Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Glires	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Guinea pig	MODERN SPECIES	42	CABP2 (ENSCPOG00000023151) #7	GSTP1 (ENSCPOG00000020253) #8	NDUFV1 (ENSCPOG00000006645) #9	ENSCPOG00000022649 #10	ENSCPOG00000002514 #11	TBX10 (ENSCPOG00000032079) #12	ACY3 (ENSCPOG00000002519) #13	ALDH3B2 (ENSCPOG00000002523) #14	UNC93B1 (ENSCPOG00000026431) #15	ALDH3B1 (ENSCPOG00000021502) #16	NDUFS8 (ENSCPOG00000001416) #17	TCIRG1 (ENSCPOG00000001417) #18	CHKA (ENSCPOG00000022236) #19	KMT5B (ENSCPOG00000002147) #20	ENSCPOG00000000621 #21	LRP5 (ENSCPOG00000008119) #22	PPP6R3 (ENSCPOG00000007353) #23	GAL (ENSCPOG00000004337) #24	TESMIN (ENSCPOG00000032989) #25	CPT1A (ENSCPOG00000004344) #26	MRPL21 (ENSCPOG00000038509) #27	IGHMBP2 (ENSCPOG00000007063) #28	MRGPRD (ENSCPOG00000025266) #29	MRGPRF (ENSCPOG00000033803) #30	TPCN2 (ENSCPOG00000002580) #31	CCND1 (ENSCPOG00000032886) #32	LTO1 (ENSCPOG00000031028) #33	FGF19 (ENSCPOG00000008147) #34	FGF4 (ENSCPOG00000013920) #35	FGF3 (ENSCPOG00000007355) #36	ANO1 (ENSCPOG00000011005) #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Long-tailed chinchilla	MODERN SPECIES	129	CABP2 (ENSCLAG00000015734) #7	GSTP1 (ENSCLAG00000015548) #8	NDUFV1 (ENSCLAG00000016746) #9	ENSCLAG00000016785 #10	ENSCLAG00000016240 #11	TBX10 (ENSCLAG00000015667) #12	ACY3 (ENSCLAG00000016314) #13	ALDH3B2 (ENSCLAG00000017296) #14	UNC93B1 (ENSCLAG00000016729) #15	ALDH3B1 (ENSCLAG00000016029) #16	NDUFS8 (ENSCLAG00000017156) #17	TCIRG1 (ENSCLAG00000014792) #18	CHKA (ENSCLAG00000014223) #19	KMT5B (ENSCLAG00000016628) #20	ENSCLAG00000017122 #21	LRP5 (ENSCLAG00000016254) #22	PPP6R3 (ENSCLAG00000015508) #23	GAL (ENSCLAG00000016374) #24	TESMIN (ENSCLAG00000015628) #25	CPT1A (ENSCLAG00000016594) #26	MRPL21 (ENSCLAG00000016038) #27	IGHMBP2 (ENSCLAG00000015500) #28	MRGPRD (ENSCLAG00000016417) #29	MRGPRF (ENSCLAG00000016323) #30	TPCN2 (ENSCLAG00000016178) #31	CCND1 (ENSCLAG00000014981) #32	LTO1 (ENSCLAG00000014111) #33	FGF19 (ENSCLAG00000015041) #34	ENSCLAG00000014848 #35	FGF3 (ENSCLAG00000015995) #36	ANO1 (ENSCLAG00000015936) #37
Degu	MODERN SPECIES	59	ENSODEG00000017726 #8	NDUFV1 (ENSODEG00000017535) #9	ENSODEG00000017660 #10	ENSODEG00000017697 #11	TBX10 (ENSODEG00000017601) #12	ACY3 (ENSODEG00000017439) #13	ALDH3B2 (ENSODEG00000017453) #14	ENSODEG00000017464	UNC93B1 (ENSODEG00000017652) #15	ALDH3B1 (ENSODEG00000017474) #16	ENSODEG00000017577 #17	TCIRG1 (ENSODEG00000017607) #18	CHKA (ENSODEG00000017808) #19	ENSODEG00000017460 #20	C11orf24 (ENSODEG00000017396) #21	LRP5 (ENSODEG00000017493) #22	ENSODEG00000020451	PPP6R3 (ENSODEG00000017311) #23	GAL (ENSODEG00000017519) #24	TESMIN (ENSODEG00000017728) #25	CPT1A (ENSODEG00000017481) #26	MRPL21 (ENSODEG00000017369) #27	IGHMBP2 (ENSODEG00000017354) #28	MRGPRD (ENSODEG00000017313) #29	MRGPRF (ENSODEG00000017539) #30	ENSODEG00000017628	ENSODEG00000017365	TPCN2 (ENSODEG00000017370) #31	CCND1 (ENSODEG00000017314) #32	LTO1 (ENSODEG00000017276) #33	FGF19 (ENSODEG00000017850) #34
Naked mole-rat female	MODERN SPECIES	14	GSTP1 (ENSHGLG00000018697) #8	NDUFV1 (ENSHGLG00000042428) #9	ENSHGLG00000048694	ENSHGLG00000018636 #10	NUDT8 (ENSHGLG00000047808)	TBX10 (ENSHGLG00000015945) #12	ACY3 (ENSHGLG00000015831) #13	ALDH3B2 (ENSHGLG00000010052) #14	UNC93B1 (ENSHGLG00000011769) #15	ALDH3B1 (ENSHGLG00000015602) #16	NDUFS8 (ENSHGLG00000009570) #17	TCIRG1 (ENSHGLG00000018395) #18	CHKA (ENSHGLG00000014648) #19	KMT5B (ENSHGLG00000014467) #20	C11orf24 (ENSHGLG00000018642) #21	LRP5 (ENSHGLG00000012372) #22	ENSHGLG00000010435 #23	GAL (ENSHGLG00000013095) #24	TESMIN (ENSHGLG00000006844) #25	CPT1A (ENSHGLG00000009799) #26	ENSHGLG00000041256	MRPL21 (ENSHGLG00000007657) #27	IGHMBP2 (ENSHGLG00000006468) #28	MRGPRD (ENSHGLG00000033970) #29	MRGPRF (ENSHGLG00000042564) #30	TPCN2 (ENSHGLG00000009786) #31	SMIM38 (ENSHGLG00000042963)	CCND1 (ENSHGLG00000039478) #32	ORAOV1 (ENSHGLG00000041285) #33	FGF19 (ENSHGLG00000049791) #34	FGF4 (ENSHGLG00000008219) #35
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000160334	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Arctic ground squirrel	MODERN SPECIES	172	CDK2AP2 (ENSUPAG00010007891)	CABP2 (ENSUPAG00010007845) #7	GSTP1 (ENSUPAG00010007817) #8	NDUFV1 (ENSUPAG00010007803) #9	ENSUPAG00010007785 #10	ENSUPAG00010007775 #11	ENSUPAG00010007771	ACY3 (ENSUPAG00010007756) #13	UNC93B1 (ENSUPAG00010007746) #15	ALDH3B1 (ENSUPAG00010007728) #16	NDUFS8 (ENSUPAG00010007713) #17	TCIRG1 (ENSUPAG00010007691) #18	CHKA (ENSUPAG00010007654) #19	KMT5B (ENSUPAG00010007478) #20	ENSUPAG00010007475 #21	LRP5 (ENSUPAG00010007453) #22	PPP6R3 (ENSUPAG00010007337) #23	ENSUPAG00010007325 #24	CPT1A (ENSUPAG00010007209) #26	MRPL21 (ENSUPAG00010007189) #27	IGHMBP2 (ENSUPAG00010007174) #28	MRGPRD (ENSUPAG00010007168) #29	MRGPRF (ENSUPAG00010007158) #30	TPCN2 (ENSUPAG00010007118) #31	SMIM38 (ENSUPAG00010007115)	CCND1 (ENSUPAG00010007111) #32	LTO1 (ENSUPAG00010007106) #33
Squirrel	MODERN SPECIES	199	CABP2 (ENSSTOG00000014876) #7	GSTP1 (ENSSTOG00000025905) #8	NDUFV1 (ENSSTOG00000005850) #9	ENSSTOG00000021128 #10	ENSSTOG00000024208 #11	TBX10 (ENSSTOG00000011629) #12	ACY3 (ENSSTOG00000015148) #13	UNC93B1 (ENSSTOG00000011497) #15	ALDH3B1 (ENSSTOG00000015155) #16	NDUFS8 (ENSSTOG00000011500) #17	TCIRG1 (ENSSTOG00000024529) #18	CHKA (ENSSTOG00000011503) #19	ENSSTOG00000019647	KMT5B (ENSSTOG00000024331) #20	ENSSTOG00000012277 #21	LRP5 (ENSSTOG00000012285) #22	PPP6R3 (ENSSTOG00000005109) #23	GAL (ENSSTOG00000019759) #24	TESMIN (ENSSTOG00000012841) #25	CPT1A (ENSSTOG00000012856) #26	MRPL21 (ENSSTOG00000032759) #27	IGHMBP2 (ENSSTOG00000003792) #28	MRGPRF (ENSSTOG00000010947) #30	TPCN2 (ENSSTOG00000012097) #31	CCND1 (ENSSTOG00000000408) #32	LTO1 (ENSSTOG00000028728) #33	FGF19 (ENSSTOG00000021758) #34	ENSSTOG00000019792 #35	FGF3 (ENSSTOG00000023034) #36	ANO1 (ENSSTOG00000026271) #37	FADD (ENSSTOG00000033252)
Alpin marmot	MODERN SPECIES	86	PITPNM1 (ENSMMMG00000000005)	CABP2 (ENSMMMG00000000025) #7	GSTP1 (ENSMMMG00000000041) #8	NDUFV1 (ENSMMMG00000000065) #9	ENSMMMG00000000088 #10	NUDT8 (ENSMMMG00000000113)	ENSMMMG00000000133	ACY3 (ENSMMMG00000000156) #13	ALDH3B2 (ENSMMMG00000000185) #14	UNC93B1 (ENSMMMG00000000216) #15	ALDH3B1 (ENSMMMG00000000301) #16	NDUFS8 (ENSMMMG00000000351) #17	ENSMMMG00000000378 #18	CHKA (ENSMMMG00000000678) #19	KMT5B (ENSMMMG00000000789) #20	LRP5 (ENSMMMG00000001048) #22	PPP6R3 (ENSMMMG00000001095) #23	GAL (ENSMMMG00000001246) #24	TESMIN (ENSMMMG00000001259) #25	CPT1A (ENSMMMG00000001336) #26	MRPL21 (ENSMMMG00000001368) #27	IGHMBP2 (ENSMMMG00000001381) #28	MRGPRD (ENSMMMG00000001512) #29	MRGPRF (ENSMMMG00000001519) #30	TPCN2 (ENSMMMG00000001627) #31	ENSMMMG00000003260 #32	ENSMMMG00000003262 #32	LTO1 (ENSMMMG00000003272) #33	FGF19 (ENSMMMG00000003282) #34	FGF4 (ENSMMMG00000003298) #35	FGF3 (ENSMMMG00000003325) #36
Eurasian red squirrel	MODERN SPECIES	2	NDUFV1 (ENSSVLG00005025325) #9	ENSSVLG00005025305 #10	ENSSVLG00005025291 #11	TBX10 (ENSSVLG00005025280) #12	ACY3 (ENSSVLG00005025257) #13	ALDH3B2 (ENSSVLG00005025242) #14	UNC93B1 (ENSSVLG00005025215) #15	ALDH3B1 (ENSSVLG00005025147) #16	NDUFS8 (ENSSVLG00005025114) #17	ENSSVLG00005025100 #18	ENSSVLG00005025068 #18	CHKA (ENSSVLG00005025020) #19	ENSSVLG00005024959	ENSSVLG00005024928 #20	ENSSVLG00005024875 #21	LRP5 (ENSSVLG00005024864) #22	ENSSVLG00005024045 #23	GAL (ENSSVLG00005023853) #24	TESMIN (ENSSVLG00005023772) #25	CPT1A (ENSSVLG00005023707) #26	MRPL21 (ENSSVLG00005023646) #27	ENSSVLG00005023637	ENSSVLG00005023620 #28	MRGPRD (ENSSVLG00005023594) #29	MRGPRF (ENSSVLG00005023569) #30	TPCN2 (ENSSVLG00005023184) #31	ENSSVLG00005023121	CCND1 (ENSSVLG00005023090) #32	LTO1 (ENSSVLG00005023000) #33	FGF19 (ENSSVLG00005022961) #34	FGF4 (ENSSVLG00005022938) #35
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163889	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000164125	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000164125	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641.b #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00390000010641.a #9	ENSGT00390000010641.b #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Chinese hamster chok1gshd	MODERN SPECIES	401	Gstp1 (ENSCGRG00001020577) #8	Ndufv1 (ENSCGRG00001015739) #9	Doc2g (ENSCGRG00001018346) #10	Nudt8 (ENSCGRG00001011961) #11	Tbx10 (ENSCGRG00001004850)	Acy3 (ENSCGRG00001022288) #13	Aldh3b2 (ENSCGRG00001013897) #14	Aldh3b3 (ENSCGRG00001006169) #14	Unc93b1 (ENSCGRG00001017240) #15	Aldh3b1 (ENSCGRG00001001915) #16	Ndufs8 (ENSCGRG00001023988) #17	Tcirg1 (ENSCGRG00001015923) #18	Chka (ENSCGRG00001013471) #19	Kmt5b (ENSCGRG00001019834) #20	1810055G02Rik (ENSCGRG00001015629) #21	Lrp5 (ENSCGRG00001011999) #22	Ppp6r3 (ENSCGRG00001009544) #23	Gal (ENSCGRG00001007993) #24	Tesmin (ENSCGRG00001021557) #25	Cpt1a (ENSCGRG00001018477) #26	Mrpl21 (ENSCGRG00001024565) #27	Ighmbp2 (ENSCGRG00001019126) #28	Mrgprd (ENSCGRG00001015216) #29	Mrgprf (ENSCGRG00001021238) #30	Tpcn2 (ENSCGRG00001010845) #31	ENSCGRG00001001688	Ccnd1 (ENSCGRG00001022268) #32	LTO1 (ENSCGRG00001016809) #33	Fgf15 (ENSCGRG00001006635) #34	Fgf4 (ENSCGRG00001018014) #35	Fgf3 (ENSCGRG00001022007) #36
Golden Hamster	MODERN SPECIES	617	Gstp3 (ENSMAUG00000016934)	Gstp1 (ENSMAUG00000017855) #8	ENSMAUG00000017366 #9	Doc2g (ENSMAUG00000017758) #10	Nudt8 (ENSMAUG00000017149) #11	Tbx10 (ENSMAUG00000019219)	Acy3 (ENSMAUG00000017411) #13	Aldh3b2 (ENSMAUG00000017545) #14	Unc93b1 (ENSMAUG00000018290) #15	Aldh3b1 (ENSMAUG00000017809) #16	Ndufs8 (ENSMAUG00000017880) #17	Chka (ENSMAUG00000017295) #19	Kmt5b (ENSMAUG00000018918) #20	ENSMAUG00000018025	1810055G02Rik (ENSMAUG00000017064) #21	Lrp5 (ENSMAUG00000018003) #22	Ppp6r3 (ENSMAUG00000019291) #23	Gal (ENSMAUG00000017428) #24	Tesmin (ENSMAUG00000017925) #25	Cpt1a (ENSMAUG00000018165) #26	Mrpl21 (ENSMAUG00000018243) #27	Ighmbp2 (ENSMAUG00000019893) #28	Mrgprf (ENSMAUG00000017389) #30	Tpcn2 (ENSMAUG00000018105) #31	ENSMAUG00000020083	ENSMAUG00000001942	Ccnd1 (ENSMAUG00000017636) #32	LTO1 (ENSMAUG00000018685) #33	Fgf15 (ENSMAUG00000018536) #34	ENSMAUG00000018543 #35	Fgf3 (ENSMAUG00000017622) #36
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641.b #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Prairie vole	MODERN SPECIES	16	ENSMOCG00000020246 #8	Ndufv1 (ENSMOCG00000018645) #9	Doc2g (ENSMOCG00000007770) #10	Nudt8 (ENSMOCG00000002104) #11	Tbx10 (ENSMOCG00000018876)	Acy3 (ENSMOCG00000016646) #13	Aldh3b2 (ENSMOCG00000022624) #14	Aldh3b3 (ENSMOCG00000021302) #14	Unc93b1 (ENSMOCG00000008961) #15	Aldh3b1 (ENSMOCG00000020373) #16	ENSMOCG00000019842	Tcirg1 (ENSMOCG00000005946) #18	Chka (ENSMOCG00000007076) #19	Kmt5b (ENSMOCG00000015596) #20	1810055G02Rik (ENSMOCG00000021230) #21	Lrp5 (ENSMOCG00000011074) #22	Ppp6r3 (ENSMOCG00000020408) #23	Gal (ENSMOCG00000005202) #24	Tesmin (ENSMOCG00000003633) #25	Cpt1a (ENSMOCG00000014661) #26	Mrpl21 (ENSMOCG00000002555) #27	Ighmbp2 (ENSMOCG00000018939) #28	Mrgprf (ENSMOCG00000005355) #30	Tpcn2 (ENSMOCG00000013268) #31	ENSMOCG00000021239	Ccnd1 (ENSMOCG00000013593) #32	LTO1 (ENSMOCG00000011612) #33	Fgf15 (ENSMOCG00000020351) #34	ENSMOCG00000003096 #35	Fgf3 (ENSMOCG00000022933) #36	Ano1 (ENSMOCG00000014655) #37
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000005365	Ndufv1 (ENSPEMG00000011587) #9	Doc2g (ENSPEMG00000005234) #10	Nudt8 (ENSPEMG00000018440) #11	Tbx10 (ENSPEMG00000017754)	ENSPEMG00000014977 #13	Aldh3b2 (ENSPEMG00000026919) #14	Aldh3b3 (ENSPEMG00000024395) #14	Unc93b1 (ENSPEMG00000015773) #15	Aldh3b1 (ENSPEMG00000026438) #16	Ndufs8 (ENSPEMG00000014723) #17	Tcirg1 (ENSPEMG00000007012) #18	Chka (ENSPEMG00000010890) #19	Kmt5b (ENSPEMG00000013458) #20	1810055G02Rik (ENSPEMG00000016140) #21	Lrp5 (ENSPEMG00000011601) #22	Ppp6r3 (ENSPEMG00000018116) #23	Gal (ENSPEMG00000013588) #24	Tesmin (ENSPEMG00000019187) #25	Cpt1a (ENSPEMG00000003628) #26	Mrpl21 (ENSPEMG00000015425) #27	Ighmbp2 (ENSPEMG00000017775) #28	Mrgprd (ENSPEMG00000004118) #29	Mrgprf (ENSPEMG00000025731) #30	Tpcn2 (ENSPEMG00000018425) #31	Smim38 (ENSPEMG00000019158)	Ccnd1 (ENSPEMG00000018939) #32	LTO1 (ENSPEMG00000008663) #33	ENSPEMG00000027742	Fgf15 (ENSPEMG00000008128) #34	Fgf4 (ENSPEMG00000018637) #35
Murinae	ANCESTRAL SPECIES		ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Mus	ANCESTRAL SPECIES		ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.e #27	ENSGT00930000151035.a #28
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00940000155904.e.b.f #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.e #27	ENSGT00930000151035.a #28
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000164125	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b.e #14	ENSGT00920000150159	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.e #27	ENSGT00930000151035.a #28
Steppe mouse	MODERN SPECIES	2566										Aldh3b1 (ENSMSIG00000012641) #16	Ndufs8 (ENSMSIG00000012673) #17	Tcirg1 (ENSMSIG00000012689) #18	Chka (ENSMSIG00000012948) #19	Kmt5b (ENSMSIG00000013087) #20	1810055G02Rik (ENSMSIG00000013200) #21	Lrp5 (ENSMSIG00000013219) #22	Ppp6r3 (ENSMSIG00000013276) #23	Tesmin (ENSMSIG00000014016) #25	ENSMSIG00000014054 #24	Cpt1a (ENSMSIG00000014070) #26	ENSMSIG00000014116	Mrpl21 (ENSMSIG00000014121) #27	Ighmbp2 (ENSMSIG00000014147) #28
spretus	MODERN SPECIES	10	Gstp3 (MGP_SPRETEiJ_G0023400)	Ndufv1 (MGP_SPRETEiJ_G0023399) #9	Doc2g (MGP_SPRETEiJ_G0023398) #10	Nudt8 (MGP_SPRETEiJ_G0023397) #11	Tbx10 (MGP_SPRETEiJ_G0023396)	Acy3 (MGP_SPRETEiJ_G0023395) #13	MGP_SPRETEiJ_G0023394	Unc93b1 (MGP_SPRETEiJ_G0023393) #15	Aldh3b1 (MGP_SPRETEiJ_G0023392) #16	Ndufs8 (MGP_SPRETEiJ_G0023391) #17	Tcirg1 (MGP_SPRETEiJ_G0023390) #18	MGP_SPRETEiJ_G0023389 #14	Chka (MGP_SPRETEiJ_G0023388) #19	Kmt5b (MGP_SPRETEiJ_G0023387) #20	1810055G02Rik (MGP_SPRETEiJ_G0023386) #21	Lrp5 (MGP_SPRETEiJ_G0023385) #22	Ppp6r3 (MGP_SPRETEiJ_G0023384) #23	MGP_SPRETEiJ_G0023383 #24	Tesmin (MGP_SPRETEiJ_G0023382) #25	Cpt1a (MGP_SPRETEiJ_G0023381) #26	Ighmbp2 (MGP_SPRETEiJ_G0014700) #28
Mouse	MODERN SPECIES	10	Gstp1 (ENSMUSG00000060803) #8	Ndufv1 (ENSMUSG00000037916) #9	Doc2g (ENSMUSG00000024871) #10	Nudt8 (ENSMUSG00000110949) #11	Tbx10 (ENSMUSG00000037477)	Acy3 (ENSMUSG00000024866) #13	Aldh3b2 (ENSMUSG00000075296) #14	Aldh3b3 (ENSMUSG00000037263) #14	Unc93b1 (ENSMUSG00000036908) #15	Aldh3b1 (ENSMUSG00000024885) #16	Ndufs8 (ENSMUSG00000059734) #17	Tcirg1 (ENSMUSG00000001750) #18	Chka (ENSMUSG00000024843) #19	Kmt5b (ENSMUSG00000045098) #20	1810055G02Rik (ENSMUSG00000035372) #21	Lrp5 (ENSMUSG00000024913) #22	Ppp6r3 (ENSMUSG00000024908) #23	Gal (ENSMUSG00000024907) #24	Tesmin (ENSMUSG00000024905) #25	Cpt1a (ENSMUSG00000024900) #26	Mrpl21 (ENSMUSG00000024829) #27	Ighmbp2 (ENSMUSG00000024831) #28
Ryukyu mouse	MODERN SPECIES	10	MGP_CAROLIEiJ_G0022484 #8	Ndufv1 (MGP_CAROLIEiJ_G0022483) #9	Doc2g (MGP_CAROLIEiJ_G0022482) #10	Nudt8 (MGP_CAROLIEiJ_G0022481) #11	Tbx10 (MGP_CAROLIEiJ_G0022480)	Acy3 (MGP_CAROLIEiJ_G0022479) #13	Aldh3b2 (MGP_CAROLIEiJ_G0022478) #14	MGP_CAROLIEiJ_G0022477	Unc93b1 (MGP_CAROLIEiJ_G0022476) #15	Aldh3b1 (MGP_CAROLIEiJ_G0022475) #16	Ndufs8 (MGP_CAROLIEiJ_G0022474) #17	Tcirg1 (MGP_CAROLIEiJ_G0022473) #18	Chka (MGP_CAROLIEiJ_G0022472) #19	Kmt5b (MGP_CAROLIEiJ_G0022471) #20	1810055G02Rik (MGP_CAROLIEiJ_G0022470) #21	Lrp5 (MGP_CAROLIEiJ_G0022469) #22	Ppp6r3 (MGP_CAROLIEiJ_G0022468) #23	MGP_CAROLIEiJ_G0022467 #24	Tesmin (MGP_CAROLIEiJ_G0022466) #25	Cpt1a (MGP_CAROLIEiJ_G0022465) #26	Mrpl21 (MGP_CAROLIEiJ_G0022464) #27	Ighmbp2 (MGP_CAROLIEiJ_G0022463) #28
Shrew mouse	MODERN SPECIES		MGP_PahariEiJ_G0013981 #8	Ndufv1 (MGP_PahariEiJ_G0013980) #9	Doc2g (MGP_PahariEiJ_G0013979) #10	Nudt8 (MGP_PahariEiJ_G0013978) #11	Tbx10 (MGP_PahariEiJ_G0013977)	Acy3 (MGP_PahariEiJ_G0013976) #13	Aldh3b2 (MGP_PahariEiJ_G0013975) #14	MGP_PahariEiJ_G0013974	Unc93b1 (MGP_PahariEiJ_G0013973) #15	Aldh3b1 (MGP_PahariEiJ_G0013972) #16	Ndufs8 (MGP_PahariEiJ_G0013971) #17	Tcirg1 (MGP_PahariEiJ_G0013970) #18	Chka (MGP_PahariEiJ_G0013969) #19	Kmt5b (MGP_PahariEiJ_G0013968) #20	1810055G02Rik (MGP_PahariEiJ_G0013967) #21	Lrp5 (MGP_PahariEiJ_G0013966) #22	Ppp6r3 (MGP_PahariEiJ_G0013965) #23	MGP_PahariEiJ_G0013964 #24	Tesmin (MGP_PahariEiJ_G0013963) #25	Cpt1a (MGP_PahariEiJ_G0013962) #26	MGP_PahariEiJ_G0013961 #27	Ighmbp2 (MGP_PahariEiJ_G0013960) #28	Mrgprd (MGP_PahariEiJ_G0013959) #29	Mrgprf (MGP_PahariEiJ_G0013958) #30	Tpcn2 (MGP_PahariEiJ_G0013957) #31	Ccnd1 (MGP_PahariEiJ_G0013956) #32	MGP_PahariEiJ_G0013955 #33	Fgf15 (MGP_PahariEiJ_G0013954) #34	Fgf4 (MGP_PahariEiJ_G0013953) #35	Fgf3 (MGP_PahariEiJ_G0013952) #36	Ano1 (MGP_PahariEiJ_G0013951) #37
Rat	MODERN SPECIES		Nudt8 (ENSRNOG00000017955) #11	Acy3 (ENSRNOG00000017901) #13	Tbx10 (ENSRNOG00000017944)	Aldh3b2 (ENSRNOG00000068138) #14	ENSRNOG00000069460 #16	ENSRNOG00000066970 #14	LOC120099971 (ENSRNOG00000017872) #14	Unc93b1 (ENSRNOG00000017703) #15	Aldh3b1 (ENSRNOG00000017512) #16	Ndufs8 (ENSRNOG00000017446) #17	Tcirg1 (ENSRNOG00000017220) #18	Chka (ENSRNOG00000016791) #19	Kmt5b (ENSRNOG00000016790) #20	AABR07006081.1 (ENSRNOG00000016597)	RGD1311946 (ENSRNOG00000025245) #21	Lrp5 (ENSRNOG00000015911) #22	Ppp6r3 (ENSRNOG00000015540) #23	Gal (ENSRNOG00000015156) #24	Tesmin (ENSRNOG00000014671) #25	Cpt1a (ENSRNOG00000014254) #26	Mrpl21 (ENSRNOG00000013845) #27	Ighmbp2 (ENSRNOG00000013456) #28	Mrgprd (ENSRNOG00000013448) #29	Mrgprf (ENSRNOG00000013426) #30	Tpcn2 (ENSRNOG00000013387) #31	Ccnd1 (ENSRNOG00000020918) #32	Lto1 (ENSRNOG00000020903) #33	Fgf19 (ENSRNOG00000020899) #34	Fgf4 (ENSRNOG00000020890) #35	Fgf3 (ENSRNOG00000020888) #36	Ano1 (ENSRNOG00000020865) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1324								Nudt8 (ENSNGAG00000002777) #11	ENSNGAG00000007366	Unc93b1 (ENSNGAG00000010893) #15	Aldh3b1 (ENSNGAG00000012520) #16	Ndufs8 (ENSNGAG00000013139) #17	Tcirg1 (ENSNGAG00000014303) #18	Chka (ENSNGAG00000017194) #19	Kmt5b (ENSNGAG00000018362) #20	Lrp5 (ENSNGAG00000013122) #22	ENSNGAG00000012705	ENSNGAG00000016433 #21	Ppp6r3 (ENSNGAG00000020310) #23	Gal (ENSNGAG00000021287) #24	Tesmin (ENSNGAG00000022272) #25	Cpt1a (ENSNGAG00000023574) #26	Mrpl21 (ENSNGAG00000023813) #27	Ighmbp2 (ENSNGAG00000006566) #28	Mrgprf (ENSNGAG00000021640) #30
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000023512 #8	Ndufv1 (ENSJJAG00000017874) #9	Doc2g (ENSJJAG00000021341) #10	Nudt8 (ENSJJAG00000023328) #11	Tbx10 (ENSJJAG00000022634)	Acy3 (ENSJJAG00000019193) #13	ENSJJAG00000023409 #14	Unc93b1 (ENSJJAG00000023583) #15	Aldh3b1 (ENSJJAG00000020011) #16	Ndufs8 (ENSJJAG00000005023) #17	Tcirg1 (ENSJJAG00000017427) #18	Chka (ENSJJAG00000012227) #19	ENSJJAG00000017165 #20	1810055G02Rik (ENSJJAG00000023128) #21	ENSJJAG00000012387	Lrp5 (ENSJJAG00000015575) #22	Ppp6r3 (ENSJJAG00000012747) #23	Gal (ENSJJAG00000015277) #24	Tesmin (ENSJJAG00000019166) #25	Cpt1a (ENSJJAG00000019639) #26	Mrpl21 (ENSJJAG00000018455) #27	Ighmbp2 (ENSJJAG00000022964) #28	Mrgprf (ENSJJAG00000017168) #30	Tpcn2 (ENSJJAG00000019473) #31	ENSJJAG00000000500	Mro (ENSJJAG00000018866)	ENSJJAG00000007096	Ska1 (ENSJJAG00000008382)	Cxxc1 (ENSJJAG00000022206)	Mbd1 (ENSJJAG00000022859)	ENSJJAG00000023145
Kangaroo rat	MODERN SPECIES	373	Cabp2 (ENSDORG00000014527) #7	Gstp3 (ENSDORG00000024771)	ENSDORG00000002063 #8	Ndufv1 (ENSDORG00000010074) #9	Doc2g (ENSDORG00000026896) #10	ENSDORG00000010072	Tbx10 (ENSDORG00000010070)	Acy3 (ENSDORG00000027105) #13	ENSDORG00000027104 #14	Unc93b1 (ENSDORG00000003564) #15	Aldh3b1 (ENSDORG00000003566) #16	ENSDORG00000003567	Tcirg1 (ENSDORG00000012469) #18	Chka (ENSDORG00000012471) #19	ENSDORG00000015449 #20	Lrp5 (ENSDORG00000003026) #22	Ppp6r3 (ENSDORG00000015410) #23	ENSDORG00000013895 #25	Cpt1a (ENSDORG00000011817) #26	Mrpl21 (ENSDORG00000025967) #27	Ighmbp2 (ENSDORG00000026350) #28	Mrgprd (ENSDORG00000023697) #29	Mrgprf (ENSDORG00000009826) #30	Tpcn2 (ENSDORG00000002980) #31	ENSDORG00000029122 #32	LTO1 (ENSDORG00000012520) #33	ENSDORG00000024888 #35	Ano1 (ENSDORG00000009084) #37	Ppfia1 (ENSDORG00000016082)	Cttn (ENSDORG00000009315)	Shank2 (ENSDORG00000011912)
Lagomorpha	ANCESTRAL SPECIES	263									ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23
Pika	MODERN SPECIES	2661																LRP5 (ENSOPRG00000000764) #22
Rabbit	MODERN SPECIES	652												ENSOCUG00000037783 #15	ENSOCUG00000039281 #16	KMT5B (ENSOCUG00000002778) #20	ENSOCUG00000027517	ENSOCUG00000013645 #22	PPP6R3 (ENSOCUG00000006068) #23
Tree shrew	MODERN SPECIES	3770															ENSTBEG00000006799 #21	LRP5 (ENSTBEG00000007403) #22
Primates	ANCESTRAL SPECIES		ENSGT00940000164125	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000164125	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000164125	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Greater bamboo lemur	MODERN SPECIES	496															ENSPSMG00000002727	LRP5 (ENSPSMG00000002716) #22	PPP6R3 (ENSPSMG00000001136) #23	GAL (ENSPSMG00000000240) #24	TESMIN (ENSPSMG00000000229) #25	CPT1A (ENSPSMG00000000163) #26	MRPL21 (ENSPSMG00000000024) #27	ENSPSMG00000025141
Coquerels sifaka	MODERN SPECIES	124	ENSPCOG00000013544	GSTP1 (ENSPCOG00000025031) #8	NDUFV1 (ENSPCOG00000016494) #9	ENSPCOG00000025071 #10	ENSPCOG00000017507 #11	ENSPCOG00000026012	ACY3 (ENSPCOG00000016521) #13	ALDH3B2 (ENSPCOG00000020768) #14	UNC93B1 (ENSPCOG00000023404) #15	ALDH3B1 (ENSPCOG00000028800) #16	NDUFS8 (ENSPCOG00000000121) #17	TCIRG1 (ENSPCOG00000027699) #18	CHKA (ENSPCOG00000027662) #19	KMT5B (ENSPCOG00000028166) #20	C11orf24 (ENSPCOG00000018326) #21	LRP5 (ENSPCOG00000026929) #22	PPP6R3 (ENSPCOG00000028586) #23	GAL (ENSPCOG00000019500) #24	TESMIN (ENSPCOG00000022912) #25	CPT1A (ENSPCOG00000000084) #26	MRPL21 (ENSPCOG00000015404) #27	IGHMBP2 (ENSPCOG00000018759) #28	MRGPRF (ENSPCOG00000010107) #30	TPCN2 (ENSPCOG00000017980) #31	CCND1 (ENSPCOG00000027474) #32	LTO1 (ENSPCOG00000027650) #33	FGF19 (ENSPCOG00000020362) #34	FGF4 (ENSPCOG00000028304) #35	FGF3 (ENSPCOG00000025992) #36	ANO1 (ENSPCOG00000026720) #37	FADD (ENSPCOG00000022951)
Mouse lemur	MODERN SPECIES	27	CABP2 (ENSMICG00000006052) #7	GSTP1 (ENSMICG00000035404) #8	NDUFV1 (ENSMICG00000038015) #9	ENSMICG00000034887 #10	ENSMICG00000031375 #11	ENSMICG00000038049	ACY3 (ENSMICG00000010175) #13	ALDH3B2 (ENSMICG00000002573) #14	UNC93B1 (ENSMICG00000009511) #15	ALDH3B1 (ENSMICG00000009516) #16	ENSMICG00000009523 #17	TCIRG1 (ENSMICG00000009530) #18	CHKA (ENSMICG00000009554) #19	KMT5B (ENSMICG00000028472) #20	C11orf24 (ENSMICG00000035582) #21	LRP5 (ENSMICG00000014388) #22	PPP6R3 (ENSMICG00000003096) #23	GAL (ENSMICG00000046807) #24	TESMIN (ENSMICG00000001063) #25	CPT1A (ENSMICG00000001068) #26	MRPL21 (ENSMICG00000046580) #27	IGHMBP2 (ENSMICG00000043944) #28	MRGPRF (ENSMICG00000017866) #30	TPCN2 (ENSMICG00000017867) #31	CCND1 (ENSMICG00000033113) #32	LTO1 (ENSMICG00000003061) #33	FGF19 (ENSMICG00000047906) #34	FGF4 (ENSMICG00000046252) #35	FGF3 (ENSMICG00000045024) #36	ANO1 (ENSMICG00000017568) #37	FADD (ENSMICG00000047386)
Bushbaby	MODERN SPECIES	249	CABP2 (ENSOGAG00000032757) #7	ENSOGAG00000001869	NDUFV1 (ENSOGAG00000000781) #9	ENSOGAG00000025265 #10	ENSOGAG00000000783 #11	ENSOGAG00000000784	ACY3 (ENSOGAG00000000785) #13	ALDH3B2 (ENSOGAG00000000786) #14	UNC93B1 (ENSOGAG00000000787) #15	ALDH3B1 (ENSOGAG00000000789) #16	NDUFS8 (ENSOGAG00000013220) #17	TCIRG1 (ENSOGAG00000028104) #18	CHKA (ENSOGAG00000000790) #19	KMT5B (ENSOGAG00000025516) #20	C11orf24 (ENSOGAG00000032648) #21	LRP5 (ENSOGAG00000007721) #22	PPP6R3 (ENSOGAG00000007734) #23	GAL (ENSOGAG00000007742) #24	TESMIN (ENSOGAG00000007743) #25	CPT1A (ENSOGAG00000007747) #26	IGHMBP2 (ENSOGAG00000011671) #28	MRGPRF (ENSOGAG00000011677) #30	TPCN2 (ENSOGAG00000014554) #31	ENSOGAG00000024468	CCND1 (ENSOGAG00000011495) #32	LTO1 (ENSOGAG00000011848) #33	FGF19 (ENSOGAG00000028091) #34	FGF4 (ENSOGAG00000011500) #35	FGF3 (ENSOGAG00000029967) #36	ANO1 (ENSOGAG00000016331) #37	FADD (ENSOGAG00000016337)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Tarsier	MODERN SPECIES	5023															CUNH11orf24 (ENSTSYG00000032039) #21	LRP5 (ENSTSYG00000031238) #22	ENSTSYG00000037486	PPP6R3 (ENSTSYG00000004234) #23
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Cebidae	ANCESTRAL SPECIES		ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Bolivian squirrel monkey	MODERN SPECIES	184	ENSSBOG00000030579 #9	ENSSBOG00000028474 #11	TBX10 (ENSSBOG00000027660) #12	ACY3 (ENSSBOG00000026048) #13	ALDH3B2 (ENSSBOG00000022925) #14	ENSSBOG00000019661	UNC93B1 (ENSSBOG00000027617) #15	ALDH3B1 (ENSSBOG00000021610) #16	NDUFS8 (ENSSBOG00000020737) #17	TCIRG1 (ENSSBOG00000029778) #18	CHKA (ENSSBOG00000029779) #19	ENSSBOG00000014251	KMT5B (ENSSBOG00000018620) #20	ENSSBOG00000017297	C11orf24 (ENSSBOG00000021901) #21	LRP5 (ENSSBOG00000011522) #22	PPP6R3 (ENSSBOG00000024673) #23	GAL (ENSSBOG00000018976) #24	ENSSBOG00000033953 #25	CPT1A (ENSSBOG00000027234) #26	MRPL21 (ENSSBOG00000021429) #27	IGHMBP2 (ENSSBOG00000021342) #28	MRGPRF (ENSSBOG00000022916) #30	TPCN2 (ENSSBOG00000036110) #31	ENSSBOG00000023740	CCND1 (ENSSBOG00000031704) #32	LTO1 (ENSSBOG00000030139) #33	FGF19 (ENSSBOG00000032296) #34	FGF4 (ENSSBOG00000020328) #35	FGF3 (ENSSBOG00000028072) #36	ANO1 (ENSSBOG00000025783) #37
Capuchin	MODERN SPECIES	102	CABP2 (ENSCCAG00000018244) #7	ENSCCAG00000037776	NDUFV1 (ENSCCAG00000027983) #9	ENSCCAG00000024841 #11	ENSCCAG00000034598 #10	TBX10 (ENSCCAG00000035836) #12	ACY3 (ENSCCAG00000030848) #13	ALDH3B2 (ENSCCAG00000025402) #14	UNC93B1 (ENSCCAG00000034142) #15	ALDH3B1 (ENSCCAG00000020585) #16	ENSCCAG00000036231 #17	ENSCCAG00000030447 #18	CHKA (ENSCCAG00000036109) #19	KMT5B (ENSCCAG00000022496) #20	C11orf24 (ENSCCAG00000029246) #21	LRP5 (ENSCCAG00000035778) #22	PPP6R3 (ENSCCAG00000026978) #23	GAL (ENSCCAG00000028808) #24	TESMIN (ENSCCAG00000028427) #25
Marmoset	MODERN SPECIES	2	ENSCJAG00000000879	ENSCJAG00000031574	NDUFV1 (ENSCJAG00000000839) #9	ENSCJAG00000041608 #11	TBX10 (ENSCJAG00000071274) #12	ACY3 (ENSCJAG00000070289) #13	ALDH3B2 (ENSCJAG00000077097) #14	UNC93B1 (ENSCJAG00000045026) #15	ALDH3B1 (ENSCJAG00000015676) #16	ENSCJAG00000015686 #17	TCIRG1 (ENSCJAG00000015705) #18	CHKA (ENSCJAG00000015722) #19	ENSCJAG00000022979	KMT5B (ENSCJAG00000015727) #20	C11orf24 (ENSCJAG00000043469) #21	LRP5 (ENSCJAG00000015736) #22	PPP6R3 (ENSCJAG00000015752) #23	ENSCJAG00000079396	GAL (ENSCJAG00000015858) #24	TESMIN (ENSCJAG00000015860) #25	CPT1A (ENSCJAG00000015871) #26	MRPL21 (ENSCJAG00000015881) #27	IGHMBP2 (ENSCJAG00000015887) #28	ENSCJAG00000076956	MRGPRF (ENSCJAG00000079141) #30	TPCN2 (ENSCJAG00000015902) #31	ENSCJAG00000080728	ENSCJAG00000087214	ENSCJAG00000056159	ENSCJAG00000079289	ENSCJAG00000079611
Mas night monkey	MODERN SPECIES	411	NDUFV1 (ENSANAG00000029177) #9	ENSANAG00000026619 #10	ENSANAG00000026791 #11	TBX10 (ENSANAG00000029548) #12	ACY3 (ENSANAG00000024838) #13	ALDH3B2 (ENSANAG00000022991) #14	UNC93B1 (ENSANAG00000026380) #15	ALDH3B1 (ENSANAG00000022742) #16	NDUFS8 (ENSANAG00000033484) #17	TCIRG1 (ENSANAG00000032110) #18	CHKA (ENSANAG00000025868) #19	KMT5B (ENSANAG00000029415) #20	ENSANAG00000017977	C11orf24 (ENSANAG00000035026) #21	ENSANAG00000021978	LRP5 (ENSANAG00000027436) #22	PPP6R3 (ENSANAG00000020950) #23	GAL (ENSANAG00000038246) #24	TESMIN (ENSANAG00000011110) #25	CPT1A (ENSANAG00000017356) #26	MRPL21 (ENSANAG00000020754) #27	IGHMBP2 (ENSANAG00000027309) #28	MRGPRF (ENSANAG00000026421) #30	TPCN2 (ENSANAG00000022288) #31	ENSANAG00000022087	CCND1 (ENSANAG00000027376) #32	LTO1 (ENSANAG00000020841) #33	FGF19 (ENSANAG00000028313) #34	FGF4 (ENSANAG00000028917) #35	FGF3 (ENSANAG00000033426) #36	ANO1 (ENSANAG00000037157) #37
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33	ENSGT00940000160601 #34
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33	ENSGT00940000160601 #34
Orangutan	MODERN SPECIES	2	PITPNM1 (ENSPPYG00000002988)	CDK2AP2 (ENSPPYG00000002987)	CABP2 (ENSPPYG00000002986) #7	GSTP1 (ENSPPYG00000002985) #8	NDUFV1 (ENSPPYG00000002983) #9	NUDT8 (ENSPPYG00000029677)	TBX10 (ENSPPYG00000002981) #12	ACY3 (ENSPPYG00000002980) #13	ALDH3B2 (ENSPPYG00000038703) #14	UNC93B1 (ENSPPYG00000020003) #15	ALDH3B1 (ENSPPYG00000002977) #16	NDUFS8 (ENSPPYG00000002976) #17	CHKA (ENSPPYG00000002974) #19	KMT5B (ENSPPYG00000002973) #20	C11orf24 (ENSPPYG00000002972) #21	LRP5 (ENSPPYG00000036218) #22	PPP6R3 (ENSPPYG00000002970) #23	GAL (ENSPPYG00000002969) #24	TESMIN (ENSPPYG00000002968) #25	CPT1A (ENSPPYG00000002967) #26	ENSPPYG00000002966 #27	IGHMBP2 (ENSPPYG00000002965) #28	MRGPRD (ENSPPYG00000002964) #29	MRGPRF (ENSPPYG00000037582) #30	TPCN2 (ENSPPYG00000002962) #31	SMIM38 (ENSPPYG00000032272)	MYEOV (ENSPPYG00000033224)	ENSPPYG00000018627	ENSPPYG00000039142	CCND1 (ENSPPYG00000002961) #32	LTO1 (ENSPPYG00000030489) #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33	ENSGT00940000160601 #34
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	2	GSTP1 (ENSGGOG00000013849) #8	NDUFV1 (ENSGGOG00000011943) #9	ENSGGOG00000023590 #10	NUDT8 (ENSGGOG00000011953)	TBX10 (ENSGGOG00000011961) #12	ACY3 (ENSGGOG00000011979) #13	ALDH3B2 (ENSGGOG00000015729) #14	ENSGGOG00000038633	ENSGGOG00000003630	ENSGGOG00000025959 #15	ALDH3B1 (ENSGGOG00000004995) #16	NDUFS8 (ENSGGOG00000005001) #17	TCIRG1 (ENSGGOG00000005005) #18	KMT5B (ENSGGOG00000004122) #20	C11orf24 (ENSGGOG00000027226) #21	LRP5 (ENSGGOG00000000038) #22	PPP6R3 (ENSGGOG00000006609) #23	GAL (ENSGGOG00000000252) #24	TESMIN (ENSGGOG00000001666) #25	ENSGGOG00000001670 #26	MRPL21 (ENSGGOG00000012124) #27	IGHMBP2 (ENSGGOG00000012131) #28	MRGPRD (ENSGGOG00000027003) #29	MRGPRF (ENSGGOG00000005578) #30	TPCN2 (ENSGGOG00000010594) #31	SMIM38 (ENSGGOG00000038283)	MYEOV (ENSGGOG00000014636)	ENSGGOG00000003377	ENSGGOG00000037803 #32	ENSGGOG00000002858 #33	ENSGGOG00000039153
Gorilla	MODERN SPECIES	13	TTC28 (ENSGGOG00000034936)	PITPNB (ENSGGOG00000005061)	MN1 (ENSGGOG00000004428)	ENSGGOG00000040415	ENSGGOG00000012894	CRYBA4 (ENSGGOG00000026014)	CRYBB1 (ENSGGOG00000013639)	TPST2 (ENSGGOG00000005006)	TFIP11 (ENSGGOG00000004999)	SRRD (ENSGGOG00000004994)	HPS4 (ENSGGOG00000004984)	ASPHD2 (ENSGGOG00000004979)	SEZ6L (ENSGGOG00000004972)	MYO18B (ENSGGOG00000000353)	GRK3 (ENSGGOG00000004757)	ENSGGOG00000006219 #22	ENSGGOG00000042208	ENSGGOG00000006228	CRYBB3 (ENSGGOG00000039263)	KIAA1671 (ENSGGOG00000011414)	LHFPL7 (ENSGGOG00000028354)	SGSM1 (ENSGGOG00000013936)	PIWIL3 (ENSGGOG00000015492)	ENSGGOG00000037309	ENSGGOG00000038778	ENSGGOG00000041649	ENSGGOG00000000999	LRRC75B (ENSGGOG00000008038)	SNRPD3 (ENSGGOG00000015640)	ENSGGOG00000039330	ENSGGOG00000015635
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33	ENSGT00940000160601 #34
Human	MODERN SPECIES	2	CDK2AP2 (ENSG00000167797)	CABP2 (ENSG00000167791) #7	GSTP1 (ENSG00000084207) #8	NDUFV1 (ENSG00000167792) #9	NUDT8 (ENSG00000167799)	TBX10 (ENSG00000167800) #12	ACY3 (ENSG00000132744) #13	ALDH3B2 (ENSG00000132746) #14	UNC93B1 (ENSG00000110057) #15	ALDH3B1 (ENSG00000006534) #16	NDUFS8 (ENSG00000110717) #17	TCIRG1 (ENSG00000110719) #18	CHKA (ENSG00000110721) #19	KMT5B (ENSG00000110066) #20	C11orf24 (ENSG00000171067) #21	LRP5 (ENSG00000162337) #22	PPP6R3 (ENSG00000110075) #23	GAL (ENSG00000069482) #24	TESMIN (ENSG00000132749) #25	CPT1A (ENSG00000110090) #26	MRPL21 (ENSG00000197345) #27	IGHMBP2 (ENSG00000132740) #28	MRGPRD (ENSG00000172938) #29	MRGPRF (ENSG00000172935) #30	TPCN2 (ENSG00000162341) #31	SMIM38 (ENSG00000284713)	MYEOV (ENSG00000172927)	CCND1 (ENSG00000110092) #32	LTO1 (ENSG00000149716) #33	FGF19 (ENSG00000162344) #34	FGF4 (ENSG00000075388) #35
Pan	ANCESTRAL SPECIES	1	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00390000005254.j	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00910000148520	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00950000182857.a.a.b.a.r.a.a.a.a.a.a	ENSGT00910000148731	ENSGT00940000157816 #32	ENSGT00910000147590
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	2	NDUFV1 (ENSPTRG00000003969) #9	DOC2G (ENSPTRG00000052755) #10	NUDT8 (ENSPTRG00000003971)	TBX10 (ENSPTRG00000003972) #12	ACY3 (ENSPTRG00000003973) #13	ALDH3B2 (ENSPTRG00000003974) #14	ENSPTRG00000044434	UNC93B1 (ENSPTRG00000003975) #15	ALDH3B1 (ENSPTRG00000051435) #16	NDUFS8 (ENSPTRG00000003978) #17	TCIRG1 (ENSPTRG00000003979) #18	CHKA (ENSPTRG00000003980) #19	ENSPTRG00000051044	KMT5B (ENSPTRG00000003981) #20	C11H11orf24 (ENSPTRG00000003982) #21	LRP5 (ENSPTRG00000003983) #22	PPP6R3 (ENSPTRG00000003984) #23	GAL (ENSPTRG00000003985) #24	TESMIN (ENSPTRG00000003986) #25	CPT1A (ENSPTRG00000003987) #26	MRPL21 (ENSPTRG00000003988) #27	IGHMBP2 (ENSPTRG00000003989) #28	MRGPRD (ENSPTRG00000003990) #29	MRGPRF (ENSPTRG00000003991) #30	TPCN2 (ENSPTRG00000003992) #31	SMIM38 (ENSPTRG00000049784)	MYEOV (ENSPTRG00000003994)	ENSPTRG00000044016	ENSPTRG00000046997	ENSPTRG00000051585	CCND1 (ENSPTRG00000052519) #32
Chimpanzee	MODERN SPECIES	13	ENSPTRG00000051248	CRYBA4 (ENSPTRG00000024105)	CRYBB1 (ENSPTRG00000014199)	ENSPTRG00000050599	TPST2 (ENSPTRG00000014197)	TFIP11 (ENSPTRG00000014196)	SRRD (ENSPTRG00000014195)	HPS4 (ENSPTRG00000014194)	ASPHD2 (ENSPTRG00000014193)	SEZ6L (ENSPTRG00000014192)	MYO18B (ENSPTRG00000046234)	ENSPTRG00000044224	GRK3 (ENSPTRG00000014187)	CRYBB2 (ENSPTRG00000014185)	ENSPTRG00000052579	LRP5L (ENSPTRG00000014186) #22	ENSPTRG00000048785	ENSPTRG00000050238	CRYBB3 (ENSPTRG00000014184)	KIAA1671 (ENSPTRG00000014183)	LHFPL7 (ENSPTRG00000029472)	SGSM1 (ENSPTRG00000014181)	PIWIL3 (ENSPTRG00000014180)	ENSPTRG00000044840	LRRC75B (ENSPTRG00000014178)	ENSPTRG00000040730	SNRPD3 (ENSPTRG00000014176)	ENSPTRG00000043284	GUCD1 (ENSPTRG00000014175)	UPB1 (ENSPTRG00000014174)	ADORA2A (ENSPTRG00000014173)
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	2	GSTP1 (ENSPPAG00000043169) #8	NDUFV1 (ENSPPAG00000043544) #9	NUDT8 (ENSPPAG00000043158)	TBX10 (ENSPPAG00000030171) #12	ACY3 (ENSPPAG00000031478) #13	ALDH3B2 (ENSPPAG00000032213) #14	ENSPPAG00000027946	UNC93B1 (ENSPPAG00000031688) #15	ALDH3B1 (ENSPPAG00000030155) #16	NDUFS8 (ENSPPAG00000039231) #17	TCIRG1 (ENSPPAG00000030122) #18	CHKA (ENSPPAG00000037771) #19	ENSPPAG00000036484	KMT5B (ENSPPAG00000038672) #20	C11orf24 (ENSPPAG00000030344) #21	LRP5 (ENSPPAG00000027899) #22	PPP6R3 (ENSPPAG00000040283) #23	GAL (ENSPPAG00000030688) #24	TESMIN (ENSPPAG00000042130) #25	CPT1A (ENSPPAG00000026146) #26	ENSPPAG00000035588	MRPL21 (ENSPPAG00000038393) #27	IGHMBP2 (ENSPPAG00000027355) #28	MRGPRD (ENSPPAG00000018331) #29	MRGPRF (ENSPPAG00000028148) #30	TPCN2 (ENSPPAG00000031099) #31	MYEOV (ENSPPAG00000027386)	ENSPPAG00000033657	ENSPPAG00000014303	ENSPPAG00000036375 #32	ENSPPAG00000035520 #33
Bonobo	MODERN SPECIES	13	ENSPPAG00000030571	ENSPPAG00000033017	CRYBA4 (ENSPPAG00000028348)	CRYBB1 (ENSPPAG00000028143)	ENSPPAG00000021871	TPST2 (ENSPPAG00000041524)	TFIP11 (ENSPPAG00000037529)	SRRD (ENSPPAG00000036964)	HPS4 (ENSPPAG00000011496)	ASPHD2 (ENSPPAG00000043426)	SEZ6L (ENSPPAG00000036759)	MYO18B (ENSPPAG00000030665)	ENSPPAG00000035689	GRK3 (ENSPPAG00000028956)	ENSPPAG00000012446	ENSPPAG00000039812 #22	ENSPPAG00000035108	ENSPPAG00000033834	CRYBB3 (ENSPPAG00000035463)	KIAA1671 (ENSPPAG00000042972)	LHFPL7 (ENSPPAG00000039763)	SGSM1 (ENSPPAG00000025023)	PIWIL3 (ENSPPAG00000031985)	GGT5 (ENSPPAG00000003938)	SUSD2 (ENSPPAG00000033704)	CABIN1 (ENSPPAG00000039279)	ENSPPAG00000020373	ENSPPAG00000015152	ENSPPAG00000011364	ENSPPAG00000010448	ENSPPAG00000035285
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	19	CDK2AP2 (ENSNLEG00000006438)	ENSNLEG00000006441 #7	ENSNLEG00000006448	NDUFV1 (ENSNLEG00000006458) #9	ENSNLEG00000028816 #10	ENSNLEG00000006493 #12	ACY3 (ENSNLEG00000006494) #13	ALDH3B2 (ENSNLEG00000006499) #14	UNC93B1 (ENSNLEG00000006504) #15	ALDH3B1 (ENSNLEG00000006517) #16	NDUFS8 (ENSNLEG00000006525) #17	TCIRG1 (ENSNLEG00000006527) #18	CHKA (ENSNLEG00000006538) #19	KMT5B (ENSNLEG00000033680) #20	C11orf24 (ENSNLEG00000006549) #21	LRP5 (ENSNLEG00000006550) #22	PPP6R3 (ENSNLEG00000006556) #23	GAL (ENSNLEG00000006599) #24	TESMIN (ENSNLEG00000006601) #25	CPT1A (ENSNLEG00000026864) #26	MRPL21 (ENSNLEG00000006605) #27	ENSNLEG00000027457	IGHMBP2 (ENSNLEG00000006609) #28	ENSNLEG00000006613 #29	TPCN2 (ENSNLEG00000006614) #31	ENSNLEG00000027800	CCND1 (ENSNLEG00000029930) #32	ENSNLEG00000010437 #33	FGF19 (ENSNLEG00000010441) #34	ENSNLEG00000033620	ENSNLEG00000010450 #36
Gibbon	MODERN SPECIES	22	ENSNLEG00000027257	CRYBA4 (ENSNLEG00000007741)	CRYBB1 (ENSNLEG00000034612)	TPST2 (ENSNLEG00000007737)	TFIP11 (ENSNLEG00000007735)	SRRD (ENSNLEG00000007734)	HPS4 (ENSNLEG00000007733)	ENSNLEG00000027675	ASPHD2 (ENSNLEG00000007732)	ENSNLEG00000007728	MYO18B (ENSNLEG00000007723)	GRK3 (ENSNLEG00000007720)	ENSNLEG00000027170	ENSNLEG00000027432	ENSNLEG00000027308	ENSNLEG00000029623 #22	ENSNLEG00000036080	CRYBB2 (ENSNLEG00000007717)	CRYBB3 (ENSNLEG00000007715)	ENSNLEG00000036022	ENSNLEG00000007711	LHFPL7 (ENSNLEG00000007710)	SGSM1 (ENSNLEG00000007700)	PIWIL3 (ENSNLEG00000007677)	ENSNLEG00000034373	IGLV9-49 (ENSNLEG00000034782)	ENSNLEG00000031427	ENSNLEG00000031871	VPREB1 (ENSNLEG00000015413)	ENSNLEG00000031962	ENSNLEG00000031146
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00910000147590	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Golden snub-nosed monkey	MODERN SPECIES	1279	CABP2 (ENSRROG00000037183) #7	GSTP1 (ENSRROG00000027191) #8	NDUFV1 (ENSRROG00000037664) #9	ENSRROG00000026586 #10	NUDT8 (ENSRROG00000037097)	TBX10 (ENSRROG00000039702) #12	ACY3 (ENSRROG00000039646) #13	ALDH3B2 (ENSRROG00000030687) #14	UNC93B1 (ENSRROG00000012536) #15	ALDH3B1 (ENSRROG00000035472) #16	NDUFS8 (ENSRROG00000035645) #17	TCIRG1 (ENSRROG00000035211) #18	CHKA (ENSRROG00000016904) #19	KMT5B (ENSRROG00000045691) #20	C11orf24 (ENSRROG00000027402) #21	LRP5 (ENSRROG00000036339) #22	ENSRROG00000031480 #23
Black snub-nosed monkey	MODERN SPECIES	100		FGF9 (ENSRBIG00000038855)	MICU2 (ENSRBIG00000024714)	ZDHHC20 (ENSRBIG00000043965)	ENSRBIG00000002487	ENSRBIG00000039121	ENSRBIG00000038327	MPHOSPH8 (ENSRBIG00000020664)	PSPC1 (ENSRBIG00000036057)	ENSRBIG00000029211	ZMYM5 (ENSRBIG00000037855)	ENSRBIG00000034122	ZMYM2 (ENSRBIG00000035593)	GJA3 (ENSRBIG00000044002)	GJB2 (ENSRBIG00000022663)	ENSRBIG00000044426 #22	PPP6R3 (ENSRBIG00000044728) #23	GAL (ENSRBIG00000043331) #24	TESMIN (ENSRBIG00000041391) #25	CPT1A (ENSRBIG00000007771) #26	MRPL21 (ENSRBIG00000044044) #27	IGHMBP2 (ENSRBIG00000044249) #28	MRGPRF (ENSRBIG00000030308) #30	TPCN2 (ENSRBIG00000037035) #31	SMIM38 (ENSRBIG00000027460)	ENSRBIG00000029980	MYEOV (ENSRBIG00000038697)	CCND1 (ENSRBIG00000036860) #32	LTO1 (ENSRBIG00000042427) #33	ENSRBIG00000036535	FGF19 (ENSRBIG00000032547) #34
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00910000147590
Vervet Monkey	MODERN SPECIES		CABP2 (ENSCSAG00000008676) #7	GSTP1 (ENSCSAG00000008684) #8	NDUFV1 (ENSCSAG00000008693) #9	ENSCSAG00000008700 #10	ENSCSAG00000008710 #11	TBX10 (ENSCSAG00000008726) #12	ACY3 (ENSCSAG00000008735) #13	ALDH3B2 (ENSCSAG00000008743) #14	UNC93B1 (ENSCSAG00000008748) #15	ENSCSAG00000008797 ##14	NDUFS8 (ENSCSAG00000008821) #17	TCIRG1 (ENSCSAG00000008911) #18	CHKA (ENSCSAG00000008953) #19	KMT5B (ENSCSAG00000008964) #20	ENSCSAG00000008972 #21	LRP5 (ENSCSAG00000008983) #22	PPP6R3 (ENSCSAG00000009005) #23	GAL (ENSCSAG00000009024) #24	TESMIN (ENSCSAG00000009039) #25	CPT1A (ENSCSAG00000009054) #26	MRPL21 (ENSCSAG00000009065) #27	IGHMBP2 (ENSCSAG00000009185) #28	MRGPRD (ENSCSAG00000009230) #29	MRGPRF (ENSCSAG00000009245) #30	TPCN2 (ENSCSAG00000009261) #31	CCND1 (ENSCSAG00000009273) #32	LTO1 (ENSCSAG00000009279) #33	ENSCSAG00000018961	FGF19 (ENSCSAG00000009286) #34	FGF4 (ENSCSAG00000009298) #35	FGF3 (ENSCSAG00000009310) #36
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00910000147590
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00960000186788
Olive baboon	MODERN SPECIES	3	GSTP1 (ENSPANG00000004067) #8	NDUFV1 (ENSPANG00000011236) #9	ENSPANG00000008595 #10	NUDT8 (ENSPANG00000009837)	TBX10 (ENSPANG00000006501) #12	ACY3 (ENSPANG00000024740) #13	ENSPANG00000046704 #14	ENSPANG00000049723	UNC93B1 (ENSPANG00000025891) #15	ALDH3B1 (ENSPANG00000010862) #16	TCIRG1 (ENSPANG00000012975) #18	CHKA (ENSPANG00000015385) #19	ENSPANG00000047861 #20	ENSPANG00000003110 #20	C11orf24 (ENSPANG00000023334) #21	LRP5 (ENSPANG00000023602) #22	PPP6R3 (ENSPANG00000025892) #23	ENSPANG00000043414 #24	TESMIN (ENSPANG00000013061) #25	CPT1A (ENSPANG00000020294) #26	MRPL21 (ENSPANG00000018811) #27	IGHMBP2 (ENSPANG00000023650) #28	MRGPRD (ENSPANG00000039940) #29	MRGPRF (ENSPANG00000025893) #30	TPCN2 (ENSPANG00000007008) #31	SMIM38 (ENSPANG00000032349)	CCND1 (ENSPANG00000043007) #32	ENSPANG00000008596 #33	FGF19 (ENSPANG00000042087) #34	FGF4 (ENSPANG00000019451) #35	FGF3 (ENSPANG00000023335) #36
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00960000186788	ENSGT00940000158825 #35
Sooty mangabey	MODERN SPECIES	518	CABP2 (ENSCATG00000029380) #7	GSTP1 (ENSCATG00000032849) #8	NDUFV1 (ENSCATG00000028405) #9	ENSCATG00000030569 #10	NUDT8 (ENSCATG00000029910)	TBX10 (ENSCATG00000029511) #12	ACY3 (ENSCATG00000030863) #13	ALDH3B2 (ENSCATG00000015105) #14	UNC93B1 (ENSCATG00000037367) #15	ALDH3B1 (ENSCATG00000030949) #16	NDUFS8 (ENSCATG00000042587) #17	TCIRG1 (ENSCATG00000031312) #18	CHKA (ENSCATG00000041180) #19	KMT5B (ENSCATG00000042964) #20	ENSCATG00000042618 #21	LRP5 (ENSCATG00000039241) #22	PPP6R3 (ENSCATG00000036683) #23	GAL (ENSCATG00000042505) #24	TESMIN (ENSCATG00000042664) #25	CPT1A (ENSCATG00000015860) #26	MRPL21 (ENSCATG00000041171) #27	IGHMBP2 (ENSCATG00000031229) #28	MRGPRD (ENSCATG00000022559) #29	MRGPRF (ENSCATG00000033118) #30	TPCN2 (ENSCATG00000041149) #31	MYEOV (ENSCATG00000034953)	CCND1 (ENSCATG00000040258) #32	LTO1 (ENSCATG00000039172) #33	FGF19 (ENSCATG00000038630) #34	ENSCATG00000032815	FGF4 (ENSCATG00000034644) #35
Drill	MODERN SPECIES	942	CDK2AP2 (ENSMLEG00000040207)	CABP2 (ENSMLEG00000010923) #7	GSTP1 (ENSMLEG00000007972) #8	NDUFV1 (ENSMLEG00000041364) #9	NUDT8 (ENSMLEG00000008171)	ENSMLEG00000030742	ACY3 (ENSMLEG00000031989) #13	ALDH3B2 (ENSMLEG00000028402) #14	UNC93B1 (ENSMLEG00000037140) #15	ALDH3B1 (ENSMLEG00000025945) #16	NDUFS8 (ENSMLEG00000031739) #17	TCIRG1 (ENSMLEG00000010508) #18	CHKA (ENSMLEG00000043175) #19	KMT5B (ENSMLEG00000035508) #20	ENSMLEG00000038166 #21	LRP5 (ENSMLEG00000011072) #22	PPP6R3 (ENSMLEG00000039058) #23	GAL (ENSMLEG00000028956) #24	TESMIN (ENSMLEG00000036701) #25	CPT1A (ENSMLEG00000035301) #26	MRPL21 (ENSMLEG00000044097) #27	IGHMBP2 (ENSMLEG00000043529) #28	MRGPRF (ENSMLEG00000029222) #30	TPCN2 (ENSMLEG00000042447) #31	MYEOV (ENSMLEG00000043368)	ENSMLEG00000040718 #32	LTO1 (ENSMLEG00000035959) #33	ENSMLEG00000042285 #34	ENSMLEG00000023931	FGF3 (ENSMLEG00000035348) #36	ANO1 (ENSMLEG00000028568) #37
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00400000022774	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426 #33
Pig-tailed macaque	MODERN SPECIES	433	GSTP1 (ENSMNEG00000044300) #8	NDUFV1 (ENSMNEG00000041086) #9	ENSMNEG00000033340 #10	NUDT8 (ENSMNEG00000041484)	TBX10 (ENSMNEG00000032749) #12	ACY3 (ENSMNEG00000041493) #13	ALDH3B2 (ENSMNEG00000042334) #14	UNC93B1 (ENSMNEG00000042693) #15	ENSMNEG00000044884 ##14	NDUFS8 (ENSMNEG00000029160) #17	TCIRG1 (ENSMNEG00000044486) #18	CHKA (ENSMNEG00000041615) #19	KMT5B (ENSMNEG00000028922) #20	ENSMNEG00000035330	ENSMNEG00000035688 #21	LRP5 (ENSMNEG00000044124) #22	PPP6R3 (ENSMNEG00000045264) #23	GAL (ENSMNEG00000041422) #24	TESMIN (ENSMNEG00000045298) #25	CPT1A (ENSMNEG00000037562) #26	MRPL21 (ENSMNEG00000036906) #27	ENSMNEG00000040189	IGHMBP2 (ENSMNEG00000043511) #28	MRGPRF (ENSMNEG00000028189) #30	TPCN2 (ENSMNEG00000043437) #31	MYEOV (ENSMNEG00000040855)	CCND1 (ENSMNEG00000040753) #32	LTO1 (ENSMNEG00000042591) #33	FGF19 (ENSMNEG00000035985) #34	ENSMNEG00000044891	FGF4 (ENSMNEG00000042206) #35
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT01100000263493.a.b.a.b.a.b.a.b.a.a.a	ENSGT00940000163244.d.b.a.b.b.b.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00910000147792	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000164709.a.b.b.a.b.a.a.a.a.a.a.a.a	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426 #33
Rhesus	MODERN SPECIES	5	ENSMMUG00000062171	NUDT8 (ENSMMUG00000042611)	TBX10 (ENSMMUG00000056105) #12	ACY3 (ENSMMUG00000039824) #13	ALDH3B2 (ENSMMUG00000018533) #14	UNC93B1 (ENSMMUG00000023184) #15	ALDH3B1 (ENSMMUG00000023188) ##14	NDUFS8 (ENSMMUG00000023189) #17	TCIRG1 (ENSMMUG00000023190) #18	CHKA (ENSMMUG00000023192) #19	KMT5B (ENSMMUG00000014237) #20	ENSMMUG00000042838	C14H11orf24 (ENSMMUG00000019253) #21	ENSMMUG00000049489	ENSMMUG00000058610	LRP5 (ENSMMUG00000031237) #22	PPP6R3 (ENSMMUG00000016213) #23	GAL (ENSMMUG00000064140) #24	TESMIN (ENSMMUG00000001777) #25	CPT1A (ENSMMUG00000001780) #26	ENSMMUG00000062742	MRPL21 (ENSMMUG00000010124) #27	IGHMBP2 (ENSMMUG00000010128) #28	ENSMMUG00000051144	MRGPRD (ENSMMUG00000010129) #29	MRGPRF (ENSMMUG00000047446) #30	TPCN2 (ENSMMUG00000010784) #31	CCND1 (ENSMMUG00000002368) #32	ENSMMUG00000057523	ENSMMUG00000049990	LTO1 (ENSMMUG00000002369) #33
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000061940	NDUFV1 (ENSMFAG00000038730) #9	TBX10 (ENSMFAG00000007056) #12	ACY3 (ENSMFAG00000046339) #13	ALDH3B2 (ENSMFAG00000044295) #14	UNC93B1 (ENSMFAG00000043671) #15	ENSMFAG00000001507 ##14	NDUFS8 (ENSMFAG00000035405) #17	TCIRG1 (ENSMFAG00000030577) #18	CHKA (ENSMFAG00000032927) #19	KMT5B (ENSMFAG00000030851) #20	ENSMFAG00000008768	C11orf24 (ENSMFAG00000036404) #21	ENSMFAG00000059616	ENSMFAG00000064267	ENSMFAG00000036113 #22	PPP6R3 (ENSMFAG00000036974) #23	ENSMFAG00000001933 #24	TESMIN (ENSMFAG00000032724) #25	ENSMFAG00000054259	CPT1A (ENSMFAG00000031988) #26	ENSMFAG00000050046	ENSMFAG00000065150	MRPL21 (ENSMFAG00000043823) #27	IGHMBP2 (ENSMFAG00000043909) #28	ENSMFAG00000062875	ENSMFAG00000052017	MRGPRD (ENSMFAG00000065051) #29	MRGPRF (ENSMFAG00000031267) #30	TPCN2 (ENSMFAG00000045821) #31	ENSMFAG00000056625
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000163435.e.a	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000163435.e.a	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Suina	ANCESTRAL SPECIES	14	ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.e.a	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Pig	MODERN SPECIES	10	CABP2 (ENSSSCG00000020764) #7	ENSSSCG00000060071	ENSSSCG00000032003	NDUFV1 (ENSSSCG00000012896) #9	ENSSSCG00000052603 #10	ENSSSCG00000035645 #11	TBX10 (ENSSSCG00000034410) #12	ALDH3B2 (ENSSSCG00000026349) #14	UNC93B1 (ENSSSCG00000012893) #15	ENSSSCG00000028501 ##14	NDUFS8 (ENSSSCG00000037455) #17	TCIRG1 (ENSSSCG00000012890) #18	CHKA (ENSSSCG00000012889) #19	KMT5B (ENSSSCG00000031459) #20	ENSSSCG00000012886 #21	LRP5 (ENSSSCG00000012885) #22	PPP6R3 (ENSSSCG00000012884) #23	GAL (ENSSSCG00000012883) #24	TESMIN (ENSSSCG00000012882) #25	CPT1A (ENSSSCG00000012880) #26	ENSSSCG00000012879 #27	IGHMBP2 (ENSSSCG00000012878) #28	ENSSSCG00000042011 #29	MRGPRF (ENSSSCG00000034441) #30	TPCN2 (ENSSSCG00000012875) #31	CCND1 (ENSSSCG00000037900) #32	LTO1 (ENSSSCG00000012874) #33	FGF19 (ENSSSCG00000012871) #34	FGF4 (ENSSSCG00000012870) #35	FGF3 (ENSSSCG00000061049) #36	ANO1 (ENSSSCG00000024158) #37
Chacoan peccary	MODERN SPECIES	921	CABP2 (ENSCWAG00000007074) #7	ENSCWAG00000007049	ENSCWAG00000007036	NDUFV1 (ENSCWAG00000006939) #9	ENSCWAG00000006879 #10	ENSCWAG00000006858 #11	TBX10 (ENSCWAG00000006811) #12	ALDH3B2 (ENSCWAG00000006631) #14	UNC93B1 (ENSCWAG00000006584) #15	ENSCWAG00000006537 ##14	NDUFS8 (ENSCWAG00000006464) #17	TCIRG1 (ENSCWAG00000006382) #18	CHKA (ENSCWAG00000006285) #19	KMT5B (ENSCWAG00000006216) #20	ENSCWAG00000006195 #21	LRP5 (ENSCWAG00000006098) #22	PPP6R3 (ENSCWAG00000005865) #23	GAL (ENSCWAG00000005790) #24	TESMIN (ENSCWAG00000005668) #25	CPT1A (ENSCWAG00000005608) #26	MRPL21 (ENSCWAG00000005572) #27	IGHMBP2 (ENSCWAG00000005480) #28	MRGPRF (ENSCWAG00000005456) #30	TPCN2 (ENSCWAG00000005384) #31	CCND1 (ENSCWAG00000005332) #32	LTO1 (ENSCWAG00000005292) #33	FGF19 (ENSCWAG00000005256) #34	FGF4 (ENSCWAG00000005233) #35	FGF3 (ENSCWAG00000005211) #36	ANO1 (ENSCWAG00000005024) #37	FADD (ENSCWAG00000004977)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000163435.e.a	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000164125	ENSGT00940000163435.e.a	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000163889	ENSGT00940000163374.g	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Arabian camel	MODERN SPECIES	1	ENSCDRG00005010431	GSTP1-1 (ENSCDRG00005010333)	NDUFV1 (ENSCDRG00005010077) #9	ENSCDRG00005010025 #10	NUDT8 (ENSCDRG00005009988)	ENSCDRG00005009949	ALDH3B2 (ENSCDRG00005009823) #14	ENSCDRG00005009764	UNC93B1 (ENSCDRG00005009668) #15	ALDH3B1 (ENSCDRG00005009325) #16	NDUFS8 (ENSCDRG00005009196) #17	TCIRG1 (ENSCDRG00005009035) #18	CHKA (ENSCDRG00005008677) #19	KMT5B (ENSCDRG00005008575) #20	ENSCDRG00005008524 #21	ENSCDRG00005008491 #22	PPP6R3 (ENSCDRG00005007732) #23	GAL (ENSCDRG00005007648) #24	TESMIN (ENSCDRG00005007444) #25	CPT1A (ENSCDRG00005007333) #26	MRPL21 (ENSCDRG00005007269) #27	IGHMBP2 (ENSCDRG00005007128) #28	MRGPRF (ENSCDRG00005007035) #30	TPCN2 (ENSCDRG00005006714) #31	CCND1 (ENSCDRG00005006610) #32	LTO1 (ENSCDRG00005021470) #33	FGF19 (ENSCDRG00005021465) #34	FGF4 (ENSCDRG00005021463) #35	ENSCDRG00005021451 #36	ANO1 (ENSCDRG00005021443) #37	FADD (ENSCDRG00005021431)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Yarkand deer	MODERN SPECIES	11	ENSCHYG00000003387	ENSCHYG00000003427	NDUFV1 (ENSCHYG00000003440) #9	ENSCHYG00000003458 #10	ENSCHYG00000003477 #11	TBX10 (ENSCHYG00000003486) #12	ALDH3B2 (ENSCHYG00000003514) #14	ENSCHYG00000003548	UNC93B1 (ENSCHYG00000003557) #15	ALDH3B1 (ENSCHYG00000003612) #16	NDUFS8 (ENSCHYG00000003690) #17	TCIRG1 (ENSCHYG00000003734) #18	CHKA (ENSCHYG00000003799) #19	KMT5B (ENSCHYG00000003849) #20	ENSCHYG00000003880	LRP5 (ENSCHYG00000003897) #22	PPP6R3 (ENSCHYG00000003967) #23	GAL (ENSCHYG00000004104) #24	TESMIN (ENSCHYG00000004115) #25	CPT1A (ENSCHYG00000004136) #26	ENSCHYG00000004181 #27	IGHMBP2 (ENSCHYG00000004233) #28	ENSCHYG00000004308 #29	ENSCHYG00000004314 #29	MRGPRF (ENSCHYG00000000036) #30	TPCN2 (ENSCHYG00000000093) #31	CCND1 (ENSCHYG00000000255) #32	LTO1 (ENSCHYG00000000282) #33	FGF19 (ENSCHYG00000000308) #34	FGF4 (ENSCHYG00000000320) #35	FGF3 (ENSCHYG00000000327) #36
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Siberian musk deer	MODERN SPECIES	1226	ENSMMSG00000023744	ENSMMSG00000023730	NDUFV1 (ENSMMSG00000023713) #9	ENSMMSG00000023708 #10	ENSMMSG00000023706	ENSMMSG00000023700 #11	TBX10 (ENSMMSG00000023697) #12	ALDH3B2 (ENSMMSG00000023685) #14	UNC93B1 (ENSMMSG00000023668) #15	ENSMMSG00000023640 ##14	NDUFS8 (ENSMMSG00000023617) #17	TCIRG1 (ENSMMSG00000023600) #18	CHKA (ENSMMSG00000023562) #19	KMT5B (ENSMMSG00000023533) #20	ENSMMSG00000023522 #21	LRP5 (ENSMMSG00000023500) #22	PPP6R3 (ENSMMSG00000023347) #23	GAL (ENSMMSG00000023307) #24	TESMIN (ENSMMSG00000023272) #25	CPT1A (ENSMMSG00000023241) #26	MRPL21 (ENSMMSG00000023225) #27	IGHMBP2 (ENSMMSG00000023204) #28	ENSMMSG00000023188 #29	MRGPRF (ENSMMSG00000023179) #30	TPCN2 (ENSMMSG00000023131) #31	CCND1 (ENSMMSG00000023111) #32	LTO1 (ENSMMSG00000023097) #33	FGF19 (ENSMMSG00000023088) #34	FGF4 (ENSMMSG00000023082) #35	FGF3 (ENSMMSG00000023074) #36
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Caprinae	ANCESTRAL SPECIES	20	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000163374.g	ENSGT00940000163889	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020013487	NDUFV1 (ENSOARG00020013585) #9	ENSOARG00020013607 #10	NUDT8 (ENSOARG00020013703)	TBX10 (ENSOARG00020013801) #12	ALDH3B2 (ENSOARG00020013912) #14	ENSOARG00020014001	UNC93B1 (ENSOARG00020014035) #15	ENSOARG00020014110 ##14	NDUFS8 (ENSOARG00020014383) #17	ENSOARG00020014473 #18	ENSOARG00020014508 #18	CHKA (ENSOARG00020014607) #19	KMT5B (ENSOARG00020014904) #20	ENSOARG00020015122 #21	LRP5 (ENSOARG00020015176) #22	PPP6R3 (ENSOARG00020015496) #23	GAL (ENSOARG00020016179) #24	TESMIN (ENSOARG00020016224) #25	CPT1A (ENSOARG00020016497) #26	ENSOARG00020016650	ENSOARG00020016715 #27	IGHMBP2 (ENSOARG00020016777) #28	ENSOARG00020016943 #29	MRGPRF (ENSOARG00020017039) #30	SMIM38 (ENSOARG00020017868)	CCND1 (ENSOARG00020018440) #32	LTO1 (ENSOARG00020018493) #33	FGF19 (ENSOARG00020018648) #34	FGF4 (ENSOARG00020018705) #35	FGF3 (ENSOARG00020018755) #36
Goat	MODERN SPECIES	21	CABP2 (ENSCHIG00000009106) #7	ENSCHIG00000015669	ENSCHIG00000014133	NDUFV1 (ENSCHIG00000022888) #9	ENSCHIG00000020228 #10	ENSCHIG00000019709 #11	ENSCHIG00000026949	ALDH3B2 (ENSCHIG00000016769) #14	UNC93B1 (ENSCHIG00000026943) #15	ENSCHIG00000026059 ##14	ENSCHIG00000013308 #17	TCIRG1 (ENSCHIG00000021975) #18	CHKA (ENSCHIG00000014786) #19	KMT5B (ENSCHIG00000025585) #20	ENSCHIG00000016165 #21	LRP5 (ENSCHIG00000019530) #22	PPP6R3 (ENSCHIG00000020367) #23	GAL (ENSCHIG00000024788) #24	TESMIN (ENSCHIG00000026439) #25	ENSCHIG00000019619	CPT1A (ENSCHIG00000015344) #26	MRPL21 (ENSCHIG00000020757) #27	IGHMBP2 (ENSCHIG00000011703) #28	ENSCHIG00000008487 #29	MRGPRF (ENSCHIG00000024512) #30	TPCN2 (ENSCHIG00000024724) #31	CCND1 (ENSCHIG00000010534) #32	LTO1 (ENSCHIG00000016576) #33	FGF19 (ENSCHIG00000012980) #34	FGF4 (ENSCHIG00000010447) #35	FGF3 (ENSCHIG00000001606) #36
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
American bison	MODERN SPECIES	3011	CDK2AP2 (ENSBBBG00000011578)	CABP2 (ENSBBBG00000002134) #7	ENSBBBG00000011647	ENSBBBG00000011688	NDUFV1 (ENSBBBG00000006837) #9	ENSBBBG00000002170 #11	TBX10 (ENSBBBG00000011733) #12	ALDH3B2 (ENSBBBG00000011745) #14	UNC93B1 (ENSBBBG00000011762) #15	ENSBBBG00000008099 ##14	NDUFS8 (ENSBBBG00000011803) #17	TCIRG1 (ENSBBBG00000011829) #18	CHKA (ENSBBBG00000002204) #19	KMT5B (ENSBBBG00000011927) #20	ENSBBBG00000008495 #21	LRP5 (ENSBBBG00000007211) #22	PPP6R3 (ENSBBBG00000002323) #23	GAL (ENSBBBG00000007883) #24	TESMIN (ENSBBBG00000012323) #25	CPT1A (ENSBBBG00000012354) #26	MRPL21 (ENSBBBG00000002340) #27	ENSBBBG00000012361	MRGPRD (ENSBBBG00000002343) #29	MRGPRF (ENSBBBG00000012368) #30	TPCN2 (ENSBBBG00000012427) #31	ENSBBBG00000002380 #32	ENSBBBG00000002382 #32	LTO1 (ENSBBBG00000012464) #33	FGF19 (ENSBBBG00000012472) #34	FGF4 (ENSBBBG00000012474) #35	ANO1 (ENSBBBG00000012506) #37
Bos	ANCESTRAL SPECIES	11	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Hybrid Bos Indicus	MODERN SPECIES	21	CABP2 (ENSBIXG00005021047) #7	ENSBIXG00005021109	ENSBIXG00005021129	NDUFV1 (ENSBIXG00005021193) #9	ENSBIXG00005007675 #10	TBX10 (ENSBIXG00005021245) #12	ENSBIXG00005021275 #14	UNC93B1 (ENSBIXG00005021297) #15	ENSBIXG00005021420 ##14	NDUFS8 (ENSBIXG00005006662) #17	TCIRG1 (ENSBIXG00005021556) #18	ENSBIXG00005006157 #19	KMT5B (ENSBIXG00005021706) #20	ENSBIXG00005021733 #21	ENSBIXG00005021753	LRP5 (ENSBIXG00005005995) #22	PPP6R3 (ENSBIXG00005003728) #23	ENSBIXG00005022087 #24	TESMIN (ENSBIXG00005022165) #25	CPT1A (ENSBIXG00005022352) #26	ENSBIXG00005022450 #27	IGHMBP2 (ENSBIXG00005022495) #28	ENSBIXG00005022523 #29	ENSBIXG00005022549 #29	MRGPRF (ENSBIXG00005022567) #30	TPCN2 (ENSBIXG00005005450) #31	CCND1 (ENSBIXG00005003878) #32	LTO1 (ENSBIXG00005022702) #33	FGF19 (ENSBIXG00005022715) #34	FGF4 (ENSBIXG00005022740) #35	FGF3 (ENSBIXG00005003897) #36
Cow	MODERN SPECIES	21	CDK2AP2 (ENSBTAG00000002121)	CABP2 (ENSBTAG00000022209) #7	GSTP1 (ENSBTAG00000003548)	GSTP1 (ENSBTAG00000051210)	NDUFV1 (ENSBTAG00000021776) #9	DOC2G (ENSBTAG00000021777) #10	TBX10 (ENSBTAG00000011816) #12	ENSBTAG00000012054 #14	UNC93B1 (ENSBTAG00000001193) #15	ALDH3B1 (ENSBTAG00000013093) ##14	NDUFS8 (ENSBTAG00000012072) #17	TCIRG1 (ENSBTAG00000000292) #18	CHKA (ENSBTAG00000010304) #19	KMT5B (ENSBTAG00000001185) #20	C29H11orf24 (ENSBTAG00000004392) #21	LRP5 (ENSBTAG00000005903) #22	ENSBTAG00000011830	PPP6R3 (ENSBTAG00000009584) #23	GAL (ENSBTAG00000009393) #24	TESMIN (ENSBTAG00000053218) #25	CPT1A (ENSBTAG00000021999) #26	MRPL21 (ENSBTAG00000004348) #27	IGHMBP2 (ENSBTAG00000022185) #28	ENSBTAG00000046090 #29	ENSBTAG00000016774 #29	MRGPRF (ENSBTAG00000015185) #30	TPCN2 (ENSBTAG00000015183) #31	LTO1 (ENSBTAG00000011898)	CCND1 (ENSBTAG00000017514) #32	FGF19 (ENSBTAG00000017285) #34	FGF4 (ENSBTAG00000012563) #35
Bos_a	ANCESTRAL SPECIES	34	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00940000155904.f ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00990000205605	ENSGT00940000160601 #34	ENSGT00940000158825 #35
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2316									ENSBMUG00000004387 ##14	NDUFS8 (ENSBMUG00000004400) #17	TCIRG1 (ENSBMUG00000004675) #18	CHKA (ENSBMUG00000005017) #19	KMT5B (ENSBMUG00000005099) #20	ENSBMUG00000005121 #21	ENSBMUG00000005125	ENSBMUG00000005142 #22	ENSBMUG00000005168 #22	PPP6R3 (ENSBMUG00000005493) #23	GAL (ENSBMUG00000005636) #24	TESMIN (ENSBMUG00000005656) #25	CPT1A (ENSBMUG00000005671) #26	MRPL21 (ENSBMUG00000005686) #27	IGHMBP2 (ENSBMUG00000005704) #28	ENSBMUG00000005724 #29	ENSBMUG00000005759 #29	MRGPRF (ENSBMUG00000005775) #30	TPCN2 (ENSBMUG00000005793) #31	ENSBMUG00000005824 #32	ENSBMUG00000005837 #32	LTO1 (ENSBMUG00000005875) #33	ENSBMUG00000005895 #35
Wild yak	MODERN SPECIES	2316								ENSBMUG00000004387 ##14	NDUFS8 (ENSBMUG00000004400) #17	TCIRG1 (ENSBMUG00000004675) #18	CHKA (ENSBMUG00000005017) #19	KMT5B (ENSBMUG00000005099) #20	ENSBMUG00000005121 #21	ENSBMUG00000005125	ENSBMUG00000005142 #22	ENSBMUG00000005168 #22	PPP6R3 (ENSBMUG00000005493) #23	GAL (ENSBMUG00000005636) #24	TESMIN (ENSBMUG00000005656) #25	CPT1A (ENSBMUG00000005671) #26	MRPL21 (ENSBMUG00000005686) #27	IGHMBP2 (ENSBMUG00000005704) #28	ENSBMUG00000005724 #29	ENSBMUG00000005759 #29	MRGPRF (ENSBMUG00000005775) #30	TPCN2 (ENSBMUG00000005793) #31	ENSBMUG00000005824 #32	ENSBMUG00000005837 #32	LTO1 (ENSBMUG00000005875) #33	ENSBMUG00000005895 #35	ANO1 (ENSBMUG00000005970) #37
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426.d #33	ENSGT00390000009426.c.a.a.a #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Blue whale	MODERN SPECIES	19	PITPNM1 (ENSBMSG00010004775)	CABP2 (ENSBMSG00010004797) #7	ENSBMSG00010004811	ENSBMSG00010004827	NDUFV1 (ENSBMSG00010004841) #9	ENSBMSG00010004866 #10	ENSBMSG00010004879 #11	TBX10 (ENSBMSG00010004883) #12	ALDH3B2 (ENSBMSG00010004892) #14	UNC93B1 (ENSBMSG00010004898) #15	ALDH3B1 (ENSBMSG00010004922) #16	NDUFS8 (ENSBMSG00010004952) #17	CHKA (ENSBMSG00010004966) #19	KMT5B (ENSBMSG00010004978) #20	ENSBMSG00010004983	LRP5 (ENSBMSG00010004990) #22	PPP6R3 (ENSBMSG00010005022) #23	GAL (ENSBMSG00010005047) #24	CPT1A (ENSBMSG00010005084) #26	ENSBMSG00010005133	MRPL21 (ENSBMSG00010005141) #27	IGHMBP2 (ENSBMSG00010005154) #28	MRGPRF (ENSBMSG00010005176) #30	TPCN2 (ENSBMSG00010005216) #31	CCND1 (ENSBMSG00010005276) #32	ENSBMSG00010005297 #33	FGF19 (ENSBMSG00010005311) #34	FGF4 (ENSBMSG00010005321) #35	FGF3 (ENSBMSG00010005331) #36	ANO1 (ENSBMSG00010005353) #37	FADD (ENSBMSG00010005386)
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426.d #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431.jb #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426.d #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431.jb #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00390000018351.n	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426.d #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431.jb #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00390000018351.n	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426.c.a.a.a #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Narwhal	MODERN SPECIES	314	CABP2 (ENSMMNG00015020136) #7	ENSMMNG00015020200	ENSMMNG00015020229	NDUFV1 (ENSMMNG00015020258) #9	ENSMMNG00015020291 #10	ENSMMNG00015020305 #11	TBX10 (ENSMMNG00015020328) #12	ALDH3B2 (ENSMMNG00015020368) #14	UNC93B1 (ENSMMNG00015020395) #15	ALDH3B1 (ENSMMNG00015020460) #16	NDUFS8 (ENSMMNG00015020550) #17	TCIRG1 (ENSMMNG00015020611) #18	CHKA (ENSMMNG00015020690) #19	KMT5B (ENSMMNG00015020754) #20	ENSMMNG00015020790 #21	LRP5 (ENSMMNG00015020832) #22	PPP6R3 (ENSMMNG00015020961) #23	GAL (ENSMMNG00015021087) #24	TESMIN (ENSMMNG00015021117) #25	GATC (ENSMMNG00015021129)	CPT1A (ENSMMNG00015021158) #26	MRPL21 (ENSMMNG00015021206) #27	IGHMBP2 (ENSMMNG00015021229) #28	ENSMMNG00015021257 #29	MRGPRF (ENSMMNG00015021269) #30	TPCN2 (ENSMMNG00015021380) #31	CCND1 (ENSMMNG00015021479) #32	ENSMMNG00015021499 #33	FGF19 (ENSMMNG00015021518) #34	FGF4 (ENSMMNG00015021528) #35	ENSMMNG00015021536 #36
Beluga whale	MODERN SPECIES	7	CABP2 (ENSDLEG00000007398) #7	ENSDLEG00000007392	ENSDLEG00000007379	NDUFV1 (ENSDLEG00000007370) #9	ENSDLEG00000007368 #10	ENSDLEG00000007357 #11	TBX10 (ENSDLEG00000007345) #12	ENSDLEG00000007341 #14	UNC93B1 (ENSDLEG00000007327) #15	ENSDLEG00000007316 ##14	NDUFS8 (ENSDLEG00000007301) #17	TCIRG1 (ENSDLEG00000007283) #18	CHKA (ENSDLEG00000007265) #19	KMT5B (ENSDLEG00000007251) #20	ENSDLEG00000007238 #21	LRP5 (ENSDLEG00000006885) #22	PPP6R3 (ENSDLEG00000006813) #23	GAL (ENSDLEG00000006803) #24	ENSDLEG00000006799	TESMIN (ENSDLEG00000006791) #25	CPT1A (ENSDLEG00000006719) #26	MRPL21 (ENSDLEG00000006686) #27	IGHMBP2 (ENSDLEG00000006566) #28	ENSDLEG00000006544 #29	MRGPRF (ENSDLEG00000006538) #30	TPCN2 (ENSDLEG00000006495) #31	CCND1 (ENSDLEG00000006485) #32	ENSDLEG00000006473	ENSDLEG00000006464 #34	FGF4 (ENSDLEG00000006458) #35	FGF3 (ENSDLEG00000006451) #36
Vaquita	MODERN SPECIES	19	CDK2AP2 (ENSPSNG00000011634)	CABP2 (ENSPSNG00000011691) #7	ENSPSNG00000011890	ENSPSNG00000012038	NDUFV1 (ENSPSNG00000012099) #9	ENSPSNG00000012192 #11	TBX10 (ENSPSNG00000012218) #12	ALDH3B2 (ENSPSNG00000012373) #14	UNC93B1 (ENSPSNG00000012748) #15	ENSPSNG00000012832 ##14	NDUFS8 (ENSPSNG00000013024) #17	TCIRG1 (ENSPSNG00000013176) #18	CHKA (ENSPSNG00000013362) #19	KMT5B (ENSPSNG00000013500) #20	ENSPSNG00000013665 #21	LRP5 (ENSPSNG00000013733) #22	PPP6R3 (ENSPSNG00000014158) #23	GAL (ENSPSNG00000015309) #24	TESMIN (ENSPSNG00000015408) #25	ENSPSNG00000015638	CPT1A (ENSPSNG00000015716) #26	MRPL21 (ENSPSNG00000015914) #27	IGHMBP2 (ENSPSNG00000016024) #28	MRGPRF (ENSPSNG00000016200) #30	TPCN2 (ENSPSNG00000016263) #31	CCND1 (ENSPSNG00000016389) #32	ENSPSNG00000016465 #33	FGF19 (ENSPSNG00000016539) #34	FGF4 (ENSPSNG00000016594) #35	ENSPSNG00000016648 #36	ANO1 (ENSPSNG00000016772) #37
Dolphin	MODERN SPECIES	1371																LRP5 (ENSTTRG00000016402) #22	PPP6R3 (ENSTTRG00000016403) #23
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	7	ANKRD13D (ENSPCTG00005010564)	SSH3 (ENSPCTG00005010770)	POLD4 (ENSPCTG00005011022)	CLCF1 (ENSPCTG00005011093)	ENSPCTG00005011165 #9	ENSPCTG00005011185 #9	ENSPCTG00005011240 #11	ENSPCTG00005011272	UNC93B1 (ENSPCTG00005011356) #15	ALDH3B1 (ENSPCTG00005011416) #16	NDUFS8 (ENSPCTG00005011545) #17	TCIRG1 (ENSPCTG00005011681) #18	CHKA (ENSPCTG00005011739) #19	KMT5B (ENSPCTG00005012015) #20	C16H11orf24 (ENSPCTG00005012094) #21	LRP5 (ENSPCTG00005012293) #22	PPP6R3 (ENSPCTG00005014547) #23	ENSPCTG00005014980	GAL (ENSPCTG00005014998) #24	TESMIN (ENSPCTG00005015085) #25
Sperm whale	MODERN SPECIES	1098																ENSPCTG00005013393 #22
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Caniformia	ANCESTRAL SPECIES	21	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049.f #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049.f #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000164125.b	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049.f #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c.a #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Ursus	ANCESTRAL SPECIES	21	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000163889	ENSGT00940000163374	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049.f #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c.a.a #29
American black bear	MODERN SPECIES	2699																LRP5 (ENSUAMG00000019028) #22
Polar bear	MODERN SPECIES	328	CABP2 (ENSUMAG00000013041) #7	ENSUMAG00000013046	ENSUMAG00000013053	NDUFV1 (ENSUMAG00000013061) #9	ENSUMAG00000013065 #10	NUDT8 (ENSUMAG00000013078)	ENSUMAG00000013092	ENSUMAG00000013104 #14	UNC93B1 (ENSUMAG00000013118) #15	ENSUMAG00000013125 #16	NDUFS8 (ENSUMAG00000013128) #17	ENSUMAG00000013132 #18	CHKA (ENSUMAG00000013148) #19	KMT5B (ENSUMAG00000013196) #20	ENSUMAG00000013275 #21	LRP5 (ENSUMAG00000013361) #22	PPP6R3 (ENSUMAG00000014110) #23	GAL (ENSUMAG00000014141) #24	TESMIN (ENSUMAG00000014146) #25	CPT1A (ENSUMAG00000014460) #26	MRPL21 (ENSUMAG00000018330) #27	IGHMBP2 (ENSUMAG00000018347) #28	ENSUMAG00000018420 #29
Giant Panda	MODERN SPECIES	7	CABP2 (ENSAMEG00000001006) #7	ENSAMEG00000001020	NDUFV1 (ENSAMEG00000001049) #9	ENSAMEG00000001078 #10	ENSAMEG00000027070 #11	TBX10 (ENSAMEG00000001098) #12	ALDH3B2 (ENSAMEG00000029412) #14	ENSAMEG00000031445	UNC93B1 (ENSAMEG00000001141) #15	ALDH3B1 (ENSAMEG00000001158) #16	NDUFS8 (ENSAMEG00000001217) #17	TCIRG1 (ENSAMEG00000001230) #18	CHKA (ENSAMEG00000001272) #19	KMT5B (ENSAMEG00000001298) #20	ENSAMEG00000030515 #21	LRP5 (ENSAMEG00000001320) #22	PPP6R3 (ENSAMEG00000008694) #23	GAL (ENSAMEG00000008690) #24	TESMIN (ENSAMEG00000008676) #25	CPT1A (ENSAMEG00000008595) #26	ENSAMEG00000008591 #27	IGHMBP2 (ENSAMEG00000008568) #28	MRGPRD (ENSAMEG00000027443) #29	MRGPRF (ENSAMEG00000001626) #30	TPCN2 (ENSAMEG00000001559) #31	ENSAMEG00000001950 #32	ENSAMEG00000001983 #33	FGF19 (ENSAMEG00000029958) #34	FGF4 (ENSAMEG00000001992) #35	ENSAMEG00000025861 #36	ENSAMEG00000026287 #36
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00960000191071	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049.f #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Ferret	MODERN SPECIES	233	CABP2 (ENSMPUG00000003977) #7	ENSMPUG00000004023	ENSMPUG00000004029	NDUFV1 (ENSMPUG00000004041) #9	ENSMPUG00000004052 #10	ENSMPUG00000004064 #11	TBX10 (ENSMPUG00000004076) #12	ENSMPUG00000004086 #14	UNC93B1 (ENSMPUG00000004165) #15	ALDH3B1 (ENSMPUG00000004179) #16	NDUFS8 (ENSMPUG00000004193) #17	TCIRG1 (ENSMPUG00000004236) #18	CHKA (ENSMPUG00000004254) #19	KMT5B (ENSMPUG00000004326) #20	ENSMPUG00000004339 #21	LRP5 (ENSMPUG00000004345) #22	PPP6R3 (ENSMPUG00000004357) #23	GAL (ENSMPUG00000004372) #24	TESMIN (ENSMPUG00000004382) #25	CPT1A (ENSMPUG00000004418) #26	MRPL21 (ENSMPUG00000004430) #27	IGHMBP2 (ENSMPUG00000004439) #28	MRGPRD (ENSMPUG00000004515) #29	MRGPRF (ENSMPUG00000004529) #30	TPCN2 (ENSMPUG00000004534) #31	ENSMPUG00000004558	CCND1 (ENSMPUG00000004567) #32	FGF19 (ENSMPUG00000004606) #34	FGF4 (ENSMPUG00000004613) #35	ENSMPUG00000004643 #36	ENSMPUG00000004650
American mink	MODERN SPECIES	104	NDUFV1 (ENSNVIG00000012828) #9	ENSNVIG00000012818 #11	ENSNVIG00000012787 #10	TBX10 (ENSNVIG00000012771) #12	ALDH3B2 (ENSNVIG00000012740) #14	ENSNVIG00000012729	UNC93B1 (ENSNVIG00000012714) #15	ENSNVIG00000012672 #16	NDUFS8 (ENSNVIG00000012663) #17	ENSNVIG00000012658 #18	ENSNVIG00000012648 #18	ENSNVIG00000012636 #18	CHKA (ENSNVIG00000012580) #19	KMT5B (ENSNVIG00000012483) #20	ENSNVIG00000012467 #21	LRP5 (ENSNVIG00000012415) #22	PPP6R3 (ENSNVIG00000011985) #23	ENSNVIG00000011907 #24	TESMIN (ENSNVIG00000011879) #25	CPT1A (ENSNVIG00000011801) #26	MRPL21 (ENSNVIG00000011766) #27	IGHMBP2 (ENSNVIG00000011737) #28	MRGPRD (ENSNVIG00000011721) #29	MRGPRF (ENSNVIG00000011699) #30	TPCN2 (ENSNVIG00000011621) #31	ENSNVIG00000011596 #32	LTO1 (ENSNVIG00000011554) #33	FGF19 (ENSNVIG00000011538) #34	FGF4 (ENSNVIG00000011535) #35	FGF3 (ENSNVIG00000011528) #36	ANO1 (ENSNVIG00000011432) #37
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049.e.b #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.d #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049.e.b #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.c #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Dingo	MODERN SPECIES	36	CABP2 (ENSCAFG00020001633) #7	ENSCAFG00020001669	ENSCAFG00020001675	ENSCAFG00020001698 #9	ENSCAFG00020001779 #10	NUDT8 (ENSCAFG00020001816)	TBX10 (ENSCAFG00020001823) #12	ALDH3B2 (ENSCAFG00020001840) #14	UNC93B1 (ENSCAFG00020001896) #15	ENSCAFG00020001904 ##14	ENSCAFG00020001910 #17	TCIRG1 (ENSCAFG00020001934) #18	CHKA (ENSCAFG00020001949) #19	KMT5B (ENSCAFG00020001997) #20	ENSCAFG00020002089 #21	LRP5 (ENSCAFG00020002095) #22	PPP6R3 (ENSCAFG00020002106) #23	GAL (ENSCAFG00020002120) #24	TESMIN (ENSCAFG00020002130) #25	ENSCAFG00020002152	CPT1A (ENSCAFG00020002153) #26
Dog	MODERN SPECIES	9	CABP2 (ENSCAFG00845009417) #7	ENSCAFG00845009326	GSTP1 (ENSCAFG00845009240)	NDUFV1 (ENSCAFG00845009152) #9	ENSCAFG00845009108 #10	ENSCAFG00845009072 #11	TBX10 (ENSCAFG00845009035) #12	ALDH3B2 (ENSCAFG00845008948) #14	UNC93B1 (ENSCAFG00845008909) #15	ENSCAFG00845008762 ##14	NDUFS8 (ENSCAFG00845008677) #17	TCIRG1 (ENSCAFG00845008465) #18	CHKA (ENSCAFG00845008304) #19	KMT5B (ENSCAFG00845008157) #20	ENSCAFG00845008076 #21	LRP5 (ENSCAFG00845007778) #22	PPP6R3 (ENSCAFG00845007185) #23	GAL (ENSCAFG00845006857) #24	ENSCAFG00845006839	ENSCAFG00845006803 #25	CPT1A (ENSCAFG00845006637) #26	ENSCAFG00845006503 #27	IGHMBP2 (ENSCAFG00845006112) #28	MRGPRD (ENSCAFG00845006017) #29	MRGPRF (ENSCAFG00845005992) #30	TPCN2 (ENSCAFG00845005889) #31	CCND1 (ENSCAFG00845015348) #32	ENSCAFG00845015244 #33	FGF19 (ENSCAFG00845015136) #34	FGF4 (ENSCAFG00845015112) #35	FGF3 (ENSCAFG00845015080) #36
Red fox	MODERN SPECIES	49	CABP2 (ENSVVUG00000010286) #7	ENSVVUG00000010271	ENSVVUG00000010240	NDUFV1 (ENSVVUG00000010224) #9	ENSVVUG00000010218 #10	NUDT8 (ENSVVUG00000010211)	ENSVVUG00000010192	UNC93B1 (ENSVVUG00000010187) #15	ENSVVUG00000010184 ##14	ENSVVUG00000010174 #17	TCIRG1 (ENSVVUG00000010160) #18	CHKA (ENSVVUG00000010123) #19	ENSVVUG00000010120	KMT5B (ENSVVUG00000010104) #20	CUNH11orf24 (ENSVVUG00000010101) #21	LRP5 (ENSVVUG00000005065) #22	PPP6R3 (ENSVVUG00000004914) #23	ENSVVUG00000004883 #24	TESMIN (ENSVVUG00000004876) #25	CPT1A (ENSVVUG00000004839) #26	ENSVVUG00000004820 #27	IGHMBP2 (ENSVVUG00000004811) #28	MRGPRF (ENSVVUG00000004804) #30	TPCN2 (ENSVVUG00000004753) #31	CCND1 (ENSVVUG00000004739) #32	ENSVVUG00000004719 #33	ENSVVUG00000004714	FGF19 (ENSVVUG00000004712) #34	FGF4 (ENSVVUG00000004705) #35	FGF3 (ENSVVUG00000004701) #36	ANO1 (ENSVVUG00000004627) #37
Felidae	ANCESTRAL SPECIES		ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Panthera	ANCESTRAL SPECIES	18	ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00940000159796 #7	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37	ENSGT00390000002105
lion	MODERN SPECIES	56														KMT5B (ENSPLOG00000016932) #20	ENSPLOG00000017350 #21	LRP5 (ENSPLOG00000017371) #22	PPP6R3 (ENSPLOG00000017745) #23	GAL (ENSPLOG00000019206) #24	TESMIN (ENSPLOG00000019256) #25	CPT1A (ENSPLOG00000019396) #26	ENSPLOG00000019447 #27	IGHMBP2 (ENSPLOG00000019507) #28	MRGPRF (ENSPLOG00000019791) #30	TPCN2 (ENSPLOG00000019933) #31	CCND1 (ENSPLOG00000020328) #32	LTO1 (ENSPLOG00000020370) #33	FGF19 (ENSPLOG00000020417) #34	FGF4 (ENSPLOG00000020437) #35	FGF3 (ENSPLOG00000020465) #36
leopard	MODERN SPECIES	64	ENSPPRG00000007615	ENSPPRG00000006958	NDUFV1 (ENSPPRG00000006947) #9	ENSPPRG00000006725 #10	ENSPPRG00000006340 #11	TBX10 (ENSPPRG00000006221) #12	ALDH3B2 (ENSPPRG00000006205) #14	UNC93B1 (ENSPPRG00000006045) #15	ENSPPRG00000005565 ##14	NDUFS8 (ENSPPRG00000004781) #17	ENSPPRG00000004705 #18	ENSPPRG00000004626 #18	CHKA (ENSPPRG00000003923) #19	KMT5B (ENSPPRG00000002092) #20	ENSPPRG00000001623	LRP5 (ENSPPRG00000001607) #22	PPP6R3 (ENSPPRG00000000661) #23	GAL (ENSPPRG00000023433) #24	TESMIN (ENSPPRG00000023616) #25	CPT1A (ENSPPRG00000023904) #26	MRPL21 (ENSPPRG00000024109) #27	IGHMBP2 (ENSPPRG00000024194) #28	MRGPRF (ENSPPRG00000024308) #30	TPCN2 (ENSPPRG00000024406) #31	CCND1 (ENSPPRG00000024642) #32	LTO1 (ENSPPRG00000024675) #33	FGF19 (ENSPPRG00000024723) #34	FGF4 (ENSPPRG00000024731) #35	FGF3 (ENSPPRG00000024743) #36	ANO1 (ENSPPRG00000024762) #37	FADD (ENSPPRG00000024863)
Tiger	MODERN SPECIES	461			ENSPTIG00000022063	NDUFV1 (ENSPTIG00000021461) #9	ENSPTIG00000019451 #10	ENSPTIG00000018602 #11	TBX10 (ENSPTIG00000017457) #12	ALDH3B2 (ENSPTIG00000010435) #14	ENSPTIG00000008967 #15	ALDH3B1 (ENSPTIG00000003636) #16	NDUFS8 (ENSPTIG00000020944) #17	ENSPTIG00000020468 #18	CHKA (ENSPTIG00000017888) #19	ENSPTIG00000014475 #20	ENSPTIG00000013831	LRP5 (ENSPTIG00000009714) #22	PPP6R3 (ENSPTIG00000015409) #23	TESMIN (ENSPTIG00000011695) #25	CPT1A (ENSPTIG00000005864) #26	MRPL21 (ENSPTIG00000000955) #27	ENSPTIG00000020123	MRGPRF (ENSPTIG00000019368) #30	TPCN2 (ENSPTIG00000013302) #31	ENSPTIG00000012911 #32	LTO1 (ENSPTIG00000008634) #33	FGF19 (ENSPTIG00000007495) #34	ANO1 (ENSPTIG00000021763) #37	ENSPTIG00000007413	PPFIA1 (ENSPTIG00000016893)	CTTN (ENSPTIG00000013925)
Cat	MODERN SPECIES	241	PITPNM1 (ENSFCAG00000001751)	CDK2AP2 (ENSFCAG00000042271)	CABP2 (ENSFCAG00000001754) #7	GSTP1 (ENSFCAG00000001755)	NDUFV1 (ENSFCAG00000001757) #9	ENSFCAG00000022755 #10	TBX10 (ENSFCAG00000001760) #12	ENSFCAG00000044091 #14	UNC93B1 (ENSFCAG00000002986) #15	ENSFCAG00000026709 ##14	NDUFS8 (ENSFCAG00000002988) #17	TCIRG1 (ENSFCAG00000002995) #18	CHKA (ENSFCAG00000006219) #19	KMT5B (ENSFCAG00000009067) #20	ENSFCAG00000042941 #21	LRP5 (ENSFCAG00000012666) #22	PPP6R3 (ENSFCAG00000005076) #23	GAL (ENSFCAG00000023993) #24	TESMIN (ENSFCAG00000025862) #25	CPT1A (ENSFCAG00000028060) #26	MRPL21 (ENSFCAG00000005779) #27	ENSFCAG00000049624 #28	IGHMBP2 (ENSFCAG00000010879) #28	ENSFCAG00000052440	MRGPRF (ENSFCAG00000010885) #30	TPCN2 (ENSFCAG00000002792) #31	CCND1 (ENSFCAG00000008358) #32	LTO1 (ENSFCAG00000026606) #33	FGF19 (ENSFCAG00000027163) #34	FGF4 (ENSFCAG00000036639) #35	FGF3 (ENSFCAG00000043034) #36
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00940000159796 #7	ENSGT00940000162460 #8	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00390000001189.b #13	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000162915 #16	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36	ENSGT00940000157182 #37
Microbat	MODERN SPECIES	1351	PITPNM1 (ENSMLUG00000011222)	CDK2AP2 (ENSMLUG00000011488)	CABP2 (ENSMLUG00000011504) #7	GSTP1 (ENSMLUG00000011529) #8	NDUFV1 (ENSMLUG00000011539) #9	ENSMLUG00000026150 #10	TBX10 (ENSMLUG00000011576) #12	ENSMLUG00000011588 #13	ALDH3B2 (ENSMLUG00000028367) #14	UNC93B1 (ENSMLUG00000017610) #15	ALDH3B1 (ENSMLUG00000029407) #16	NDUFS8 (ENSMLUG00000017611) #17	TCIRG1 (ENSMLUG00000017612) #18	CHKA (ENSMLUG00000017614) #19	KMT5B (ENSMLUG00000008196) #20	LRP5 (ENSMLUG00000001206) #22	PPP6R3 (ENSMLUG00000013121) #23	ENSMLUG00000026507 #24
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010021451	ENSRFEG00010021433 #8	NDUFV1 (ENSRFEG00010021407) #9	ENSRFEG00010021394 #10	ENSRFEG00010021387 #11	TBX10 (ENSRFEG00010021376) #12	ACY3 (ENSRFEG00010021361) #13	ENSRFEG00010021357 #14	UNC93B1 (ENSRFEG00010021346) #15	ENSRFEG00010021317 #14	NDUFS8 (ENSRFEG00010021301) #17	TCIRG1 (ENSRFEG00010021289) #18	CHKA (ENSRFEG00010021236) #19	KMT5B (ENSRFEG00010021206) #20	ENSRFEG00010021193 #21	LRP5 (ENSRFEG00010021140) #22	PPP6R3 (ENSRFEG00010021009) #23	GAL (ENSRFEG00010020955) #24	TESMIN (ENSRFEG00010020904) #25	CPT1A (ENSRFEG00010020866) #26	MRPL21 (ENSRFEG00010020842) #27	IGHMBP2 (ENSRFEG00010020811) #28	ENSRFEG00010020788 #29	MRGPRF (ENSRFEG00010020778) #30	TPCN2 (ENSRFEG00010020715) #31	CCND1 (ENSRFEG00010020663) #32	LTO1 (ENSRFEG00010020618) #33	FGF19 (ENSRFEG00010020594) #34	FGF4 (ENSRFEG00010020567) #35	FGF3 (ENSRFEG00010020546) #36	ANO1 (ENSRFEG00010020393) #37
Megabat	MODERN SPECIES	1727																LRP5 (ENSPVAG00000001586) #22
Equus	ANCESTRAL SPECIES	11	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000163435.e.b	ENSGT00390000010641 #9	ENSGT00940000162875 #10	ENSGT00940000162775 #11	ENSGT00940000154816.a.a #12	ENSGT00940000155904.e.b #14	ENSGT00530000063359.B #15	ENSGT00940000155904.e.a ##14	ENSGT00390000003049 #17	ENSGT00950000182881.a.b.a.b #18	ENSGT00950000182939.a.b.b #19	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #32	ENSGT00390000009426 #33	ENSGT00940000160601 #34	ENSGT00940000158825 #35	ENSGT00940000161128 #36
Horse	MODERN SPECIES	3	CDK2AP2 (ENSECAG00000020079)	CABP2 (ENSECAG00000020097) #7	ENSECAG00000020462	NDUFV1 (ENSECAG00000021477) #9	ENSECAG00000054975	DOC2G (ENSECAG00000022087) #10	TBX10 (ENSECAG00000022406) #12	ALDH3B2 (ENSECAG00000000896) #14	UNC93B1 (ENSECAG00000007813) #15	ALDH3B1 (ENSECAG00000007907) ##14	NDUFS8 (ENSECAG00000010175) #17	TCIRG1 (ENSECAG00000010196) #18	CHKA (ENSECAG00000011539) #19	KMT5B (ENSECAG00000012952) #20	C12H11orf24 (ENSECAG00000028930) #21	LRP5 (ENSECAG00000013180) #22	PPP6R3 (ENSECAG00000015322) #23	GAL (ENSECAG00000016579) #24	CPT1A (ENSECAG00000016852) #26	MRPL21 (ENSECAG00000019258) #27	IGHMBP2 (ENSECAG00000019360) #28	ENSECAG00000035247 #29	ENSECAG00000019576 #29	MRGPRF (ENSECAG00000019588) #30	TPCN2 (ENSECAG00000019619) #31	CCND1 (ENSECAG00000038536) #32	LTO1 (ENSECAG00000020265) #33	FGF19 (ENSECAG00000036646) #34	FGF4 (ENSECAG00000031103) #35	FGF3 (ENSECAG00000031321) #36	ANO1 (ENSECAG00000020314) #37
Donkey	MODERN SPECIES	21	ENSEASG00005005960	ENSEASG00005026638	NDUFV1 (ENSEASG00005005962) #9	ENSEASG00005005966 #10	ENSEASG00005005969 #11	TBX10 (ENSEASG00005005973) #12	ALDH3B2 (ENSEASG00005005982) #14	ENSEASG00005034466	UNC93B1 (ENSEASG00005005996) #15	ENSEASG00005005998 ##14	NDUFS8 (ENSEASG00005005999) #17	TCIRG1 (ENSEASG00005006001) #18	CHKA (ENSEASG00005006007) #19	KMT5B (ENSEASG00005006021) #20	ENSEASG00005036637 #21	LRP5 (ENSEASG00005006074) #22	PPP6R3 (ENSEASG00005006224) #23	GAL (ENSEASG00005007730) #24	TESMIN (ENSEASG00005007731) #25	CPT1A (ENSEASG00005007732) #26	ENSEASG00005007733 #27	ENSEASG00005032095 #29	ENSEASG00005007740 #29	IGHMBP2 (ENSEASG00005007735) #28	MRGPRF (ENSEASG00005007743) #30	TPCN2 (ENSEASG00005007747) #31	SMIM38 (ENSEASG00005030431)	ENSEASG00005029364	CCND1 (ENSEASG00005007754) #32	LTO1 (ENSEASG00005028684) #33	FGF19 (ENSEASG00005034459) #34