Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b #28	ENSGT00940000156630 #29	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336	ENSGT00390000018451 #33	ENSGT00390000009484 #34	ENSGT00940000162967 #35	ENSGT00940000159635 #36
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b #28	ENSGT00940000156630 #29	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336	ENSGT00390000018451 #33	ENSGT00390000009484 #34	ENSGT00940000162967 #35	ENSGT00940000159635 #36
Mouse	MODERN SPECIES	14	Gm3409 (ENSMUSG00000096664) #7	Gm3415 (ENSMUSG00000095557) #8	Gpr12 (ENSMUSG00000041468) #9	Usp12 (ENSMUSG00000029640) #10	Rpl21 (ENSMUSG00000041453) #11	Rasl11a (ENSMUSG00000029641) #12	Gtf3a (ENSMUSG00000016503) #13	Mtif3 (ENSMUSG00000016510) #14	Lnx2 (ENSMUSG00000016520) #15	Polr1d (ENSMUSG00000029642) #16	Gsx1 (ENSMUSG00000053129) #17	Pdx1 (ENSMUSG00000029644) #18	Cdx2 (ENSMUSG00000029646) #19	Urad (ENSMUSG00000075543) #20	Flt3 (ENSMUSG00000042817) #21	Pan3 (ENSMUSG00000029647) #22	Flt1 (ENSMUSG00000029648) #23	Pomp (ENSMUSG00000029649) #24	Slc46a3 (ENSMUSG00000029650) #25	Mtus2 (ENSMUSG00000029651) #26	Slc7a1 (ENSMUSG00000041313) #27	Ubl3 (ENSMUSG00000001687) #28	Katnal1 (ENSMUSG00000041298) #29	Hmgb1 (ENSMUSG00000066551) #30	Uspl1 (ENSMUSG00000041264) #31	Alox5ap (ENSMUSG00000060063) #32	Medag (ENSMUSG00000029659) #33	Tex26 (ENSMUSG00000029660) #34	Wdr95 (ENSMUSG00000029658) #35	Hsph1 (ENSMUSG00000029657) #36	B3glct (ENSMUSG00000051950) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #26	ENSGT00940000155349 #27	ENSGT00390000004952.b #28	ENSGT00940000156630 #29	ENSGT00950000183120.e.b.a.a.a.n ##30	ENSGT00390000002316 #31	ENSGT00940000158706 #32	ENSGT00960000191336	ENSGT00390000018451 #33	ENSGT00390000009484 #34	ENSGT00940000162967 #35	ENSGT00940000159635 #36
spretus	MODERN SPECIES	14	Cdk8 (MGP_SPRETEiJ_G0029023)	Wasf3 (MGP_SPRETEiJ_G0029024)	Gpr12 (MGP_SPRETEiJ_G0029025) #9	Usp12 (MGP_SPRETEiJ_G0029026) #10	MGP_SPRETEiJ_G0029027 ##11	Rasl11a (MGP_SPRETEiJ_G0029028) #12	Gtf3a (MGP_SPRETEiJ_G0029029) #13	Mtif3 (MGP_SPRETEiJ_G0029030) #14	Lnx2 (MGP_SPRETEiJ_G0029031) #15	Polr1d (MGP_SPRETEiJ_G0029032) #16	Gsx1 (MGP_SPRETEiJ_G0029033) #17	Pdx1 (MGP_SPRETEiJ_G0029034) #18	Cdx2 (MGP_SPRETEiJ_G0029035) #19	Urad (MGP_SPRETEiJ_G0029036) #20	Flt3 (MGP_SPRETEiJ_G0029037) #21	Pan3 (MGP_SPRETEiJ_G0029038) #22	Flt1 (MGP_SPRETEiJ_G0029039) #23	Pomp (MGP_SPRETEiJ_G0029040) #24	Slc46a3 (MGP_SPRETEiJ_G0029041) #25	Mtus2 (MGP_SPRETEiJ_G0029042) #26	Slc7a1 (MGP_SPRETEiJ_G0029043) #27	Ubl3 (MGP_SPRETEiJ_G0029044) #28	MGP_SPRETEiJ_G0029045 #29	MGP_SPRETEiJ_G0029046 #29	MGP_SPRETEiJ_G0029047 ##30	Uspl1 (MGP_SPRETEiJ_G0029048) #31	Alox5ap (MGP_SPRETEiJ_G0029049) #32	Medag (MGP_SPRETEiJ_G0029050) #33	Tex26 (MGP_SPRETEiJ_G0029051) #34	Wdr95 (MGP_SPRETEiJ_G0029052) #35	Hsph1 (MGP_SPRETEiJ_G0029053) #36
Steppe mouse	MODERN SPECIES	3364	Gpr12 (ENSMSIG00000024129) #9	ENSMSIG00000024119	Usp12 (ENSMSIG00000024096) #10	ENSMSIG00000024049 #11	Rasl11a (ENSMSIG00000024039) #12	Gtf3a (ENSMSIG00000024026) #13	Mtif3 (ENSMSIG00000024005) #14	Lnx2 (ENSMSIG00000023999) #15	ENSMSIG00000023978 #16	Gsx1 (ENSMSIG00000023969) #17	Pdx1 (ENSMSIG00000023956) #18	Cdx2 (ENSMSIG00000023947) #19	ENSMSIG00000023941	ENSMSIG00000023930	Flt3 (ENSMSIG00000023851) #21	Pan3 (ENSMSIG00000023687) #22	Flt1 (ENSMSIG00000023642) #23	ENSMSIG00000023628	Pomp (ENSMSIG00000023598) #24	Slc46a3 (ENSMSIG00000023578) #25	Mtus2 (ENSMSIG00000023484) #26	Slc7a1 (ENSMSIG00000023421) #27	Ubl3 (ENSMSIG00000023402) #28	Katnal1 (ENSMSIG00000023377) #29	ENSMSIG00000023332 ##30	Uspl1 (ENSMSIG00000023285) #31	Alox5ap (ENSMSIG00000023243) #32	ENSMSIG00000023226	Medag (ENSMSIG00000023188) #33	Tex26 (ENSMSIG00000023128) #34	Wdr95 (ENSMSIG00000023065) #35
Ryukyu mouse	MODERN SPECIES	14	Cdk8 (MGP_CAROLIEiJ_G0028025)	Wasf3 (MGP_CAROLIEiJ_G0028026)	Gpr12 (MGP_CAROLIEiJ_G0028027) #9	Usp12 (MGP_CAROLIEiJ_G0028028) #10	Rpl21 (MGP_CAROLIEiJ_G0028029) #11	Rasl11a (MGP_CAROLIEiJ_G0028030) #12	Gtf3a (MGP_CAROLIEiJ_G0028031) #13	Mtif3 (MGP_CAROLIEiJ_G0028032) #14	Lnx2 (MGP_CAROLIEiJ_G0028033) #15	Polr1d (MGP_CAROLIEiJ_G0028034) #16	Gsx1 (MGP_CAROLIEiJ_G0028035) #17	Pdx1 (MGP_CAROLIEiJ_G0028036) #18	Cdx2 (MGP_CAROLIEiJ_G0028037) #19	Urad (MGP_CAROLIEiJ_G0028038) #20	Flt3 (MGP_CAROLIEiJ_G0028039) #21	Pan3 (MGP_CAROLIEiJ_G0028040) #22	Flt1 (MGP_CAROLIEiJ_G0028041) #23	Pomp (MGP_CAROLIEiJ_G0028042) #24	Slc46a3 (MGP_CAROLIEiJ_G0028043) #25	Mtus2 (MGP_CAROLIEiJ_G0028044) #26	Slc7a1 (MGP_CAROLIEiJ_G0028045) #27	Ubl3 (MGP_CAROLIEiJ_G0028046) #28	MGP_CAROLIEiJ_G0028047 #29	MGP_CAROLIEiJ_G0028048 #29	MGP_CAROLIEiJ_G0028049 ##30	Uspl1 (MGP_CAROLIEiJ_G0028050) #31	MGP_CAROLIEiJ_G0028051 #32	Medag (MGP_CAROLIEiJ_G0028052) #33	Tex26 (MGP_CAROLIEiJ_G0028053) #34	Wdr95 (MGP_CAROLIEiJ_G0028054) #35	Hsph1 (MGP_CAROLIEiJ_G0028055) #36