDCDG00000008617) #22	snx22 (ENSDCDG00000008612) #23	snx1a (ENSDCDG00000007338) #24	ENSDCDG00000007141	cpeb1a (ENSDCDG00000007047)	AP3B2 (ENSDCDG00000005988)	RBPMS2 (ENSDCDG00000005681) #14	OAZ2 (ENSDCDG00000005669) #15	psma4 (ENSDCDG00000035114)	IREB2 (ENSDCDG00000034745)	slc25a44a (ENSDCDG00000034705)	skic8 (ENSDCDG00000034674)	crabp1a (ENSDCDG00000034665)	sin3aa (ENSDCDG00000034515)	PTPN9 (ENSDCDG00000034468)	snupn (ENSDCDG00000034466)
Atlantic herring	MODERN SPECIES	19	cpa1 (ENSCHAG00000021741)	cep41 (ENSCHAG00000022820)	tes (ENSCHAG00000022841)	cav1 (ENSCHAG00000022848)	snupn (ENSCHAG00000022865)	ENSCHAG00000022886	kitlga (ENSCHAG00000022896)	TMTC3 (ENSCHAG00000022921)	cpa4 (ENSCHAG00000023072)	ENSCHAG00000023093 #19	borcs5 (ENSCHAG00000023112)	cep290 (ENSCHAG00000023128)	bbs4 (ENSCHAG00000023279)	zgc:103499 (ENSCHAG00000023444)	adpgk (ENSCHAG00000023448)	ppib (ENSCHAG00000023455) #22	ENSCHAG00000023461 #23	snx1a (ENSCHAG00000023489) #24	IREB2 (ENSCHAG00000024103)	AP3B2 (ENSCHAG00000026176)	skic8 (ENSCHAG00000026754)	ENSCHAG00000026758	ENSCHAG00000026761	ENSCHAG00000026763	rpgrip1l (ENSCHAG00000026769)	irx3b (ENSCHAG00000026789)	ENSCHAG00000026791	irx5b (ENSCHAG00000026795)	ENSCHAG00000026803	ENSCHAG00000000128	amfra (ENSCHAG00000000226)
Euteleosteomorpha	ANCESTRAL SPECIES	179																ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.a.b #14	ENSGT00940000158086.a.a #14	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447
Protacanthopterygii	ANCESTRAL SPECIES	79	ENSGT00390000016791	ENSGT00390000017697.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157859.a.b	ENSGT00940000164138	ENSGT00940000155465.j	ENSGT00940000162591	ENSGT00940000160394.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b	ENSGT00940000159837	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00390000017953.A	ENSGT00940000158166.e	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494
Salmoninae	ANCESTRAL SPECIES	59	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157859.a.b	ENSGT00940000164138.c	ENSGT00940000155465.j	ENSGT00940000162591	ENSGT00390000016223.h.b.b	ENSGT00940000160394.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b.c	ENSGT00940000159837.f.a	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00390000017953.A	ENSGT00940000158166.e	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.r #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447.c	ENSGT00510000047494
Huchen	MODERN SPECIES	125									DGKZ (ENSHHUG00000038797)	PHF21A (ENSHHUG00000038950)	ENSHHUG00000039000	ENSHHUG00000039005	ENSHHUG00000039012	adpgk (ENSHHUG00000039016)	bbs4 (ENSHHUG00000039022)	ppib (ENSHHUG00000039124) #22	snx22 (ENSHHUG00000039252) #23	snx1a (ENSHHUG00000039260) #24	ENSHHUG00000039322	cpeb1a (ENSHHUG00000039353)	AP3B2 (ENSHHUG00000039660)	RBPMS2 (ENSHHUG00000039872) #14	OAZ2 (ENSHHUG00000039977) #15	psma4 (ENSHHUG00000039982)	IREB2 (ENSHHUG00000040162)	slc25a44a (ENSHHUG00000040263)	skic8 (ENSHHUG00000040265)	CRABP1 (ENSHHUG00000040491)	sin3aa (ENSHHUG00000040513)	PTPN9 (ENSHHUG00000040628)	snupn (ENSHHUG00000040665)
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157859.a.b	ENSGT00940000164138.c	ENSGT00940000155465.j	ENSGT00940000162591	ENSGT00390000016223.h.b.b	ENSGT00940000160394.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b.c	ENSGT00940000159837.f.a	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00390000017953.A	ENSGT00940000158166.e	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.r #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447.c	ENSGT00510000047494
Salmo	ANCESTRAL SPECIES	50	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157859.a.b	ENSGT00940000164138.c	ENSGT00940000155465.j	ENSGT00940000158689.u	ENSGT00940000162591	ENSGT00390000016223.h.b.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b.c	ENSGT00940000159837.f.a	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00390000017953.A	ENSGT00940000158166.e	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.a.b #14	ENSGT00940000157725.r #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447.c	ENSGT00510000047494
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000092607	ITGA11 (ENSSSAG00000065857)	ENSSSAG00000120176	ENSSSAG00000116554	nox5 (ENSSSAG00000065405)	ambra1b (ENSSSAG00000065320)	mdkb (ENSSSAG00000065281)	DGKZ (ENSSSAG00000064260)	PHF21A (ENSSSAG00000064151)	ENSSSAG00000090067	ENSSSAG00000106929	ENSSSAG00000064136	kcnj11l (ENSSSAG00000064132)	ENSSSAG00000064126	ENSSSAG00000064081	ppib (ENSSSAG00000064063) #22	snx1a (ENSSSAG00000062746) #24	ENSSSAG00000062675	cpeb1a (ENSSSAG00000061861)	ENSSSAG00000090066	ap3b2 (ENSSSAG00000047335)	ENSSSAG00000047069 #14	ENSSSAG00000088502	ENSSSAG00000047059 #15	psma4 (ENSSSAG00000046820)	ENSSSAG00000045952	slc25a44a (ENSSSAG00000083673)	skic8 (ENSSSAG00000045654)	crabp1a (ENSSSAG00000045612)	sin3aa (ENSSSAG00000044150)	ptpn9 (ENSSSAG00000043735)
River trout	MODERN SPECIES	37	ciao2a (ENSSTUG00000028104) #25	ENSSTUG00000028120	CALML4 (ENSSTUG00000028126)	CLN6 (ENSSTUG00000028135)	ENSSTUG00000028155	ITGA11 (ENSSTUG00000028229)	CORO2B (ENSSTUG00000029624)	NOX5 (ENSSTUG00000029752)	ambra1b (ENSSTUG00000029908)	mdkb (ENSSTUG00000030316)	DGKZ (ENSSTUG00000030390)	PHF21A (ENSSTUG00000031733)	ENSSTUG00000031873	ENSSTUG00000031883	ENSSTUG00000031892	ppib (ENSSTUG00000031898) #22	bbs4 (ENSSTUG00000031977)	snx22 (ENSSTUG00000032321) #23	snx1a (ENSSTUG00000032431) #24	ENSSTUG00000032554	cpeb1a (ENSSTUG00000032587)	AP3B2 (ENSSTUG00000032986)	rbpms2a (ENSSTUG00000036019) #14	ENSSTUG00000036055	OAZ2 (ENSSTUG00000036061) #15	psma4 (ENSSTUG00000036080)	ENSSTUG00000036173	IREB2 (ENSSTUG00000036287)	slc25a44a (ENSSTUG00000039660)	skic8 (ENSSTUG00000039670)	CRABP1 (ENSSTUG00000039709)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000157859.a.a.c	ENSGT00400000022240	ENSGT00940000164138.c	ENSGT00940000155465.j	ENSGT00940000162591	ENSGT00390000016223.h.b.b	ENSGT00940000160394.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b.c	ENSGT00940000159837.f.a	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00390000017953.A	ENSGT00940000158166.e	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.r #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447.c	ENSGT00510000047494
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000033941	ITGA11 (ENSOMYG00000033280)	ENSOMYG00000053327	CORO2B (ENSOMYG00000032581)	NOX5 (ENSOMYG00000032499)	ambra1b (ENSOMYG00000032459)	ENSOMYG00000032452	mdkb (ENSOMYG00000032441)	DGKZ (ENSOMYG00000032135)	PHF21A (ENSOMYG00000031899)	ENSOMYG00000031863	cd59 (ENSOMYG00000031856)	ENSOMYG00000031851	ENSOMYG00000031838	ENSOMYG00000031251	ppib (ENSOMYG00000031100) #22	snx22 (ENSOMYG00000031081) #23	snx1a (ENSOMYG00000030785) #24	ENSOMYG00000030680	cpeb1a (ENSOMYG00000029664)	ENSOMYG00000025365	ENSOMYG00000024258 #14	ENSOMYG00000024192 #15	psma4 (ENSOMYG00000024164)	ENSOMYG00000020202	slc25a44a (ENSOMYG00000019976)	ENSOMYG00000052111	skic8 (ENSOMYG00000019891)	ENSOMYG00000019861	ENSOMYG00000064270	sin3aa (ENSOMYG00000019728)
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000157859.a.b	ENSGT00400000022240	ENSGT00940000164138.c	ENSGT00940000155465.j	ENSGT00940000162591	ENSGT00390000016223.h.b.b	ENSGT00940000160394.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b.c	ENSGT00940000159837.f.a	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00390000017953.A	ENSGT00940000158166.e	ENSGT00940000158007 #22	ENSGT00390000001280.a #23	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000155524.e	ENSGT00940000156817	ENSGT00940000158086.b #14	ENSGT00940000157725.r #15	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447.c	ENSGT00510000047494
Chinook salmon	MODERN SPECIES	10	ENSOTSG00005043318	ITGA11 (ENSOTSG00005043320)	CORO2B (ENSOTSG00005043475)	NOX5 (ENSOTSG00005043512)	ambra1b (ENSOTSG00005043517)	ENSOTSG00005043519	mdkb (ENSOTSG00005043520)	DGKZ (ENSOTSG00005043521)	PHF21A (ENSOTSG00005043589)	ENSOTSG00005043603	ENSOTSG00005043604	ENSOTSG00005043606	adpgk (ENSOTSG00005043608)	bbs4 (ENSOTSG00005043616)	ENSOTSG00005043946	ppib (ENSOTSG00005043948) #22	snx22 (ENSOTSG00005043949) #23	snx1a (ENSOTSG00005043958) #24	ENSOTSG00005044221	AP3B2 (ENSOTSG00005044261)	rbpms2a (ENSOTSG00005046440) #14	OAZ2 (ENSOTSG00005046445) #15	psma4 (ENSOTSG00005010697)	IREB2 (ENSOTSG00005010699)	slc25a44a (ENSOTSG00005015144)	skic8 (ENSOTSG00005015146)	crabp1b (ENSOTSG00005015151)	sin3aa (ENSOTSG00005015154)	PTPN9 (ENSOTSG00005015177)	snupn (ENSOTSG00005015178)	snx33 (ENSOTSG00005015179)
Northern pike	MODERN SPECIES	18	CLN6 (ENSELUG00000002792)	ENSELUG00000002780	ITGA11 (ENSELUG00000002751)	CORO2B (ENSELUG00000002708)	NOX5 (ENSELUG00000002691)	ambra1b (ENSELUG00000002670)	ENSELUG00000002647	mdkb (ENSELUG00000033212)	DGKZ (ENSELUG00000024522)	PHF21A (ENSELUG00000024504)	ENSELUG00000024447	ENSELUG00000029217	ENSELUG00000024383	adpgk (ENSELUG00000024358)	bbs4 (ENSELUG00000024337)	ppib (ENSELUG00000024189) #22	snx22 (ENSELUG00000028281) #23	snx1a (ENSELUG00000024151) #24	ENSELUG00000024145	cpeb1a (ENSELUG00000024115)	AP3B2 (ENSELUG00000024025)	RBPMS2 (ENSELUG00000023770) #14	ENSELUG00000027462	OAZ2 (ENSELUG00000023755) #15	psma4 (ENSELUG00000023716)	IREB2 (ENSELUG00000023666)	slc25a44a (ENSELUG00000023613)	skic8 (ENSELUG00000023597)	CRABP1 (ENSELUG00000023551)	sin3aa (ENSELUG00000023525)	PTPN9 (ENSELUG00000023443)
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00940000176053	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Cod	MODERN SPECIES	22	FJX1 (ENSGMOG00000035366)	trim44 (ENSGMOG00000024424)	ldlrad3 (ENSGMOG00000003875)	ENSGMOG00000028312	ENSGMOG00000033249	ENSGMOG00000032948	hrasa (ENSGMOG00000010196)	ENSGMOG00000025895	gdpgp1 (ENSGMOG00000030669)	RHCG (ENSGMOG00000008094)	ENSGMOG00000008100	fanci (ENSGMOG00000008107)	ENSGMOG00000008111	ENSGMOG00000008115	ENSGMOG00000031455	ENSGMOG00000019482 #22	ENSGMOG00000019590 #15	ENSGMOG00000019587	ENSGMOG00000019567	ENSGMOG00000030144	ENSGMOG00000019565	ENSGMOG00000026697	ENSGMOG00000030720	ENSGMOG00000028025	PDE3A (ENSGMOG00000005307)	AEBP2 (ENSGMOG00000005290)	PLEKHA5 (ENSGMOG00000005244)	PLCZ1 (ENSGMOG00000005210)	ENSGMOG00000034513	ENSGMOG00000033862	ENSGMOG00000036971
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00940000176053	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Pinecone sodierfish	MODERN SPECIES	20	CSPG4 (ENSMMDG00005005322)	snx33 (ENSMMDG00005005328)	snupn (ENSMMDG00005005336)	PTPN9 (ENSMMDG00005005424)	sin3aa (ENSMMDG00005007370)	crabp1a (ENSMMDG00005007381)	skic8 (ENSMMDG00005007388)	slc25a44a (ENSMMDG00005007626)	IREB2 (ENSMMDG00005007782)	snx1a (ENSMMDG00005016453) #24	ENSMMDG00005016495	AP3B2 (ENSMMDG00005016497)	ENSMMDG00005016501	snx22 (ENSMMDG00005016504) #23	adpgk (ENSMMDG00005016507)	ppib (ENSMMDG00005016511) #22	OAZ2 (ENSMMDG00005016515) #15	psma4 (ENSMMDG00005016523)	myo9ab (ENSMMDG00005016568)	ENSMMDG00005016577	plex9.2 (ENSMMDG00005016580)	mpi (ENSMMDG00005016584)	scamp2 (ENSMMDG00005016607)	ENSMMDG00005016609	ENSMMDG00005016614	PPIP5K1 (ENSMMDG00005016687)	ENSMMDG00005018062	hapln3 (ENSMMDG00005018067)	mfge8b (ENSMMDG00005018074)	ABHD2 (ENSMMDG00005018226)	rlbp1b (ENSMMDG00005018231)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00940000176053	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Tiger tail seahorse	MODERN SPECIES	223	rpgrip1l (ENSHCOG00000009004)	NOX5 (ENSHCOG00000008971)	ambra1b (ENSHCOG00000008935)	ENSHCOG00000008919	ENSHCOG00000008905	st8sia2 (ENSHCOG00000008890)	fam174b (ENSHCOG00000008871)	ENSHCOG00000008865	chd2 (ENSHCOG00000008855)	ENSHCOG00000008779	rgma (ENSHCOG00000008770)	si:ch1073-281m9.1 (ENSHCOG00000008757)	ENSHCOG00000008748	ckmt1 (ENSHCOG00000008712)	pdia3 (ENSHCOG00000008703)	ppib (ENSHCOG00000008676) #22	OAZ2 (ENSHCOG00000008670) #15	ENSHCOG00000008657	myo9ab (ENSHCOG00000008638)	plex9.2 (ENSHCOG00000008574)	mpi (ENSHCOG00000008568)	scamp2 (ENSHCOG00000008543)	ENSHCOG00000008508	PPIP5K1 (ENSHCOG00000008460)	ENSHCOG00000008375	hapln3 (ENSHCOG00000000273)	mfge8b (ENSHCOG00000008333)	ABHD2 (ENSHCOG00000008328)	rlbp1b (ENSHCOG00000008283)	ENSHCOG00000008259	adpgk (ENSHCOG00000008246)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00940000176053	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000154996.a.b.a	ENSGT00940000158464	ENSGT00940000157591	ENSGT00940000158627	ENSGT00390000018100	ENSGT00950000182857.a.b	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000159422.a.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000154996.a.b.a	ENSGT00940000158464	ENSGT00940000157591	ENSGT00940000158627	ENSGT00390000018100	ENSGT00950000182857.a.b	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000159477	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT01020000230364.a.b	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.a.b.a.y.b	ENSGT01100000263518.B.b.b.a	ENSGT00390000018285	ENSGT01030000234648.a.b.a.a.b.cb.a	ENSGT00940000161262.b
Indian medaka	MODERN SPECIES	606							mc2r (ENSOMEG00000013976)	ENSOMEG00000013957	ENSOMEG00000013888	ENSOMEG00000013790	ENSOMEG00000013773	ENSOMEG00000013756	ENSOMEG00000013733	ENSOMEG00000013660 #23	adpgk (ENSOMEG00000013647)	ppib (ENSOMEG00000013626) #22	OAZ2 (ENSOMEG00000013601) #15	myo9ab (ENSOMEG00000013527)	ENSOMEG00000013328	mpi (ENSOMEG00000013311)	scamp2 (ENSOMEG00000013290)	fezf1 (ENSOMEG00000013274)	slc13a1 (ENSOMEG00000013251)	IQUB (ENSOMEG00000013218)	hyal6 (ENSOMEG00000013166)	HYAL4 (ENSOMEG00000013154)	ENSOMEG00000013072	GPR37 (ENSOMEG00000012972)	pot1 (ENSOMEG00000000327)	grm8b (ENSOMEG00000012896)	CHST1 (ENSOMEG00000012868)
Javanese ricefish	MODERN SPECIES	20	PTPN9 (ENSOJAG00000009821)	snupn (ENSOJAG00000009736)	snx33 (ENSOJAG00000009708)	CSPG4 (ENSOJAG00000009656)	ENSOJAG00000009630	LINGO1 (ENSOJAG00000009620)	hmg20a (ENSOJAG00000009602)	PEAK1 (ENSOJAG00000009595)	syt12 (ENSOJAG00000009576)	cat (ENSOJAG00000009412)	ENSOJAG00000009358	ENSOJAG00000009334	ENSOJAG00000009302	ENSOJAG00000009291 #23	adpgk (ENSOJAG00000009256)	ppib (ENSOJAG00000009196) #22	ENSOJAG00000009150	OAZ2 (ENSOJAG00000009075) #15	myo9ab (ENSOJAG00000006449)	ENSOJAG00000006245	mpi (ENSOJAG00000006219)	scamp2 (ENSOJAG00000006200)	fezf1 (ENSOJAG00000006167)	slc13a1 (ENSOJAG00000005938)	IQUB (ENSOJAG00000005813)	hyal6 (ENSOJAG00000005777)	HYAL4 (ENSOJAG00000005762)	ENSOJAG00000005647	GPR37 (ENSOJAG00000005638)	pot1 (ENSOJAG00000005624)	grm8b (ENSOJAG00000004853)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000154996.a.b.a	ENSGT00940000158464	ENSGT00940000157591	ENSGT00940000158627	ENSGT00390000018100	ENSGT00950000182857.a.b.q	ENSGT00940000156209.v.b	ENSGT00950000182857.a.b.r	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000024204	hmg20a (ENSORLG00000001794)	ENSORLG00000027316	PEAK1 (ENSORLG00000030332)	ENSORLG00000000574	syt12 (ENSORLG00000001762)	cat (ENSORLG00000001746)	ENSORLG00000001737	ENSORLG00000016164	ENSORLG00000023363	ENSORLG00000001731	ENSORLG00000024330	ENSORLG00000028839	snx22 (ENSORLG00000001725) #23	adpgk (ENSORLG00000001716)	ppib (ENSORLG00000001706) #22	OAZ2 (ENSORLG00000001693) #15	ENSORLG00000026017	ENSORLG00000001682	ENSORLG00000030645	plex9.2 (ENSORLG00000023958)	mpi (ENSORLG00000001616)	scamp2 (ENSORLG00000026524)	ENSORLG00000029905	ENSORLG00000024836	ENSORLG00000001575	ENSORLG00000001551	hapln3 (ENSORLG00000001540)	mfge8b (ENSORLG00000001529)	ABHD2 (ENSORLG00000001498)	rlbp1b (ENSORLG00000001487)
Chinese medaka	MODERN SPECIES	1170														ENSOSIG00000013602 #23	adpgk (ENSOSIG00000013597)	ppib (ENSOSIG00000013589) #22	ENSOSIG00000013583 #15	myo9ab (ENSOSIG00000013178)
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
NAME_6	ANCESTRAL SPECIES	216														ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e.e	ENSGT00390000012715.e.f	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Sailfin molly	MODERN SPECIES	2557														snx22 (ENSPLAG00000010845) #23	adpgk (ENSPLAG00000010865)	ppib (ENSPLAG00000010904) #22	OAZ2 (ENSPLAG00000010932) #15
Amazon molly	MODERN SPECIES	580														snx22 (ENSPFOG00000006522) #23	adpgk (ENSPFOG00000006413)	ppib (ENSPFOG00000006347) #22	OAZ2 (ENSPFOG00000006244) #15	myo9ab (ENSPFOG00000005553)	ENSPFOG00000021742	ENSPFOG00000005521	plex9.2 (ENSPFOG00000005517)	mpi (ENSPFOG00000005394)	scamp2 (ENSPFOG00000005300)	ENSPFOG00000022374	ENSPFOG00000005194	PPIP5K1 (ENSPFOG00000004141)	ENSPFOG00000003926	hapln3 (ENSPFOG00000003850)	mfge8b (ENSPFOG00000003628)	ABHD2 (ENSPFOG00000003442)	rlbp1b (ENSPFOG00000003347)
Guppy	MODERN SPECIES	458	skic8 (ENSPREG00000012810)	slc25a44a (ENSPREG00000012837)	IREB2 (ENSPREG00000012857)	snx1a (ENSPREG00000012964) #24	ENSPREG00000013012	AP3B2 (ENSPREG00000013040)	ENSPREG00000013093	ENSPREG00000013113	ENSPREG00000013135	ENSPREG00000013144	ENSPREG00000013158	ENSPREG00000013169	ENSPREG00000013181	ENSPREG00000013216	ENSPREG00000013231 #23	ppib (ENSPREG00000013241) #22	OAZ2 (ENSPREG00000013263) #15	myo9ab (ENSPREG00000013339)	ENSPREG00000013537	plex9.2 (ENSPREG00000013548)	mpi (ENSPREG00000013559)	scamp2 (ENSPREG00000013585)	hyal6 (ENSPREG00000013624)	wasla (ENSPREG00000013642)	ENSPREG00000013687	slc13a1 (ENSPREG00000013715)	grm3 (ENSPREG00000013797)	sema3d (ENSPREG00000013877)	sema3ab (ENSPREG00000013984)	sema3e (ENSPREG00000014029)	ENSPREG00000014062
Platyfish	MODERN SPECIES	11	ENSXMAG00000005084	CERK (ENSXMAG00000029787)	ciao2a (ENSXMAG00000005100) #25	spg11 (ENSXMAG00000005107)	znf277 (ENSXMAG00000022404)	acot19 (ENSXMAG00000026116)	ENSXMAG00000021949	ENSXMAG00000025353	ENSXMAG00000022546	ENSXMAG00000024754	ENSXMAG00000024234	ENSXMAG00000022338	ENSXMAG00000021869	snx22 (ENSXMAG00000022428) #23	adpgk (ENSXMAG00000012200)	ppib (ENSXMAG00000027106) #22	OAZ2 (ENSXMAG00000022470) #15	myo9ab (ENSXMAG00000012266)	ENSXMAG00000027925	zgc:56106 (ENSXMAG00000012198)	plekha7a (ENSXMAG00000012334)	ppp1r15b (ENSXMAG00000024934)	rps13 (ENSXMAG00000012360)	PIK3C2A (ENSXMAG00000012374)	nucb2b (ENSXMAG00000012412)	si:dkey-10o6.2 (ENSXMAG00000012432)	ENSXMAG00000012433	ENSXMAG00000022128	tdg.1 (ENSXMAG00000012434)	TDG (ENSXMAG00000012448)	uqcc6 (ENSXMAG00000023821)
NAME_4	ANCESTRAL SPECIES	65		ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Mummichog	MODERN SPECIES	2196	snupn (ENSFHEG00000017627)	PTPN9 (ENSFHEG00000017639)	sin3aa (ENSFHEG00000017736)	crabp1a (ENSFHEG00000017747)	skic8 (ENSFHEG00000000901)	slc25a44a (ENSFHEG00000017810)	IREB2 (ENSFHEG00000017905)	snx1a (ENSFHEG00000017951) #24	ENSFHEG00000017982	AP3B2 (ENSFHEG00000017991)	ENSFHEG00000017997	ENSFHEG00000018030	ENSFHEG00000018059	snx22 (ENSFHEG00000018072) #23	adpgk (ENSFHEG00000018095)	ppib (ENSFHEG00000018102) #22	OAZ2 (ENSFHEG00000018107) #15	myo9ab (ENSFHEG00000018161)	ENSFHEG00000018181	plex9.2 (ENSFHEG00000018188)	mpi (ENSFHEG00000018214)	scamp2 (ENSFHEG00000018228)	ENSFHEG00000018240	ENSFHEG00000018247	PPIP5K1 (ENSFHEG00000018336)	ENSFHEG00000018489	hapln3 (ENSFHEG00000018530)	mfge8b (ENSFHEG00000018539)	ABHD2 (ENSFHEG00000018595)	rlbp1b (ENSFHEG00000018621)	ENSFHEG00000018658
Sheepshead minnow	MODERN SPECIES	524												AP3B2 (ENSCVAG00000001363)	ENSCVAG00000001386	snx22 (ENSCVAG00000001395) #23	adpgk (ENSCVAG00000001416)	ppib (ENSCVAG00000001426) #22	OAZ2 (ENSCVAG00000001442) #15	myo9ab (ENSCVAG00000001507)	ENSCVAG00000001533	TTLL3 (ENSCVAG00000001557)	ENSCVAG00000001573	mpi (ENSCVAG00000000817)	scamp2 (ENSCVAG00000001599)	ENSCVAG00000001610	PPIP5K1 (ENSCVAG00000001641)	ENSCVAG00000001701	ENSCVAG00000001722
Aplocheiloidei	ANCESTRAL SPECIES	161				ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f
Turquoise killifish	MODERN SPECIES	1615	ENSNFUG00015006157	ENSNFUG00015006160	tmem47 (ENSNFUG00015006165)	ENSNFUG00015006174	dmd (ENSNFUG00015006213)	cavin2b (ENSNFUG00015006380)	RGN (ENSNFUG00015006400)	FMNL2B (ENSNFUG00015006506)	PTPN9A (ENSNFUG00015007230)	sin3aa (ENSNFUG00015007374)	ENSNFUG00015007638	crabp1a (ENSNFUG00015007647)	WDR61 (ENSNFUG00015007653)	MPI (ENSNFUG00015007687)	scamp2 (ENSNFUG00015007706)	PPIB (ENSNFUG00015007723) #22	AP3B2 (ENSNFUG00015008025)	Nfu_g_1_014013 (ENSNFUG00015013162)	ENSNFUG00015013176	SNX1A (ENSNFUG00015013207) #24	IREB2 (ENSNFUG00015013841)	SLC25A44 (ENSNFUG00015015202)	ENSNFUG00015015232	ENSNFUG00015015258	PPIP5K1 (ENSNFUG00015015357)	ENSNFUG00015016290	ENSNFUG00015016295	Nfu_g_1_014066 (ENSNFUG00015016301)	CACNA2D4 (ENSNFUG00015016367)	ENSNFUG00015016482	Nfu_g_1_014069 (ENSNFUG00015016532)
Mangrove rivulus	MODERN SPECIES	334							skic8 (ENSKMAG00000016116)	slc25a44a (ENSKMAG00000016100)	IREB2 (ENSKMAG00000016020)	snx1a (ENSKMAG00000015995) #24	ENSKMAG00000015978	AP3B2 (ENSKMAG00000015937)	ENSKMAG00000015905	snx22 (ENSKMAG00000015891) #23	adpgk (ENSKMAG00000015856)	ppib (ENSKMAG00000015842) #22	OAZ2 (ENSKMAG00000015821) #15	myo9ab (ENSKMAG00000015704)	ENSKMAG00000015669	plex9.2 (ENSKMAG00000015660)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Pomacentridae	DUPLICATION
Pomacentridae	ANCESTRAL SPECIES	1														ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007.e #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Pomacentridae_A	ANCESTRAL SPECIES	9														ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007.e #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Amphiprion	ANCESTRAL SPECIES	4												ENSGT00940000166219	ENSGT00940000160121	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007.e #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Clown anemonefish	MODERN SPECIES	2413															adpgk (ENSAOCG00000006502)	ppib (ENSAOCG00000002446) #22	OAZ2 (ENSAOCG00000006436) #15	psma4 (ENSAOCG00000006404)	ENSAOCG00000006371
Orange clownfish	MODERN SPECIES	18	CTTNBP2 (ENSAPEG00000013046)	ENSAPEG00000013010	ENSAPEG00000012995	npsn (ENSAPEG00000012986)	ENSAPEG00000012969	ENSAPEG00000012951	ENSAPEG00000012946	ENSAPEG00000012907	DUS2 (ENSAPEG00000012860)	ENSAPEG00000012847	ENSAPEG00000012832	ENSAPEG00000012759	cpa4 (ENSAPEG00000012746)	snx22 (ENSAPEG00000012730) #23	adpgk (ENSAPEG00000012671)	ppib (ENSAPEG00000012654) #22	OAZ2 (ENSAPEG00000012634) #15	psma4 (ENSAPEG00000012616)	myo9ab (ENSAPEG00000012501)	plex9.2 (ENSAPEG00000012492)	mpi (ENSAPEG00000012475)	scamp2 (ENSAPEG00000012420)	ENSAPEG00000012411	ENSAPEG00000012402	PPIP5K1 (ENSAPEG00000012316)	ENSAPEG00000012297	ENSAPEG00000012155	hapln3 (ENSAPEG00000012130)	mfge8b (ENSAPEG00000012106)	ABHD2 (ENSAPEG00000012032)	rlbp1b (ENSAPEG00000012012)
Spiny chromis	MODERN SPECIES	452	ENSAPOG00000011777	ENSAPOG00000011763	SNX13 (ENSAPOG00000011698)	ENSAPOG00000011554	btd (ENSAPOG00000011535)	ENSAPOG00000011500	ENSAPOG00000011440	ENSAPOG00000011429	ENSAPOG00000011393	cdk6 (ENSAPOG00000011370)	hepacam2 (ENSAPOG00000011325)	VPS50 (ENSAPOG00000011306)	ENSAPOG00000011184	snx22 (ENSAPOG00000011169) #23	adpgk (ENSAPOG00000011148)	ppib (ENSAPOG00000011121) #22	OAZ2 (ENSAPOG00000011113) #15	psma4 (ENSAPOG00000011080)
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000158007.f #22
Pomacentridae_A	ANCESTRAL SPECIES	96																ENSGT00940000158007.f #22	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00910000144335	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424	ENSGT00940000158198	ENSGT01100000266271	ENSGT00390000008646	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT01030000234515.a.b.a.b.a	ENSGT00390000001790
Amphiprion	ANCESTRAL SPECIES	117														ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000158007.f #22	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00910000144335	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424	ENSGT00940000158198	ENSGT01100000266271	ENSGT00390000008646	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT01030000234515.a.b.a.b.a	ENSGT00390000001790
Orange clownfish	MODERN SPECIES		zgc:92818 (ENSAPEG00000000249)	vps35 (ENSAPEG00000000250)	tollip (ENSAPEG00000000251)	ENSAPEG00000000252	ENSAPEG00000000253	ENSAPEG00000000254	ENSAPEG00000000255	ENSAPEG00000000256	snrpa1 (ENSAPEG00000000257)	selenos (ENSAPEG00000000258)	ENSAPEG00000000259	ENSAPEG00000000260	ENSAPEG00000000261	EFL1 (ENSAPEG00000000262)	mex3b (ENSAPEG00000000263)	ppib (ENSAPEG00000000264) #22	TMC3 (ENSAPEG00000000265)	STARD5 (ENSAPEG00000000266)	ENSAPEG00000000267	ENSAPEG00000000268	TLNRD1 (ENSAPEG00000000269)	mesd (ENSAPEG00000000270)	CEMIP (ENSAPEG00000000271)	abhd17c (ENSAPEG00000000272)	ENSAPEG00000000273	arnt2 (ENSAPEG00000000274)	ENSAPEG00000000275	fah (ENSAPEG00000000276)	mthfs (ENSAPEG00000000277)	MINAR1 (ENSAPEG00000000278)	ADAMTS17 (ENSAPEG00000000279)
Clown anemonefish	MODERN SPECIES	3614														EFL1 (ENSAOCG00000023933)	mex3b (ENSAOCG00000023903)	ppib (ENSAOCG00000023890) #22	ENSAOCG00000023878	TMC3 (ENSAOCG00000023867)	STARD5 (ENSAOCG00000023844)	ENSAOCG00000023835	ENSAOCG00000023825	TLNRD1 (ENSAOCG00000023804)	mesd (ENSAOCG00000023801)	CEMIP (ENSAOCG00000023786)
Spiny chromis	MODERN SPECIES	1468															mex3b (ENSAPOG00000006457)	ppib (ENSAPOG00000006567) #22	TMC3 (ENSAPOG00000006652)	STARD5 (ENSAPOG00000006665)
Bicolor damselfish	MODERN SPECIES	253													ENSSPAG00000013052	snx22 (ENSSPAG00000013036) #23	adpgk (ENSSPAG00000013013)	ppib (ENSSPAG00000012948) #22	OAZ2 (ENSSPAG00000012926) #15	psma4 (ENSSPAG00000012898)	myo9ab (ENSSPAG00000012819)	plex9.2 (ENSSPAG00000012797)	mpi (ENSSPAG00000012754)	scamp2 (ENSSPAG00000012739)	cpa4 (ENSSPAG00000012539)	ENSSPAG00000012516	ENSSPAG00000012484	KIF21A (ENSSPAG00000012409)	slc2a13b (ENSSPAG00000012354)	lrrk2 (ENSSPAG00000012241)	SLC6A15 (ENSSPAG00000012210)	ENSSPAG00000012185	alx1 (ENSSPAG00000012173)
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156026.f	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Burton s mouthbrooder	MODERN SPECIES	403	CSPG4 (ENSHBUG00000006914)	snx33 (ENSHBUG00000006924)	snupn (ENSHBUG00000006950)	PTPN9 (ENSHBUG00000006994)	sin3aa (ENSHBUG00000007074)	crabp1 (ENSHBUG00000007098)	skic8 (ENSHBUG00000007122)	slc25a44a (ENSHBUG00000007135)	IREB2 (ENSHBUG00000007184)	snx1a (ENSHBUG00000000176) #24	ENSHBUG00000007257	AP3B2 (ENSHBUG00000007295)	LRRC18 (ENSHBUG00000007334)	snx22 (ENSHBUG00000007351) #23	adpgk (ENSHBUG00000007378)	ppib (ENSHBUG00000000186) #22	OAZ2 (ENSHBUG00000007425) #15	myo9ab (ENSHBUG00000007522)	ENSHBUG00000007541	mpi (ENSHBUG00000007587)	scamp2 (ENSHBUG00000007616)	ENSHBUG00000007712	ENSHBUG00000007737	PPIP5K1 (ENSHBUG00000008112)	ENSHBUG00000008251	hapln3 (ENSHBUG00000008267)	mfge8b (ENSHBUG00000008283)	ABHD2 (ENSHBUG00000008349)	rlbp1b (ENSHBUG00000008363)	ENSHBUG00000008380	pdia3 (ENSHBUG00000008434)
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156026.f	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
P. nyererei	MODERN SPECIES	338	CSPG4 (ENSPNYG00000008654)	snx33 (ENSPNYG00000008743)	snupn (ENSPNYG00000008752)	PTPN9 (ENSPNYG00000008785)	sin3aa (ENSPNYG00000008836)	crabp1a (ENSPNYG00000008897)	skic8 (ENSPNYG00000008912)	slc25a44a (ENSPNYG00000008948)	IREB2 (ENSPNYG00000008976)	snx1a (ENSPNYG00000009088) #24	ENSPNYG00000009150	AP3B2 (ENSPNYG00000009200)	LRRC18 (ENSPNYG00000009246)	snx22 (ENSPNYG00000009265) #23	adpgk (ENSPNYG00000009283)	ppib (ENSPNYG00000009306) #22	OAZ2 (ENSPNYG00000009381) #15	myo9ab (ENSPNYG00000009446)	mpi (ENSPNYG00000009672)	scamp2 (ENSPNYG00000009698)	ENSPNYG00000009734	PPIP5K1 (ENSPNYG00000009853)	ENSPNYG00000009909	ENSPNYG00000009921	hapln3 (ENSPNYG00000009966)	mfge8b (ENSPNYG00000009978)	ABHD2 (ENSPNYG00000009992)	rlbp1b (ENSPNYG00000010043)	ENSPNYG00000010204	pdia3 (ENSPNYG00000010218)	CKMT1A (ENSPNYG00000010267)
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156026.f	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Zebra mbuna	MODERN SPECIES	1110	CSPG4 (ENSMZEG00005010756)	snx33 (ENSMZEG00005010799)	snupn (ENSMZEG00005010806)	PTPN9 (ENSMZEG00005010818)	sin3aa (ENSMZEG00005010839)	crabp1a (ENSMZEG00005010894)	skic8 (ENSMZEG00005010903)	slc25a44a (ENSMZEG00005010921)	IREB2 (ENSMZEG00005010935)	snx1a (ENSMZEG00005010979) #24	ENSMZEG00005011003	AP3B2 (ENSMZEG00005011020)	LRRC18 (ENSMZEG00005011049)	snx22 (ENSMZEG00005011054) #23	adpgk (ENSMZEG00005011065)	ppib (ENSMZEG00005011082) #22	OAZ2 (ENSMZEG00005011098) #15	myo9ab (ENSMZEG00005011148)	mpi (ENSMZEG00005011185)	scamp2 (ENSMZEG00005011191)	ENSMZEG00005011246	PPIP5K1 (ENSMZEG00005011301)	ENSMZEG00005011474	ENSMZEG00005011488	hapln3 (ENSMZEG00005011511)	mfge8b (ENSMZEG00005011554)	ABHD2 (ENSMZEG00005011640)	rlbp1b (ENSMZEG00005011671)	ENSMZEG00005011683	ENSMZEG00005011688	pdia3 (ENSMZEG00005011699)
Eastern happy	MODERN SPECIES	19	CSPG4 (ENSACLG00000025191)	snx33 (ENSACLG00000025190)	snupn (ENSACLG00000025155)	PTPN9 (ENSACLG00000025106)	sin3aa (ENSACLG00000025048)	crabp1a (ENSACLG00000024794)	skic8 (ENSACLG00000024779)	slc25a44a (ENSACLG00000024763)	IREB2 (ENSACLG00000024688)	snx1a (ENSACLG00000024609) #24	ENSACLG00000024573	AP3B2 (ENSACLG00000024451)	LRRC18 (ENSACLG00000024423)	ENSACLG00000024412 #23	adpgk (ENSACLG00000024385)	ppib (ENSACLG00000024356) #22	OAZ2 (ENSACLG00000024099) #15	ENSACLG00000024091	ENSACLG00000024089	myo9ab (ENSACLG00000024008)	ENSACLG00000023991	mpi (ENSACLG00000023928)	scamp2 (ENSACLG00000023915)	ENSACLG00000023908	ENSACLG00000023885	ENSACLG00000023875	PPIP5K1 (ENSACLG00000023567)	ENSACLG00000023486	hapln3 (ENSACLG00000023480)	mfge8b (ENSACLG00000023446)	ABHD2 (ENSACLG00000023427)
Lyretail cichlid	MODERN SPECIES	293	LINGO1 (ENSNBRG00000018030)	CSPG4 (ENSNBRG00000017965)	snx33 (ENSNBRG00000017942)	snupn (ENSNBRG00000017919)	PTPN9 (ENSNBRG00000017893)	sin3aa (ENSNBRG00000017838)	crabp1a (ENSNBRG00000017818)	skic8 (ENSNBRG00000017776)	slc25a44a (ENSNBRG00000017750)	IREB2 (ENSNBRG00000017676)	snx1a (ENSNBRG00000017616) #24	ENSNBRG00000017598	AP3B2 (ENSNBRG00000017387)	ENSNBRG00000017342 #23	adpgk (ENSNBRG00000017328)	ppib (ENSNBRG00000017314) #22	OAZ2 (ENSNBRG00000017294) #15	myo9ab (ENSNBRG00000017220)	mpi (ENSNBRG00000017191)	scamp2 (ENSNBRG00000017179)	ENSNBRG00000017099	ENSNBRG00000017064	PPIP5K1 (ENSNBRG00000016908)	ENSNBRG00000016772	ENSNBRG00000016740	hapln3 (ENSNBRG00000016718)	mfge8b (ENSNBRG00000016591)	ABHD2 (ENSNBRG00000016542)	rlbp1b (ENSNBRG00000016510)	ENSNBRG00000016499	pdia3 (ENSNBRG00000016425)
Nile tilapia	MODERN SPECIES	19	hmg20a (ENSONIG00000012862)	LINGO1 (ENSONIG00000020873)	CSPG4 (ENSONIG00000012858)	snx33 (ENSONIG00000012857)	snupn (ENSONIG00000012855)	PTPN9 (ENSONIG00000012852)	sin3aa (ENSONIG00000012851)	skic8 (ENSONIG00000012845)	slc25a44a (ENSONIG00000012844)	IREB2 (ENSONIG00000012838)	snx1a (ENSONIG00000012833) #24	ENSONIG00000012830	AP3B2 (ENSONIG00000012821)	snx22 (ENSONIG00000040696) #23	adpgk (ENSONIG00000032289)	ppib (ENSONIG00000012814) #22	OAZ2 (ENSONIG00000012811) #15	myo9ab (ENSONIG00000012795)	mpi (ENSONIG00000027835)	SCAMP2 (ENSONIG00000015646)	ENSONIG00000015643	ENSONIG00000027891	PPIP5K1 (ENSONIG00000015640)	ENSONIG00000015637	hapln3 (ENSONIG00000015632)	mfge8b (ENSONIG00000015629)	ABHD2 (ENSONIG00000015627)	rlbp1b (ENSONIG00000015624)	ENSONIG00000015622	pdia3 (ENSONIG00000015614)	CKMT1A (ENSONIG00000015611)
Midas cichlid	MODERN SPECIES	783													AP3B2 (ENSACIG00000023778)	snx22 (ENSACIG00000023772) #23	adpgk (ENSACIG00000023769)	ppib (ENSACIG00000023639) #22
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00940000176053	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00940000160836.d.b.a.a	ENSGT00940000154905.i.b	ENSGT00940000156976.gb	ENSGT00940000164955.b	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00940000160974.b.c	ENSGT00510000048454	ENSGT00390000016785.c	ENSGT00940000158775	ENSGT00990000203778	ENSGT00510000047881	ENSGT00940000155837.o.e.a	ENSGT01030000234519.e.b.k.b
Tetraodon	MODERN SPECIES	4	LINGO1 (ENSTNIG00000008459)	ENSTNIG00000008458	snx33 (ENSTNIG00000008457)	snupn (ENSTNIG00000008456)	PTPN9 (ENSTNIG00000008455)	sin3aa (ENSTNIG00000008454)	crabp1a (ENSTNIG00000008453)	skic8 (ENSTNIG00000008452)	slc25a44a (ENSTNIG00000008451)	ENSTNIG00000008450	snx1a (ENSTNIG00000008449) #24	ENSTNIG00000008448	AP3B2 (ENSTNIG00000008447)	snx22 (ENSTNIG00000008446) #23	adpgk (ENSTNIG00000008445)	ppib (ENSTNIG00000008444) #22	OAZ2 (ENSTNIG00000008443) #15	ENSTNIG00000000287	ENSTNIG00000001255	MYO9A (ENSTNIG00000008442)	ENSTNIG00000002358	CERK (ENSTNIG00000008441)	ENSTNIG00000000775	GRAMD4 (ENSTNIG00000008440)	drd4a (ENSTNIG00000008439)	ENSTNIG00000008438	kif23 (ENSTNIG00000008437)	TLE3 (ENSTNIG00000008436)	morf4l1 (ENSTNIG00000008435)	PIAS1 (ENSTNIG00000008434)	skor1b (ENSTNIG00000001504)
Fugu	MODERN SPECIES	21	ENSTRUG00000033064	CSPG4 (ENSTRUG00000016112)	snx33 (ENSTRUG00000016103)	snupn (ENSTRUG00000016085)	PTPN9 (ENSTRUG00000016059)	sin3aa (ENSTRUG00000015995)	crabp1a (ENSTRUG00000015977)	skic8 (ENSTRUG00000021247)	slc25a44a (ENSTRUG00000015947)	IREB2 (ENSTRUG00000015902)	snx1a (ENSTRUG00000015869) #24	ENSTRUG00000015847	AP3B2 (ENSTRUG00000015751)	snx22 (ENSTRUG00000015748) #23	adpgk (ENSTRUG00000015736)	ppib (ENSTRUG00000015718) #22	OAZ2 (ENSTRUG00000015702) #15	ENSTRUG00000015674	myo9ab (ENSTRUG00000015509)	CERK (ENSTRUG00000015494)	ENSTRUG00000031619	GRAMD4 (ENSTRUG00000015437)	ENSTRUG00000025260	drd4a (ENSTRUG00000015396)	ENSTRUG00000015338	rapsn (ENSTRUG00000015311)	kbtbd4 (ENSTRUG00000023881)	ENSTRUG00000023761	ddb2 (ENSTRUG00000015270)	kif23 (ENSTRUG00000015223)	TLE3 (ENSTRUG00000015125)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000182176	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Lumpfish	MODERN SPECIES	21	CSPG4 (ENSCLMG00005012282)	snx33 (ENSCLMG00005012273)	snupn (ENSCLMG00005012267)	PTPN9 (ENSCLMG00005011650)	sin3aa (ENSCLMG00005009901)	crabp1a (ENSCLMG00005009887)	skic8 (ENSCLMG00005009885)	slc25a44a (ENSCLMG00005009884)	IREB2 (ENSCLMG00005005950)	snx1a (ENSCLMG00005005840) #24	ENSCLMG00005005835	AP3B2 (ENSCLMG00005005218)	ENSCLMG00005005207	snx22 (ENSCLMG00005005206) #23	adpgk (ENSCLMG00005005205)	ppib (ENSCLMG00005005204) #22	OAZ2 (ENSCLMG00005005203) #15	psma4 (ENSCLMG00005005198)	MYO9A (ENSCLMG00005000602)	ENSCLMG00005000528	mpi (ENSCLMG00005000525)	scamp2 (ENSCLMG00005000521)	ENSCLMG00005000517	PPIP5K1 (ENSCLMG00005000501)	ENSCLMG00005000485	hapln3 (ENSCLMG00005000483)	mfge8b (ENSCLMG00005000340)	ABHD2 (ENSCLMG00005000336)	rlbp1b (ENSCLMG00005000333)	ENSCLMG00005000332	pdia3 (ENSCLMG00005000317)
Stickleback	MODERN SPECIES	14	CSPG4 (ENSGACG00000007480)	snx33 (ENSGACG00000007474)	snupn (ENSGACG00000007450)	PTPN9 (ENSGACG00000007434)	sin3aa (ENSGACG00000007425)	crabp1a (ENSGACG00000007393)	skic8 (ENSGACG00000007380)	slc25a44a (ENSGACG00000007371)	IREB2 (ENSGACG00000007341)	ENSGACG00000007340	snx1a (ENSGACG00000007291) #24	ENSGACG00000007281	AP3B2 (ENSGACG00000007256)	snx22 (ENSGACG00000007247) #23	adpgk (ENSGACG00000007242)	ppib (ENSGACG00000007238) #22	OAZ2 (ENSGACG00000007234) #15	psma4 (ENSGACG00000007210)	myo9ab (ENSGACG00000007186)	plex9.2 (ENSGACG00000007185)	mpi (ENSGACG00000007166)	scamp2 (ENSGACG00000007153)	MAP1A (ENSGACG00000007135)	ENSGACG00000007133	PPIP5K1 (ENSGACG00000007114)	ENSGACG00000007109	hapln3 (ENSGACG00000007102)	mfge8b (ENSGACG00000007091)	ABHD2 (ENSGACG00000007084)	rlbp1b (ENSGACG00000007054)	ENSGACG00000007047
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000182176	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT01020000230648	ENSGT00940000158701.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c
Pike perch	MODERN SPECIES	106	snupn (ENSSLUG00000021384)	PTPN9 (ENSSLUG00000021157)	ENSSLUG00000021143	sin3aa (ENSSLUG00000019802)	crabp1a (ENSSLUG00000019705)	skic8 (ENSSLUG00000019689)	slc25a44a (ENSSLUG00000019685)	ENSSLUG00000019682	IREB2 (ENSSLUG00000019169)	snx1a (ENSSLUG00000019089) #24	ENSSLUG00000019078	AP3B2 (ENSSLUG00000014211)	ENSSLUG00000013975	ENSSLUG00000013968 #23	adpgk (ENSSLUG00000013955)	ppib (ENSSLUG00000013948) #22
Channel bull blenny	MODERN SPECIES	20	hmg20a (ENSCGOG00000001054)	ENSCGOG00000001055	LINGO1 (ENSCGOG00000001056)	CSPG4 (ENSCGOG00000001058)	snx33 (ENSCGOG00000001059)	snupn (ENSCGOG00000001062)	PTPN9 (ENSCGOG00000001072)	sin3aa (ENSCGOG00000001102)	IREB2 (ENSCGOG00000001156)	snx1a (ENSCGOG00000001504) #24	ENSCGOG00000001964	AP3B2 (ENSCGOG00000001996)	ENSCGOG00000002351	ENSCGOG00000002353 #23	adpgk (ENSCGOG00000002356)	ppib (ENSCGOG00000002412) #22	OAZ2 (ENSCGOG00000002426) #15	psma4 (ENSCGOG00000002430)	myo9ab (ENSCGOG00000002505)	ENSCGOG00000003684	ENSCGOG00000003686	mpi (ENSCGOG00000003697)	plex9.2 (ENSCGOG00000003721)	scamp2 (ENSCGOG00000003722)	ENSCGOG00000003727	ENSCGOG00000003729	hapln3 (ENSCGOG00000003735)	mfge8b (ENSCGOG00000003761)	ABHD2 (ENSCGOG00000004481)	rlbp1b (ENSCGOG00000004867)	ENSCGOG00000004872
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
European seabass	MODERN SPECIES	19	CSPG4 (ENSDLAG00005024206)	snx33 (ENSDLAG00005033185)	snupn (ENSDLAG00005024212)	PTPN9 (ENSDLAG00005024233)	sin3aa (ENSDLAG00005024274)	ENSDLAG00005024439	crabp1a (ENSDLAG00005024444)	skic8 (ENSDLAG00005024453)	slc25a44a (ENSDLAG00005028934)	ENSDLAG00005024496	ENSDLAG00005025118 #24	ENSDLAG00005025128	ENSDLAG00005025132	ENSDLAG00005026427 #23	ENSDLAG00005025210	ENSDLAG00005032390 #22	ENSDLAG00005025218 #15	ENSDLAG00005025222	ENSDLAG00005025233	ENSDLAG00005001333	plex9.2 (ENSDLAG00005001335)	ENSDLAG00005001352	scamp2 (ENSDLAG00005030568)	ENSDLAG00005001426	ENSDLAG00005001455	ACAN (ENSDLAG00005001539)	hapln3 (ENSDLAG00005001595)	mfge8b (ENSDLAG00005001662)	ABHD2 (ENSDLAG00005002196)	rlbp1b (ENSDLAG00005012289)	ENSDLAG00005002273
Large yellow croaker	MODERN SPECIES	486	f7l (ENSLCRG00005005330)	f7 (ENSLCRG00005005329)	f7i (ENSLCRG00005005265)	f10 (ENSLCRG00005005260)	prozb (ENSLCRG00005005258)	pcid2 (ENSLCRG00005005254)	ENSLCRG00005005253	ENSLCRG00005005252	ENSLCRG00005005251	f2 (ENSLCRG00005005044)	POMC-B (ENSLCRG00005005035)	ENSLCRG00005005032	dnai4 (ENSLCRG00005005031)	ENSLCRG00005005029 #23	adpgk (ENSLCRG00005005028)	ppib (ENSLCRG00005005027) #22	OAZ2 (ENSLCRG00005005026) #15	psma4 (ENSLCRG00005005017)	myo9ab (ENSLCRG00005004161)	ENSLCRG00005004150	gtf3c3 (ENSLCRG00005004015)	HECW2 (ENSLCRG00005001090)	ENSLCRG00005001036	arhgap1 (ENSLCRG00005001032)	ENSLCRG00005001030	ENSLCRG00005001025	ENSLCRG00005001024	ENSLCRG00005001020	ENSLCRG00005001016	ENSLCRG00005001011	anos1a (ENSLCRG00005000989)
Gilthead seabream	MODERN SPECIES	22	CSPG4 (ENSSAUG00010009818)	snx33 (ENSSAUG00010009822)	snupn (ENSSAUG00010009823)	PTPN9 (ENSSAUG00010009826)	sin3aa (ENSSAUG00010009843)	crabp1a (ENSSAUG00010009935)	skic8 (ENSSAUG00010009937)	slc25a44a (ENSSAUG00010009940)	IREB2 (ENSSAUG00010009975)	snx1a (ENSSAUG00010012178) #24	ENSSAUG00010012188	AP3B2 (ENSSAUG00010012265)	ENSSAUG00010017471	ENSSAUG00010017478 #23	adpgk (ENSSAUG00010017481)	ppib (ENSSAUG00010017487) #22	OAZ2 (ENSSAUG00010017495) #15	psma4 (ENSSAUG00010017501)	myo9ab (ENSSAUG00010017560)	ENSSAUG00010019565	plex9.2 (ENSSAUG00010019569)	mpi (ENSSAUG00010019571)	scamp2 (ENSSAUG00010019573)	ENSSAUG00010019577	PPIP5K1 (ENSSAUG00010019615)	ACAN (ENSSAUG00010022009)	hapln3 (ENSSAUG00010022019)	mfge8b (ENSSAUG00010022025)	ABHD2 (ENSSAUG00010022477)	rlbp1b (ENSSAUG00010022481)	ENSSAUG00010022482
Ballan wrasse	MODERN SPECIES	16	CSPG4 (ENSLBEG00000020740)	snx33 (ENSLBEG00000020717)	snupn (ENSLBEG00000020694)	PTPN9 (ENSLBEG00000020583)	sin3aa (ENSLBEG00000020524)	crabp1a (ENSLBEG00000020497)	skic8 (ENSLBEG00000020456)	slc25a44a (ENSLBEG00000020435)	IREB2 (ENSLBEG00000020371)	snx1a (ENSLBEG00000020317) #24	ENSLBEG00000020300	AP3B2 (ENSLBEG00000020039)	dnai4 (ENSLBEG00000019928)	ENSLBEG00000019905 #23	adpgk (ENSLBEG00000019868)	ppib (ENSLBEG00000019848) #22	OAZ2 (ENSLBEG00000019819) #15	psma4 (ENSLBEG00000019770)	myo9ab (ENSLBEG00000019650)	plex9.2 (ENSLBEG00000019623)	mpi (ENSLBEG00000019591)	scamp2 (ENSLBEG00000019545)	ENSLBEG00000019522	PPIP5K1 (ENSLBEG00000019441)
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Climbing perch	MODERN SPECIES	19	snupn (ENSATEG00000029841)	PTPN9 (ENSATEG00000021039)	sin3aa (ENSATEG00000021070)	crabp1a (ENSATEG00000021183)	skic8 (ENSATEG00000021123)	slc25a44a (ENSATEG00000026214)	ENSATEG00000028452	ENSATEG00000021166 #24	ENSATEG00000026389	ENSATEG00000021236 #24	ENSATEG00000021256	ENSATEG00000021283	ENSATEG00000021323	ENSATEG00000021392 #23	ENSATEG00000021407	ENSATEG00000021416 #22	ENSATEG00000021433 #15	ENSATEG00000021465	ENSATEG00000021489	ENSATEG00000025308	plex9.2 (ENSATEG00000021547)	ENSATEG00000021548	scamp2 (ENSATEG00000021561)	ENSATEG00000028756	ENSATEG00000021582	ENSATEG00000021623	hapln3 (ENSATEG00000021654)	mfge8b (ENSATEG00000021667)	ABHD2 (ENSATEG00000021685)	rlbp1b (ENSATEG00000021710)	ENSATEG00000021719
Siamese fighting fish	MODERN SPECIES	17	LINGO1 (ENSBSLG00000014115)	CSPG4 (ENSBSLG00000014130)	snx33 (ENSBSLG00000014224)	snupn (ENSBSLG00000014240)	PTPN9 (ENSBSLG00000014292)	sin3aa (ENSBSLG00000014533)	crabp1a (ENSBSLG00000014589)	skic8 (ENSBSLG00000014594)	slc25a44a (ENSBSLG00000014650)	IREB2 (ENSBSLG00000014731)	snx1a (ENSBSLG00000015130) #24	AP3B2 (ENSBSLG00000015673)	dnai4 (ENSBSLG00000019787)	ENSBSLG00000019825 #23	adpgk (ENSBSLG00000019838)	ppib (ENSBSLG00000019877) #22	OAZ2 (ENSBSLG00000019928) #15	psma4 (ENSBSLG00000019932)	myo9ab (ENSBSLG00000020020)	ENSBSLG00000020613	ENSBSLG00000020934	plex9.2 (ENSBSLG00000020977)	mpi (ENSBSLG00000021060)	scamp2 (ENSBSLG00000021138)	ENSBSLG00000021189	PTPRZ1 (ENSBSLG00000021340)	aass (ENSBSLG00000022247)	fezf1 (ENSBSLG00000022864)	CADPS2 (ENSBSLG00000023232)	slc13a1 (ENSBSLG00000025222)	IQUB (ENSBSLG00000025223)
Zig-zag eel	MODERN SPECIES	20	snupn (ENSMAMG00000024643)	PTPN9 (ENSMAMG00000023107)	sin3aa (ENSMAMG00000023103)	crabp1a (ENSMAMG00000023100)	skic8 (ENSMAMG00000023099)	slc25a44a (ENSMAMG00000023097)	ENSMAMG00000023095	ENSMAMG00000023090 #24	ENSMAMG00000003415	ENSMAMG00000023087	ENSMAMG00000023084	ENSMAMG00000024586	ENSMAMG00000023083	ENSMAMG00000023082 #23	ENSMAMG00000023081	ENSMAMG00000023080 #22	ENSMAMG00000027437 #15	ENSMAMG00000023077	ENSMAMG00000023076	ENSMAMG00000025509	plex9.2 (ENSMAMG00000028276)	ENSMAMG00000023072	scamp2 (ENSMAMG00000023071)	ENSMAMG00000024923	ENSMAMG00000023066	ENSMAMG00000023064	hapln3 (ENSMAMG00000023061)	mfge8b (ENSMAMG00000023060)	ABHD2 (ENSMAMG00000023059)	rlbp1b (ENSMAMG00000023058)	ENSMAMG00000023057
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00940000155425
Tongue sole	MODERN SPECIES	16	tnni2a.2 (ENSCSEG00000002138)	tnni2a.1 (ENSCSEG00000002133)	ENSCSEG00000002121	septin15 (ENSCSEG00000002096)	ENSCSEG00000002089	smpd3 (ENSCSEG00000002076)	ENSCSEG00000002072	ENSCSEG00000002069	ANO1 (ENSCSEG00000002014)	ENSCSEG00000002001	KIF21A (ENSCSEG00000001988)	ENSCSEG00000001985	exoc3l1 (ENSCSEG00000001976)	ENSCSEG00000001946	adpgk (ENSCSEG00000001935)	ppib (ENSCSEG00000001927) #22	OAZ2 (ENSCSEG00000001923) #15	psma4 (ENSCSEG00000001918)	myo9ab (ENSCSEG00000001887)	plex9.2 (ENSCSEG00000001884)	mpi (ENSCSEG00000001876)	scamp2 (ENSCSEG00000001867)	ENSCSEG00000001832	ENSCSEG00000001823	ENSCSEG00000001817	ENSCSEG00000001794	GLG1 (ENSCSEG00000001778)	RFWD3 (ENSCSEG00000001774)	MLKL (ENSCSEG00000001761)	TMED6 (ENSCSEG00000001758)	ANKRD27 (ENSCSEG00000001753)
Turbot	MODERN SPECIES	1	sin3aa (ENSSMAG00000005565)	PTPN9 (ENSSMAG00000005512)	snupn (ENSSMAG00000005485)	snx33 (ENSSMAG00000005503)	CSPG4 (ENSSMAG00000005466)	ENSSMAG00000002801	ENSSMAG00000005459	hmg20a (ENSSMAG00000005454)	ENSSMAG00000005439	ENSSMAG00000005416	syt12 (ENSSMAG00000005389)	cat (ENSSMAG00000005331)	ENSSMAG00000005199	ENSSMAG00000005169 #23	ENSSMAG00000005148	ENSSMAG00000005130 #22	ENSSMAG00000033066 #15	ENSSMAG00000005090	ENSSMAG00000004881	ENSSMAG00000030933	ENSSMAG00000004852	ENSSMAG00000004814	ENSSMAG00000004794	ENSSMAG00000004747	hapln3 (ENSSMAG00000004654)	mfge8b (ENSSMAG00000004623)	ABHD2 (ENSSMAG00000004568)	rlbp1b (ENSSMAG00000004552)	ENSSMAG00000004520	pdia3 (ENSSMAG00000004475)	ENSSMAG00000004451
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000012715.f	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	65	PTPN9 (ENSLCAG00010006676)	ENSLCAG00010006669	sin3aa (ENSLCAG00010006234)	crabp1a (ENSLCAG00010006144)	skic8 (ENSLCAG00010006016)	slc25a44a (ENSLCAG00010006001)	IREB2 (ENSLCAG00010004786)	snx1a (ENSLCAG00010004324) #24	ENSLCAG00010004291	AP3B2 (ENSLCAG00010003695)	dnai4 (ENSLCAG00010003594)	snx22 (ENSLCAG00010003593) #23	ENSLCAG00010003591	ENSLCAG00010003589	adpgk (ENSLCAG00010003588)	ppib (ENSLCAG00010003583) #22	OAZ2 (ENSLCAG00010003581) #15	psma4 (ENSLCAG00010003571)	myo9ab (ENSLCAG00010003504)	ENSLCAG00010003472	plex9.2 (ENSLCAG00010003471)	mpi (ENSLCAG00010003465)	scamp2 (ENSLCAG00010003457)	ENSLCAG00010003454	ENSLCAG00010003449	TMBIM6 (ENSLCAG00010003441)	ctdsp2 (ENSLCAG00010003433)	SLC11A2 (ENSLCAG00010003336)	MARCHF9 (ENSLCAG00010003310)	tspan31 (ENSLCAG00010003306)	agap2 (ENSLCAG00010003296)
Barramundi perch	MODERN SPECIES	1386																ENSLCAG00010019108 #22
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000182176	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00940000155889.d #24	ENSGT00950000182940.a	ENSGT00940000156817	ENSGT00940000156209.v.b	ENSGT00390000001280.a #23	ENSGT00390000017953.A	ENSGT00940000158007 #22	ENSGT00940000157725 #15	ENSGT00550000074827.fb	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.c	ENSGT00940000164526.b	ENSGT00940000160781
Greater amberjack	MODERN SPECIES	86	snupn (ENSSDUG00000023461)	PTPN9 (ENSSDUG00000023463)	sin3aa (ENSSDUG00000023467)	ENSSDUG00000023472	crabp1a (ENSSDUG00000023473)	skic8 (ENSSDUG00000023475)	slc25a44a (ENSSDUG00000023478)	ENSSDUG00000023481	IREB2 (ENSSDUG00000023484)	snx1a (ENSSDUG00000023488) #24	ENSSDUG00000023491	AP3B2 (ENSSDUG00000023496)	dnai4 (ENSSDUG00000023503)	ENSSDUG00000023509 #23	adpgk (ENSSDUG00000023511)	ppib (ENSSDUG00000023515) #22	OAZ2 (ENSSDUG00000023517) #15	psma4 (ENSSDUG00000023519)	myo9ab (ENSSDUG00000023523)	mpi (ENSSDUG00000023554)	scamp2 (ENSSDUG00000023562)	ENSSDUG00000023569	PPIP5K1 (ENSSDUG00000023574)	ENSSDUG00000023584	ENSSDUG00000000103	hapln3 (ENSSDUG00000000223)	mfge8b (ENSSDUG00000000258)	ABHD2 (ENSSDUG00000000276)	rlbp1b (ENSSDUG00000000340)	ENSSDUG00000000366	pdia3 (ENSSDUG00000000376)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2263	snx33 (ENSSLDG00000001408)	snupn (ENSSLDG00000001425)	PTPN9 (ENSSLDG00000001462)	sin3aa (ENSSLDG00000001568)	ENSSLDG00000001584	crabp1a (ENSSLDG00000001592)	skic8 (ENSSLDG00000001624)	slc25a44a (ENSSLDG00000001671)	IREB2 (ENSSLDG00000001705)	snx1a (ENSSLDG00000001797) #24	ENSSLDG00000001802	AP3B2 (ENSSLDG00000001861)	dnai4 (ENSSLDG00000002067)	snx22 (ENSSLDG00000002117) #23	adpgk (ENSSLDG00000002134)	ppib (ENSSLDG00000002168) #22	OAZ2 (ENSSLDG00000002187) #15	psma4 (ENSSLDG00000002201)	myo9ab (ENSSLDG00000002238)	ENSSLDG00000002379	mpi (ENSSLDG00000002394)	scamp2 (ENSSLDG00000002442)	ENSSLDG00000002488	PPIP5K1 (ENSSLDG00000002528)	ENSSLDG00000002644	ACAN (ENSSLDG00000002666)	ENSSLDG00000002693	hapln3 (ENSSLDG00000002718)	mfge8b (ENSSLDG00000002751)	ABHD2 (ENSSLDG00000002803)	rlbp1b (ENSSLDG00000002849)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	1209																ENSSLDG00000007495 #22
Yellowtail amberjack	MODERN SPECIES	541																ENSSLDG00000002524 #22
Elephant shark	MODERN SPECIES	1490	gdpgp1 (ENSCMIG00000009331)	ENSCMIG00000009332	unc45a (ENSCMIG00000009445)	MAN2A2 (ENSCMIG00000009751)	fes (ENSCMIG00000009820)	furina (ENSCMIG00000009871)	mfap1 (ENSCMIG00000010043)	hypk (ENSCMIG00000010045)	SERINC4 (ENSCMIG00000010048)	ENSCMIG00000010050	ENSCMIG00000010052	iqgap1 (ENSCMIG00000010076)	myo9aa (ENSCMIG00000010174)	nr2e3 (ENSCMIG00000010242)	lingo1b (ENSCMIG00000010268)	ppib (ENSCMIG00000010270) #22	ENSCMIG00000010282 #23	snx1a (ENSCMIG00000010353) #24	snx33 (ENSCMIG00000010521)	ENSCMIG00000010523	arih1 (ENSCMIG00000010538)	bbs4 (ENSCMIG00000010569)	neo1a (ENSCMIG00000010643)	adpgk (ENSCMIG00000010709)	GCNT3 (ENSCMIG00000010725)	OTUD7A (ENSCMIG00000010728)	ENSCMIG00000010735	trpm1b (ENSCMIG00000010758)	mtmr10 (ENSCMIG00000010853)	fan1 (ENSCMIG00000010870)	mphosph10 (ENSCMIG00000010890)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000158007 #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	250												ENSEBUG00000010608	csnk1g1 (ENSEBUG00000015621) #21	ENSEBUG00000002718	PRDM6 (ENSEBUG00000008559)	ENSEBUG00000004760 #22	ENSEBUG00000013042	ENSEBUG00000005029 #23	snx1a (ENSEBUG00000016069) #24	ENSEBUG00000008021	ENSEBUG00000008790	ENSEBUG00000000366	ENSEBUG00000016739	ENSEBUG00000011227	LINGO2 (ENSEBUG00000001645)	ENSEBUG00000007687	ENSEBUG00000004807	ENSEBUG00000014992	ENSEBUG00000011130	ATP2C1 (ENSEBUG00000017043)	ENSEBUG00000003509
Hagfish	MODERN SPECIES	6	ENSEBUG00000001798	pde6d (ENSEBUG00000000465)	ENSEBUG00000012331	ENSEBUG00000008953	ENSEBUG00000015437	ENSEBUG00000016128	ENSEBUG00000007698	dhrs3b (ENSEBUG00000005457)	FLAD1 (ENSEBUG00000010115)	LONP1 (ENSEBUG00000008224)	ENSEBUG00000013211	snrnp35 (ENSEBUG00000003535)	ENSEBUG00000011301	ENSEBUG00000011255	mfsd12a (ENSEBUG00000008951)	ENSEBUG00000006148 #22	ENSEBUG00000008981	ENSEBUG00000007737	fam219ab (ENSEBUG00000011992)	ENSEBUG00000011313	ENSEBUG00000008925	ENSEBUG00000002681	lsm7 (ENSEBUG00000016992)	isoc1 (ENSEBUG00000011815)	timm44 (ENSEBUG00000005387)	ENSEBUG00000014247