Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Glires	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Rodentia	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Muroidea	ANCESTRAL SPECIES	68	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Murinae	ANCESTRAL SPECIES	28	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Rat	MODERN SPECIES	3	LOC120095889 (ENSRNOG00000050264) #7	Wasf3 (ENSRNOG00000048898) #8	Gpr12 (ENSRNOG00000039832) #9	Usp12 (ENSRNOG00000033411) #10	Rpl21 (ENSRNOG00000000957) #11	Rasl11a (ENSRNOG00000000956) #12	Gtf3a (ENSRNOG00000050016) #13	Mtif3 (ENSRNOG00000070811) #14	Lnx2 (ENSRNOG00000000955) #15	Polr1d (ENSRNOG00000000954) #16	Gsx1 (ENSRNOG00000000952) #17	Pdx1 (ENSRNOG00000046458) #18	Cdx2 (ENSRNOG00000032759) #19	Urad (ENSRNOG00000050360) #20	Flt3 (ENSRNOG00000054764) #21	Pan3 (ENSRNOG00000000942) #22	Flt1 (ENSRNOG00000000940) #23	Pomp (ENSRNOG00000049229) #24	Slc46a3 (ENSRNOG00000000937) #25	Mtus2 (ENSRNOG00000032410) #26	Slc7a1 (ENSRNOG00000000924) #27	Katnal1 (ENSRNOG00000047618) #28	Rpl35a-ps6 (ENSRNOG00000069961) #29	AABR07035218.1 (ENSRNOG00000029813) #30	Uspl1 (ENSRNOG00000000909) #31	Alox5ap (ENSRNOG00000000907) #32	AABR07035203.1 (ENSRNOG00000060198) #33	Medag (ENSRNOG00000000906) #34	Tex26 (ENSRNOG00000000905) #35	Wdr95 (ENSRNOG00000000904) #36	Hsph1 (ENSRNOG00000000902) #37
Mus	ANCESTRAL SPECIES	17	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
spretus	MODERN SPECIES	14	Cdk8 (MGP_SPRETEiJ_G0029023)	Wasf3 (MGP_SPRETEiJ_G0029024) #8	Gpr12 (MGP_SPRETEiJ_G0029025) #9	Usp12 (MGP_SPRETEiJ_G0029026) #10	MGP_SPRETEiJ_G0029027 ##11	Rasl11a (MGP_SPRETEiJ_G0029028) #12	Gtf3a (MGP_SPRETEiJ_G0029029) #13	Mtif3 (MGP_SPRETEiJ_G0029030) #14	Lnx2 (MGP_SPRETEiJ_G0029031) #15	Polr1d (MGP_SPRETEiJ_G0029032) #16	Gsx1 (MGP_SPRETEiJ_G0029033) #17	Pdx1 (MGP_SPRETEiJ_G0029034) #18	Cdx2 (MGP_SPRETEiJ_G0029035) #19	Urad (MGP_SPRETEiJ_G0029036) #20	Flt3 (MGP_SPRETEiJ_G0029037) #21	Pan3 (MGP_SPRETEiJ_G0029038) #22	Flt1 (MGP_SPRETEiJ_G0029039) #23	Pomp (MGP_SPRETEiJ_G0029040) ##24	Slc46a3 (MGP_SPRETEiJ_G0029041) #25	Mtus2 (MGP_SPRETEiJ_G0029042) #26	Slc7a1 (MGP_SPRETEiJ_G0029043) #27	Ubl3 (MGP_SPRETEiJ_G0029044)	MGP_SPRETEiJ_G0029045 #28	MGP_SPRETEiJ_G0029046 #28	MGP_SPRETEiJ_G0029047 ##30	Uspl1 (MGP_SPRETEiJ_G0029048) #31	Alox5ap (MGP_SPRETEiJ_G0029049) #32	Medag (MGP_SPRETEiJ_G0029050) #34	Tex26 (MGP_SPRETEiJ_G0029051) #35	Wdr95 (MGP_SPRETEiJ_G0029052) #36	Hsph1 (MGP_SPRETEiJ_G0029053) #37
Steppe mouse	MODERN SPECIES	3364	Gpr12 (ENSMSIG00000024129) #9	ENSMSIG00000024119	Usp12 (ENSMSIG00000024096) #10	ENSMSIG00000024049 ##11	Rasl11a (ENSMSIG00000024039) #12	Gtf3a (ENSMSIG00000024026) #13	Mtif3 (ENSMSIG00000024005) #14	Lnx2 (ENSMSIG00000023999) #15	ENSMSIG00000023978 #16	Gsx1 (ENSMSIG00000023969) #17	Pdx1 (ENSMSIG00000023956) #18	Cdx2 (ENSMSIG00000023947) #19	ENSMSIG00000023941	ENSMSIG00000023930	Flt3 (ENSMSIG00000023851) #21	Pan3 (ENSMSIG00000023687) #22	Flt1 (ENSMSIG00000023642) #23	ENSMSIG00000023628 ##7	Pomp (ENSMSIG00000023598) ##24	Slc46a3 (ENSMSIG00000023578) #25	Mtus2 (ENSMSIG00000023484) #26	Slc7a1 (ENSMSIG00000023421) #27	Ubl3 (ENSMSIG00000023402)	Katnal1 (ENSMSIG00000023377) #28	ENSMSIG00000023332 ##30	Uspl1 (ENSMSIG00000023285) #31	Alox5ap (ENSMSIG00000023243) #32	ENSMSIG00000023226 #33	Medag (ENSMSIG00000023188) #34	Tex26 (ENSMSIG00000023128) #35	Wdr95 (ENSMSIG00000023065) #36
Mouse	MODERN SPECIES	14	Gm3409 (ENSMUSG00000096664)	Gm3415 (ENSMUSG00000095557)	Gpr12 (ENSMUSG00000041468) #9	Usp12 (ENSMUSG00000029640) #10	Rpl21 (ENSMUSG00000041453) ##11	Rasl11a (ENSMUSG00000029641) #12	Gtf3a (ENSMUSG00000016503) #13	Mtif3 (ENSMUSG00000016510) #14	Lnx2 (ENSMUSG00000016520) #15	Polr1d (ENSMUSG00000029642) #16	Gsx1 (ENSMUSG00000053129) #17	Pdx1 (ENSMUSG00000029644) #18	Cdx2 (ENSMUSG00000029646) #19	Urad (ENSMUSG00000075543) #20	Flt3 (ENSMUSG00000042817) #21	Pan3 (ENSMUSG00000029647) #22	Flt1 (ENSMUSG00000029648) #23	Pomp (ENSMUSG00000029649) ##24	Slc46a3 (ENSMUSG00000029650) #25	Mtus2 (ENSMUSG00000029651) #26	Slc7a1 (ENSMUSG00000041313) #27	Ubl3 (ENSMUSG00000001687)	Katnal1 (ENSMUSG00000041298) #28	Hmgb1 (ENSMUSG00000066551) ##30	Uspl1 (ENSMUSG00000041264) #31	Alox5ap (ENSMUSG00000060063) #32	Medag (ENSMUSG00000029659) #34	Tex26 (ENSMUSG00000029660) #35	Wdr95 (ENSMUSG00000029658) #36	Hsph1 (ENSMUSG00000029657) #37	B3glct (ENSMUSG00000051950)
Ryukyu mouse	MODERN SPECIES	14	Cdk8 (MGP_CAROLIEiJ_G0028025)	Wasf3 (MGP_CAROLIEiJ_G0028026) #8	Gpr12 (MGP_CAROLIEiJ_G0028027) #9	Usp12 (MGP_CAROLIEiJ_G0028028) #10	Rpl21 (MGP_CAROLIEiJ_G0028029) ##11	Rasl11a (MGP_CAROLIEiJ_G0028030) #12	Gtf3a (MGP_CAROLIEiJ_G0028031) #13	Mtif3 (MGP_CAROLIEiJ_G0028032) #14	Lnx2 (MGP_CAROLIEiJ_G0028033) #15	Polr1d (MGP_CAROLIEiJ_G0028034) #16	Gsx1 (MGP_CAROLIEiJ_G0028035) #17	Pdx1 (MGP_CAROLIEiJ_G0028036) #18	Cdx2 (MGP_CAROLIEiJ_G0028037) #19	Urad (MGP_CAROLIEiJ_G0028038) #20	Flt3 (MGP_CAROLIEiJ_G0028039) #21	Pan3 (MGP_CAROLIEiJ_G0028040) #22	Flt1 (MGP_CAROLIEiJ_G0028041) #23	Pomp (MGP_CAROLIEiJ_G0028042) ##24	Slc46a3 (MGP_CAROLIEiJ_G0028043) #25	Mtus2 (MGP_CAROLIEiJ_G0028044) #26	Slc7a1 (MGP_CAROLIEiJ_G0028045) #27	Ubl3 (MGP_CAROLIEiJ_G0028046)	MGP_CAROLIEiJ_G0028047 #28	MGP_CAROLIEiJ_G0028048 #28	MGP_CAROLIEiJ_G0028049 ##30	Uspl1 (MGP_CAROLIEiJ_G0028050) #31	MGP_CAROLIEiJ_G0028051 #32	Medag (MGP_CAROLIEiJ_G0028052) #34	Tex26 (MGP_CAROLIEiJ_G0028053) #35	Wdr95 (MGP_CAROLIEiJ_G0028054) #36	Hsph1 (MGP_CAROLIEiJ_G0028055) #37
Shrew mouse	MODERN SPECIES	15	Cdk8 (MGP_PahariEiJ_G0024591)	Wasf3 (MGP_PahariEiJ_G0024592) #8	Gpr12 (MGP_PahariEiJ_G0024593) #9	Usp12 (MGP_PahariEiJ_G0024594) #10	MGP_PahariEiJ_G0024595 ##11	Rasl11a (MGP_PahariEiJ_G0024596) #12	Gtf3a (MGP_PahariEiJ_G0024597) #13	Mtif3 (MGP_PahariEiJ_G0024598) #14	Lnx2 (MGP_PahariEiJ_G0024599) #15	Polr1d (MGP_PahariEiJ_G0024600) #16	Gsx1 (MGP_PahariEiJ_G0024601) #17	Pdx1 (MGP_PahariEiJ_G0024602) #18	Cdx2 (MGP_PahariEiJ_G0024603) #19	Urad (MGP_PahariEiJ_G0024604) #20	Flt3 (MGP_PahariEiJ_G0024605) #21	Pan3 (MGP_PahariEiJ_G0024606) #22	Flt1 (MGP_PahariEiJ_G0024607) #23	MGP_PahariEiJ_G0024608	Slc46a3 (MGP_PahariEiJ_G0024609) #25	Mtus2 (MGP_PahariEiJ_G0024610) #26	Slc7a1 (MGP_PahariEiJ_G0024611) #27	Ubl3 (MGP_PahariEiJ_G0024612)	MGP_PahariEiJ_G0024613 #28	MGP_PahariEiJ_G0024614 #28	MGP_PahariEiJ_G0024615 ##30	Uspl1 (MGP_PahariEiJ_G0024616) #31	Alox5ap (MGP_PahariEiJ_G0024617) #32	Medag (MGP_PahariEiJ_G0024618) #34	Tex26 (MGP_PahariEiJ_G0024619) #35	MGP_PahariEiJ_G0024620 #36	Hsph1 (MGP_PahariEiJ_G0024621) #37
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Chinese hamster chok1gshd	MODERN SPECIES	130	Gpr12 (ENSCGRG00001003285) #9	ENSCGRG00001021742 #10	Rpl21 (ENSCGRG00001007602) #11	Rasl11a (ENSCGRG00001014752) #12	Gtf3a (ENSCGRG00001024969) #13	Mtif3 (ENSCGRG00001024612) #14	ENSCGRG00001024532	Lnx2 (ENSCGRG00001022751) #15	Polr1d (ENSCGRG00001021251) #16	Gsx1 (ENSCGRG00001017641) #17	Pdx1 (ENSCGRG00001024891) #18	Cdx2 (ENSCGRG00001024259) #19	Urad (ENSCGRG00001021146) #20	Flt3 (ENSCGRG00001010328) #21	ENSCGRG00001012489	Pan3 (ENSCGRG00001024986) #22	Flt1 (ENSCGRG00001000764) #23	Pomp (ENSCGRG00001000803) ##24	Slc46a3 (ENSCGRG00001023870) #25	ENSCGRG00001001206	Mtus2 (ENSCGRG00001023648) #26	Slc7a1 (ENSCGRG00001019393) #27	Ubl3 (ENSCGRG00001002093)	Katnal1 (ENSCGRG00001024027) #28	ENSCGRG00001018342 #31	Alox5ap (ENSCGRG00001018470) #32	ENSCGRG00001025063	Medag (ENSCGRG00001024417) #34	Tex26 (ENSCGRG00001015836) #35	Wdr95 (ENSCGRG00001015579) #36	Hsph1 (ENSCGRG00001021270) #37
Golden Hamster	MODERN SPECIES	762	Rfc3 (ENSMAUG00000016464)	Gpr12 (ENSMAUG00000015064) #9	ENSMAUG00000010877	Usp12 (ENSMAUG00000010310) #10	ENSMAUG00000006957 #11	Rasl11a (ENSMAUG00000019356) #12	Gtf3a (ENSMAUG00000016253) #13	Mtif3 (ENSMAUG00000011167) #14	Lnx2 (ENSMAUG00000009457) #15	Polr1d (ENSMAUG00000001946) #16	Pdx1 (ENSMAUG00000021082) #18	Cdx2 (ENSMAUG00000020822) #19	Urad (ENSMAUG00000019946) #20	ENSMAUG00000001106	Flt3 (ENSMAUG00000011952) #21	Pan3 (ENSMAUG00000021155) #22	Flt1 (ENSMAUG00000006859) #23	Pomp (ENSMAUG00000006509) ##24	ENSMAUG00000020285	ENSMAUG00000018323 #26	Slc7a1 (ENSMAUG00000000359) #27	Ubl3 (ENSMAUG00000016399)	Katnal1 (ENSMAUG00000007731) #28	ENSMAUG00000017646	ENSMAUG00000013736 #31	Alox5ap (ENSMAUG00000012262) #32	Medag (ENSMAUG00000009604) #34	Tex26 (ENSMAUG00000016345) #35	Wdr95 (ENSMAUG00000014604) #36	Hsph1 (ENSMAUG00000002443) #37	B3glct (ENSMAUG00000018787)
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00940000157104	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Prairie vole	MODERN SPECIES	7	ENSMOCG00000017944	Gpr12 (ENSMOCG00000009890) #9	Usp12 (ENSMOCG00000001714) #10	Rpl21 (ENSMOCG00000003487) ##11	Rasl11a (ENSMOCG00000000626) #12	ENSMOCG00000017124	Gtf3a (ENSMOCG00000004408) #13	Mtif3 (ENSMOCG00000017226) #14	Lnx2 (ENSMOCG00000022088) #15	Polr1d (ENSMOCG00000021288) #16	Gsx1 (ENSMOCG00000002374) #17	Pdx1 (ENSMOCG00000007886) #18	Cdx2 (ENSMOCG00000010222) #19	Urad (ENSMOCG00000018154) #20	Flt3 (ENSMOCG00000015945) #21	Pan3 (ENSMOCG00000001443) #22	Flt1 (ENSMOCG00000019790) #23	ENSMOCG00000000648	Pomp (ENSMOCG00000006131) ##24	Slc46a3 (ENSMOCG00000007090) #25	Mtus2 (ENSMOCG00000013900) #26	Slc7a1 (ENSMOCG00000022298) #27	Ubl3 (ENSMOCG00000012896)	Katnal1 (ENSMOCG00000013914) #28	ENSMOCG00000018161 ##30	ENSMOCG00000018612 #31	Alox5ap (ENSMOCG00000018258) #32	Medag (ENSMOCG00000012447) #34	Tex26 (ENSMOCG00000013830) #35	Wdr95 (ENSMOCG00000021942) #36	Hsph1 (ENSMOCG00000019013) #37
Northern American deer mouse	MODERN SPECIES	15	Wasf3 (ENSPEMG00000011510) #8	ENSPEMG00000030961	Gpr12 (ENSPEMG00000010665) #9	Usp12 (ENSPEMG00000008193) #10	Rpl21 (ENSPEMG00000006041) #11	Rasl11a (ENSPEMG00000004475) #12	Gtf3a (ENSPEMG00000003201) #13	Mtif3 (ENSPEMG00000000930) #14	Lnx2 (ENSPEMG00000008280) #15	Polr1d (ENSPEMG00000006336) #16	Gsx1 (ENSPEMG00000004992) #17	Pdx1 (ENSPEMG00000001176) #18	Cdx2 (ENSPEMG00000000632) #19	Urad (ENSPEMG00000025423) #20	Flt3 (ENSPEMG00000012278) #21	Pan3 (ENSPEMG00000008992) #22	Flt1 (ENSPEMG00000019000) #23	ENSPEMG00000014341 ##24	Slc46a3 (ENSPEMG00000014019) #25	ENSPEMG00000024696	Mtus2 (ENSPEMG00000011863) #26	Slc7a1 (ENSPEMG00000006808) #27	Ubl3 (ENSPEMG00000010779)	Katnal1 (ENSPEMG00000009164) #28	ENSPEMG00000000834 ##30	Uspl1 (ENSPEMG00000003660) #31	Alox5ap (ENSPEMG00000000576) #32	Medag (ENSPEMG00000000331) #34	Tex26 (ENSPEMG00000019024) #35	Wdr95 (ENSPEMG00000016428) #36	Hsph1 (ENSPEMG00000009941) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1878	Usp12 (ENSNGAG00000023867) #10	ENSNGAG00000012493	ENSNGAG00000022375 ##11	Rasl11a (ENSNGAG00000021721) #12	Gtf3a (ENSNGAG00000023691) #13	Mtif3 (ENSNGAG00000022911) #14	Lnx2 (ENSNGAG00000010972) #15	Polr1d (ENSNGAG00000006014) #16	ENSNGAG00000019459	ENSNGAG00000020643	Gsx1 (ENSNGAG00000013964) #17	ENSNGAG00000011527	Pdx1 (ENSNGAG00000024275) #18	Cdx2 (ENSNGAG00000019299) #19	Flt3 (ENSNGAG00000022203) #21	Pan3 (ENSNGAG00000005671) #22	Flt1 (ENSNGAG00000022615) #23	ENSNGAG00000019389 ##24	Slc46a3 (ENSNGAG00000023221) #25	ENSNGAG00000022087	ENSNGAG00000011243 ##26	ENSNGAG00000023043 #26	Slc7a1 (ENSNGAG00000011095) #27	Ubl3 (ENSNGAG00000021531)	Katnal1 (ENSNGAG00000018344) #28	ENSNGAG00000020735 ##30	Uspl1 (ENSNGAG00000021450) #31	Alox5ap (ENSNGAG00000010455) #32	Medag (ENSNGAG00000021713) #34	Tex26 (ENSNGAG00000016306) #35	ENSNGAG00000021744
Lesser Egyptian jerboa	MODERN SPECIES	73	Cdk8 (ENSJJAG00000009532)	Wasf3 (ENSJJAG00000018294) #8	Gpr12 (ENSJJAG00000012507) #9	Usp12 (ENSJJAG00000019341) #10	Rasl11a (ENSJJAG00000020910) #12	Gtf3a (ENSJJAG00000011501) #13	Mtif3 (ENSJJAG00000013006) #14	Lnx2 (ENSJJAG00000014998) #15	ENSJJAG00000022671 #16	ENSJJAG00000009076	Gsx1 (ENSJJAG00000021574) #17	Pdx1 (ENSJJAG00000017468) #18	Cdx2 (ENSJJAG00000010229) #19	Urad (ENSJJAG00000022682) #20	Flt3 (ENSJJAG00000004796) #21	Pan3 (ENSJJAG00000013560) #22	Flt1 (ENSJJAG00000009276) #23	Pomp (ENSJJAG00000014017) ##24	Slc46a3 (ENSJJAG00000015117) #25	ENSJJAG00000008307 #26	Slc7a1 (ENSJJAG00000022034) #27	Ubl3 (ENSJJAG00000016514)	Katnal1 (ENSJJAG00000011429) #28	ENSJJAG00000000696 ##30	ENSJJAG00000014544 #31	Alox5ap (ENSJJAG00000004614) #32	Medag (ENSJJAG00000017396) #34	Tex26 (ENSJJAG00000007098) #35	Wdr95 (ENSJJAG00000015306) #36	Hsph1 (ENSJJAG00000000436) #37	B3glct (ENSJJAG00000022078)
Kangaroo rat	MODERN SPECIES	421	Wasf3 (ENSDORG00000003345) #8	Gpr12 (ENSDORG00000011141) #9	Usp12 (ENSDORG00000009137) #10	ENSDORG00000002224	ENSDORG00000002226 ##11	Rasl11a (ENSDORG00000026016) #12	Gtf3a (ENSDORG00000006079) #13	ENSDORG00000006081 #14	Lnx2 (ENSDORG00000013453) #15	Polr1d (ENSDORG00000029155) #16	Gsx1 (ENSDORG00000029182) #17	Pdx1 (ENSDORG00000008418) #18	Cdx2 (ENSDORG00000005495) #19	Urad (ENSDORG00000025006) #20	Flt3 (ENSDORG00000010727) #21	Pan3 (ENSDORG00000014727) #22	Flt1 (ENSDORG00000014729) #23	Pomp (ENSDORG00000012432) ##24	Slc46a3 (ENSDORG00000012433) #25	ENSDORG00000025782 #26	Slc7a1 (ENSDORG00000006086) #27	ENSDORG00000026706	Ubl3 (ENSDORG00000026903)	Katnal1 (ENSDORG00000012794) #28	ENSDORG00000027930 ##30	Uspl1 (ENSDORG00000007790) #31	Alox5ap (ENSDORG00000006041) #32	Medag (ENSDORG00000008557) #34	ENSDORG00000008558 #35	Wdr95 (ENSDORG00000026485) #36	ENSDORG00000014903 #37
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.c #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.p ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.c #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.p ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00950000182962.a.a #8	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.c #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.p ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Degu	MODERN SPECIES	79	GPR12 (ENSODEG00000006388) #9	USP12 (ENSODEG00000006744) #10	ENSODEG00000005022 ##11	RASL11A (ENSODEG00000005775) #12	GTF3A (ENSODEG00000006725) #13	MTIF3 (ENSODEG00000006818) #14	LNX2 (ENSODEG00000006222) #15	ENSODEG00000005294 #16	ENSODEG00000006454	GSX1 (ENSODEG00000005135) #17	ENSODEG00000019134	PDX1 (ENSODEG00000005235) #18	CDX2 (ENSODEG00000007340) #19	ENSODEG00000007620 #20	FLT3 (ENSODEG00000007884) #21	PAN3 (ENSODEG00000005038) #22	ENSODEG00000006016	ENSODEG00000006274 #23	ENSODEG00000005111 ##24	ENSODEG00000005569	SLC46A3 (ENSODEG00000006238) #25	ENSODEG00000006635	ENSODEG00000005871 #26	SLC7A1 (ENSODEG00000005306) #27	ENSODEG00000005438	UBL3 (ENSODEG00000005571)	KATNAL1 (ENSODEG00000005926) #28	ENSODEG00000006120 ##30	USPL1 (ENSODEG00000007176) #31	ALOX5AP (ENSODEG00000005645) #32	MEDAG (ENSODEG00000005967) #34
Long-tailed chinchilla	MODERN SPECIES	204	CDK8 (ENSCLAG00000003311)	WASF3 (ENSCLAG00000003372) #8	GPR12 (ENSCLAG00000003409) #9	USP12 (ENSCLAG00000003543) #10	Rpl21 (ENSCLAG00000003656) ##11	RASL11A (ENSCLAG00000003867) #12	GTF3A (ENSCLAG00000003912) #13	MTIF3 (ENSCLAG00000004080) #14	LNX2 (ENSCLAG00000004148) #15	POLR1D (ENSCLAG00000017623) #16	ENSCLAG00000004320	GSX1 (ENSCLAG00000004357) #17	PDX1 (ENSCLAG00000006652) #18	CDX2 (ENSCLAG00000006810) #19	FLT3 (ENSCLAG00000007093) #21	PAN3 (ENSCLAG00000007575) #22	FLT1 (ENSCLAG00000008187) #23	POMP (ENSCLAG00000008609) ##24	SLC46A3 (ENSCLAG00000009379) #25
Guinea pig	MODERN SPECIES	6	RNF6 (ENSCPOG00000009120)	CDK8 (ENSCPOG00000040435)	WASF3 (ENSCPOG00000010156) #8	ENSCPOG00000020112	USP12 (ENSCPOG00000005241) #10	ENSCPOG00000008784 ##11	RASL11A (ENSCPOG00000031264) #12	GTF3A (ENSCPOG00000010143) #13	MTIF3 (ENSCPOG00000010148) #14	LNX2 (ENSCPOG00000010152) #15	ENSCPOG00000033461	ENSCPOG00000026854	PDX1 (ENSCPOG00000024534) #18	CDX2 (ENSCPOG00000007276) #19	FLT3 (ENSCPOG00000007285) #21	PAN3 (ENSCPOG00000013349) #22	FLT1 (ENSCPOG00000013357) #23	POMP (ENSCPOG00000001710) ##24	SLC46A3 (ENSCPOG00000015460) #25	ENSCPOG00000005581 #26	SLC7A1 (ENSCPOG00000005590) #27	UBL3 (ENSCPOG00000036242)	KATNAL1 (ENSCPOG00000000804) #28	HMGB1 (ENSCPOG00000031835) ##30	USPL1 (ENSCPOG00000009937) #31	ALOX5AP (ENSCPOG00000032690) #32	MEDAG (ENSCPOG00000003921) #34	ENSCPOG00000007441 #37	ENSCPOG00000035490	B3GLCT (ENSCPOG00000007455)	RXFP2 (ENSCPOG00000009157)
Naked mole-rat female	MODERN SPECIES	2	WASF3 (ENSHGLG00000006350) #8	GPR12 (ENSHGLG00000042343) #9	ENSHGLG00000006711 #10	ENSHGLG00000005660 ##11	RASL11A (ENSHGLG00000005304) #12	ENSHGLG00000004173 #13	MTIF3 (ENSHGLG00000003959) #14	LNX2 (ENSHGLG00000003410) #15	POLR1D (ENSHGLG00000039229) #16	ENSHGLG00000003202	GSX1 (ENSHGLG00000039858) #17	PDX1 (ENSHGLG00000010243) #18	CDX2 (ENSHGLG00000009166) #19	URAD (ENSHGLG00000008479)	FLT3 (ENSHGLG00000005717) #21	PAN3 (ENSHGLG00000018782) #22	FLT1 (ENSHGLG00000003643) #23	ENSHGLG00000008991 ##24	SLC46A3 (ENSHGLG00000007999) #25	ENSHGLG00000039882 #24	ENSHGLG00000012383	ENSHGLG00000013589 #26	ENSHGLG00000019220 #27	ENSHGLG00000033244	UBL3 (ENSHGLG00000040587)	KATNAL1 (ENSHGLG00000003538) #28	ENSHGLG00000003352 ##30	USPL1 (ENSHGLG00000036213) #31	ALOX5AP (ENSHGLG00000013689) #32	MEDAG (ENSHGLG00000037818) #34	TEX26 (ENSHGLG00000018916) #35
Sciuridae	ANCESTRAL SPECIES	34	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.a ##11	ENSGT00940000153284.a.g.a ##10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Marmotini	ANCESTRAL SPECIES	29	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.a ##11	ENSGT00940000153284.a.g.a ##10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00950000183120.e.b.a.a.b.b.b.b ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT01050000244955.a.a	ENSGT00940000158453.a	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.a ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b	ENSGT00940000156630 #28	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Squirrel	MODERN SPECIES	72	SLITRK5 (ENSSTOG00000022257)	GPR12 (ENSSTOG00000011362) #9	ENSSTOG00000023839	USP12 (ENSSTOG00000011364) #10	ENSSTOG00000033637 ##11	RASL11A (ENSSTOG00000023879) #12	GTF3A (ENSSTOG00000013853) #13	MTIF3 (ENSSTOG00000013866) #14	LNX2 (ENSSTOG00000013869) #15	POLR1D (ENSSTOG00000013877) #16	GSX1 (ENSSTOG00000029234) #17	PDX1 (ENSSTOG00000028173) #18	ENSSTOG00000002918 #19	ENSSTOG00000028014 #20	FLT3 (ENSSTOG00000002925) #21	PAN3 (ENSSTOG00000009453) #22	FLT1 (ENSSTOG00000021178) #23	POMP (ENSSTOG00000013687) ##24	SLC46A3 (ENSSTOG00000013694) #25	ENSSTOG00000022794 #26	SLC7A1 (ENSSTOG00000012771) #27	UBL3 (ENSSTOG00000012777)	KATNAL1 (ENSSTOG00000008802) #28	ENSSTOG00000000443 ##30	USPL1 (ENSSTOG00000028023) #31	ALOX5AP (ENSSTOG00000010915) #32	MEDAG (ENSSTOG00000003534) #34	ENSSTOG00000020892 #36	HSPH1 (ENSSTOG00000001700) #37	B3GLCT (ENSSTOG00000001710)	RXFP2 (ENSSTOG00000010636)
Arctic ground squirrel	MODERN SPECIES	58		SLITRK5 (ENSUPAG00010018031)	GPR12 (ENSUPAG00010018043) #9	USP12 (ENSUPAG00010018049) #10	ENSUPAG00010018061 ##11	RASL11A (ENSUPAG00010018073) #12	GTF3A (ENSUPAG00010018082) #13	MTIF3 (ENSUPAG00010018090) #14	LNX2 (ENSUPAG00010018096) #15	POLR1D (ENSUPAG00010018107) #16	GSX1 (ENSUPAG00010018112) #17	PDX1 (ENSUPAG00010018122) #18	CDX2 (ENSUPAG00010018125) #19	ENSUPAG00010018133 #20	FLT3 (ENSUPAG00010018139) #21	PAN3 (ENSUPAG00010000039) #22	FLT1 (ENSUPAG00010000212) #23	POMP (ENSUPAG00010000279) ##24	SLC46A3 (ENSUPAG00010000307) #25	ENSUPAG00010000323	ENSUPAG00010000338 #26	SLC7A1 (ENSUPAG00010000429) #27	UBL3 (ENSUPAG00010000449)	KATNAL1 (ENSUPAG00010000483) #28	ENSUPAG00010000514 ##30	USPL1 (ENSUPAG00010000537) #31	ALOX5AP (ENSUPAG00010000582) #32	MEDAG (ENSUPAG00010000596) #34	TEX26 (ENSUPAG00010000608) #35	ENSUPAG00010000650 #36	HSPH1 (ENSUPAG00010000704) #37
Alpin marmot	MODERN SPECIES	13	ENSMMMG00000021355	SLITRK5 (ENSMMMG00000021362)	GPR12 (ENSMMMG00000021388) #9	ENSMMMG00000021396	ENSMMMG00000021402 ##10	RPL21 (ENSMMMG00000021415) ##11	RASL11A (ENSMMMG00000021424) #12	GTF3A (ENSMMMG00000021436) #13	MTIF3 (ENSMMMG00000021440) #14	LNX2 (ENSMMMG00000021459) #15	POLR1D (ENSMMMG00000021469) #16	GSX1 (ENSMMMG00000021480) #17	CDX2 (ENSMMMG00000021482) #19	ENSMMMG00000021485 #20	FLT3 (ENSMMMG00000021498) #21	PAN3 (ENSMMMG00000021592) #22	FLT1 (ENSMMMG00000021722) #23	POMP (ENSMMMG00000021745) ##24	SLC46A3 (ENSMMMG00000021759) #25	ENSMMMG00000021777 #26	SLC7A1 (ENSMMMG00000021811) #27	UBL3 (ENSMMMG00000021836)	KATNAL1 (ENSMMMG00000021861) #28	ENSMMMG00000021875 ##30	ENSMMMG00000021912 #31	ALOX5AP (ENSMMMG00000021924) #32	MEDAG (ENSMMMG00000021928) #34	TEX26 (ENSMMMG00000021931) #35	ENSMMMG00000021936 #36	HSPH1 (ENSMMMG00000021945) #37	B3GLCT (ENSMMMG00000022023)
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005000440	ENSSVLG00005000420	GPR12 (ENSSVLG00005000385) #9	ENSSVLG00005000350 ##10	ENSSVLG00005000213 ##11	RASL11A (ENSSVLG00005023466) #12	GTF3A (ENSSVLG00005023413) #13	MTIF3 (ENSSVLG00005023396) #14	LNX2 (ENSSVLG00005023366) #15	POLR1D (ENSSVLG00005023318) #16	GSX1 (ENSSVLG00005023295) #17	PDX1 (ENSSVLG00005023276) #18	CDX2 (ENSSVLG00005023249) #19	URAD (ENSSVLG00005023233)	FLT3 (ENSSVLG00005023095) #21	PAN3 (ENSSVLG00005022998) #22	FLT1 (ENSSVLG00005022893) #23	POMP (ENSSVLG00005022839) ##24	SLC46A3 (ENSSVLG00005022784) #25	MTUS2 (ENSSVLG00005022484) #26	SLC7A1 (ENSSVLG00005022416) #27	UBL3 (ENSSVLG00005022374)	KATNAL1 (ENSSVLG00005022343) #28	ENSSVLG00005022302 ##30	USPL1 (ENSSVLG00005022232) #31	ALOX5AP (ENSSVLG00005022177) #32	MEDAG (ENSSVLG00005022152) #34	TEX26 (ENSSVLG00005022083) #35	ENSSVLG00005021904 #36	HSPH1 (ENSSVLG00005021367) #37	B3GLCT (ENSSVLG00005021156)
Lagomorpha	ANCESTRAL SPECIES	166				ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j ##24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27
Rabbit	MODERN SPECIES	468			USP12 (ENSOCUG00000007088) #10	ENSOCUG00000002506 ##11	RASL11A (ENSOCUG00000008121) #12	ENSOCUG00000038419	GTF3A (ENSOCUG00000011713) #13	MTIF3 (ENSOCUG00000011721) #14	LNX2 (ENSOCUG00000015683) #15	ENSOCUG00000015706	GSX1 (ENSOCUG00000023424) #17	PDX1 (ENSOCUG00000004891) #18	CDX2 (ENSOCUG00000004893) #19	URAD (ENSOCUG00000026219)	FLT3 (ENSOCUG00000004897) #21	PAN3 (ENSOCUG00000008509) #22	FLT1 (ENSOCUG00000008523) #23	POMP (ENSOCUG00000010137) ##24	SLC46A3 (ENSOCUG00000010129) #25	ENSOCUG00000013473 #26	ENSOCUG00000030839 #26	SLC7A1 (ENSOCUG00000013493) #27
Pika	MODERN SPECIES	2256																PAN3 (ENSOPRG00000016465) #22	FLT1 (ENSOPRG00000016484) #23	POMP (ENSOPRG00000016517) ##24	SLC46A3 (ENSOPRG00000016527) #25
Tree shrew	MODERN SPECIES	2583																PAN3 (ENSTBEG00000017359) #22	FLT1 (ENSTBEG00000009960) #23