Murinae	ANCESTRAL SPECIES	1	ENSGT00940000154632 #9	ENSGT00390000003349 #10	ENSGT00940000159359 #11	ENSGT00520000059926 #13	ENSGT00390000001146 #12	ENSGT00940000162260	ENSGT00390000000549 #14	ENSGT00390000009679 #15	ENSGT00390000014861 #16	ENSGT00390000006916.c #17	ENSGT00860000134050 #18	ENSGT00940000153431.b #19	ENSGT00940000154327.b.e.b	ENSGT01030000234532.A.a.a.b #20	ENSGT00940000154866.B #21	ENSGT00550000075046 #22	ENSGT00550000074931 #23	ENSGT00390000004987 #24	ENSGT00940000162552 #25	ENSGT00950000183139.A #26	ENSGT00390000010121 #27	ENSGT00670000098098 #29	ENSGT00940000162247 #30	ENSGT00940000159727 #31	ENSGT00940000159137 #32	ENSGT00940000155999 #33	ENSGT00940000156819.a.a #34	ENSGT00940000163276 #35	ENSGT00940000156996 #36	ENSGT00940000162041 #37	ENSGT00870000136554
Mus	ANCESTRAL SPECIES	1	ENSGT00940000162003 #8	ENSGT00940000154632 #9	ENSGT00390000003349 #10	ENSGT00940000159359 #11	ENSGT00520000059926 #13	ENSGT00390000001146 #12	ENSGT00390000000549 #14	ENSGT00390000009679 #15	ENSGT00390000014861 #16	ENSGT00390000006916.c #17	ENSGT00860000134050 #18	ENSGT00940000153431.b #19	ENSGT00940000154327.b.e.b	ENSGT01030000234532.A.a.a.b #20	ENSGT00940000154866.B #21	ENSGT00550000075046 #22	ENSGT00550000074931 #23	ENSGT00390000004987 #24	ENSGT00940000162552 #25	ENSGT00950000183139.A #26	ENSGT00390000010121 #27	ENSGT00670000098098 #29	ENSGT00940000162247 #30	ENSGT00940000159727 #31	ENSGT00940000159137 #32	ENSGT00940000155999 #33	ENSGT00940000156819.a.a #34	ENSGT00940000163276 #35	ENSGT00940000156996 #36	ENSGT00940000162041 #37	ENSGT00870000136554
Mus_A	ANCESTRAL SPECIES		ENSGT00940000162003 #8	ENSGT00940000154632 #9	ENSGT00390000003349 #10	ENSGT00940000159359 #11	ENSGT00520000059926 #13	ENSGT00390000001146 #12	ENSGT00390000000549 #14	ENSGT00390000009679 #15	ENSGT00390000014861 #16	ENSGT00390000006916.c.c #17	ENSGT00860000134050 #18	ENSGT00940000153431.b #19	ENSGT00940000154327.b.e.b	ENSGT01030000234532.A.a.a.b #20	ENSGT00940000154866.B #21	ENSGT00550000075046 #22	ENSGT00550000074931.m #23	ENSGT00390000004987 #24	ENSGT00940000162552 #25	ENSGT00950000183139.A #26	ENSGT00390000010121 #27	ENSGT00970000195442 #28	ENSGT00670000098098 #29	ENSGT00940000162247 #30	ENSGT00940000159727 #31	ENSGT00940000159137 #32	ENSGT00940000155999 #33	ENSGT00940000156819.a.a #34	ENSGT00940000163276 #35	ENSGT00940000156996 #36	ENSGT00940000162041 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000162003 #8	ENSGT00940000154632 #9	ENSGT00390000003349 #10	ENSGT00940000159359 #11	ENSGT00520000059926 #13	ENSGT00390000001146 #12	ENSGT00390000000549 #14	ENSGT00390000009679 #15	ENSGT00390000014861 #16	ENSGT00390000006916.c.c #17	ENSGT00860000134050 #18	ENSGT00940000153431.b #19	ENSGT00940000154327.b.e.b	ENSGT01030000234532.A.a.a.b #20	ENSGT00940000154866.B #21	ENSGT00550000075046 #22	ENSGT00550000074931.m #23	ENSGT00390000004987 #24	ENSGT00940000162552 #25	ENSGT00950000183139.A #26	ENSGT00390000010121 #27	ENSGT00970000195442 #28	ENSGT00670000098098 #29	ENSGT00940000162247 #30	ENSGT00940000159727 #31	ENSGT00940000159137 #32	ENSGT00940000155999 #33	ENSGT00940000156819.a.a #34	ENSGT00940000163276 #35	ENSGT00940000156996 #36	ENSGT00940000162041 #37
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158015 #7	ENSGT00940000162003 #8	ENSGT00940000154632 #9	ENSGT00390000003349 #10	ENSGT00940000159359 #11	ENSGT00520000059926 #13	ENSGT00390000001146 #12	ENSGT00390000000549 #14	ENSGT00390000009679 #15	ENSGT00390000014861 #16	ENSGT00390000006916.c.c #17	ENSGT00860000134050 #18	ENSGT00940000153431.b #19	ENSGT01030000234532.A.a.a.b #20	ENSGT00940000154866.B #21	ENSGT00550000075046 #22	ENSGT00550000074931.m #23	ENSGT00390000004987 #24	ENSGT00940000162552 #25	ENSGT00950000183139.A #26	ENSGT00390000010121 #27	ENSGT00970000195442 #28	ENSGT00670000098098 #29	ENSGT00940000162247 #30	ENSGT00940000159727 #31	ENSGT00940000159137 #32	ENSGT00940000155999 #33	ENSGT00940000156819.a.a #34	ENSGT00940000163276 #35	ENSGT00940000156996 #36	ENSGT00940000162041 #37
spretus	MODERN SPECIES	11	Rrbp1 (MGP_SPRETEiJ_G0025296) #7	Banf2 (MGP_SPRETEiJ_G0025297) #8	Snx5 (MGP_SPRETEiJ_G0025298) #9	Mgme1 (MGP_SPRETEiJ_G0025299) #10	Ovol2 (MGP_SPRETEiJ_G0025300) #11	Kat14 (MGP_SPRETEiJ_G0025301) #12	Pet117 (MGP_SPRETEiJ_G0025302) #13	Dzank1 (MGP_SPRETEiJ_G0025303) #14	Polr3f (MGP_SPRETEiJ_G0025304) #15	Rbbp9 (MGP_SPRETEiJ_G0025305) #16	Sec23b (MGP_SPRETEiJ_G0025306) #17	Smim26 (MGP_SPRETEiJ_G0025307) #18	Dtd1 (MGP_SPRETEiJ_G0025308) #19	Slc24a3 (MGP_SPRETEiJ_G0025309) #20	Rin2 (MGP_SPRETEiJ_G0025310) #21	Naa20 (MGP_SPRETEiJ_G0025311) #22	Crnkl1 (MGP_SPRETEiJ_G0025312) #23	Cfap61 (MGP_SPRETEiJ_G0025313) #24	Insm1 (MGP_SPRETEiJ_G0025314) #25	Ralgapa2 (MGP_SPRETEiJ_G0025315) #26	Kiz (MGP_SPRETEiJ_G0025316) #27	MGP_SPRETEiJ_G0025317 #28	Xrn2 (MGP_SPRETEiJ_G0025318) #29	Nkx2-4 (MGP_SPRETEiJ_G0025319) #30	Nkx2-2 (MGP_SPRETEiJ_G0025320) #31	Pax1 (MGP_SPRETEiJ_G0025321) #32	Foxa2 (MGP_SPRETEiJ_G0025322) #33	Sstr4 (MGP_SPRETEiJ_G0025323) #34	Thbd (MGP_SPRETEiJ_G0025324) #35	Cd93 (MGP_SPRETEiJ_G0025325) #36	Nxt1 (MGP_SPRETEiJ_G0025326) #37
Steppe mouse	MODERN SPECIES	17												ENSMSIG00000013826	Slc24a3 (ENSMSIG00000013851) #20	ENSMSIG00000014037	Rin2 (ENSMSIG00000014047) #21	Naa20 (ENSMSIG00000014125) #22	Crnkl1 (ENSMSIG00000014156) #23	Cfap61 (ENSMSIG00000014190) #24	ENSMSIG00000014314 #25	Ralgapa2 (ENSMSIG00000014327) #26	Kiz (ENSMSIG00000014848) #27	Xrn2 (ENSMSIG00000014908) #29	Nkx2-4 (ENSMSIG00000015047) #30	ENSMSIG00000015060 #31	ENSMSIG00000015077	Pax1 (ENSMSIG00000015104) #32
Mouse	MODERN SPECIES	11	Banf2 (ENSMUSG00000037307) #8	Snx5 (ENSMUSG00000027423) #9	Mgme1 (ENSMUSG00000027424) #10	Ovol2 (ENSMUSG00000037279) #11	Kat14 (ENSMUSG00000027425) #12	Pet117 (ENSMUSG00000098387) #13	Dzank1 (ENSMUSG00000037259) #14	Polr3f (ENSMUSG00000027427) #15	Rbbp9 (ENSMUSG00000027428) #16	Sec23b (ENSMUSG00000027429) #17	Smim26 (ENSMUSG00000074754) #18	Dtd1 (ENSMUSG00000027430) #19	Scp2d1 (ENSMUSG00000027431)	Slc24a3 (ENSMUSG00000063873) #20	Rin2 (ENSMUSG00000001768) #21	Naa20 (ENSMUSG00000002728) #22	Crnkl1 (ENSMUSG00000001767) #23	Cfap61 (ENSMUSG00000037143) #24	Insm1 (ENSMUSG00000068154) #25	Ralgapa2 (ENSMUSG00000037110) #26	Kiz (ENSMUSG00000074749) #27	Xrn2 (ENSMUSG00000027433) #29	Nkx2-4 (ENSMUSG00000054160) #30	Nkx2-2 (ENSMUSG00000027434) #31	Pax1 (ENSMUSG00000037034) #32	Foxa2 (ENSMUSG00000037025) #33	Sstr4 (ENSMUSG00000037014) #34	Thbd (ENSMUSG00000074743) #35	Cd93 (ENSMUSG00000027435) #36	Nxt1 (ENSMUSG00000036992) #37	Gzf1 (ENSMUSG00000027439)
Ryukyu mouse	MODERN SPECIES	11	Banf2 (MGP_CAROLIEiJ_G0024378) #8	Snx5 (MGP_CAROLIEiJ_G0024379) #9	Mgme1 (MGP_CAROLIEiJ_G0024380) #10	Ovol2 (MGP_CAROLIEiJ_G0024381) #11	Kat14 (MGP_CAROLIEiJ_G0024382) #12	Pet117 (MGP_CAROLIEiJ_G0024383) #13	Dzank1 (MGP_CAROLIEiJ_G0024384) #14	Polr3f (MGP_CAROLIEiJ_G0024385) #15	Rbbp9 (MGP_CAROLIEiJ_G0024386) #16	Sec23b (MGP_CAROLIEiJ_G0024387) #17	Smim26 (MGP_CAROLIEiJ_G0024388) #18	Dtd1 (MGP_CAROLIEiJ_G0024389) #19	Scp2d1 (MGP_CAROLIEiJ_G0024390)	MGP_CAROLIEiJ_G0024391 #20	Rin2 (MGP_CAROLIEiJ_G0024392) #21	Naa20 (MGP_CAROLIEiJ_G0024393) #22	Crnkl1 (MGP_CAROLIEiJ_G0024394) #23	Cfap61 (MGP_CAROLIEiJ_G0024395) #24	Insm1 (MGP_CAROLIEiJ_G0024396) #25	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #26	Kiz (MGP_CAROLIEiJ_G0024398) #27	MGP_CAROLIEiJ_G0024399 #28	Xrn2 (MGP_CAROLIEiJ_G0024400) #29	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #30	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #31	Pax1 (MGP_CAROLIEiJ_G0024403) #32	Foxa2 (MGP_CAROLIEiJ_G0024404) #33	Sstr4 (MGP_CAROLIEiJ_G0024405) #34	Thbd (MGP_CAROLIEiJ_G0024406) #35	Cd93 (MGP_CAROLIEiJ_G0024407) #36	Nxt1 (MGP_CAROLIEiJ_G0024408) #37
Shrew mouse	MODERN SPECIES	16	Banf2 (MGP_PahariEiJ_G0025822) #8	Snx5 (MGP_PahariEiJ_G0025823) #9	Mgme1 (MGP_PahariEiJ_G0025824) #10	Ovol2 (MGP_PahariEiJ_G0025825) #11	Kat14 (MGP_PahariEiJ_G0025826) #12	Pet117 (MGP_PahariEiJ_G0025827) #13	Dzank1 (MGP_PahariEiJ_G0025828) #14	Polr3f (MGP_PahariEiJ_G0025829) #15	Rbbp9 (MGP_PahariEiJ_G0025830) #16	Sec23b (MGP_PahariEiJ_G0025831) #17	Smim26 (MGP_PahariEiJ_G0025832) #18	Dtd1 (MGP_PahariEiJ_G0025833) #19	Scp2d1 (MGP_PahariEiJ_G0025834)	MGP_PahariEiJ_G0025835 #20	Rin2 (MGP_PahariEiJ_G0025836) #21	Naa20 (MGP_PahariEiJ_G0025837) #22	Crnkl1 (MGP_PahariEiJ_G0025838) #23	Cfap61 (MGP_PahariEiJ_G0025839) #24	Insm1 (MGP_PahariEiJ_G0025840) #25	Ralgapa2 (MGP_PahariEiJ_G0025841) #26	Kiz (MGP_PahariEiJ_G0025842) #27	Xrn2 (MGP_PahariEiJ_G0025843) #29	Nkx2-4 (MGP_PahariEiJ_G0025844) #30	Nkx2-2 (MGP_PahariEiJ_G0025845) #31	Pax1 (MGP_PahariEiJ_G0025846) #32	Foxa2 (MGP_PahariEiJ_G0025847) #33	Sstr4 (MGP_PahariEiJ_G0025848) #34	Thbd (MGP_PahariEiJ_G0025849) #35	Cd93 (MGP_PahariEiJ_G0025850) #36	Nxt1 (MGP_PahariEiJ_G0025851) #37	Gzf1 (MGP_PahariEiJ_G0025852)
Rat	MODERN SPECIES	13	Banf2 (ENSRNOG00000006032) #8	Snx5 (ENSRNOG00000006077) #9	Mgme1 (ENSRNOG00000028196) #10	Ovol2 (ENSRNOG00000006850) #11	Kat14 (ENSRNOG00000007160) #12	Zfp133 (ENSRNOG00000027955)	Dzank1 (ENSRNOG00000007440) #14	Polr3f (ENSRNOG00000007548) #15	Rbbp9 (ENSRNOG00000007972) #16	Sec23b (ENSRNOG00000008411) #17	Smim26 (ENSRNOG00000036971) #18	Dtd1 (ENSRNOG00000008746) #19	Scp2d1 (ENSRNOG00000009461)	Slc24a3 (ENSRNOG00000060687) #20	Rin2 (ENSRNOG00000010131) #21	Naa20 (ENSRNOG00000010523) #22	Crnkl1 (ENSRNOG00000010587) #23	AABR07054096.1 (ENSRNOG00000011028) #24	Insm1 (ENSRNOG00000068937) #25	Ralgapa2 (ENSRNOG00000036964) #26	ENSRNOG00000070752	Kiz (ENSRNOG00000025141) #27	Xrn2 (ENSRNOG00000011785) #29	Nkx2-4 (ENSRNOG00000012647) #30	Nkx2-2 (ENSRNOG00000012728) #31	Pax1 (ENSRNOG00000024882) #32	Foxa2 (ENSRNOG00000013133) #33	Sstr4 (ENSRNOG00000004641) #34	Thbd (ENSRNOG00000004687) #35	Cd93 (ENSRNOG00000024799) #36	Nxt1 (ENSRNOG00000004700) #37