Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Guinea pig	MODERN SPECIES	42	CABP2 (ENSCPOG00000023151) #7	GSTP1 (ENSCPOG00000020253) #8	NDUFV1 (ENSCPOG00000006645) #9	ENSCPOG00000022649 #10	ENSCPOG00000002514 #11	TBX10 (ENSCPOG00000032079) #12	ACY3 (ENSCPOG00000002519) #13	ALDH3B2 (ENSCPOG00000002523) #14	UNC93B1 (ENSCPOG00000026431) #15	ALDH3B1 (ENSCPOG00000021502) #16	NDUFS8 (ENSCPOG00000001416) #17	TCIRG1 (ENSCPOG00000001417) #18	CHKA (ENSCPOG00000022236) #19	KMT5B (ENSCPOG00000002147) #20	ENSCPOG00000000621 #21	LRP5 (ENSCPOG00000008119) #22	PPP6R3 (ENSCPOG00000007353) #23	GAL (ENSCPOG00000004337) #24	TESMIN (ENSCPOG00000032989) #25	CPT1A (ENSCPOG00000004344) #26	MRPL21 (ENSCPOG00000038509) #27	IGHMBP2 (ENSCPOG00000007063) #28	MRGPRD (ENSCPOG00000025266) #29	MRGPRF (ENSCPOG00000033803) #30	TPCN2 (ENSCPOG00000002580) #31	CCND1 (ENSCPOG00000032886) #32	LTO1 (ENSCPOG00000031028) #33	FGF19 (ENSCPOG00000008147) #34	FGF4 (ENSCPOG00000013920) #35	FGF3 (ENSCPOG00000007355) #36	ANO1 (ENSCPOG00000011005) #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Long-tailed chinchilla	MODERN SPECIES	129	CABP2 (ENSCLAG00000015734) #7	GSTP1 (ENSCLAG00000015548) #8	NDUFV1 (ENSCLAG00000016746) #9	ENSCLAG00000016785 #10	ENSCLAG00000016240 #11	TBX10 (ENSCLAG00000015667) #12	ACY3 (ENSCLAG00000016314) #13	ALDH3B2 (ENSCLAG00000017296) #14	UNC93B1 (ENSCLAG00000016729) #15	ALDH3B1 (ENSCLAG00000016029) #16	NDUFS8 (ENSCLAG00000017156) #17	TCIRG1 (ENSCLAG00000014792) #18	CHKA (ENSCLAG00000014223) #19	KMT5B (ENSCLAG00000016628) #20	ENSCLAG00000017122 #21	LRP5 (ENSCLAG00000016254) #22	PPP6R3 (ENSCLAG00000015508) #23	GAL (ENSCLAG00000016374) #24	TESMIN (ENSCLAG00000015628) #25	CPT1A (ENSCLAG00000016594) #26	MRPL21 (ENSCLAG00000016038) #27	IGHMBP2 (ENSCLAG00000015500) #28	MRGPRD (ENSCLAG00000016417) #29	MRGPRF (ENSCLAG00000016323) #30	TPCN2 (ENSCLAG00000016178) #31	CCND1 (ENSCLAG00000014981) #32	LTO1 (ENSCLAG00000014111) #33	FGF19 (ENSCLAG00000015041) #34	ENSCLAG00000014848 #35	FGF3 (ENSCLAG00000015995) #36	ANO1 (ENSCLAG00000015936) #37
Degu	MODERN SPECIES	59	ENSODEG00000017726 #8	NDUFV1 (ENSODEG00000017535) #9	ENSODEG00000017660 #10	ENSODEG00000017697 #11	TBX10 (ENSODEG00000017601) #12	ACY3 (ENSODEG00000017439) #13	ALDH3B2 (ENSODEG00000017453) #14	ENSODEG00000017464	UNC93B1 (ENSODEG00000017652) #15	ALDH3B1 (ENSODEG00000017474) #16	ENSODEG00000017577 #17	TCIRG1 (ENSODEG00000017607) #18	CHKA (ENSODEG00000017808) #19	ENSODEG00000017460 #20	C11orf24 (ENSODEG00000017396) #21	LRP5 (ENSODEG00000017493) #22	ENSODEG00000020451	PPP6R3 (ENSODEG00000017311) #23	GAL (ENSODEG00000017519) #24	TESMIN (ENSODEG00000017728) #25	CPT1A (ENSODEG00000017481) #26	MRPL21 (ENSODEG00000017369) #27	IGHMBP2 (ENSODEG00000017354) #28	MRGPRD (ENSODEG00000017313) #29	MRGPRF (ENSODEG00000017539) #30	ENSODEG00000017628	ENSODEG00000017365	TPCN2 (ENSODEG00000017370) #31	CCND1 (ENSODEG00000017314) #32	LTO1 (ENSODEG00000017276) #33	FGF19 (ENSODEG00000017850) #34
Naked mole-rat female	MODERN SPECIES	14	GSTP1 (ENSHGLG00000018697) #8	NDUFV1 (ENSHGLG00000042428) #9	ENSHGLG00000048694	ENSHGLG00000018636 #10	NUDT8 (ENSHGLG00000047808)	TBX10 (ENSHGLG00000015945) #12	ACY3 (ENSHGLG00000015831) #13	ALDH3B2 (ENSHGLG00000010052) #14	UNC93B1 (ENSHGLG00000011769) #15	ALDH3B1 (ENSHGLG00000015602) #16	NDUFS8 (ENSHGLG00000009570) #17	TCIRG1 (ENSHGLG00000018395) #18	CHKA (ENSHGLG00000014648) #19	KMT5B (ENSHGLG00000014467) #20	C11orf24 (ENSHGLG00000018642) #21	LRP5 (ENSHGLG00000012372) #22	ENSHGLG00000010435 #23	GAL (ENSHGLG00000013095) #24	TESMIN (ENSHGLG00000006844) #25	CPT1A (ENSHGLG00000009799) #26	ENSHGLG00000041256	MRPL21 (ENSHGLG00000007657) #27	IGHMBP2 (ENSHGLG00000006468) #28	MRGPRD (ENSHGLG00000033970) #29	MRGPRF (ENSHGLG00000042564) #30	TPCN2 (ENSHGLG00000009786) #31	SMIM38 (ENSHGLG00000042963)	CCND1 (ENSHGLG00000039478) #32	ORAOV1 (ENSHGLG00000041285) #33	FGF19 (ENSHGLG00000049791) #34	FGF4 (ENSHGLG00000008219) #35