Artiodactyla_a ANCESTRAL SPECIES 1 ENSGT00940000163435.e.a ##9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00390000001189.b ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT01070000254034 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 Artiodactyla_b ANCESTRAL SPECIES 1 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00390000001189.b ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT01070000254034 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 Cetacea ANCESTRAL SPECIES 4 ENSGT00940000163435.f #9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00390000001189.b ENSGT00940000155904.e.b #14 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00940000162915 #16 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426.d ##34 ENSGT00390000009426.c.a.a.a #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Odontoceti ANCESTRAL SPECIES 4 ENSGT00940000164125 #8 ENSGT00940000163435.f #9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00390000001189.b ENSGT00940000155904.e.b #14 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426.d ##34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 ENSGT00940000157182 Odontoceti_a ANCESTRAL SPECIES 4 ENSGT00940000164125 #8 ENSGT00940000163435.f #9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00390000001189.b ENSGT00940000155904.e.b #14 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431.jb #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426.d ##34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 ENSGT00940000157182 Odontoceti_b ANCESTRAL SPECIES 4 ENSGT00940000159796 #7 ENSGT00940000164125 #8 ENSGT00940000163435.f #9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431.jb #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00390000018351.n #26 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426.d ##34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Monodontidae ANCESTRAL SPECIES 2 ENSGT00940000164125 #8 ENSGT00940000163435.f #9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00940000162915 #16 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431.jb #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00390000018351.n #26 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426.c.a.a.a #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Narwhal MODERN SPECIES 314 CABP2 (ENSMMNG00015020136) #7 ENSMMNG00015020200 #8 ENSMMNG00015020229 #9 NDUFV1 (ENSMMNG00015020258) #10 ENSMMNG00015020291 #11 ENSMMNG00015020305 #12 TBX10 (ENSMMNG00015020328) #13 ALDH3B2 (ENSMMNG00015020368) #14 UNC93B1 (ENSMMNG00015020395) #15 ALDH3B1 (ENSMMNG00015020460) #16 NDUFS8 (ENSMMNG00015020550) #17 TCIRG1 (ENSMMNG00015020611) #18 CHKA (ENSMMNG00015020690) #19 KMT5B (ENSMMNG00015020754) #20 ENSMMNG00015020790 #21 LRP5 (ENSMMNG00015020832) #22 PPP6R3 (ENSMMNG00015020961) #23 GAL (ENSMMNG00015021087) #24 TESMIN (ENSMMNG00015021117) #25 GATC (ENSMMNG00015021129) #26 CPT1A (ENSMMNG00015021158) #27 MRPL21 (ENSMMNG00015021206) #28 IGHMBP2 (ENSMMNG00015021229) #29 ENSMMNG00015021257 #30 MRGPRF (ENSMMNG00015021269) #31 TPCN2 (ENSMMNG00015021380) #32 CCND1 (ENSMMNG00015021479) #33 ENSMMNG00015021499 #34 FGF19 (ENSMMNG00015021518) #35 FGF4 (ENSMMNG00015021528) #36 ENSMMNG00015021536 #37 Beluga whale MODERN SPECIES 7 CABP2 (ENSDLEG00000007398) #7 ENSDLEG00000007392 #8 ENSDLEG00000007379 #9 NDUFV1 (ENSDLEG00000007370) #10 ENSDLEG00000007368 #11 ENSDLEG00000007357 #12 TBX10 (ENSDLEG00000007345) #13 ENSDLEG00000007341 #14 UNC93B1 (ENSDLEG00000007327) #15 ENSDLEG00000007316 ##14 NDUFS8 (ENSDLEG00000007301) #17 TCIRG1 (ENSDLEG00000007283) #18 CHKA (ENSDLEG00000007265) #19 KMT5B (ENSDLEG00000007251) #20 ENSDLEG00000007238 #21 LRP5 (ENSDLEG00000006885) #22 PPP6R3 (ENSDLEG00000006813) #23 GAL (ENSDLEG00000006803) #24 ENSDLEG00000006799 #26 TESMIN (ENSDLEG00000006791) #25 CPT1A (ENSDLEG00000006719) #27 MRPL21 (ENSDLEG00000006686) #28 IGHMBP2 (ENSDLEG00000006566) #29 ENSDLEG00000006544 #30 MRGPRF (ENSDLEG00000006538) #31 TPCN2 (ENSDLEG00000006495) #32 CCND1 (ENSDLEG00000006485) #33 ENSDLEG00000006473 ENSDLEG00000006464 #35 FGF4 (ENSDLEG00000006458) #36 FGF3 (ENSDLEG00000006451) #37 Vaquita MODERN SPECIES 19 CDK2AP2 (ENSPSNG00000011634) CABP2 (ENSPSNG00000011691) #7 ENSPSNG00000011890 #8 ENSPSNG00000012038 #9 NDUFV1 (ENSPSNG00000012099) #10 ENSPSNG00000012192 #12 TBX10 (ENSPSNG00000012218) #13 ALDH3B2 (ENSPSNG00000012373) #14 UNC93B1 (ENSPSNG00000012748) #15 ENSPSNG00000012832 ##14 NDUFS8 (ENSPSNG00000013024) #17 TCIRG1 (ENSPSNG00000013176) #18 CHKA (ENSPSNG00000013362) #19 KMT5B (ENSPSNG00000013500) #20 ENSPSNG00000013665 #21 LRP5 (ENSPSNG00000013733) #22 PPP6R3 (ENSPSNG00000014158) #23 GAL (ENSPSNG00000015309) #24 TESMIN (ENSPSNG00000015408) #25 ENSPSNG00000015638 #26 CPT1A (ENSPSNG00000015716) #27 MRPL21 (ENSPSNG00000015914) #28 IGHMBP2 (ENSPSNG00000016024) #29 MRGPRF (ENSPSNG00000016200) #31 TPCN2 (ENSPSNG00000016263) #32 CCND1 (ENSPSNG00000016389) #33 ENSPSNG00000016465 ##34 FGF19 (ENSPSNG00000016539) #35 FGF4 (ENSPSNG00000016594) #36 ENSPSNG00000016648 #37 ANO1 (ENSPSNG00000016772) Dolphin MODERN SPECIES 1371 LRP5 (ENSTTRG00000016402) #22 PPP6R3 (ENSTTRG00000016403) #23 Sperm whale DUPLICATION Sperm whale MODERN SPECIES 7 ANKRD13D (ENSPCTG00005010564) SSH3 (ENSPCTG00005010770) POLD4 (ENSPCTG00005011022) CLCF1 (ENSPCTG00005011093) ENSPCTG00005011165 #10 ENSPCTG00005011185 #10 ENSPCTG00005011240 #12 ENSPCTG00005011272 #8 UNC93B1 (ENSPCTG00005011356) #15 ALDH3B1 (ENSPCTG00005011416) #16 NDUFS8 (ENSPCTG00005011545) #17 TCIRG1 (ENSPCTG00005011681) #18 CHKA (ENSPCTG00005011739) #19 KMT5B (ENSPCTG00005012015) #20 C16H11orf24 (ENSPCTG00005012094) #21 LRP5 (ENSPCTG00005012293) #22 PPP6R3 (ENSPCTG00005014547) #23 ENSPCTG00005014980 GAL (ENSPCTG00005014998) #24 TESMIN (ENSPCTG00005015085) #25 Sperm whale MODERN SPECIES 1098 ENSPCTG00005013393 #22 Blue whale MODERN SPECIES 19 PITPNM1 (ENSBMSG00010004775) CABP2 (ENSBMSG00010004797) #7 ENSBMSG00010004811 #8 ENSBMSG00010004827 #9 NDUFV1 (ENSBMSG00010004841) #10 ENSBMSG00010004866 #11 ENSBMSG00010004879 #12 TBX10 (ENSBMSG00010004883) #13 ALDH3B2 (ENSBMSG00010004892) #14 UNC93B1 (ENSBMSG00010004898) #15 ALDH3B1 (ENSBMSG00010004922) #16 NDUFS8 (ENSBMSG00010004952) #17 CHKA (ENSBMSG00010004966) #19 KMT5B (ENSBMSG00010004978) #20 ENSBMSG00010004983 LRP5 (ENSBMSG00010004990) #22 PPP6R3 (ENSBMSG00010005022) #23 GAL (ENSBMSG00010005047) #24 CPT1A (ENSBMSG00010005084) #27 ENSBMSG00010005133 #26 MRPL21 (ENSBMSG00010005141) #28 IGHMBP2 (ENSBMSG00010005154) #29 MRGPRF (ENSBMSG00010005176) #31 TPCN2 (ENSBMSG00010005216) #32 CCND1 (ENSBMSG00010005276) #33 ENSBMSG00010005297 #34 FGF19 (ENSBMSG00010005311) #35 FGF4 (ENSBMSG00010005321) #36 FGF3 (ENSBMSG00010005331) #37 ANO1 (ENSBMSG00010005353) FADD (ENSBMSG00010005386) Pecora ANCESTRAL SPECIES 13 ENSGT00940000163435.f #9 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Yarkand deer MODERN SPECIES 11 ENSCHYG00000003387 #8 ENSCHYG00000003427 NDUFV1 (ENSCHYG00000003440) #10 ENSCHYG00000003458 #11 ENSCHYG00000003477 #12 TBX10 (ENSCHYG00000003486) #13 ALDH3B2 (ENSCHYG00000003514) #14 ENSCHYG00000003548 UNC93B1 (ENSCHYG00000003557) #15 ALDH3B1 (ENSCHYG00000003612) #16 NDUFS8 (ENSCHYG00000003690) #17 TCIRG1 (ENSCHYG00000003734) #18 CHKA (ENSCHYG00000003799) #19 KMT5B (ENSCHYG00000003849) #20 ENSCHYG00000003880 LRP5 (ENSCHYG00000003897) #22 PPP6R3 (ENSCHYG00000003967) #23 GAL (ENSCHYG00000004104) #24 TESMIN (ENSCHYG00000004115) #25 CPT1A (ENSCHYG00000004136) #27 ENSCHYG00000004181 #28 IGHMBP2 (ENSCHYG00000004233) #29 ENSCHYG00000004308 ##31 ENSCHYG00000004314 #30 MRGPRF (ENSCHYG00000000036) #31 TPCN2 (ENSCHYG00000000093) #32 CCND1 (ENSCHYG00000000255) #33 LTO1 (ENSCHYG00000000282) #34 FGF19 (ENSCHYG00000000308) #35 FGF4 (ENSCHYG00000000320) #36 FGF3 (ENSCHYG00000000327) #37 Percora_a ANCESTRAL SPECIES 16 ENSGT00940000163435.f #9 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Siberian musk deer MODERN SPECIES 1226 ENSMMSG00000023744 #8 ENSMMSG00000023730 #9 NDUFV1 (ENSMMSG00000023713) #10 ENSMMSG00000023708 #11 ENSMMSG00000023706 ENSMMSG00000023700 #12 TBX10 (ENSMMSG00000023697) #13 ALDH3B2 (ENSMMSG00000023685) #14 UNC93B1 (ENSMMSG00000023668) #15 ENSMMSG00000023640 ##14 NDUFS8 (ENSMMSG00000023617) #17 TCIRG1 (ENSMMSG00000023600) #18 CHKA (ENSMMSG00000023562) #19 KMT5B (ENSMMSG00000023533) #20 ENSMMSG00000023522 #21 LRP5 (ENSMMSG00000023500) #22 PPP6R3 (ENSMMSG00000023347) #23 GAL (ENSMMSG00000023307) #24 TESMIN (ENSMMSG00000023272) #25 CPT1A (ENSMMSG00000023241) #27 MRPL21 (ENSMMSG00000023225) #28 IGHMBP2 (ENSMMSG00000023204) #29 ENSMMSG00000023188 #30 MRGPRF (ENSMMSG00000023179) #31 TPCN2 (ENSMMSG00000023131) #32 CCND1 (ENSMMSG00000023111) #33 LTO1 (ENSMMSG00000023097) #34 FGF19 (ENSMMSG00000023088) #35 FGF4 (ENSMMSG00000023082) #36 FGF3 (ENSMMSG00000023074) #37 Bovidae ANCESTRAL SPECIES 16 ENSGT00940000163435.f #9 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Caprinae ANCESTRAL SPECIES 20 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000163374.g ENSGT00940000163889 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 ENSGT00940000157182 Rambouillet Sheep MODERN SPECIES 13 ENSOARG00020013487 #9 NDUFV1 (ENSOARG00020013585) #10 ENSOARG00020013607 #11 NUDT8 (ENSOARG00020013703) TBX10 (ENSOARG00020013801) #13 ALDH3B2 (ENSOARG00020013912) #14 ENSOARG00020014001 UNC93B1 (ENSOARG00020014035) #15 ENSOARG00020014110 ##14 NDUFS8 (ENSOARG00020014383) #17 ENSOARG00020014473 #18 ENSOARG00020014508 #18 CHKA (ENSOARG00020014607) #19 KMT5B (ENSOARG00020014904) #20 ENSOARG00020015122 #21 LRP5 (ENSOARG00020015176) #22 PPP6R3 (ENSOARG00020015496) #23 GAL (ENSOARG00020016179) #24 TESMIN (ENSOARG00020016224) #25 CPT1A (ENSOARG00020016497) #27 ENSOARG00020016650 ENSOARG00020016715 #28 IGHMBP2 (ENSOARG00020016777) #29 ENSOARG00020016943 #30 MRGPRF (ENSOARG00020017039) #31 SMIM38 (ENSOARG00020017868) CCND1 (ENSOARG00020018440) #33 LTO1 (ENSOARG00020018493) #34 FGF19 (ENSOARG00020018648) #35 FGF4 (ENSOARG00020018705) #36 FGF3 (ENSOARG00020018755) #37 Goat MODERN SPECIES 21 CABP2 (ENSCHIG00000009106) #7 ENSCHIG00000015669 #8 ENSCHIG00000014133 #9 NDUFV1 (ENSCHIG00000022888) #10 ENSCHIG00000020228 #11 ENSCHIG00000019709 #12 ENSCHIG00000026949 ALDH3B2 (ENSCHIG00000016769) #14 UNC93B1 (ENSCHIG00000026943) #15 ENSCHIG00000026059 ##14 ENSCHIG00000013308 #17 TCIRG1 (ENSCHIG00000021975) #18 CHKA (ENSCHIG00000014786) #19 KMT5B (ENSCHIG00000025585) #20 ENSCHIG00000016165 #21 LRP5 (ENSCHIG00000019530) #22 PPP6R3 (ENSCHIG00000020367) #23 GAL (ENSCHIG00000024788) #24 TESMIN (ENSCHIG00000026439) #25 ENSCHIG00000019619 CPT1A (ENSCHIG00000015344) #27 MRPL21 (ENSCHIG00000020757) #28 IGHMBP2 (ENSCHIG00000011703) #29 ENSCHIG00000008487 ##31 MRGPRF (ENSCHIG00000024512) #31 TPCN2 (ENSCHIG00000024724) #32 CCND1 (ENSCHIG00000010534) #33 LTO1 (ENSCHIG00000016576) #34 FGF19 (ENSCHIG00000012980) #35 FGF4 (ENSCHIG00000010447) #36 FGF3 (ENSCHIG00000001606) #37 Bovinae ANCESTRAL SPECIES 24 ENSGT00940000163435.f #9 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 American bison MODERN SPECIES 3011 CDK2AP2 (ENSBBBG00000011578) CABP2 (ENSBBBG00000002134) #7 ENSBBBG00000011647 #8 ENSBBBG00000011688 #9 NDUFV1 (ENSBBBG00000006837) #10 ENSBBBG00000002170 #12 TBX10 (ENSBBBG00000011733) #13 ALDH3B2 (ENSBBBG00000011745) #14 UNC93B1 (ENSBBBG00000011762) #15 ENSBBBG00000008099 ##14 NDUFS8 (ENSBBBG00000011803) #17 TCIRG1 (ENSBBBG00000011829) #18 CHKA (ENSBBBG00000002204) #19 KMT5B (ENSBBBG00000011927) #20 ENSBBBG00000008495 #21 LRP5 (ENSBBBG00000007211) #22 PPP6R3 (ENSBBBG00000002323) #23 GAL (ENSBBBG00000007883) #24 TESMIN (ENSBBBG00000012323) #25 CPT1A (ENSBBBG00000012354) #27 MRPL21 (ENSBBBG00000002340) #28 ENSBBBG00000012361 MRGPRD (ENSBBBG00000002343) #30 MRGPRF (ENSBBBG00000012368) #31 TPCN2 (ENSBBBG00000012427) #32 ENSBBBG00000002380 #33 ENSBBBG00000002382 #33 LTO1 (ENSBBBG00000012464) #34 FGF19 (ENSBBBG00000012472) #35 FGF4 (ENSBBBG00000012474) #36 ANO1 (ENSBBBG00000012506) Bos ANCESTRAL SPECIES 11 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Bos_b ANCESTRAL SPECIES 10 ENSGT00940000164125 #8 ENSGT00940000163435.f #9 ENSGT01100000264273 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 Hybrid Bos Indicus MODERN SPECIES 21 CABP2 (ENSBIXG00005021047) #7 ENSBIXG00005021109 #9 ENSBIXG00005021129 NDUFV1 (ENSBIXG00005021193) #10 ENSBIXG00005007675 #11 TBX10 (ENSBIXG00005021245) #13 ENSBIXG00005021275 #14 UNC93B1 (ENSBIXG00005021297) #15 ENSBIXG00005021420 ##14 NDUFS8 (ENSBIXG00005006662) #17 TCIRG1 (ENSBIXG00005021556) #18 ENSBIXG00005006157 #19 KMT5B (ENSBIXG00005021706) #20 ENSBIXG00005021733 #21 ENSBIXG00005021753 LRP5 (ENSBIXG00005005995) #22 PPP6R3 (ENSBIXG00005003728) #23 ENSBIXG00005022087 #24 TESMIN (ENSBIXG00005022165) #25 CPT1A (ENSBIXG00005022352) #27 ENSBIXG00005022450 #28 IGHMBP2 (ENSBIXG00005022495) #29 ENSBIXG00005022523 ##31 ENSBIXG00005022549 #30 MRGPRF (ENSBIXG00005022567) #31 TPCN2 (ENSBIXG00005005450) #32 CCND1 (ENSBIXG00005003878) #33 LTO1 (ENSBIXG00005022702) #34 FGF19 (ENSBIXG00005022715) #35 FGF4 (ENSBIXG00005022740) #36 FGF3 (ENSBIXG00005003897) #37 Cow MODERN SPECIES 21 CDK2AP2 (ENSBTAG00000002121) CABP2 (ENSBTAG00000022209) #7 GSTP1 (ENSBTAG00000003548) #8 GSTP1 (ENSBTAG00000051210) #9 NDUFV1 (ENSBTAG00000021776) #10 DOC2G (ENSBTAG00000021777) #11 TBX10 (ENSBTAG00000011816) #13 ENSBTAG00000012054 #14 UNC93B1 (ENSBTAG00000001193) #15 ALDH3B1 (ENSBTAG00000013093) ##14 NDUFS8 (ENSBTAG00000012072) #17 TCIRG1 (ENSBTAG00000000292) #18 CHKA (ENSBTAG00000010304) #19 KMT5B (ENSBTAG00000001185) #20 C29H11orf24 (ENSBTAG00000004392) #21 LRP5 (ENSBTAG00000005903) #22 ENSBTAG00000011830 PPP6R3 (ENSBTAG00000009584) #23 GAL (ENSBTAG00000009393) #24 TESMIN (ENSBTAG00000053218) #25 CPT1A (ENSBTAG00000021999) #27 MRPL21 (ENSBTAG00000004348) #28 IGHMBP2 (ENSBTAG00000022185) #29 ENSBTAG00000046090 ##31 ENSBTAG00000016774 #30 MRGPRF (ENSBTAG00000015185) #31 TPCN2 (ENSBTAG00000015183) #32 LTO1 (ENSBTAG00000011898) CCND1 (ENSBTAG00000017514) #33 FGF19 (ENSBTAG00000017285) #35 FGF4 (ENSBTAG00000012563) #36 Bos_a ANCESTRAL SPECIES 34 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000162775 #12 ENSGT00940000154816.a.a #13 ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000155904.e.a ##14 ENSGT00940000155904.f ##14 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.b.b.d ##31 ENSGT01030000234639.A.b.a.b.b.c #30 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00990000205605 ENSGT00940000160601 #35 ENSGT00940000158825 #36 Wild yak DUPLICATION Wild yak MODERN SPECIES 2316 ENSBMUG00000004387 ##14 NDUFS8 (ENSBMUG00000004400) #17 TCIRG1 (ENSBMUG00000004675) #18 CHKA (ENSBMUG00000005017) #19 KMT5B (ENSBMUG00000005099) #20 ENSBMUG00000005121 #21 ENSBMUG00000005125 ENSBMUG00000005142 #22 ENSBMUG00000005168 #22 PPP6R3 (ENSBMUG00000005493) #23 GAL (ENSBMUG00000005636) #24 TESMIN (ENSBMUG00000005656) #25 CPT1A (ENSBMUG00000005671) #27 MRPL21 (ENSBMUG00000005686) #28 IGHMBP2 (ENSBMUG00000005704) #29 ENSBMUG00000005724 ##31 ENSBMUG00000005759 #30 MRGPRF (ENSBMUG00000005775) #31 TPCN2 (ENSBMUG00000005793) #32 ENSBMUG00000005824 #33 ENSBMUG00000005837 #33 LTO1 (ENSBMUG00000005875) #34 ENSBMUG00000005895 #36 Wild yak MODERN SPECIES 2316 ENSBMUG00000004387 ##14 NDUFS8 (ENSBMUG00000004400) #17 TCIRG1 (ENSBMUG00000004675) #18 CHKA (ENSBMUG00000005017) #19 KMT5B (ENSBMUG00000005099) #20 ENSBMUG00000005121 #21 ENSBMUG00000005125 ENSBMUG00000005142 #22 ENSBMUG00000005168 #22 PPP6R3 (ENSBMUG00000005493) #23 GAL (ENSBMUG00000005636) #24 TESMIN (ENSBMUG00000005656) #25 CPT1A (ENSBMUG00000005671) #27 MRPL21 (ENSBMUG00000005686) #28 IGHMBP2 (ENSBMUG00000005704) #29 ENSBMUG00000005724 ##31 ENSBMUG00000005759 #30 MRGPRF (ENSBMUG00000005775) #31 TPCN2 (ENSBMUG00000005793) #32 ENSBMUG00000005824 #33 ENSBMUG00000005837 #33 LTO1 (ENSBMUG00000005875) #34 ENSBMUG00000005895 #36 ANO1 (ENSBMUG00000005970) Camelidae ANCESTRAL SPECIES 18 ENSGT00940000164125 #8 ENSGT00940000163435.e.a ##9 ENSGT00390000010641 #10 ENSGT00940000162875 #11 ENSGT00940000163889 ENSGT00940000163374.g ENSGT00940000155904.e.b #14 ENSGT00960000191071 ENSGT00530000063359.B #15 ENSGT00940000162915 #16 ENSGT00390000003049 #17 ENSGT00950000182881.a.b.a.b #18 ENSGT00950000182939.a.b.b #19 ENSGT00940000156431 #20 ENSGT00940000153377.B #21 ENSGT00940000156574.C #22 ENSGT00390000009899.a.d #23 ENSGT00390000009663 #24 ENSGT00940000161379 #25 ENSGT01060000248595.b.a.b.a #27 ENSGT00390000005535 #28 ENSGT00930000151035.a #29 ENSGT01030000234639.A.b.a.a #31 ENSGT00940000159763 #32 ENSGT00940000157816 #33 ENSGT00390000009426 #34 ENSGT00940000160601 #35 ENSGT00940000158825 #36 ENSGT00940000161128 #37 ENSGT00940000157182 ENSGT00390000002105 Arabian camel MODERN SPECIES 1 ENSCDRG00005010431 #8 GSTP1-1 (ENSCDRG00005010333) ##9 NDUFV1 (ENSCDRG00005010077) #10 ENSCDRG00005010025 #11 NUDT8 (ENSCDRG00005009988) ENSCDRG00005009949 ALDH3B2 (ENSCDRG00005009823) #14 ENSCDRG00005009764 UNC93B1 (ENSCDRG00005009668) #15 ALDH3B1 (ENSCDRG00005009325) #16 NDUFS8 (ENSCDRG00005009196) #17 TCIRG1 (ENSCDRG00005009035) #18 CHKA (ENSCDRG00005008677) #19 KMT5B (ENSCDRG00005008575) #20 ENSCDRG00005008524 #21 ENSCDRG00005008491 #22 PPP6R3 (ENSCDRG00005007732) #23 GAL (ENSCDRG00005007648) #24 TESMIN (ENSCDRG00005007444) #25 CPT1A (ENSCDRG00005007333) #27 MRPL21 (ENSCDRG00005007269) #28 IGHMBP2 (ENSCDRG00005007128) #29 MRGPRF (ENSCDRG00005007035) #31 TPCN2 (ENSCDRG00005006714) #32 CCND1 (ENSCDRG00005006610) #33 LTO1 (ENSCDRG00005021470) #34 FGF19 (ENSCDRG00005021465) #35 FGF4 (ENSCDRG00005021463) #36 ENSCDRG00005021451 #37 ANO1 (ENSCDRG00005021443) FADD (ENSCDRG00005021431)