Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a #7	ENSGT00940000153284.a.h #9	ENSGT00950000182922.a.a.b.c.c.b #10	ENSGT00940000161208 #11	ENSGT00940000155647 #12	ENSGT00390000014424 #13	ENSGT00940000158381 #14	ENSGT00550000075160 #15	ENSGT00940000154361.A #16	ENSGT00940000162542 #17	ENSGT00940000161261 #18	ENSGT00390000002395	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #25	ENSGT00950000183096.a.a.c.b #26	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336 #34	ENSGT00390000018451 #35	ENSGT00390000009484 #36	ENSGT00940000162967 #37	ENSGT00940000159635
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a #7	ENSGT00940000153284.a.h #9	ENSGT00950000182922.a.a.b.c.c.b #10	ENSGT00940000161208 #11	ENSGT00940000155647 #12	ENSGT00390000014424 #13	ENSGT00940000158381 #14	ENSGT00550000075160 #15	ENSGT00940000154361.A #16	ENSGT00940000162542 #17	ENSGT00940000161261 #18	ENSGT00390000002395	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #25	ENSGT00950000183096.a.a.c.b #26	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336 #34	ENSGT00390000018451 #35	ENSGT00390000009484 #36	ENSGT00940000162967 #37	ENSGT00940000159635
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a #7	ENSGT00940000153284.a.h #9	ENSGT00950000182922.a.a.b.c.c.b #10	ENSGT00940000161208 #11	ENSGT00940000155647 #12	ENSGT00390000014424 #13	ENSGT00940000158381 #14	ENSGT00550000075160 #15	ENSGT00940000154361.A #16	ENSGT00940000162542 #17	ENSGT00940000161261 #18	ENSGT00390000002395	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #25	ENSGT00950000183096.a.a.c.b #26	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336 #34	ENSGT00390000018451 #35	ENSGT00390000009484 #36	ENSGT00940000162967 #37	ENSGT00940000159635
Steppe mouse	MODERN SPECIES	3364	Gpr12 (ENSMSIG00000024129) #7	ENSMSIG00000024119 #8	Usp12 (ENSMSIG00000024096) #9	ENSMSIG00000024049 #10	Rasl11a (ENSMSIG00000024039) #11	Gtf3a (ENSMSIG00000024026) #12	Mtif3 (ENSMSIG00000024005) #13	Lnx2 (ENSMSIG00000023999) #14	ENSMSIG00000023978 #15	Gsx1 (ENSMSIG00000023969) #16	Pdx1 (ENSMSIG00000023956) #17	Cdx2 (ENSMSIG00000023947) #18	ENSMSIG00000023941 #19	ENSMSIG00000023930 #20	Flt3 (ENSMSIG00000023851) #21	Pan3 (ENSMSIG00000023687) #22	Flt1 (ENSMSIG00000023642) #23	ENSMSIG00000023628 #24	Pomp (ENSMSIG00000023598) #25	Slc46a3 (ENSMSIG00000023578) #26	Mtus2 (ENSMSIG00000023484) #27	Slc7a1 (ENSMSIG00000023421) #28	Ubl3 (ENSMSIG00000023402) #29	Katnal1 (ENSMSIG00000023377) #30	ENSMSIG00000023332 #31	Uspl1 (ENSMSIG00000023285) #32	Alox5ap (ENSMSIG00000023243) #33	ENSMSIG00000023226 #34	Medag (ENSMSIG00000023188) #35	Tex26 (ENSMSIG00000023128) #36	Wdr95 (ENSMSIG00000023065) #37
spretus	MODERN SPECIES	14	Cdk8 (MGP_SPRETEiJ_G0029023)	Wasf3 (MGP_SPRETEiJ_G0029024)	Gpr12 (MGP_SPRETEiJ_G0029025) #7	Usp12 (MGP_SPRETEiJ_G0029026) #9	MGP_SPRETEiJ_G0029027 ##10	Rasl11a (MGP_SPRETEiJ_G0029028) #11	Gtf3a (MGP_SPRETEiJ_G0029029) #12	Mtif3 (MGP_SPRETEiJ_G0029030) #13	Lnx2 (MGP_SPRETEiJ_G0029031) #14	Polr1d (MGP_SPRETEiJ_G0029032) #15	Gsx1 (MGP_SPRETEiJ_G0029033) #16	Pdx1 (MGP_SPRETEiJ_G0029034) #17	Cdx2 (MGP_SPRETEiJ_G0029035) #18	Urad (MGP_SPRETEiJ_G0029036)	Flt3 (MGP_SPRETEiJ_G0029037) #21	Pan3 (MGP_SPRETEiJ_G0029038) #22	Flt1 (MGP_SPRETEiJ_G0029039) #23	Pomp (MGP_SPRETEiJ_G0029040) #25	Slc46a3 (MGP_SPRETEiJ_G0029041) #26	Mtus2 (MGP_SPRETEiJ_G0029042) #27	Slc7a1 (MGP_SPRETEiJ_G0029043) #28	Ubl3 (MGP_SPRETEiJ_G0029044) #29	MGP_SPRETEiJ_G0029045 #30	MGP_SPRETEiJ_G0029046 #30	MGP_SPRETEiJ_G0029047 ##31	Uspl1 (MGP_SPRETEiJ_G0029048) #32	Alox5ap (MGP_SPRETEiJ_G0029049) #33	Medag (MGP_SPRETEiJ_G0029050) #35	Tex26 (MGP_SPRETEiJ_G0029051) #36	Wdr95 (MGP_SPRETEiJ_G0029052) #37	Hsph1 (MGP_SPRETEiJ_G0029053)
Mouse	MODERN SPECIES	14	Gm3409 (ENSMUSG00000096664)	Gm3415 (ENSMUSG00000095557)	Gpr12 (ENSMUSG00000041468) #7	Usp12 (ENSMUSG00000029640) #9	Rpl21 (ENSMUSG00000041453) #10	Rasl11a (ENSMUSG00000029641) #11	Gtf3a (ENSMUSG00000016503) #12	Mtif3 (ENSMUSG00000016510) #13	Lnx2 (ENSMUSG00000016520) #14	Polr1d (ENSMUSG00000029642) #15	Gsx1 (ENSMUSG00000053129) #16	Pdx1 (ENSMUSG00000029644) #17	Cdx2 (ENSMUSG00000029646) #18	Urad (ENSMUSG00000075543)	Flt3 (ENSMUSG00000042817) #21	Pan3 (ENSMUSG00000029647) #22	Flt1 (ENSMUSG00000029648) #23	Pomp (ENSMUSG00000029649) #25	Slc46a3 (ENSMUSG00000029650) #26	Mtus2 (ENSMUSG00000029651) #27	Slc7a1 (ENSMUSG00000041313) #28	Ubl3 (ENSMUSG00000001687) #29	Katnal1 (ENSMUSG00000041298) #30	Hmgb1 (ENSMUSG00000066551) ##31	Uspl1 (ENSMUSG00000041264) #32	Alox5ap (ENSMUSG00000060063) #33	Medag (ENSMUSG00000029659) #35	Tex26 (ENSMUSG00000029660) #36	Wdr95 (ENSMUSG00000029658) #37	Hsph1 (ENSMUSG00000029657)	B3glct (ENSMUSG00000051950)
Ryukyu mouse	MODERN SPECIES	14	Cdk8 (MGP_CAROLIEiJ_G0028025)	Wasf3 (MGP_CAROLIEiJ_G0028026)	Gpr12 (MGP_CAROLIEiJ_G0028027) #7	Usp12 (MGP_CAROLIEiJ_G0028028) #9	Rpl21 (MGP_CAROLIEiJ_G0028029) #10	Rasl11a (MGP_CAROLIEiJ_G0028030) #11	Gtf3a (MGP_CAROLIEiJ_G0028031) #12	Mtif3 (MGP_CAROLIEiJ_G0028032) #13	Lnx2 (MGP_CAROLIEiJ_G0028033) #14	Polr1d (MGP_CAROLIEiJ_G0028034) #15	Gsx1 (MGP_CAROLIEiJ_G0028035) #16	Pdx1 (MGP_CAROLIEiJ_G0028036) #17	Cdx2 (MGP_CAROLIEiJ_G0028037) #18	Urad (MGP_CAROLIEiJ_G0028038)	Flt3 (MGP_CAROLIEiJ_G0028039) #21	Pan3 (MGP_CAROLIEiJ_G0028040) #22	Flt1 (MGP_CAROLIEiJ_G0028041) #23	Pomp (MGP_CAROLIEiJ_G0028042) #25	Slc46a3 (MGP_CAROLIEiJ_G0028043) #26	Mtus2 (MGP_CAROLIEiJ_G0028044) #27	Slc7a1 (MGP_CAROLIEiJ_G0028045) #28	Ubl3 (MGP_CAROLIEiJ_G0028046) #29	MGP_CAROLIEiJ_G0028047 #30	MGP_CAROLIEiJ_G0028048 #30	MGP_CAROLIEiJ_G0028049 ##31	Uspl1 (MGP_CAROLIEiJ_G0028050) #32	MGP_CAROLIEiJ_G0028051 #33	Medag (MGP_CAROLIEiJ_G0028052) #35	Tex26 (MGP_CAROLIEiJ_G0028053) #36	Wdr95 (MGP_CAROLIEiJ_G0028054) #37	Hsph1 (MGP_CAROLIEiJ_G0028055)