Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000153770.s.a.b ##19	ENSGT00940000153094.a.b.a.b	ENSGT00940000153770.r.a.a.a.b.a.a ##19	ENSGT00940000154869.b.b.e.a.a.a ##21	ENSGT00940000153770.r.a.b.d ##19	ENSGT00940000153770.r.a.a.b.b.b ##19	ENSGT00940000153094.a.a	ENSGT00940000153770.r.a.b.c.a ##19	ENSGT00940000153770.r.b.b ##19	ENSGT00940000153094.b	ENSGT00940000154869.b.b.e.b ##21	ENSGT00940000153770.s.a.a ##19	ENSGT00940000153094.a.b.a.a	ENSGT00940000153770.r.a.a.a.b.a.b.b.b.a.a #20	ENSGT00940000154869.b.b.f #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #23	ENSGT00940000161705 #24	ENSGT00940000160795 #25	ENSGT00940000157511 #26	ENSGT00940000159443 #27	ENSGT00940000157626 #28	ENSGT01050000245143 #29	ENSGT00940000159585 #30	ENSGT00390000015020 #31	ENSGT00960000188573 #32	ENSGT00390000008453 #33	ENSGT00390000004511.d #34	ENSGT00390000004511.c.a #35	ENSGT00510000049555 #36	ENSGT01030000234607.A.a.b.b
Testudinoidea	ANCESTRAL SPECIES	37								ENSGT00940000153770.r.a.a.a.b.a.a.a ##19	ENSGT00940000154869.b.b.e.a.a.a.b.a.a ##21	ENSGT00940000153770.r.a.b.d ##19	ENSGT00940000153094.a.a.a.a.b	ENSGT00940000154869.b.b.e.a.a.b.b ##21	ENSGT00940000153770.r.a.a.b.b.a.a.a.b #19	ENSGT00940000153770.r.a.a.a.b.a.b.b.b.a.a #20	ENSGT00940000154869.b.b.f.a #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #23	ENSGT00940000161705 #24	ENSGT00940000160795 #25	ENSGT00940000157511 #26	ENSGT00940000159443 #27	ENSGT00940000157626 #28	ENSGT01050000245143 #29	ENSGT00940000159585 #30	ENSGT00390000015020 #31	ENSGT00960000188573 #32	ENSGT00390000008453 #33	ENSGT00390000004511.d #34	ENSGT00390000004511.c.a #35	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #36
Emydidae	ANCESTRAL SPECIES	1	ENSGT00390000006413 #7	ENSGT00940000153203.A.b #8	ENSGT00940000156588 #9	ENSGT00940000173644 #10	ENSGT00950000185620 #11	ENSGT00940000161244 #12	ENSGT00940000156114 #13	ENSGT00940000155135 #14	ENSGT00940000158503 #15	ENSGT00940000165574 #16	ENSGT00940000158121 #17	ENSGT00390000004352 #18	ENSGT00940000153770.r.a.a.b.b.a.a.a.b #19	ENSGT00940000153770.r.a.a.a.b.a.b.b.b.a.a #20	ENSGT00940000154869.b.b.f.a #21	ENSGT00940000156351 #22	ENSGT01030000234543.A.a #23	ENSGT00940000161705 #24	ENSGT00940000160795 #25	ENSGT00940000157511 #26	ENSGT00940000159443 #27	ENSGT00940000157626 #28	ENSGT01050000245143 #29	ENSGT00940000159585 #30	ENSGT00390000015020 #31	ENSGT00960000188573 #32	ENSGT00390000008453 #33	ENSGT00390000004511.d #34	ENSGT00390000004511.c.a #35	ENSGT00510000049555 #36	ENSGT00940000154078.b #37
Three-toed box turtle	MODERN SPECIES	26	ENSTMTG00000003046 ##19	ENSTMTG00000003060 ##19	ENSTMTG00000003068 ##19	ENSTMTG00000003078 ##19	ENSTMTG00000003089 ##19	ENSTMTG00000003120	ENSTMTG00000003129 ##19	ENSTMTG00000003137	ENSTMTG00000000087 ##19	ENSTMTG00000000119 ##19	ENSTMTG00000000136 ##21	ENSTMTG00000000213 ##21	ENSTMTG00000000226 ##19	ENSTMTG00000000242 #20	ENSTMTG00000000266 #21	SUCLG1 (ENSTMTG00000000283) #22	ENSTMTG00000000332 #23	LRRTM1 (ENSTMTG00000000395) #24	CTNNA2 (ENSTMTG00000000422) #23	ADRA1D (ENSTMTG00000000479) #25	SMOX (ENSTMTG00000000499) #26	RNF24 (ENSTMTG00000000512) #27	ENSTMTG00000000525 #28	ENSTMTG00000000531 #28	ENSTMTG00000000546 #29	PTPRA (ENSTMTG00000000564) #30	ENSTMTG00000000589 #32	MRPS26 (ENSTMTG00000000595) #33	ENSTMTG00000000607 #34	ENSTMTG00000000623 #35	UBOX5 (ENSTMTG00000000649) #36
painted turtle	MODERN SPECIES	725	SMYD1 (ENSCPBG00000001374) #13	FABP1 (ENSCPBG00000001384) #14	THNSL2 (ENSCPBG00000001406) #15	ENSCPBG00000001431 #15	ENSCPBG00000001450	ENSCPBG00000001463 #16	EIF2AK3 (ENSCPBG00000001482) #17	RPIA (ENSCPBG00000001505) #18	ENSCPBG00000001567 #19	ENSCPBG00000002058 ##19	ENSCPBG00000002070 ##19	ENSCPBG00000002087 ##19	ENSCPBG00000002115 ##19	ENSCPBG00000002126 ##19	ENSCPBG00000002137	SUCLG1 (ENSCPBG00000002163) #22
Testudinidae	ANCESTRAL SPECIES	31													ENSGT00940000153770.r.a.a.a.b.a.b.b.b.b.b.a.a.a ##19	ENSGT00940000153094.a.b.b	ENSGT00940000154869.b.b.f.a.a #21	ENSGT00940000156351 #22	ENSGT00390000016232.o	ENSGT00940000161705 #24	ENSGT01030000234543.A.a #23	ENSGT00940000160795 #25	ENSGT00940000157511 #26	ENSGT00940000159443 #27	ENSGT00940000157626 #28	ENSGT01050000245143 #29	ENSGT00940000159585 #30	ENSGT00960000188573 #32	ENSGT00390000008453 #33	ENSGT00390000004511.d #34	ENSGT00390000004511.c.a #35	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #36
Goode s thornscrub tortoise	MODERN SPECIES	19	ENSGEVG00005000180 ##19	ENSGEVG00005000162 ##21	ENSGEVG00005000149 ##19	ENSGEVG00005000135 ##21	ENSGEVG00005020971	ENSGEVG00005020968 ##19	ENSGEVG00005020965 #19	ENSGEVG00005020960 ##19	ENSGEVG00005020956 ##19	ENSGEVG00005020955	ENSGEVG00005020954 #21	ENSGEVG00005020953 ##21	ENSGEVG00005020951 #21	ENSGEVG00005020949 ##21	ENSGEVG00005020948 #21	SUCLG1 (ENSGEVG00005020946) #22	ENSGEVG00005020944	ENSGEVG00005020938 #23	LRRTM1 (ENSGEVG00005020934) #24	CTNNA2 (ENSGEVG00005020931) #23	ADRA1D (ENSGEVG00005020927) #25	SMOX (ENSGEVG00005020920) #26	RNF24 (ENSGEVG00005020916) #27	ENSGEVG00005020910 #28	ENSGEVG00005020907 #28	ENSGEVG00005020905 #29	PTPRA (ENSGEVG00005020899) #30	ENSGEVG00005020896 #32	MRPS26 (ENSGEVG00005020893) #33	ENSGEVG00005020891 #34	ENSGEVG00005020885 #35
Abingdon island giant tortoise	MODERN SPECIES	409																SUCLG1 (ENSCABG00000014411) #22
Chinese turtle	MODERN SPECIES	1464										ENSPSIG00000007982 #19	ENSPSIG00000000926	ENSPSIG00000000888 #20	ENSPSIG00000007903 #20	ENSPSIG00000000845	ENSPSIG00000000821	SUCLG1 (ENSPSIG00000007650) #22	ENSPSIG00000007460 #23	LRRTM1 (ENSPSIG00000000790) #24	CTNNA2 (ENSPSIG00000007147) #23	ENSPSIG00000000726	ENSPSIG00000006846	ENSPSIG00000000696