Clupeocephala	ANCESTRAL SPECIES	26	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a #14	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535
Euteleosteomorpha	ANCESTRAL SPECIES	38	ENSGT00940000155905.a	ENSGT00940000155128.a.b.a.b	ENSGT00950000183040.A.b.g	ENSGT00390000000973.a.b	ENSGT00940000164052	ENSGT00510000046787.e.a #14	ENSGT00940000182397	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000156223	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684
Acanthomorphata	ANCESTRAL SPECIES	80	ENSGT00730000110920.b.a.b #7	ENSGT01100000265707	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000166330	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT01100000265707	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00940000178602	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT01100000265707	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00940000178602	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00740000115955.D #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00730000110920.b.a.b #7	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00740000115955.D #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00950000183052.b.c.b.b.b.a.b.b.a.b.a	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00740000115955.D #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00950000183052.b.c.b.b.b.a.b.b.a.b.a	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000182429	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00740000115955.D #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Amazon molly	MODERN SPECIES	296	ENSPFOG00000005019 #13	sparcl1 (ENSPFOG00000005061) #14	dnaja1 (ENSPFOG00000005099) #11	aptx (ENSPFOG00000005131) #12	ENSPFOG00000023226 #13	sparcl1 (ENSPFOG00000005161) #14	ENSPFOG00000024459	odam (ENSPFOG00000005258) #15	ENSPFOG00000005315	scpp5 (ENSPFOG00000005320) #16	cnga1a (ENSPFOG00000005330) #17	ENSPFOG00000005374	bdh2 (ENSPFOG00000022157) #19	ENSPFOG00000005436 #20	cisd2 (ENSPFOG00000005678) #21	suclg1 (ENSPFOG00000005681) #22	ENSPFOG00000020386	ctnna2 (ENSPFOG00000005755) #24	LRRTM1 (ENSPFOG00000020387) #23	ENSPFOG00000005837 #24	ADRA1D (ENSPFOG00000005849) #25	ENSPFOG00000020388 #26	ENSPFOG00000022092 #27	mettl14 (ENSPFOG00000005875) #28	PRSS12 (ENSPFOG00000005977) #29	ENSPFOG00000006177 #30	ugt8 (ENSPFOG00000006587) #31	spock3 (ENSPFOG00000006689) #32	SLC44A1 (ENSPFOG00000006837) #33	DLC1 (ENSPFOG00000007028) #35	ENSPFOG00000007312 #36
Sailfin molly	MODERN SPECIES	369										ENSPLAG00000004553	cnga1a (ENSPLAG00000004572) #17	TACR3 (ENSPLAG00000005184) #18	bdh2 (ENSPLAG00000005242) #19	ENSPLAG00000005253 #20	cisd2 (ENSPLAG00000005275) #21	suclg1 (ENSPLAG00000005308) #22	mtnr1al (ENSPLAG00000005810)	FAT2 (ENSPLAG00000005915)	lman2 (ENSPLAG00000005935)
Guppy	MODERN SPECIES	439	ppp2r2ca (ENSPREG00000010056)	hpf1 (ENSPREG00000010038)	ANK2 (ENSPREG00000009960)	camk2d2 (ENSPREG00000009806)	ENSPREG00000009575	ENSPREG00000009499	FBXO10 (ENSPREG00000009485)	polr1e (ENSPREG00000009470)	ENSPREG00000009458	ENSPREG00000009437	cnga1a (ENSPREG00000009416) #17	ENSPREG00000009400	bdh2 (ENSPREG00000009365) #19	ENSPREG00000009342 #20	cisd2 (ENSPREG00000009328) #21	suclg1 (ENSPREG00000009291) #22	LRRTM1 (ENSPREG00000009276) #23	ENSPREG00000009264	ctnna2 (ENSPREG00000009171) #24	ADRA1D (ENSPREG00000009126) #25	ENSPREG00000009111 #26	mettl14 (ENSPREG00000009092) #28	PRSS12 (ENSPREG00000009070) #29	ENSPREG00000009037 #30	ugt8 (ENSPREG00000008999) #31	spock3 (ENSPREG00000008964) #32	SLC44A1 (ENSPREG00000008914) #33	DLC1 (ENSPREG00000008816) #35	ENSPREG00000008770 #36	ENSPREG00000008744 #37	doc2d (ENSPREG00000008728)
Platyfish	MODERN SPECIES	19	ACER2 (ENSXMAG00000005820) #7	rps6 (ENSXMAG00000005833) #9	ENSXMAG00000005840	SMU1 (ENSXMAG00000005844) #10	dnaja1 (ENSXMAG00000005855) #11	aptx (ENSXMAG00000022086) #12	sparcl1 (ENSXMAG00000005879) #14	odam (ENSXMAG00000005905) #15	ENSXMAG00000028631	scpp5 (ENSXMAG00000028166) #16	cnga1a (ENSXMAG00000005912) #17	ENSXMAG00000025288	bdh2 (ENSXMAG00000025338) #19	ENSXMAG00000005936 #20	cisd2 (ENSXMAG00000005961) #21	suclg1 (ENSXMAG00000005966) #22	ENSXMAG00000023963	LRRTM1 (ENSXMAG00000020008) #23	ctnna2 (ENSXMAG00000004800) #24	ADRA1D (ENSXMAG00000004797) #25	ENSXMAG00000020007 #26	ENSXMAG00000026999	ENSXMAG00000024313	mettl14 (ENSXMAG00000017846) #28	PRSS12 (ENSXMAG00000017835) #29	ENSXMAG00000017808 #30	ugt8 (ENSXMAG00000023571) #31	spock3 (ENSXMAG00000024327) #32	SLC44A1 (ENSXMAG00000016107) #33	DLC1 (ENSXMAG00000009985) #35	LONRF1 (ENSXMAG00000009974) #36
NAME_4	ANCESTRAL SPECIES	70										ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345	ENSGT00940000159681
Mummichog	MODERN SPECIES	2393											cnga1a (ENSFHEG00000007661) #17	ENSFHEG00000007690	bdh2 (ENSFHEG00000007715) #19	ENSFHEG00000007771 #20	cisd2 (ENSFHEG00000007789) #21	suclg1 (ENSFHEG00000007812) #22	LRRTM1 (ENSFHEG00000007822) #23	ctnna2 (ENSFHEG00000007867) #24
Sheepshead minnow	MODERN SPECIES	987										scpp5 (ENSCVAG00000013306) #16	cnga1a (ENSCVAG00000013294) #17	TACR3 (ENSCVAG00000013180) #18	bdh2 (ENSCVAG00000013164) #19	ENSCVAG00000013145 #20	cisd2 (ENSCVAG00000013109) #21	suclg1 (ENSCVAG00000013094) #22
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b #7	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Turquoise killifish	MODERN SPECIES	1611	PLIN1 (ENSNFUG00015001701)	SMU1 (ENSNFUG00015001675) #10	DNAJA1L (ENSNFUG00015001639) #11	APTX (ENSNFUG00015001623) #12	ENSNFUG00015001619	SPARCL1 (ENSNFUG00015001609) #14	odam (ENSNFUG00015001604) #15	ENSNFUG00015001584	ENSNFUG00015001575	cnga1a (ENSNFUG00015001567) #17	ENSNFUG00015001562	TACR3 (ENSNFUG00015001541) #18	bdh2 (ENSNFUG00015001532) #19	SLC9B2 (ENSNFUG00015001499) #20	CISD2 (ENSNFUG00015001471) #21	SUCLG1 (ENSNFUG00015001449) #22	ENSNFUG00015001443	ENSNFUG00015001440	ENSNFUG00015001439	LRRTM1 (ENSNFUG00015001436) #23	ctnna2 (ENSNFUG00015001311) #24	ADRA1D (ENSNFUG00015001279) #25	ENSNFUG00015001275 #26	ENSNFUG00015001269	mettl14 (ENSNFUG00015001255) #28	ENSNFUG00015001248 #29	ENSNFUG00015001191	lpin1a (ENSNFUG00015001104)	ENSNFUG00015001059	C11ORF82 (ENSNFUG00015001056)	ENSNFUG00015001052
Mangrove rivulus	MODERN SPECIES		ACER2 (ENSKMAG00000000123) #7	rps6 (ENSKMAG00000000122) #9	ENSKMAG00000000121	spag6 (ENSKMAG00000000120)	SMU1 (ENSKMAG00000000119) #10	dnaja1 (ENSKMAG00000000118) #11	aptx (ENSKMAG00000000117) #12	ENSKMAG00000000116 #14	odam (ENSKMAG00000000115) #15	scpp5 (ENSKMAG00000000114) #16	cnga1a (ENSKMAG00000000113) #17	TACR3 (ENSKMAG00000000112) #18	bdh2 (ENSKMAG00000000111) #19	ENSKMAG00000000110 #20	cisd2 (ENSKMAG00000000109) #21	suclg1 (ENSKMAG00000000108) #22	LRRTM1 (ENSKMAG00000000107) #23	ctnna2 (ENSKMAG00000000106) #24	ADRA1D (ENSKMAG00000000105) #25	ENSKMAG00000000104 #26	mettl14 (ENSKMAG00000000103) #28	PRSS12 (ENSKMAG00000000102) #29	ENSKMAG00000000101 #30	ugt8 (ENSKMAG00000000100) #31	spock3 (ENSKMAG00000000099) #32	SLC44A1 (ENSKMAG00000000098) #33	DLC1 (ENSKMAG00000000097) #35	ENSKMAG00000000096 #36	ENSKMAG00000000095 #37	doc2d (ENSKMAG00000000094)	serping1 (ENSKMAG00000000093)
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000166330	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345	ENSGT00940000159681
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000166330	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345	ENSGT00940000159681
Japanese Medaka HdrR	MODERN SPECIES		SMU1 (ENSORLG00000006283) #10	dnaja1 (ENSORLG00000006260) #11	aptx (ENSORLG00000006237) #12	ENSORLG00000006212 #13	sparcl1 (ENSORLG00000006207) #14	odam (ENSORLG00000006190) #15	scpp5 (ENSORLG00000019321) #16	cnga1a (ENSORLG00000024168) #17	tacr3a (ENSORLG00000006145) #18	bdh2 (ENSORLG00000006131) #19	ENSORLG00000025365	ENSORLG00000023021	bdh2 (ENSORLG00000025911) #19	ENSORLG00000006118 #20	cisd2 (ENSORLG00000006106) #21	SUCLG1 (ENSORLG00000006097) #22	LRRTM1 (ENSORLG00000024732) #23	ctnna2 (ENSORLG00000026159) #24	ADRA1D (ENSORLG00000006056) #25	ENSORLG00000019804 #26	mettl14 (ENSORLG00000006053) #28	PRSS12 (ENSORLG00000022161) #29	ENSORLG00000006029 #30	ENSORLG00000023982	ugt8 (ENSORLG00000005985) #31	spock3 (ENSORLG00000005978) #32	ENSORLG00000005967	DLC1 (ENSORLG00000005951) #35	ENSORLG00000005932 #36	ENSORLG00000005922 #37	doc2d (ENSORLG00000023518)
Chinese medaka	MODERN SPECIES	188										scpp5 (ENSOSIG00000011970) #16	cnga1a (ENSOSIG00000011967) #17	TACR3 (ENSOSIG00000011949) #18	bdh2 (ENSOSIG00000011630) #19	SLC9B2 (ENSOSIG00000011519) #20	cisd2 (ENSOSIG00000011517) #21	suclg1 (ENSOSIG00000011516) #22	LRRTM1 (ENSOSIG00000011513) #23	ctnna2 (ENSOSIG00000011480) #24	ADRA1D (ENSOSIG00000011473) #25	ENSOSIG00000011472 #26
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00940000178602	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000179599	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000166330	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345	ENSGT00940000159681
Javanese ricefish	MODERN SPECIES		rfc1 (ENSOJAG00000007986)	rpl9 (ENSOJAG00000007821)	lias (ENSOJAG00000007221)	ugdh (ENSOJAG00000007134)	ENSOJAG00000007113	smim14 (ENSOJAG00000007106)	ufsp2 (ENSOJAG00000007001)	gucy1a1 (ENSOJAG00000006979)	gucy1b1 (ENSOJAG00000006885)	scpp5 (ENSOJAG00000006867) #16	cnga1a (ENSOJAG00000006670) #17	TACR3 (ENSOJAG00000006521) #18	bdh2 (ENSOJAG00000006318) #19	ENSOJAG00000006236 #20	cisd2 (ENSOJAG00000006198) #21	SUCLG1 (ENSOJAG00000005909) #22	ENSOJAG00000005843	LRRTM1 (ENSOJAG00000005833) #23	ctnna2 (ENSOJAG00000005205) #24	ADRA1D (ENSOJAG00000005139) #25	ENSOJAG00000005127 #26	mettl14 (ENSOJAG00000005079) #28	PRSS12 (ENSOJAG00000005001) #29	ENSOJAG00000003664 #30	ugt8 (ENSOJAG00000003486) #31	spock3 (ENSOJAG00000003474) #32	ENSOJAG00000003395	DLC1 (ENSOJAG00000003313) #35	ENSOJAG00000003263 #36	ENSOJAG00000003228 #37	doc2d (ENSOJAG00000003208)
Indian medaka	MODERN SPECIES	21	rps6 (ENSOMEG00000007732) #9	ENSOMEG00000007754	SMU1 (ENSOMEG00000007796) #10	dnaja1 (ENSOMEG00000007835) #11	aptx (ENSOMEG00000007875) #12	ENSOMEG00000007883	sparcl1 (ENSOMEG00000007910) #14	odam (ENSOMEG00000007928) #15	ENSOMEG00000007940	scpp5 (ENSOMEG00000007954) #16	cnga1a (ENSOMEG00000007986) #17	TACR3 (ENSOMEG00000008412) #18	bdh2 (ENSOMEG00000008604) #19	ENSOMEG00000008651 #20	cisd2 (ENSOMEG00000008665) #21	suclg1 (ENSOMEG00000008705) #22	LRRTM1 (ENSOMEG00000008738) #23	ctnna2 (ENSOMEG00000008786) #24	ADRA1D (ENSOMEG00000008810) #25	ENSOMEG00000008846 #26	mettl14 (ENSOMEG00000008909) #28	PRSS12 (ENSOMEG00000008977) #29	ENSOMEG00000009110 #30	ugt8 (ENSOMEG00000009168) #31	spock3 (ENSOMEG00000009196) #32	ENSOMEG00000009234	DLC1 (ENSOMEG00000009365) #35	ufsp2 (ENSOMEG00000009502)	gucy1a1 (ENSOMEG00000009569)	gucy1b1 (ENSOMEG00000009617)	fabp2 (ENSOMEG00000009628)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Amphiprion	ANCESTRAL SPECIES		ENSGT00730000110920.b.a.b #7	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00940000177159.c.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Clown anemonefish	MODERN SPECIES	771											cnga1a (ENSAOCG00000008487) #17	TACR3 (ENSAOCG00000008460) #18	bdh2 (ENSAOCG00000008415) #19	ENSAOCG00000008397 #20	cisd2 (ENSAOCG00000008375) #21	suclg1 (ENSAOCG00000008360) #22
Orange clownfish	MODERN SPECIES	17	ACER2 (ENSAPEG00000017032) #7	rps6 (ENSAPEG00000017080) #9	ENSAPEG00000017099	SMU1 (ENSAPEG00000017118) #10	dnaja1 (ENSAPEG00000017232) #11	aptx (ENSAPEG00000017253) #12	sparcl1 (ENSAPEG00000017290) #14	odam (ENSAPEG00000017333) #15	ENSAPEG00000017366	scpp5 (ENSAPEG00000017382) #16	cnga1a (ENSAPEG00000017400) #17	TACR3 (ENSAPEG00000017414) #18	bdh2 (ENSAPEG00000017429) #19	ENSAPEG00000017479 #20	cisd2 (ENSAPEG00000017513) #21	suclg1 (ENSAPEG00000017532) #22	ctnna2 (ENSAPEG00000017594) #24	LRRTM1 (ENSAPEG00000017639) #23	ADRA1D (ENSAPEG00000017644) #25	ENSAPEG00000017653 #26	ENSAPEG00000017674	ENSAPEG00000017686	ENSAPEG00000017701	ENSAPEG00000017713	mettl14 (ENSAPEG00000017730) #28	PRSS12 (ENSAPEG00000017799) #29	ENSAPEG00000017836	NDST4 (ENSAPEG00000017847) #30	ugt8 (ENSAPEG00000017903) #31	spock3 (ENSAPEG00000017925) #32	SLC44A1 (ENSAPEG00000017943) #33
Spiny chromis	MODERN SPECIES	997									ENSAPOG00000007447	scpp5 (ENSAPOG00000007437) #16	cnga1a (ENSAPOG00000007408) #17	TACR3 (ENSAPOG00000007324) #18	bdh2 (ENSAPOG00000007297) #19	ENSAPOG00000007235 #20	cisd2 (ENSAPOG00000007221) #21	suclg1 (ENSAPOG00000007215) #22	RXFP3 (ENSAPOG00000007206)
Bicolor damselfish	MODERN SPECIES	265									ENSSPAG00000013579	scpp5 (ENSSPAG00000013559) #16	cnga1a (ENSSPAG00000013545) #17	TACR3 (ENSSPAG00000013525) #18	bdh2 (ENSSPAG00000013492) #19	ENSSPAG00000013442 #20	cisd2 (ENSSPAG00000013427) #21	suclg1 (ENSSPAG00000013409) #22	ENSSPAG00000013397	ENSSPAG00000013390	ENSSPAG00000013383	LRRTM1 (ENSSPAG00000013376) #23	ctnna2 (ENSSPAG00000013323) #24	ADRA1D (ENSSPAG00000013305) #25	ENSSPAG00000013292 #26	mettl14 (ENSSPAG00000013237) #28	PRSS12 (ENSSPAG00000013141) #29	ENSSPAG00000013083 #30	ugt8 (ENSSPAG00000013050) #31	spock3 (ENSSPAG00000013031) #32	SLC44A1 (ENSSPAG00000013020) #33
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Burton s mouthbrooder	MODERN SPECIES	1028									ENSHBUG00000009228	scpp5 (ENSHBUG00000009238) #16	cnga1a (ENSHBUG00000009303) #17	TACR3 (ENSHBUG00000009339) #18	bdh2 (ENSHBUG00000009359) #19	ENSHBUG00000009377 #20	cisd2 (ENSHBUG00000009391) #21	suclg1 (ENSHBUG00000009400) #22
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Zebra mbuna	MODERN SPECIES	1109	rps6 (ENSMZEG00005022614) #9	ENSMZEG00005022616	SMU1 (ENSMZEG00005022617) #10	dnaja1 (ENSMZEG00005022620) #11	aptx (ENSMZEG00005022621) #12	sparcl1 (ENSMZEG00005022624) #14	odam (ENSMZEG00005022628) #15	ENSMZEG00005022629	ENSMZEG00005022632	scpp5 (ENSMZEG00005022633) #16	cnga1a (ENSMZEG00005022635) #17	TACR3 (ENSMZEG00005022642) #18	bdh2 (ENSMZEG00005023604) #19	ENSMZEG00005023608 #20	cisd2 (ENSMZEG00005023611) #21	suclg1 (ENSMZEG00005023612) #22	ctnna2 (ENSMZEG00005023618) #24	LRRTM1 (ENSMZEG00005023622) #23	ADRA1D (ENSMZEG00005023624) #25	ENSMZEG00005023626 #26	ENSMZEG00005023627	mettl14 (ENSMZEG00005023630) #28	ENSMZEG00005023632 #29	NDST4 (ENSMZEG00005023633) #30	ugt8 (ENSMZEG00005023634) #31	spock3 (ENSMZEG00005023636) #32	SLC44A1 (ENSMZEG00005023637) #33	DLC1 (ENSMZEG00005023639) #35	LONRF1 (ENSMZEG00005023641) #36	ENSMZEG00005023642 #37	doc2d (ENSMZEG00005023644)
Eastern happy	MODERN SPECIES	18	ACER2 (ENSACLG00000019085) #7	rps6 (ENSACLG00000019061) #9	ENSACLG00000018986	SMU1 (ENSACLG00000018944) #10	dnaja1 (ENSACLG00000018913) #11	aptx (ENSACLG00000018887) #12	sparcl1 (ENSACLG00000018827) #14	odam (ENSACLG00000018796) #15	ENSACLG00000018781	scpp5 (ENSACLG00000018756) #16	cnga1a (ENSACLG00000018687) #17	TACR3 (ENSACLG00000018656) #18	bdh2 (ENSACLG00000018576) #19	ENSACLG00000018482 #20	cisd2 (ENSACLG00000018463) #21	suclg1 (ENSACLG00000018417) #22	ENSACLG00000018404	ENSACLG00000018383	ENSACLG00000018373	ENSACLG00000018360	LRRTM1 (ENSACLG00000018353) #23	ctnna2 (ENSACLG00000018180) #24	ADRA1D (ENSACLG00000018077) #25	ENSACLG00000018071 #26	ENSACLG00000018060	ENSACLG00000018042	mettl14 (ENSACLG00000018000) #28	PRSS12 (ENSACLG00000017961) #29	NDST4 (ENSACLG00000017852) #30	ugt8 (ENSACLG00000017829) #31	spock3 (ENSACLG00000017799) #32
P. nyererei	MODERN SPECIES	522										ENSPNYG00000018058	scpp5 (ENSPNYG00000018072) #16	cnga1a (ENSPNYG00000018101) #17	TACR3 (ENSPNYG00000018145) #18	ENSPNYG00000018158 #20	cisd2 (ENSPNYG00000018194) #21	suclg1 (ENSPNYG00000018205) #22	ENSPNYG00000018224	ctnna2 (ENSPNYG00000018266) #24	LRRTM1 (ENSPNYG00000018326) #23	ENSPNYG00000018332
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000014065	SMU1 (ENSNBRG00000014101) #10	dnaja1 (ENSNBRG00000014175) #11	aptx (ENSNBRG00000014199) #12	sparcl1 (ENSNBRG00000014220) #14	odam (ENSNBRG00000014244) #15	ENSNBRG00000014259	ENSNBRG00000014273	ENSNBRG00000014281	scpp5 (ENSNBRG00000014290) #16	cnga1a (ENSNBRG00000014310) #17	TACR3 (ENSNBRG00000014315) #18	bdh2 (ENSNBRG00000014330) #19	ENSNBRG00000014347 #20	cisd2 (ENSNBRG00000014387) #21	suclg1 (ENSNBRG00000014398) #22	ctnna2 (ENSNBRG00000014418) #24	LRRTM1 (ENSNBRG00000014476) #23	ADRA1D (ENSNBRG00000014484) #25	ENSNBRG00000014496 #26	ENSNBRG00000014512	mettl14 (ENSNBRG00000014523) #28	PRSS12 (ENSNBRG00000014562) #29	NDST4 (ENSNBRG00000014603) #30	ugt8 (ENSNBRG00000014639) #31	spock3 (ENSNBRG00000014656) #32	SLC44A1 (ENSNBRG00000014686) #33	ENSNBRG00000014765 #34	DLC1 (ENSNBRG00000014789) #35	ENSNBRG00000014845 #36	ENSNBRG00000014861 #37
Nile tilapia	MODERN SPECIES	18	tspan5b (ENSONIG00000019859)	ACER2 (ENSONIG00000014526) #7	rps6 (ENSONIG00000039034) #9	ENSONIG00000014533	SMU1 (ENSONIG00000014535) #10	dnaja1 (ENSONIG00000037453) #11	aptx (ENSONIG00000014541) #12	sparcl1 (ENSONIG00000014544) #14	odam (ENSONIG00000014550) #15	scpp5 (ENSONIG00000014557) #16	cnga1a (ENSONIG00000014559) #17	tacr3a (ENSONIG00000039363) #18	bdh2 (ENSONIG00000014564) #19	ENSONIG00000034335 #20	cisd2 (ENSONIG00000041801) #21	suclg1 (ENSONIG00000014566) #22	ENSONIG00000040364	ctnna2 (ENSONIG00000014573) #24	LRRTM1 (ENSONIG00000020971) #23	ADRA1D (ENSONIG00000014583) #25	ENSONIG00000014584 #26	mettl14 (ENSONIG00000014586) #28	PRSS12 (ENSONIG00000014590) #29	ENSONIG00000014591 #30	ugt8 (ENSONIG00000014598) #31	spock3 (ENSONIG00000014601) #32	SLC44A1 (ENSONIG00000014604) #33	DLC1 (ENSONIG00000014607) #35	ENSONIG00000014612 #36	ENSONIG00000042853 #37	doc2d (ENSONIG00000014615)
Midas cichlid	MODERN SPECIES	122	ENSACIG00000002217 #8	rps6 (ENSACIG00000002210) #9	ENSACIG00000002199	SMU1 (ENSACIG00000002076) #10	dnaja1 (ENSACIG00000002055) #11	aptx (ENSACIG00000002035) #12	ENSACIG00000002013 #14	odam (ENSACIG00000001992) #15	ENSACIG00000001984	scpp5 (ENSACIG00000001958) #16	cnga1a (ENSACIG00000001936) #17	TACR3 (ENSACIG00000001663) #18	bdh2 (ENSACIG00000001616) #19	ENSACIG00000001577 #20	cisd2 (ENSACIG00000001566) #21	suclg1 (ENSACIG00000001544) #22	LRRTM1 (ENSACIG00000001535) #23	ctnna2 (ENSACIG00000001489) #24	ADRA1D (ENSACIG00000001471) #25	ENSACIG00000001446 #26
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345	ENSGT00940000159681
Climbing perch	MODERN SPECIES		ENSATEG00000017230	SMU1 (ENSATEG00000017248) #10	dnaja1 (ENSATEG00000017364) #11	APTX (ENSATEG00000017383) #12	ENSATEG00000017394 #13	ENSATEG00000017406 #14	odam (ENSATEG00000017419) #15	ENSATEG00000017442	ENSATEG00000017452	scpp5 (ENSATEG00000017465) #16	cnga1a (ENSATEG00000017513) #17	TACR3 (ENSATEG00000017574) #18	bdh2 (ENSATEG00000017607) #19	SLC9B1 (ENSATEG00000017642) #20	cisd2 (ENSATEG00000017657) #21	suclg1 (ENSATEG00000017672) #22	ctnna2 (ENSATEG00000017691) #24	LRRTM1 (ENSATEG00000017745) #23	ENSATEG00000017749 #25	ENSATEG00000017762 #26	ENSATEG00000017785 #27	ENSATEG00000025481	ENSATEG00000017813	mettl14 (ENSATEG00000017832) #28	ENSATEG00000017870 #29	ENSATEG00000017903 #30	ugt8 (ENSATEG00000017927) #31	spock3 (ENSATEG00000017945) #32	ENSATEG00000017967 #33	ENSATEG00000018022 #35	ENSATEG00000018111
Siamese fighting fish	MODERN SPECIES		nol11 (ENSBSLG00000017069)	SMU1 (ENSBSLG00000016940) #10	dnaja1 (ENSBSLG00000016905) #11	aptx (ENSBSLG00000016849) #12	ENSBSLG00000016827	sparcl1 (ENSBSLG00000016712) #14	odam (ENSBSLG00000016616) #15	ENSBSLG00000016574	ENSBSLG00000016040	scpp5 (ENSBSLG00000016035) #16	cnga1a (ENSBSLG00000016015) #17	TACR3 (ENSBSLG00000015997) #18	bdh2 (ENSBSLG00000015992) #19	SLC9B2 (ENSBSLG00000015950) #20	cisd2 (ENSBSLG00000015941) #21	suclg1 (ENSBSLG00000015918) #22	ENSBSLG00000015913	ctnna2 (ENSBSLG00000015049) #24	ENSBSLG00000015024 #25	ENSBSLG00000015020 #26	mettl14 (ENSBSLG00000014933) #28	ENSBSLG00000014911 #29	ENSBSLG00000014859 #30	ugt8 (ENSBSLG00000014839) #31	spock3 (ENSBSLG00000014816) #32	SLC44A1 (ENSBSLG00000014605) #33	DLC1 (ENSBSLG00000013981) #35	ENSBSLG00000013933 #36	ENSBSLG00000013918 #37	doc2d (ENSBSLG00000013901)	serping1 (ENSBSLG00000013845)
Zig-zag eel	MODERN SPECIES		SMU1 (ENSMAMG00000018274) #10	dnaja1 (ENSMAMG00000018358) #11	APTX (ENSMAMG00000018377) #12	ENSMAMG00000026272	ENSMAMG00000018394 #14	ENSMAMG00000025792	odam (ENSMAMG00000018415) #15	ENSMAMG00000018437	ENSMAMG00000018444	scpp5 (ENSMAMG00000018457) #16	cnga1a (ENSMAMG00000018476) #17	TACR3 (ENSMAMG00000018492) #18	bdh2 (ENSMAMG00000018504) #19	ENSMAMG00000018544 #20	cisd2 (ENSMAMG00000028273) #21	suclg1 (ENSMAMG00000018563) #22	ctnna2 (ENSMAMG00000018570) #24	LRRTM1 (ENSMAMG00000018584) #23	ENSMAMG00000018587 #25	ENSMAMG00000028568 #26	ENSMAMG00000018592	ENSMAMG00000018606	mettl14 (ENSMAMG00000018629) #28	ENSMAMG00000018662 #29	ENSMAMG00000018700 #30	ugt8 (ENSMAMG00000018719) #31	spock3 (ENSMAMG00000018735) #32	ENSMAMG00000018744 #33	ENSMAMG00000018759 #35	ENSMAMG00000018858 #36	ENSMAMG00000018912 #37
Carangaria	ANCESTRAL SPECIES		ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT01070000255175	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00940000177191 #8	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00940000178602	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37	ENSGT00940000166345
Tongue sole	MODERN SPECIES	19	uso1 (ENSCSEG00000009613)	g3bp2a (ENSCSEG00000009591)	SMU1 (ENSCSEG00000009575) #10	dnaja1 (ENSCSEG00000009567) #11	aptx (ENSCSEG00000009549) #12	ENSCSEG00000009545	ENSCSEG00000009518 #14	odam (ENSCSEG00000009497) #15	ENSCSEG00000009491	scpp5 (ENSCSEG00000009482) #16	cnga1a (ENSCSEG00000009469) #17	TACR3 (ENSCSEG00000009462) #18	bdh2 (ENSCSEG00000009447) #19	ENSCSEG00000009405 #20	cisd2 (ENSCSEG00000009437) #21	suclg1 (ENSCSEG00000009370) #22	LRRTM1 (ENSCSEG00000009356) #23	ctnna2 (ENSCSEG00000009286) #24	ADRA1D (ENSCSEG00000009270) #25	ENSCSEG00000009242 #26	mettl14 (ENSCSEG00000009185) #28	PRSS12 (ENSCSEG00000009112) #29	ENSCSEG00000009097 #29	ENSCSEG00000009083 #30	ugt8 (ENSCSEG00000009068) #31	spock3 (ENSCSEG00000009038) #32	ENSCSEG00000009027	SLC44A1 (ENSCSEG00000008984) #33	DLC1 (ENSCSEG00000008933) #35	ENSCSEG00000008911 #36	ENSCSEG00000008864 #37
Turbot	MODERN SPECIES	20	ENSSMAG00000027574 #8	rps6 (ENSSMAG00000008931) #9	ENSSMAG00000008909	SMU1 (ENSSMAG00000008879) #10	dnaja1 (ENSSMAG00000008868) #11	APTX (ENSSMAG00000008839) #12	ENSSMAG00000008822 #14	odam (ENSSMAG00000008813) #15	ENSSMAG00000008801	scpp5 (ENSSMAG00000008766) #16	cnga1a (ENSSMAG00000008736) #17	TACR3 (ENSSMAG00000035648) #18	bdh2 (ENSSMAG00000008674) #19	ENSSMAG00000008657 #20	cisd2 (ENSSMAG00000032259) #21	SUCLG1 (ENSSMAG00000008628) #22	ENSSMAG00000008610 #24	LRRTM1 (ENSSMAG00000009055) #23	ENSSMAG00000009082 #25	ENSSMAG00000024371 #26	ENSSMAG00000021740	ENSSMAG00000022575	ENSSMAG00000034718	mettl14 (ENSSMAG00000009127) #28	ENSSMAG00000009162 #29	ENSSMAG00000009213 #30	ugt8 (ENSSMAG00000009307) #31	spock3 (ENSSMAG00000009372) #32	ENSSMAG00000009405 #33	ENSSMAG00000009448 #35	ENSSMAG00000009537 #36
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT01070000255175	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Seriola	ANCESTRAL SPECIES	29	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT01070000255175	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00940000177159.c.a.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828.bb #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34
Greater amberjack	MODERN SPECIES	101	rps6 (ENSSDUG00000002076) #9	ENSSDUG00000002063	SMU1 (ENSSDUG00000002047) #10	dnaja1 (ENSSDUG00000002008) #11	aptx (ENSSDUG00000001989) #12	ENSSDUG00000001984 #13	sparcl1 (ENSSDUG00000001949) #14	odam (ENSSDUG00000001922) #15	ENSSDUG00000001908	ENSSDUG00000001895	cnga1a (ENSSDUG00000001877) #17	TACR3 (ENSSDUG00000001040) #18	bdh2 (ENSSDUG00000000922) #19	ENSSDUG00000000910 #20	cisd2 (ENSSDUG00000000891) #21	suclg1 (ENSSDUG00000000852) #22	LRRTM1 (ENSSDUG00000000842) #23	ctnna2 (ENSSDUG00000000813) #24	ADRA1D (ENSSDUG00000000779) #25	ENSSDUG00000000767 #26	ENSSDUG00000000739	ENSSDUG00000000728	ENSSDUG00000000720	ENSSDUG00000000699	mettl14 (ENSSDUG00000000688) #28	PRSS12 (ENSSDUG00000000645) #29	ENSSDUG00000000591 #30	ugt8 (ENSSDUG00000000562) #31	spock3 (ENSSDUG00000000546) #32	SLC44A1 (ENSSDUG00000000443) #33	DLC1 (ENSSDUG00000000411) #35
Yellowtail amberjack	MODERN SPECIES	2974	rps6 (ENSSLDG00000005018) #9	ENSSLDG00000004995	SMU1 (ENSSLDG00000004975) #10	dnaja1 (ENSSLDG00000004934) #11	aptx (ENSSLDG00000004915) #12	ENSSLDG00000004895 #13	sparcl1 (ENSSLDG00000004844) #14	odam (ENSSLDG00000004794) #15	scpp5 (ENSSLDG00000004766) #16	cnga1a (ENSSLDG00000004724) #17	TACR3 (ENSSLDG00000004685) #18	ENSSLDG00000004661	bdh2 (ENSSLDG00000004615) #19	ENSSLDG00000004586 #20	cisd2 (ENSSLDG00000004561) #21	suclg1 (ENSSLDG00000004481) #22	LRRTM1 (ENSSLDG00000004459) #23	ctnna2 (ENSSLDG00000004360) #24	ADRA1D (ENSSLDG00000004332) #25	ENSSLDG00000004314 #26	ENSSLDG00000004305	ENSSLDG00000004285	ENSSLDG00000004267	ENSSLDG00000004243	mettl14 (ENSSLDG00000004181) #28	PRSS12 (ENSSLDG00000004115) #29	ENSSLDG00000004076	ENSSLDG00000003978 #30	ugt8 (ENSSLDG00000003939) #31	spock3 (ENSSLDG00000003911) #32	SLC44A1 (ENSSLDG00000003838) #33
Barramundi perch	MODERN SPECIES	108	ACER2 (ENSLCAG00010002321) #7	ENSLCAG00010002319 #8	rps6 (ENSLCAG00010002276) #9	ENSLCAG00010002265	SMU1 (ENSLCAG00010002262) #10	dnaja1 (ENSLCAG00010002259) #11	aptx (ENSLCAG00010002255) #12	sparcl1 (ENSLCAG00010002249) #14	odam (ENSLCAG00010002243) #15	ENSLCAG00010002237	cnga1a (ENSLCAG00010002235) #17	TACR3 (ENSLCAG00010002224) #18	bdh2 (ENSLCAG00010002216) #19	ENSLCAG00010002211 #20	cisd2 (ENSLCAG00010002204) #21	suclg1 (ENSLCAG00010002194) #22	LRRTM1 (ENSLCAG00010002183) #23	ctnna2 (ENSLCAG00010002082) #24	ADRA1D (ENSLCAG00010002021) #25	ENSLCAG00010002017 #26	ENSLCAG00010002002	ENSLCAG00010002000	ENSLCAG00010001992	ENSLCAG00010001987	mettl14 (ENSLCAG00010001982) #28	PRSS12 (ENSLCAG00010001981) #29	ENSLCAG00010001971 #30	ugt8 (ENSLCAG00010001962) #31	spock3 (ENSLCAG00010001958) #32	SLC44A1 (ENSLCAG00010001947) #33	DLC1 (ENSLCAG00010001936) #35
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Tetraodontidae	ANCESTRAL SPECIES	40																ENSGT00940000156351 #22	ENSGT00940000161705 #23	ENSGT01030000234543.A.a #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000166330	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Fugu	MODERN SPECIES	8	ENSTRUG00000022752	SLC29A1 (ENSTRUG00000028910)	ENSTRUG00000030929	ENSTRUG00000026927	gtf2e2 (ENSTRUG00000004948)	STIM2 (ENSTRUG00000000799)	ENSTRUG00000031532	ENSTRUG00000003718	jupa (ENSTRUG00000000583)	ENSTRUG00000033337	ENSTRUG00000004797	gtf2e2 (ENSTRUG00000028017)	ENSTRUG00000028691	ENSTRUG00000030942	patl1 (ENSTRUG00000000709)	suclg1 (ENSTRUG00000000638) #22	ENSTRUG00000027160	ENSTRUG00000027425	ENSTRUG00000032245	ENSTRUG00000031293	ENSTRUG00000023192	ENSTRUG00000032775	ENSTRUG00000033430	LRRTM1 (ENSTRUG00000004494) #23	ENSTRUG00000020187	ctnna2 (ENSTRUG00000002863) #24	ENSTRUG00000031420	ADRA1D (ENSTRUG00000002804) #25	ENSTRUG00000004059 #26	ENSTRUG00000032089	ENSTRUG00000026317
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002630	scn1bb (ENSTNIG00000002631)	LMNA (ENSTNIG00000002632)	usf2 (ENSTNIG00000002633)	tekt2 (ENSTNIG00000019548)	ENSTNIG00000002634	AGO3 (ENSTNIG00000002635)	olah (ENSTNIG00000002636)	slc9a3.2 (ENSTNIG00000002637)	cfdp1 (ENSTNIG00000002638)	tyro3 (ENSTNIG00000002639)	ENSTNIG00000002640	ENSTNIG00000002641	kiaa0232 (ENSTNIG00000002642)	CHD7 (ENSTNIG00000002647)	suclg1 (ENSTNIG00000002648) #22	ENSTNIG00000002663	kmo (ENSTNIG00000002664)	kmo (ENSTNIG00000002665)	opn3 (ENSTNIG00000002666)	ENSTNIG00000000476	DGKQ (ENSTNIG00000002692)	NFKB1 (ENSTNIG00000002693)	serpine1 (ENSTNIG00000002703)	stx6 (ENSTNIG00000002704)	tab2 (ENSTNIG00000002705)	ppil4 (ENSTNIG00000002706)	katna1 (ENSTNIG00000002707)	slc5a6a (ENSTNIG00000002708)	ENSTNIG00000002709	ENSTNIG00000004481
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Ballan wrasse	MODERN SPECIES	206	ENSLBEG00000021852	rps6 (ENSLBEG00000021824) #9	ENSLBEG00000021807	SMU1 (ENSLBEG00000021787) #10	dnaja1 (ENSLBEG00000021625) #11	aptx (ENSLBEG00000021489) #12	sparcl1 (ENSLBEG00000021438) #14	odam (ENSLBEG00000021396) #15	ENSLBEG00000021372	scpp5 (ENSLBEG00000021351) #16	cnga1a (ENSLBEG00000021308) #17	TACR3 (ENSLBEG00000021286) #18	bdh2 (ENSLBEG00000021228) #19	ENSLBEG00000021146 #20	cisd2 (ENSLBEG00000021113) #21	suclg1 (ENSLBEG00000021066) #22	ctnna2 (ENSLBEG00000021031) #24	LRRTM1 (ENSLBEG00000021006) #23
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000009819.a.a #9	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00940000177159.c.a.b	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Gilthead seabream	MODERN SPECIES		ENSSAUG00010017880	SMU1 (ENSSAUG00010017881) #10	dnaja1 (ENSSAUG00010017883) #11	aptx (ENSSAUG00010017893) #12	ENSSAUG00010017895	sparcl1 (ENSSAUG00010017897) #14	odam (ENSSAUG00010017903) #15	ENSSAUG00010017905	ENSSAUG00010017911	scpp5 (ENSSAUG00010017912) #16	cnga1a (ENSSAUG00010017915) #17	TACR3 (ENSSAUG00010017918) #18	bdh2 (ENSSAUG00010017950) #19	ENSSAUG00010017960 #20	cisd2 (ENSSAUG00010017977) #21	suclg1 (ENSSAUG00010017983) #22	ENSSAUG00010017999	ctnna2 (ENSSAUG00010018035) #24	ENSSAUG00010018861	ENSSAUG00010018862	ADRA1D (ENSSAUG00010018863) #25	ENSSAUG00010018864 #26	ENSSAUG00010018869	ENSSAUG00010018874	mettl14 (ENSSAUG00010018877) #28	PRSS12 (ENSSAUG00010018882) #29	NDST4 (ENSSAUG00010018887) #30	ugt8 (ENSSAUG00010018916) #31	spock3 (ENSSAUG00010018917) #32	SLC44A1 (ENSSAUG00010018918) #33	DLC1 (ENSSAUG00010018938) #35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00950000182920.b.a.a	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000177159.d	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005008280 #36	ENSLCRG00005008285 #36	DLC1 (ENSLCRG00005008299) #35	SLC44A1 (ENSLCRG00005008681) #33	spock3 (ENSLCRG00005008886) #32	spock3 (ENSLCRG00005008890) #32	ugt8 (ENSLCRG00005008894) #31	ENSLCRG00005008898 #30	PRSS12 (ENSLCRG00005008922) #29	mettl14 (ENSLCRG00005008932) #28	ENSLCRG00005008937	TACR3 (ENSLCRG00005008938) #18	bdh2 (ENSLCRG00005008955) #19	ENSLCRG00005008969 #20	cisd2 (ENSLCRG00005009102) #21	suclg1 (ENSLCRG00005009107) #22	cisd2 (ENSLCRG00005009143) #21	ctnna2 (ENSLCRG00005009175) #24	LRRTM1 (ENSLCRG00005010122) #23	ADRA1D (ENSLCRG00005010123) #25	ENSLCRG00005010124 #26	cnga1a (ENSLCRG00005010125) #17	ENSLCRG00005010127 #16	ENSLCRG00005010128	ENSLCRG00005010129	odam (ENSLCRG00005010130) #15	ENSLCRG00005010131 #14	ENSLCRG00005010133 #13	aptx (ENSLCRG00005010135) #12	dnaja1 (ENSLCRG00005010136) #11	SMU1 (ENSLCRG00005010138) #10
European seabass	MODERN SPECIES	20	ENSDLAG00005001655	SMU1 (ENSDLAG00005001623) #10	dnaja1 (ENSDLAG00005001607) #11	APTX (ENSDLAG00005001582) #12	ENSDLAG00005001571 #13	ENSDLAG00005001560 #14	odam (ENSDLAG00005001549) #15	ENSDLAG00005001540	ENSDLAG00005034495	scpp5 (ENSDLAG00005001517) #16	cnga1a (ENSDLAG00005001510) #17	TACR3 (ENSDLAG00005001481) #18	bdh2 (ENSDLAG00005001375) #19	ENSDLAG00005026321 #20	cisd2 (ENSDLAG00005026320) #21	suclg1 (ENSDLAG00005026319) #22	ENSDLAG00005033412 #23	ctnna2 (ENSDLAG00005026311) #24	ENSDLAG00005026305 #25	ENSDLAG00005026304 #26	ENSDLAG00005005187	ENSDLAG00005027483	mettl14 (ENSDLAG00005026301) #28	ENSDLAG00005026300 #29	ENSDLAG00005026298 #30	ugt8 (ENSDLAG00005026297) #31	spock3 (ENSDLAG00005026459) #32	ENSDLAG00005026294 #33	ENSDLAG00005026287 #35	ENSDLAG00005026283 #36	ENSDLAG00005026281 #37
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000172773	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Pike perch	MODERN SPECIES	45	rps6 (ENSSLUG00000014713) #9	ENSSLUG00000014701	SMU1 (ENSSLUG00000014681) #10	dnaja1 (ENSSLUG00000014665) #11	aptx (ENSSLUG00000014656) #12	sparcl1 (ENSSLUG00000014651) #14	odam (ENSSLUG00000014644) #15	ENSSLUG00000014639	ENSSLUG00000014634	ENSSLUG00000014631	cnga1a (ENSSLUG00000014626) #17	TACR3 (ENSSLUG00000014476) #18	bdh2 (ENSSLUG00000014451) #19	ENSSLUG00000014432 #20	cisd2 (ENSSLUG00000014428) #21	suclg1 (ENSSLUG00000014350) #22
Channel bull blenny	MODERN SPECIES		ENSCGOG00000000279 #8	ENSCGOG00000000282	SMU1 (ENSCGOG00000000296) #10	dnaja1 (ENSCGOG00000000315) #11	aptx (ENSCGOG00000000316) #12	sparcl1 (ENSCGOG00000000317) #14	odam (ENSCGOG00000000320) #15	ENSCGOG00000000324	ENSCGOG00000000328	scpp5 (ENSCGOG00000000332) #16	cnga1a (ENSCGOG00000000336) #17	TACR3 (ENSCGOG00000000342) #18	bdh2 (ENSCGOG00000000375) #19	ENSCGOG00000000405 #20	cisd2 (ENSCGOG00000000443) #21	suclg1 (ENSCGOG00000000489) #22	ctnna2 (ENSCGOG00000000736) #24	LRRTM1 (ENSCGOG00000001246) #23	ADRA1D (ENSCGOG00000001249) #25	ENSCGOG00000001251 #26	ENSCGOG00000001254	mettl14 (ENSCGOG00000001256) #28	PRSS12 (ENSCGOG00000001351) #29	ENSCGOG00000001419 #30	ENSCGOG00000002252	ugt8 (ENSCGOG00000002253) #31	spock3 (ENSCGOG00000002254) #32	SLC44A1 (ENSCGOG00000002257) #33	DLC1 (ENSCGOG00000002484) #35	ENSCGOG00000002493	LONRF1 (ENSCGOG00000002496) #36
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.a #9	ENSGT00940000169889	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00940000156806 #12	ENSGT00730000112195 #13	ENSGT00510000046787.e.a #14	ENSGT00400000023138 #15	ENSGT00940000177216	ENSGT01070000255175	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00740000115955.D.a #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000157168 #30	ENSGT00940000156545 #31	ENSGT00940000157828 #32	ENSGT00940000157174.c #33	ENSGT00940000173544 #34	ENSGT00950000183061.a.a.a.a.a.a.b #35	ENSGT00440000033329.a.a.b #36	ENSGT00940000159796.a.a #37
Lumpfish	MODERN SPECIES		ENSCLMG00005005483 #8	rps6 (ENSCLMG00005005482) #9	SMU1 (ENSCLMG00005005479) #10	dnaja1 (ENSCLMG00005005467) #11	aptx (ENSCLMG00005005461) #12	ENSCLMG00005005442 #14	odam (ENSCLMG00005005438) #15	ENSCLMG00005005437	ENSCLMG00005005434	ENSCLMG00005005433	cnga1a (ENSCLMG00005005432) #17	TACR3 (ENSCLMG00005005241) #18	bdh2 (ENSCLMG00005005238) #19	ENSCLMG00005004048 #20	cisd2 (ENSCLMG00005004046) #21	suclg1 (ENSCLMG00005004045) #22	LRRTM1 (ENSCLMG00005004041) #23	ctnna2 (ENSCLMG00005003050) #24	ADRA1D (ENSCLMG00005002967) #25	ENSCLMG00005002962 #26	mettl14 (ENSCLMG00005002849) #28	PRSS12 (ENSCLMG00005002812) #29	ENSCLMG00005007460 #30	ugt8 (ENSCLMG00005007454) #31	spock3 (ENSCLMG00005007452) #32	SLC44A1 (ENSCLMG00005007359) #33	ENSCLMG00005007356 #34	DLC1 (ENSCLMG00005007045) #35	ENSCLMG00005007041 #36	ENSCLMG00005007039 #37	doc2d (ENSCLMG00005007038)
Stickleback	MODERN SPECIES	4	tspan5b (ENSGACG00000017858)	ACER2 (ENSGACG00000017860) #7	rps6 (ENSGACG00000017861) #9	ENSGACG00000017870	SMU1 (ENSGACG00000017872) #10	dnaja1 (ENSGACG00000017879) #11	aptx (ENSGACG00000017887) #12	ENSGACG00000017889 #13	sparcl1 (ENSGACG00000017892) #14	odam (ENSGACG00000017898) #15	cnga1a (ENSGACG00000017900) #17	TACR3 (ENSGACG00000017903) #18	bdh2 (ENSGACG00000017906) #19	ENSGACG00000017922 #20	cisd2 (ENSGACG00000017930) #21	suclg1 (ENSGACG00000017932) #22	ctnna2 (ENSGACG00000017985) #24	LRRTM1 (ENSGACG00000017992) #23	ADRA1D (ENSGACG00000017994) #25	ENSGACG00000017996 #26	ENSGACG00000018001 #27	mettl14 (ENSGACG00000018009) #28	PRSS12 (ENSGACG00000018013) #29	ENSGACG00000018022 #30	ugt8 (ENSGACG00000018024) #31	spock3 (ENSGACG00000018028) #32	SLC44A1 (ENSGACG00000018031) #33	DLC1 (ENSGACG00000018034) #35	LONRF1 (ENSGACG00000018037) #36	ENSGACG00000018047 #37	doc2d (ENSGACG00000018051)
Tiger tail seahorse	MODERN SPECIES	257	ACER2 (ENSHCOG00000018420) #7	rps6 (ENSHCOG00000018405) #9	ENSHCOG00000018386 #8	ENSHCOG00000018358	SMU1 (ENSHCOG00000018344) #10	dnaja1 (ENSHCOG00000000486) #11	aptx (ENSHCOG00000018216) #12	ENSHCOG00000018191	sparcl1 (ENSHCOG00000018185) #14	ENSHCOG00000018166	cnga1a (ENSHCOG00000018140) #17	ENSHCOG00000018082	bdh2 (ENSHCOG00000018061) #19	ENSHCOG00000018029 #20	cisd2 (ENSHCOG00000017967) #21	suclg1 (ENSHCOG00000017954) #22	ctnna2 (ENSHCOG00000017925) #24	LRRTM1 (ENSHCOG00000017874) #23	ADRA1D (ENSHCOG00000017866) #25	ENSHCOG00000017850 #26	mettl14 (ENSHCOG00000017822) #28	PRSS12 (ENSHCOG00000017771) #29	ENSHCOG00000017731 #30	ENSHCOG00000017691	ugt8 (ENSHCOG00000017679) #31	spock3 (ENSHCOG00000017653) #32	ENSHCOG00000017639
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005000100	SMU1 (ENSMMDG00005000107) #10	dnaja1 (ENSMMDG00005000127) #11	aptx (ENSMMDG00005000160) #12	ENSMMDG00005000171	sparcl1 (ENSMMDG00005000193) #14	ENSMMDG00005000265	odam (ENSMMDG00005000273) #15	ENSMMDG00005000285	scpp5 (ENSMMDG00005000291) #16	cnga1a (ENSMMDG00005000299) #17	TACR3 (ENSMMDG00005000329) #18	bdh2 (ENSMMDG00005000449) #19	ENSMMDG00005000470 #20	cisd2 (ENSMMDG00005000504) #21	suclg1 (ENSMMDG00005000516) #22	ENSMMDG00005000563	ENSMMDG00005000568	ctnna2 (ENSMMDG00005000625) #24	LRRTM1 (ENSMMDG00005000996) #23	CTNNA2 (ENSMMDG00005001000) #24	ADRA1D (ENSMMDG00005001002) #25	ENSMMDG00005001005 #26	ENSMMDG00005001009	ENSMMDG00005001013	ENSMMDG00005001016	mettl14 (ENSMMDG00005001021) #28	PRSS12 (ENSMMDG00005001027) #29	NDST4 (ENSMMDG00005001034) #30	ugt8 (ENSMMDG00005001077) #31	spock3 (ENSMMDG00005001078) #32
Protacanthopterygii	ANCESTRAL SPECIES	40	ENSGT00950000183040.A.b.g	ENSGT00940000155128.a.b.a.b	ENSGT00940000155905.a	ENSGT00490000043413	ENSGT00940000175947	ENSGT00530000063614.a.b	ENSGT00940000156323.c.a	ENSGT00940000156432.a	ENSGT00940000164636	ENSGT00940000155521.b	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00940000155512.q.a	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a.g.b #24	ENSGT00940000161705 #23	ENSGT01030000234543.A.a.h #24	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000156223	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b
Northern pike	MODERN SPECIES	24	FAM193A (ENSELUG00000004310)	arfip1 (ENSELUG00000004198)	FHDC1 (ENSELUG00000004162)	trim2a (ENSELUG00000004122)	mnd1 (ENSELUG00000004076)	ENSELUG00000034332	TMEM131L (ENSELUG00000004037)	sfrp2 (ENSELUG00000001439)	ENSELUG00000001628	ENSELUG00000025340	cnga1a (ENSELUG00000003913) #17	ENSELUG00000031973	ENSELUG00000003896	ENSELUG00000003876 #20	cisd2 (ENSELUG00000003862) #21	suclg1 (ENSELUG00000003850) #22	ENSELUG00000027963	LRRTM1 (ENSELUG00000003784) #23	ctnna2 (ENSELUG00000003821) #24	CTNNA2 (ENSELUG00000000126) #24	ENSELUG00000027526	ADRA1D (ENSELUG00000003758) #25	ENSELUG00000003752 #26	ENSELUG00000024542	smox (ENSELUG00000024529)	rnf24 (ENSELUG00000024505)	FBXO41 (ENSELUG00000024471)	ENSELUG00000024400	mogs (ENSELUG00000024365)	pdcd4a (ENSELUG00000024343)	patl1 (ENSELUG00000024249)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000156351.k #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000156351.k #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000156351.k #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000156351.k #22
Chinook salmon	MODERN SPECIES	2472																ENSOTSG00005020190 #22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	311							ENSGT00530000063614.a.b.p	ENSGT00940000156432.a.d	ENSGT00940000164636	ENSGT00940000155521.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00390000013285.g.f #20	ENSGT00940000156660.c #21	ENSGT00940000156351.l.a #22	ENSGT01030000234543.A.a.g.b #24	ENSGT00940000161705.c #23	ENSGT01030000234543.A.a.h.a.b #24	ENSGT00940000160795.d #25	ENSGT00950000182934.a.a.h #26	ENSGT00940000156223.s	ENSGT00940000157511.l	ENSGT00940000155512.q.a	ENSGT00390000013285.g.e #20	ENSGT00940000156660.d #21	ENSGT00940000156351.l.b #22	ENSGT01030000234543.A.a.g.a #24	ENSGT00940000161705.d #23	ENSGT01030000234543.A.a.h.a.a #24	ENSGT00940000160795.c #25
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT00390000012242.b.a.c	ENSGT00510000046908.a.b.b	ENSGT00390000000973.a.b.h.a	ENSGT00950000183040.A.b.g.a	ENSGT00940000155128.a.b.a.b.c	ENSGT00940000155905.a.g.b	ENSGT00490000043413.t	ENSGT00530000063614.a.b.p	ENSGT00940000156432.a.d	ENSGT00940000164636	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00390000013285.g.f #20	ENSGT00940000156660.c #21	ENSGT00940000156351.l.a #22	ENSGT01030000234543.A.a.g.b.b #24	ENSGT00940000161705.c #23	ENSGT01030000234543.A.a.h.a.b #24	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.b	ENSGT00940000160795.d #25	ENSGT00950000182934.a.a.h #26	ENSGT00940000156223.s	ENSGT00940000157511.l	ENSGT00940000159443.g.b	ENSGT00530000063713.b.a.o	ENSGT00940000160184.c.b.a	ENSGT00390000017452.a	ENSGT00390000015948.a.f	ENSGT00520000055649.a.b	ENSGT00730000111690.B.g.d
Salmo	ANCESTRAL SPECIES	59	ENSGT00390000012242.b.a.c	ENSGT00510000046908.a.b.b	ENSGT00390000000973.a.b.h.a	ENSGT00950000183040.A.b.g.a	ENSGT00940000155128.a.b.a.b.c	ENSGT00940000155905.a.g.b	ENSGT00490000043413.t	ENSGT00530000063614.a.b.p	ENSGT00940000156432.a.d	ENSGT00940000164636	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00390000013285.g.f #20	ENSGT00940000156660.c #21	ENSGT00940000156351.l.a #22	ENSGT01030000234543.A.a.g.b.a.a #24	ENSGT00940000161705.c #23	ENSGT01030000234543.A.a.h.a.b #24	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.b	ENSGT00940000160795.d #25	ENSGT00950000182934.a.a.h #26	ENSGT00940000156223.s	ENSGT00940000157511.l	ENSGT00940000159443.g.b	ENSGT00530000063713.b.a.o	ENSGT00940000160184.c.b.a	ENSGT00390000017452.a	ENSGT00390000015948.a.f	ENSGT00520000055649.a.b	ENSGT00730000111690.B.g.d
River trout	MODERN SPECIES	33	ENSSTUG00000018340	FAM193A (ENSSTUG00000018064)	arfip1 (ENSSTUG00000018024)	FHDC1 (ENSSTUG00000018000)	trim2a (ENSSTUG00000017539)	ENSSTUG00000017517	mnd1 (ENSSTUG00000017491)	TMEM131L (ENSSTUG00000017449)	sfrp2 (ENSSTUG00000017443)	ENSSTUG00000017384	ENSSTUG00000017380	cnga1a (ENSSTUG00000017357) #17	TACR3 (ENSSTUG00000017330) #18	ENSSTUG00000017266 #20	cisd2 (ENSSTUG00000017249) #21	suclg1 (ENSSTUG00000017128) #22	ENSSTUG00000017114	ctnna2 (ENSSTUG00000016356) #24	LRRTM1 (ENSSTUG00000016329) #23	CTNNA2 (ENSSTUG00000016308) #24	ENSSTUG00000016263	ENSSTUG00000016252	ADRA1D (ENSSTUG00000016236) #25	ENSSTUG00000016220 #26	ENSSTUG00000016210	smox (ENSSTUG00000016198)	rnf24 (ENSSTUG00000016179)	FBXO41 (ENSSTUG00000016142)	ENSSTUG00000016136	mogs (ENSSTUG00000016120)	pdcd4a (ENSSTUG00000014289)
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000005565	TNIP2 (ENSSSAG00000005559)	ENSSSAG00000005348	arfip1 (ENSSSAG00000005299)	FHDC1 (ENSSSAG00000005268)	trim2a (ENSSSAG00000008703)	mnd1 (ENSSSAG00000005065)	ENSSSAG00000005054	ENSSSAG00000099124	ENSSSAG00000004954	ENSSSAG00000099911	ENSSSAG00000104718 #18	cnga1a (ENSSSAG00000004920) #17	ENSSSAG00000008184 #20	cisd2a (ENSSSAG00000004742) #21	suclg1 (ENSSSAG00000004592) #22	ENSSSAG00000083187	ENSSSAG00000092403	ctnna2 (ENSSSAG00000003813) #24	LRRTM1 (ENSSSAG00000101677) #23	ENSSSAG00000087068	ENSSSAG00000121561	ENSSSAG00000114434	ENSSSAG00000106880 #25	ENSSSAG00000064771 #26	ENSSSAG00000064764	ENSSSAG00000087904	smox (ENSSSAG00000007906)	rnf24 (ENSSSAG00000064742)	ENSSSAG00000064583	ENSSSAG00000064568
Oncorhynchus	ANCESTRAL SPECIES	52	ENSGT00940000164052.a	ENSGT00510000046908.a.b.b	ENSGT00390000000973.a.b.h.a	ENSGT00950000183040.A.b.g.a	ENSGT00940000155128.a.b.a.b.c	ENSGT00940000155905.a.g.b	ENSGT00490000043413.t	ENSGT00530000063614.a.b.p	ENSGT00940000156432.a.d	ENSGT00940000164636	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00390000013285.g.f #20	ENSGT00940000156660.c #21	ENSGT00940000156351.l.a #22	ENSGT01030000234543.A.a.g.b.b #24	ENSGT00940000161705.c #23	ENSGT01030000234543.A.a.h.a.b #24	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.b	ENSGT00940000160795.d #25	ENSGT00950000182934.a.a.h #26	ENSGT00940000156223.s	ENSGT00940000157511.l	ENSGT00940000159443.g.b	ENSGT00530000063713.b.a.o	ENSGT00940000160184.c.b.a	ENSGT00390000017452.a	ENSGT00390000015948.a.f	ENSGT00520000055649.a.b	ENSGT00730000111690.B.g.d
Rainbow trout	MODERN SPECIES	1	arfip1 (ENSOMYG00000004341)	ENSOMYG00000062302	FHDC1 (ENSOMYG00000004388)	trim2a (ENSOMYG00000004571)	MND1 (ENSOMYG00000004686)	TMEM131L (ENSOMYG00000004786)	ENSOMYG00000072787	ENSOMYG00000004842	ENSOMYG00000004874	cnga1a (ENSOMYG00000004893) #17	ENSOMYG00000065534	ENSOMYG00000052180	ENSOMYG00000062789 #18	ENSOMYG00000004996 #20	cisd2 (ENSOMYG00000005050) #21	suclg1 (ENSOMYG00000005112) #22	ENSOMYG00000072190	ENSOMYG00000068073	ENSOMYG00000074370	ctnna2 (ENSOMYG00000005864) #24	ENSOMYG00000075373 #23	CTNNA2 (ENSOMYG00000006393) #24	ENSOMYG00000067064	ENSOMYG00000050197	ENSOMYG00000006643 #25	ENSOMYG00000006705 #26	ENSOMYG00000006832	rnf24 (ENSOMYG00000006938)	ENSOMYG00000007101	ENSOMYG00000007179	mogs (ENSOMYG00000007210)
Oncorhynchus_a	ANCESTRAL SPECIES	52	ENSGT00390000012242.b.a.c	ENSGT00510000046908.a.b.b	ENSGT00390000000973.a.b.h.a	ENSGT00950000183040.A.b.g.a	ENSGT00940000155128.a.b.a.b.c	ENSGT00940000155905.a.g.b	ENSGT00490000043413.t	ENSGT00530000063614.a.b.p	ENSGT00940000156432.a.d	ENSGT00940000164636	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00390000013285.g.f #20	ENSGT00940000156660.c #21	ENSGT00940000156351.l.a #22	ENSGT01030000234543.A.a.g.b.b #24	ENSGT00940000161705.c #23	ENSGT01030000234543.A.a.h.a.b #24	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.b.d	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.b.c	ENSGT00940000160795.d #25	ENSGT00950000182934.a.a.h #26	ENSGT00940000156223.s	ENSGT00940000157511.l	ENSGT00940000159443.g.b	ENSGT00530000063713.b.a.o	ENSGT00940000160184.c.b.a	ENSGT00390000017452.a	ENSGT00390000015948.a.f	ENSGT00520000055649.a.b
Chinook salmon	MODERN SPECIES	27	sparcl1 (ENSOTSG00005018508) #14	CGA (ENSOTSG00005018982)	TNIP2 (ENSOTSG00005018984)	FAM193A (ENSOTSG00005018985)	arfip1 (ENSOTSG00005019183)	FHDC1 (ENSOTSG00005019184)	trim2a (ENSOTSG00005019185)	mnd1 (ENSOTSG00005019240)	TMEM131L (ENSOTSG00005019247)	sfrp2 (ENSOTSG00005019249)	ENSOTSG00005019251	cnga1a (ENSOTSG00005019254) #17	TACR3 (ENSOTSG00005019256) #18	ENSOTSG00005019257 #20	cisd2 (ENSOTSG00005019259) #21	suclg1 (ENSOTSG00005019261) #22	ctnna2 (ENSOTSG00005019270) #24	LRRTM1 (ENSOTSG00005021160) #23	CTNNA2 (ENSOTSG00005021645) #24	ENSOTSG00005021670	ENSOTSG00005021681	ADRA1D (ENSOTSG00005021682) #25	ENSOTSG00005021684 #26	ENSOTSG00005021686	smox (ENSOTSG00005021689)	rnf24 (ENSOTSG00005021692)	GPR83 (ENSOTSG00005021695)	ankrd49 (ENSOTSG00005021710)	cntf (ENSOTSG00005021711)	ENSOTSG00005021712	FBXO41 (ENSOTSG00005021713)
Coho salmon	MODERN SPECIES	3	CGA (ENSOKIG00005018462)	ENSOKIG00005018480	FAM193A (ENSOKIG00005018499)	arfip1 (ENSOKIG00005018642)	FHDC1 (ENSOKIG00005018669)	trim2a (ENSOKIG00005018765)	mnd1 (ENSOKIG00005019609)	TMEM131L (ENSOKIG00005019636)	sfrp2 (ENSOKIG00005019671)	ENSOKIG00005019686	ENSOKIG00005019756	cnga1a (ENSOKIG00005019763) #17	TACR3 (ENSOKIG00005019778) #18	ENSOKIG00005019799 #20	cisd2 (ENSOKIG00005019887) #21	suclg1 (ENSOKIG00005019920) #22	ENSOKIG00005019981	ctnna2 (ENSOKIG00005020026) #24	LRRTM1 (ENSOKIG00005020882) #23	CTNNA2 (ENSOKIG00005020899) #24	ENSOKIG00005020941	ENSOKIG00005020977	ADRA1D (ENSOKIG00005021065) #25	ENSOKIG00005021083 #26	ENSOKIG00005021097	ENSOKIG00005021123	rnf24 (ENSOKIG00005021133)	FBXO41 (ENSOKIG00005021169)	ENSOKIG00005021223	mogs (ENSOKIG00005021227)	pdcd4a (ENSOKIG00005021291)
Huchen	MODERN SPECIES	3195														ENSHHUG00000013119 #20	cisd2 (ENSHHUG00000013136) #21	suclg1 (ENSHHUG00000013162) #22
Salmoninae	ANCESTRAL SPECIES	311	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.e.b #18	ENSGT00390000013285.g.f #20	ENSGT00940000156660.c #21	ENSGT00940000156351.l.a #22	ENSGT01030000234543.A.a.g.b #24	ENSGT00940000161705.c #23	ENSGT01030000234543.A.a.h.a.b #24	ENSGT00940000160795.d #25	ENSGT00950000182934.a.a.h #26	ENSGT00940000156223.s	ENSGT00940000157511.l	ENSGT00940000155512.q.a	ENSGT00390000013285.g.e #20	ENSGT00940000156660.d #21	ENSGT00940000156351.l.b #22	ENSGT01030000234543.A.a.g.a #24	ENSGT00940000161705.d #23	ENSGT01030000234543.A.a.h.a.a #24	ENSGT00940000160795.c #25	ENSGT00950000182934.a.a.g #26	ENSGT00940000157511.k	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b.a	ENSGT00390000017452.a	ENSGT00390000015948.a.f	ENSGT00520000055649.a.b	ENSGT00730000111690.B.g
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT00400000023138.b #15	ENSGT00510000046787.e.a.h #14	ENSGT00390000012242.b.a.d	ENSGT00510000046908.a.b.a	ENSGT00390000000973.a.b.h.b	ENSGT00950000183040.A.b.g.b	ENSGT00940000155128.a.b.a.b.d	ENSGT00940000155905.a.g.a	ENSGT00490000043413.s	ENSGT00530000063614.a.b.o	ENSGT00940000156323.c.a	ENSGT00940000156432.a.c	ENSGT00940000155512.q.a	ENSGT00390000013285.g.e #20	ENSGT00940000156660.d #21	ENSGT00940000156351.l.b #22	ENSGT01030000234543.A.a.g.a #24	ENSGT00940000161705.d #23	ENSGT01030000234543.A.a.h.a.a #24	ENSGT00940000160795.c #25	ENSGT00950000182934.a.a.g #26	ENSGT00940000157511.k	ENSGT00940000159443.g.a	ENSGT00530000063713.b.a.p	ENSGT00940000160184.c.b.b	ENSGT00390000017452.b	ENSGT00390000015948.a.e	ENSGT00520000055649.a.a	ENSGT00730000111690.B.g.c	ENSGT00520000055589.d.a.b.f	ENSGT00940000153232.a.b.a.e
Salmo	ANCESTRAL SPECIES	82	ENSGT00510000046787.e.a.h #14	ENSGT00390000012242.b.a.d	ENSGT00510000046908.a.b.a	ENSGT00390000000973.a.b.h.b	ENSGT00950000183040.A.b.g.b	ENSGT00940000155128.a.b.a.b.d	ENSGT00940000155905.a.g.a	ENSGT00490000043413.s	ENSGT00530000063614.a.b.o	ENSGT00940000156323.c.a	ENSGT00940000156432.a.c	ENSGT00940000155512.q.a	ENSGT00940000156721.x #19	ENSGT00390000013285.g.e #20	ENSGT00940000156660.d #21	ENSGT00940000156351.l.b #22	ENSGT01030000234543.A.a.g.b.a.b #24	ENSGT00940000161705.d #23	ENSGT01030000234543.A.a.h.a.a #24	ENSGT00940000160795.c #25	ENSGT00950000182934.a.a.g #26	ENSGT00940000157511.k	ENSGT00940000159443.h	ENSGT00530000063713.b.a.p	ENSGT00940000160184.c.b.b	ENSGT00390000017452.b	ENSGT00390000015948.a.e	ENSGT00520000055649.a.a	ENSGT00940000155062.a.n	ENSGT00440000033329.a.a.b.m.b #36	ENSGT00940000159796.a.a.c #37
River trout	MODERN SPECIES	2	sparcl1 (ENSSTUG00000044989) #14	CGA (ENSSTUG00000045157)	TNIP2 (ENSSTUG00000045168)	FAM193A (ENSSTUG00000045185)	arfip1 (ENSSTUG00000045286)	FHDC1 (ENSSTUG00000045308)	trim2a (ENSSTUG00000045373)	mnd1 (ENSSTUG00000045811)	TMEM131L (ENSSTUG00000045824)	ENSSTUG00000045853	sfrp2 (ENSSTUG00000045860)	ENSSTUG00000045871	bdh2 (ENSSTUG00000045915) #19	ENSSTUG00000045937 #20	cisd2 (ENSSTUG00000046004) #21	suclg1 (ENSSTUG00000046010) #22	ctnna2 (ENSSTUG00000046094) #24	LRRTM1 (ENSSTUG00000046676) #23	CTNNA2 (ENSSTUG00000046678) #24	ADRA1D (ENSSTUG00000046685) #25	ENSSTUG00000046698 #26	smox (ENSSTUG00000046704)	rnf24 (ENSSTUG00000046711)	ENSSTUG00000046726	FBXO41 (ENSSTUG00000046742)	mogs (ENSSTUG00000046788)	pdcd4a (ENSSTUG00000046821)	ENSSTUG00000047081	patl1 (ENSSTUG00000047084)	ENSSTUG00000047157	ENSSTUG00000047161
Atlantic salmon	MODERN SPECIES	27	sparcl1 (ENSSSAG00000015611) #14	ENSSSAG00000096347	ENSSSAG00000015561	ENSSSAG00000009541	arfip1 (ENSSSAG00000009445)	FHDC1 (ENSSSAG00000009410)	trim2a (ENSSSAG00000005112)	MND1 (ENSSSAG00000098498)	TMEM131L (ENSSSAG00000008551)	ENSSSAG00000093980	ENSSSAG00000008519	ENSSSAG00000008411	ENSSSAG00000004771 #20	ENSSSAG00000008170 #21	ENSSSAG00000103581	suclg1 (ENSSSAG00000008139) #22	ENSSSAG00000008013 #24	LRRTM1 (ENSSSAG00000083145) #23	ADRA1D (ENSSSAG00000007918) #25	ENSSSAG00000007913 #26	smox (ENSSSAG00000064759)	RNF24 (ENSSSAG00000095342)	ENSSSAG00000105176	ENSSSAG00000047010	ENSSSAG00000046984	mogs (ENSSSAG00000064563)	ENSSSAG00000043053	ENSSSAG00000042856	ENSSSAG00000041617	ENSSSAG00000041511 #36	ENSSSAG00000100733 #37
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000155800.a.b.d.a	ENSGT00940000172047.a	ENSGT00390000011412.k	ENSGT00940000155429.a.b.f.b	ENSGT00390000009819.a.a.cc.a #9	ENSGT00940000153558.e #11	ENSGT00940000155905.a.h	ENSGT00940000155905.a.g.a	ENSGT00490000043413.s	ENSGT00530000063614.a.b.o	ENSGT00940000156323.c.a	ENSGT00940000156432.a.c	ENSGT00940000155512.q.a	ENSGT00390000013285.g.e #20	ENSGT00940000156660.d #21	ENSGT00940000156351.l.b #22	ENSGT01030000234543.A.a.g.a #24	ENSGT00940000161705.d #23	ENSGT01030000234543.A.a.h.a.a #24	ENSGT00940000160795.c #25	ENSGT00950000182934.a.a.g #26	ENSGT00940000157511.k	ENSGT00940000159443.g.a	ENSGT00530000063713.b.a.p	ENSGT00940000160184.c.b.b	ENSGT00390000017452.b	ENSGT00390000015948.a.e	ENSGT00940000166931.e.b	ENSGT00520000055649.a.a	ENSGT00730000111690.B.g.c	ENSGT00940000155062.a.n
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000172047.a	ENSGT00390000011412.k	ENSGT00940000155429.a.b.f.b.a	ENSGT00940000155429.a.b.f.b.b	ENSGT00390000009819.a.a.cc.a #9	ENSGT00940000153558.e #11	ENSGT00940000155905.a.h	ENSGT00940000155905.a.g.a	ENSGT00490000043413.s	ENSGT00530000063614.a.b.o	ENSGT00940000156323.c.a	ENSGT00940000156432.a.c	ENSGT00940000155512.q.a	ENSGT00390000013285.g.e #20	ENSGT00940000156660.d #21	ENSGT00940000156351.l.b #22	ENSGT01030000234543.A.a.g.a #24	ENSGT00940000161705.d #23	ENSGT00940000160795.c #25	ENSGT00950000182934.a.a.g #26	ENSGT00940000157511.k	ENSGT00940000159443.g.a	ENSGT00530000063713.b.a.p	ENSGT00940000160184.c.b.b	ENSGT00390000017452.b	ENSGT00390000015948.a.e	ENSGT00940000166931.e.b	ENSGT00520000055649.a.a	ENSGT00730000111690.B.g.c	ENSGT00940000155062.a.n	ENSGT00440000033329.a.a.b.m.b #36
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2	casp3a (ENSOTSG00005007527)	STOX2 (ENSOTSG00005007526)	dhx15 (ENSOTSG00005007523)	ENSOTSG00005007521	mttp (ENSOTSG00005006103)	ENSOTSG00005006096	rps6 (ENSOTSG00005006006) #9	dnaja1 (ENSOTSG00005006001) #11	trim2a (ENSOTSG00005005999)	mnd1 (ENSOTSG00005005989)	TMEM131L (ENSOTSG00005005978)	sfrp2 (ENSOTSG00005005974)	ENSOTSG00005005959	ENSOTSG00005005670 #20	cisd2 (ENSOTSG00005005668) #21	suclg1 (ENSOTSG00005005666) #22	ctnna2 (ENSOTSG00005005515) #24	ENSOTSG00005005514	LRRTM1 (ENSOTSG00005005513) #23	ENSOTSG00005005512	ctnna2 (ENSOTSG00005005511) #24	ADRA1D (ENSOTSG00005005506) #25	ENSOTSG00005005504 #26	smox (ENSOTSG00005005501)	rnf24 (ENSOTSG00005005499)	FBXO41 (ENSOTSG00005005498)	ENSOTSG00005005497	ENSOTSG00005005496	pdcd4a (ENSOTSG00005003692)	patl1 (ENSOTSG00005003681)	RPS6KB2 (ENSOTSG00005001961)
Chinook salmon	MODERN SPECIES	66	STOX2 (ENSOTSG00005043798)	dhx15 (ENSOTSG00005043802)	ENSOTSG00005043803	mttp (ENSOTSG00005043810)	ENSOTSG00005044283	rps6 (ENSOTSG00005044302) #9	dnaja1 (ENSOTSG00005044308) #11	ENSOTSG00005044309	mnd1 (ENSOTSG00005044310)	TMEM131L (ENSOTSG00005044323)	ENSOTSG00005044328	sfrp2 (ENSOTSG00005019346)	ENSOTSG00005019405	ENSOTSG00005019413 #20	cisd2 (ENSOTSG00005019482) #21	suclg1 (ENSOTSG00005019483) #22	ctnna2 (ENSOTSG00005019484) #24	LRRTM1 (ENSOTSG00005019504) #23	ENSOTSG00005019505	ctnna2 (ENSOTSG00005019506) #24	ADRA1D (ENSOTSG00005019507) #25	ENSOTSG00005019510 #26	smox (ENSOTSG00005019511)	rnf24 (ENSOTSG00005019512)	FBXO41 (ENSOTSG00005019513)	ENSOTSG00005019514	ENSOTSG00005019515	pdcd4a (ENSOTSG00005019518)	patl1 (ENSOTSG00005020988)	RPS6KB2 (ENSOTSG00005020990)	ENSOTSG00005020992 #36
Coho salmon	MODERN SPECIES	27	STOX2 (ENSOKIG00005030999)	DHX15 (ENSOKIG00005030356)	ENSOKIG00005030281	MTTP (ENSOKIG00005028561)	ENSOKIG00005028436	ENSOKIG00005028403	ENSOKIG00005028306 #9	dnaja1 (ENSOKIG00005028270) #11	TRIM2 (ENSOKIG00005028122)	ENSOKIG00005028090	TMEM131L (ENSOKIG00005028035)	SFRP2 (ENSOKIG00005028021)	ENSOKIG00005027918	ENSOKIG00005027153 #20	cisd2 (ENSOKIG00005027097) #21	suclg1 (ENSOKIG00005026937) #22	ENSOKIG00005026919	ctnna2 (ENSOKIG00005026027) #24	LRRTM1 (ENSOKIG00005025973) #23	ENSOKIG00005025969	ctnna2 (ENSOKIG00005025961) #24	ADRA1D (ENSOKIG00005025944) #25	ENSOKIG00005025927 #26	smox (ENSOKIG00005017892)	rnf24 (ENSOKIG00005017879)	FBXO41 (ENSOKIG00005017837)	mogs (ENSOKIG00005017826)	ENSOKIG00005017303	ENSOKIG00005017262	patl1 (ENSOKIG00005017198)	ENSOKIG00005017183
Rainbow trout	MODERN SPECIES	10	CASP3 (ENSOMYG00000013103)	ENSOMYG00000013087	ENSOMYG00000013159	ENSOMYG00000013445	ENSOMYG00000013592	ENSOMYG00000014334	ENSOMYG00000014366 #9	ENSOMYG00000014423 #11	ENSOMYG00000014474	ENSOMYG00000015215	TMEM131L (ENSOMYG00000015228)	ENSOMYG00000015240	ENSOMYG00000015265	ENSOMYG00000015313 #20	cisd2 (ENSOMYG00000015345) #21	suclg1 (ENSOMYG00000015366) #22	ctnna2 (ENSOMYG00000015423) #24	ENSOMYG00000015450 #23	CTNNA2 (ENSOMYG00000015458) #24	adra1b (ENSOMYG00000015475) #25	ENSOMYG00000015484 #26	smox (ENSOMYG00000015547)	rnf24 (ENSOMYG00000015737)	ENSOMYG00000015762	mogs (ENSOMYG00000015792)	ENSOMYG00000015868	ENSOMYG00000016555	ENSOMYG00000016570	ENSOMYG00000010122	ENSOMYG00000061229	ENSOMYG00000007521
Huchen	MODERN SPECIES	857														ENSHHUG00000001133 #20	cisd2 (ENSHHUG00000001055) #21	suclg1 (ENSHHUG00000000901) #22	ctnna2 (ENSHHUG00000000859) #24
Otomorpha	ANCESTRAL SPECIES	57	ENSGT00390000009191	ENSGT00940000154466.cc	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a #14	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00390000005736 #16	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.f	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466.cc	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a #14	ENSGT00990000208074	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795.g #25	ENSGT00940000156325	ENSGT00940000158945.u.a	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00940000155633.D	ENSGT00530000063834.e.a	ENSGT00530000063843.b	ENSGT00940000153694.B	ENSGT00940000158957	ENSGT00940000153725.a.b.b	ENSGT00940000164537	ENSGT00940000158533
Denticle herring	MODERN SPECIES	14	cep44 (ENSDCDG00000005235)	fbxo8 (ENSDCDG00000005234)	hand2 (ENSDCDG00000005232)	hmgb2a (ENSDCDG00000005230)	galnt7 (ENSDCDG00000004931)	galntl6 (ENSDCDG00000004905)	FAM193A (ENSDCDG00000004875)	ENSDCDG00000004850	sparcl1 (ENSDCDG00000004794) #14	scpp9 (ENSDCDG00000004780)	cnga1a (ENSDCDG00000034690) #17	tacr3a (ENSDCDG00000034688) ##18	bdh2 (ENSDCDG00000034682) #19	ENSDCDG00000034669 #20	cisd2 (ENSDCDG00000034666) #21	suclg1 (ENSDCDG00000034662) #22	LRRTM1 (ENSDCDG00000034656) #23	ctnna2 (ENSDCDG00000034495) #24	fam151a (ENSDCDG00000034480)	acot11a (ENSDCDG00000034465)	ssbp3a (ENSDCDG00000033477)	mrpl37 (ENSDCDG00000033421)	CDCP2 (ENSDCDG00000033419)	tceanc2 (ENSDCDG00000033417)	tmem59 (ENSDCDG00000033414)	lrrc42 (ENSDCDG00000033413)	yipf1 (ENSDCDG00000033411)	zgc:113691 (ENSDCDG00000033410)	ndc1 (ENSDCDG00000033362)	ENSDCDG00000033358	ENSDCDG00000033357
Atlantic herring	MODERN SPECIES	14	hand2 (ENSCHAG00000024514)	SCRG1 (ENSCHAG00000024508)	hmgb2a (ENSCHAG00000024498)	galnt7 (ENSCHAG00000024324)	galntl6 (ENSCHAG00000024248)	FAM193A (ENSCHAG00000024073)	TNIP2 (ENSCHAG00000024057)	sparcl1 (ENSCHAG00000024042) #14	scpp9 (ENSCHAG00000024033)	cnga1a (ENSCHAG00000024031) #17	tacr3a (ENSCHAG00000024017) ##18	bdh2 (ENSCHAG00000023994) #19	ENSCHAG00000023975 #20	cisd2 (ENSCHAG00000023972) #21	golt1bb (ENSCHAG00000023969)	suclg1 (ENSCHAG00000023961) #22	ENSCHAG00000023958	LRRTM1 (ENSCHAG00000023953) #23	ctnna2 (ENSCHAG00000023513) #24	fam151a (ENSCHAG00000023486)	acot11a (ENSCHAG00000023188)	ssbp3a (ENSCHAG00000023155)	mrpl37 (ENSCHAG00000023143)	CDCP2 (ENSCHAG00000023133)	tceanc2 (ENSCHAG00000023129)	tmem59 (ENSCHAG00000023119)	LDLRAD1 (ENSCHAG00000023116)	lrrc42 (ENSCHAG00000023108)	yipf1 (ENSCHAG00000023107)	zgc:113691 (ENSCHAG00000023106)	ndc1 (ENSCHAG00000022949)
Otophysi	ANCESTRAL SPECIES	310					ENSGT00740000116854	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00740000117107	ENSGT00390000005736 #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT01100000263495.A.a.a	ENSGT01100000263491.a.b.b.c.a.a	ENSGT01060000250318	ENSGT00940000172214	ENSGT00740000116854	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00740000117107	ENSGT00390000005736 #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	418								ENSGT00390000005736.c #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f.b ##18	ENSGT00940000153745.b.f.a.b ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g.a.a #20	ENSGT00940000156660.b #21	ENSGT00940000156351.m #22	ENSGT01030000234543.A.a.y.a.a #24	ENSGT00940000161705.f #23	ENSGT00940000160795.e #25	ENSGT00390000013285.g.a.b #20	ENSGT00940000156660.a #21	ENSGT00940000156351.n #22	ENSGT01030000234543.A.a.y.a.b #24	ENSGT00940000161705.e #23	ENSGT01030000234543.A.a.y.b.b #24	ENSGT00940000160795.f #25	ENSGT00950000182934.a.a #26	ENSGT00940000156223.bb.a.a	ENSGT00940000157511.w.a	ENSGT00940000159443.i	ENSGT00530000063713.b.a.l
Cyprininae_a	ANCESTRAL SPECIES	76	ENSGT00940000172214.a	ENSGT00740000116854.c.a	ENSGT00740000116854.c.b	ENSGT00990000208074.a	ENSGT00400000023138.d #15	ENSGT00990000210088	ENSGT00740000117107	ENSGT00390000005736.c #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f.b ##18	ENSGT00940000156721.v #19	ENSGT00390000013285.g.b #20	ENSGT00390000013285.g.a.a #20	ENSGT00940000156660.b #21	ENSGT00940000156351.m #22	ENSGT01030000234543.A.a.y.a.a #24	ENSGT00940000161705.f #23	ENSGT00940000160795.e #25	ENSGT00950000182934.a.a.a #26	ENSGT00940000156223.bb.a.a	ENSGT00940000157511.w.a	ENSGT00940000159443.i	ENSGT00530000063713.b.a.l	ENSGT00940000160184.c.b.d	ENSGT00390000017452.e	ENSGT00940000157122.b.a.n.a	ENSGT00940000153558.d #11	ENSGT00940000155007.n.b.c #10	ENSGT00390000009819.a.a.ac.b #9	ENSGT00940000165823.b
Golden-line barbel	MODERN SPECIES	578	ENSSGRG00000037030	si:ch73-109d9.2 (ENSSGRG00000037029)	ENSSGRG00000037027	zgc:66472 (ENSSGRG00000037025)	ENSSGRG00000037024	scpp9 (ENSSGRG00000037022)	odam (ENSSGRG00000037021) #15	ENSSGRG00000037020	scpp7 (ENSSGRG00000037019)	scpp5 (ENSSGRG00000037018) #16	cnga1a (ENSSGRG00000037017) #17	tacr3a (ENSSGRG00000037016) ##18	bdh2 (ENSSGRG00000036857) #19	ENSSGRG00000036841 #20	cisd2 (ENSSGRG00000036830) #21	suclg1 (ENSSGRG00000036819) #22	ENSSGRG00000036815	TRHDE (ENSSGRG00000036791)	mdm2 (ENSSGRG00000036790)	slc35e3 (ENSSGRG00000036789)	ENSSGRG00000036783
Common carp reference	MODERN SPECIES	22	ENSCCRG00000079875	cabp2a (ENSCCRG00000013860)	ENSCCRG00000060898	ENSCCRG00000068443	ENSCCRG00000067641	ENSCCRG00000053561	ENSCCRG00000025322	zgc:66472 (ENSCCRG00000064619)	ENSCCRG00000076522 #15	scpp9 (ENSCCRG00000025859)	ENSCCRG00000054072 #16	tacr3a (ENSCCRG00000059239) ##18	bdh2 (ENSCCRG00000057131) #19	ENSCCRG00000014532 #20	cisd2 (ENSCCRG00000012777) #21	suclg1 (ENSCCRG00000054194) #22	ctnna2 (ENSCCRG00000078411) #24	LRRTM1 (ENSCCRG00000014633) #23	ADRA1D (ENSCCRG00000063398) #25	ENSCCRG00000058780	smox (ENSCCRG00000027211)	rnf24 (ENSCCRG00000044111)	ENSCCRG00000044125	ENSCCRG00000067377	mogs (ENSCCRG00000032537)	ENSCCRG00000032541	ENSCCRG00000034366	ENSCCRG00000015981	dnaja1 (ENSCCRG00000074299) #11	ENSCCRG00000021857 #10	rps6 (ENSCCRG00000021854) #9
Goldfish	MODERN SPECIES		ENSCARG00000010487	ENSCARG00000010480	ENSCARG00000010470	ENSCARG00000010465	ENSCARG00000010462	zgc:66472 (ENSCARG00000010455)	ENSCARG00000010453	scpp9 (ENSCARG00000010439)	odam (ENSCARG00000010431) #15	scpp7 (ENSCARG00000010424)	scpp5 (ENSCARG00000010419) #16	tacr3a (ENSCARG00000010410) ##18	bdh2 (ENSCARG00000010102) #19	ENSCARG00000009862 #20	cisd2 (ENSCARG00000009849) #21	suclg1 (ENSCARG00000009818) #22	ENSCARG00000009811	cfap58 (ENSCARG00000009733)	neurl1aa (ENSCARG00000009723)	SH3PXD2A (ENSCARG00000009683)	lrrc58a (ENSCARG00000009666)	fstl1a (ENSCARG00000009617)	gja8b (ENSCARG00000009598)	gja5b (ENSCARG00000009592)	bcl9 (ENSCARG00000009578)	morc3b (ENSCARG00000030064)	cryzl1 (ENSCARG00000029858)	ITSN1 (ENSCARG00000024109)	ENSCARG00000023873	pdxkb (ENSCARG00000023845)	agpat3 (ENSCARG00000023832)
Cyprininae	ANCESTRAL SPECIES	418		ENSGT00390000005736.c #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f.b ##18	ENSGT00940000153745.b.f.a.b ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g.a.a #20	ENSGT00940000156660.b #21	ENSGT00940000156351.m #22	ENSGT01030000234543.A.a.y.a.a #24	ENSGT00940000161705.f #23	ENSGT00940000160795.e #25	ENSGT00390000013285.g.a.b #20	ENSGT00940000156660.a #21	ENSGT00940000156351.n #22	ENSGT01030000234543.A.a.y.a.b #24	ENSGT00940000161705.e #23	ENSGT01030000234543.A.a.y.b.b #24	ENSGT00940000160795.f #25	ENSGT00950000182934.a.a #26	ENSGT00940000156223.bb.a.a	ENSGT00940000157511.w.a	ENSGT00940000159443.i	ENSGT00530000063713.b.a.l	ENSGT00940000160184.c.b.d	ENSGT00390000017452.e	ENSGT01100000263491.a.b.a.a.b.b.a.j.b
Goldfish	MODERN SPECIES	3250			ENSCARG00000063091	zgc:66472 (ENSCARG00000063107)	ENSCARG00000063113	odam (ENSCARG00000063121) #15	ENSCARG00000063127	scpp9 (ENSCARG00000063143)	ambn (ENSCARG00000063167)	scpp5 (ENSCARG00000063188) #16	cnga1a (ENSCARG00000063202) #17	ENSCARG00000063288	tacr3a (ENSCARG00000063296) ##18	ENSCARG00000063401 #20	cisd2 (ENSCARG00000063449) #21	suclg1 (ENSCARG00000063491) #22	fdx2 (ENSCARG00000063571)	ENSCARG00000063588	ENSCARG00000063599	ENSCARG00000063608	ENSCARG00000063619	ENSCARG00000063627	ENSCARG00000063674	ENSCARG00000063697	ENSCARG00000063708	pde6ha (ENSCARG00000063718)	rbfox2 (ENSCARG00000063730)	atf4a (ENSCARG00000063778)	ENSCARG00000063787	ENSCARG00000063799	ENSCARG00000063816
Cyprininae_a	ANCESTRAL SPECIES	622														ENSGT00390000013285.g.a.b #20	ENSGT00940000156660.a #21	ENSGT00940000156351.n #22	ENSGT01030000234543.A.a.y.a.b #24	ENSGT00940000161705.e #23	ENSGT01030000234543.A.a.y.b.b #24	ENSGT00940000160795.f #25	ENSGT00950000182934.a.a.b #26	ENSGT00940000156223.ab
Common carp reference	MODERN SPECIES	27	ENSCCRG00000068257	zgc:66472 (ENSCCRG00000021710)	ENSCCRG00000014572	odam (ENSCCRG00000014565) #15	ENSCCRG00000019667	scpp9 (ENSCCRG00000014567)	ENSCCRG00000065271	scpp5 (ENSCCRG00000014558) #16	scpp7 (ENSCCRG00000074859)	enam (ENSCCRG00000063328)	cnga1a (ENSCCRG00000014555) #17	tacr3a (ENSCCRG00000014551) ##18	bdh2 (ENSCCRG00000014537) #19	ENSCCRG00000012774 #20	cisd2 (ENSCCRG00000013035) #21	suclg1 (ENSCCRG00000063913) #22	ctnna2 (ENSCCRG00000006227) #24	LRRTM1 (ENSCCRG00000064909) #23	ADRA1D (ENSCCRG00000027198) #25	ENSCCRG00000036099 #26	ENSCCRG00000044555	smox (ENSCCRG00000044542)	rnf24 (ENSCCRG00000077886)	ENSCCRG00000044144	ENSCCRG00000064028	mogs (ENSCCRG00000044133)	ENSCCRG00000012614	dnaja1 (ENSCCRG00000076534) #11	ENSCCRG00000012289 #10	rps6 (ENSCCRG00000012297) #9	ENSCCRG00000012309
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3908																suclg1 (ENSSGRG00000008493) #22
Golden-line barbel	MODERN SPECIES	16	ENSSGRG00000038863	ENSSGRG00000038865	ENSSGRG00000038866	zgc:66472 (ENSSGRG00000038869)	ENSSGRG00000038871	ENSSGRG00000038873	scpp9 (ENSSGRG00000038876)	odam (ENSSGRG00000038878) #15	ambn (ENSSGRG00000038880)	scpp7 (ENSSGRG00000038881)	scpp5 (ENSSGRG00000038882) #16	cnga1a (ENSSGRG00000038884) #17	tacr3a (ENSSGRG00000038885) ##18	bdh2 (ENSSGRG00000038886) #19	cisd2 (ENSSGRG00000038892) #21	suclg1 (ENSSGRG00000038896) #22	ctnna2 (ENSSGRG00000038927) #24	LRRTM1 (ENSSGRG00000039466) #23	ENSSGRG00000039470 #24	ADRA1D (ENSSGRG00000039478) #25	ENSSGRG00000039482 #26	ENSSGRG00000039485	smox (ENSSGRG00000039486)	smox (ENSSGRG00000039487)	rnf24 (ENSSGRG00000039489)	FBXO41 (ENSSGRG00000039491)	ENSSGRG00000039493	mogs (ENSSGRG00000039494)	ENSSGRG00000039495	ENSSGRG00000039500	ENSSGRG00000039501
Zebrafish	MODERN SPECIES		zgc:66472 (ENSDARG00000075916)	ENSDARG00000076277	ENSDARG00000095949	scpp9 (ENSDARG00000087178)	odam (ENSDARG00000074476) #15	ENSDARG00000094910	ambn (ENSDARG00000075598)	scpp7 (ENSDARG00000074132)	scpp5 (ENSDARG00000078622) #16	enam (ENSDARG00000092730)	cnga1a (ENSDARG00000029898) #17	tacr3a (ENSDARG00000075112) ##18	bdh2 (ENSDARG00000052696) #19	SLC9B2 (ENSDARG00000052700) #20	cisd2 (ENSDARG00000052703) #21	suclg1 (ENSDARG00000052712) #22	LRRTM1 (ENSDARG00000052713) #23	ENSDARG00000087061	ctnna2 (ENSDARG00000024785) #24	ADRA1D (ENSDARG00000024101) #25	ENSDARG00000060264	smox (ENSDARG00000036967)	rnf24 (ENSDARG00000036965)	FBXO41 (ENSDARG00000078908)	mogs (ENSDARG00000060252)	ENSDARG00000075194	ENSDARG00000092551	ENSDARG00000078016	ENSDARG00000075639	ENSDARG00000078108	paip2b (ENSDARG00000008706)
Characiphysae	ANCESTRAL SPECIES	114	ENSGT00940000155007.n.b #10	ENSGT00940000153558 #11	ENSGT00520000055649.a	ENSGT00940000155062.a	ENSGT00740000116854.b	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00740000117107	ENSGT00390000005736 #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00940000177029.b	ENSGT00940000154292.a.b.b	ENSGT00940000157364.B	ENSGT00940000176000	ENSGT00940000163055	ENSGT00940000158817
Characiphysae_b	ANCESTRAL SPECIES	135				ENSGT00940000155062.a	ENSGT00740000116854.b	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00740000117107	ENSGT00390000005736 #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00940000157364.B	ENSGT00940000163055	ENSGT00940000158817	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000177131
Characoidei	ANCESTRAL SPECIES	133				ENSGT00940000155062.a	ENSGT00740000116854.b.a	ENSGT00990000208074	ENSGT00400000023138 #15	ENSGT00740000117107	ENSGT00390000005736 #16	ENSGT00980000203458	ENSGT00940000156074.a.b #17	ENSGT00940000153745.b.f ##18	ENSGT00940000156721 #19	ENSGT00390000013285.g #20	ENSGT00940000156660 #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #24	ENSGT00940000161705 #23	ENSGT00940000160795 #25	ENSGT00950000182934.a.a #26	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00940000154292.a.b.b	ENSGT00940000163749.b	ENSGT00940000157364.B	ENSGT00940000163055	ENSGT00940000158817	ENSGT00940000157820.a.b
Red-bellied piranha	MODERN SPECIES	156											scpp7 (ENSPNAG00000029080)	cnga1a (ENSPNAG00000029065) #17	bdh2 (ENSPNAG00000029049) #19	ENSPNAG00000029014 #20	cisd2 (ENSPNAG00000029003) #21	suclg1 (ENSPNAG00000004480) #22	ENSPNAG00000028976	ctnna2 (ENSPNAG00000028952) #24	LRRTM1 (ENSPNAG00000028901) #23	CTNNA2 (ENSPNAG00000005916) #24	ADRA1D (ENSPNAG00000028861) #25	ENSPNAG00000028860 #26	ENSPNAG00000004447	smox (ENSPNAG00000004442)	rnf24 (ENSPNAG00000005051)	FBXO41 (ENSPNAG00000028757)	ENSPNAG00000028743	mogs (ENSPNAG00000004421)	ENSPNAG00000004415
Mexicana tetra	MODERN SPECIES	13	ENSAMXG00000030810	hpf1 (ENSAMXG00000034213)	RPS6KB2 (ENSAMXG00000004056)	ENSAMXG00000038073	ENSAMXG00000035031	scpp9 (ENSAMXG00000039551)	odam (ENSAMXG00000037617) #15	scpp7 (ENSAMXG00000033970)	scpp5 (ENSAMXG00000037331) #16	enam (ENSAMXG00000030244)	cnga1a (ENSAMXG00000043371) #17	tacr3a (ENSAMXG00000005217) ##18	bdh2 (ENSAMXG00000040462) #19	ENSAMXG00000042540 #20	cisd2 (ENSAMXG00000042295) #21	suclg1 (ENSAMXG00000005265) #22	ctnna2 (ENSAMXG00000018513) #24	LRRTM1 (ENSAMXG00000025113) #23	ppp2r2ca (ENSAMXG00000035126)	ENSAMXG00000003940	anxa5b (ENSAMXG00000003934)	anxa5b (ENSAMXG00000003930)	uchl1 (ENSAMXG00000036416)	limch1a (ENSAMXG00000039540)	exosc9 (ENSAMXG00000031976)	ENSAMXG00000003878	ENSAMXG00000034508	ENSAMXG00000025573	ENSAMXG00000035736	fat1a (ENSAMXG00000003858)	frg1 (ENSAMXG00000032700)
Electric eel	MODERN SPECIES	402											cnga1a (ENSEEEG00000018232) #17	tacr3a (ENSEEEG00000018230) ##18	bdh2 (ENSEEEG00000018225) #19	ENSEEEG00000018215 #20	cisd2 (ENSEEEG00000018214) #21	suclg1 (ENSEEEG00000018209) #22	ctnna2 (ENSEEEG00000018202) #24
Channel catfish	MODERN SPECIES	21	RPS6KB2 (ENSIPUG00000016325)	ENSIPUG00000016313	odam (ENSIPUG00000016299) #15	cnga1a (ENSIPUG00000016281) #17	tacr3 (ENSIPUG00000016246) ##18	bdh2 (ENSIPUG00000016147) #19	ENSIPUG00000016105	ENSIPUG00000016061 #20	ENSIPUG00000016048	ENSIPUG00000016044	ENSIPUG00000016037	ENSIPUG00000016001	cisd2 (ENSIPUG00000015976) #21	ENSIPUG00000015967	ENSIPUG00000015955	suclg1 (ENSIPUG00000015947) #22	ENSIPUG00000015942	rps7 (ENSIPUG00000015939)	lrrtm1 (ENSIPUG00000015932) #23	ctnna2 (ENSIPUG00000015855) #24	adra1d (ENSIPUG00000015829) #25	ENSIPUG00000015818 #26	ENSIPUG00000015778	smox (ENSIPUG00000015754)	rnf24 (ENSIPUG00000015739)	FBXO41 (ENSIPUG00000015690)	ENSIPUG00000015685	mogs (ENSIPUG00000015678)	Mogs (ENSIPUG00000015668)	ENSIPUG00000015661	nrxn1b (ENSIPUG00000015520)