Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000155924.b #9	ENSGT00530000063604.B #10	ENSGT00940000154304.A #11	ENSGT00940000154304.B #12	ENSGT00940000161114 #13	ENSGT00660000095605 #14	ENSGT00940000161715	ENSGT00390000010047.b.m #15	ENSGT00940000163676	ENSGT00940000155601 #16	ENSGT00900000141021.a #17	ENSGT01100000263517.b.d.m.b.b #18	ENSGT00940000157639 #19	ENSGT00390000013003 #20	ENSGT00500000044895 #21	ENSGT00940000157458 #22	ENSGT00940000157906 #23	ENSGT00940000159504 #24	ENSGT00940000155130 #25	ENSGT00390000012166.p #26	ENSGT00430000032886 #27	ENSGT00390000012166.o #28	ENSGT00940000159228 #29	ENSGT00940000159902 #30	ENSGT01030000234614.B.b #31	ENSGT00390000005554 #32	ENSGT00950000183081.a.a.a #33	ENSGT00940000153838.b #34	ENSGT00950000182888.a.a.b #35	ENSGT00950000182951.B #36	ENSGT00940000155091
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000161173 #8	ENSGT00940000155924.b #9	ENSGT00530000063604.B #10	ENSGT00940000154304.A #11	ENSGT00940000154304.B #12	ENSGT00940000161114 #13	ENSGT00660000095605 #14	ENSGT00390000010047.b.m #15	ENSGT00940000163676	ENSGT00940000155601 #16	ENSGT00900000141021.a #17	ENSGT01100000263517.b.d.m.b.b #18	ENSGT00940000157639 #19	ENSGT00390000013003 #20	ENSGT00500000044895 #21	ENSGT00940000157458 #22	ENSGT00940000157906 #23	ENSGT00940000159504 #24	ENSGT00940000155130 #25	ENSGT00390000012166.p #26	ENSGT00430000032886 #27	ENSGT00390000012166.o #28	ENSGT00940000159228 #29	ENSGT00940000159902 #30	ENSGT01030000234614.B.b #31	ENSGT00390000005554 #32	ENSGT00950000183081.a.a.a #33	ENSGT00940000153838.b #34	ENSGT00950000182888.a.a.b #35	ENSGT00950000182951.B #36	ENSGT00940000154079.a #37
Guinea pig	MODERN SPECIES	12	LAMC1 (ENSCPOG00000008195) #7	SHCBP1L (ENSCPOG00000000091) #8	DHX9 (ENSCPOG00000040669) #9	NPL (ENSCPOG00000007050) #10	RGS8 (ENSCPOG00000038717) #11	RGS16 (ENSCPOG00000032414) #12	ENSCPOG00000025198 #13	RGSL1 (ENSCPOG00000009489) #14	GLUL (ENSCPOG00000031495) #15	CACNA1E (ENSCPOG00000014861) #16	ENSCPOG00000032885 #17	MR1 (ENSCPOG00000013519) #18	STX6 (ENSCPOG00000011554) #19	KIAA1614 (ENSCPOG00000011540) #20	XPR1 (ENSCPOG00000011532) #21	ACBD6 (ENSCPOG00000034322) #22	LHX4 (ENSCPOG00000002285) #23	QSOX1 (ENSCPOG00000002191) #24	ENSCPOG00000036974 #25	TOR1AIP1 (ENSCPOG00000035530) #26	ENSCPOG00000033080 #27	TOR1AIP2 (ENSCPOG00000038220) #28	FAM163A (ENSCPOG00000036422) #29	ENSCPOG00000032476 #30	NPHS2 (ENSCPOG00000006806) #31	ENSCPOG00000001513 #32	SOAT1 (ENSCPOG00000013170) #33	ABL2 (ENSCPOG00000013202) #34	TOR3A (ENSCPOG00000013197) #35	FAM20B (ENSCPOG00000038765) #36	RALGPS2 (ENSCPOG00000007821) #37
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000161173 #8	ENSGT00940000155924.b #9	ENSGT00530000063604.B #10	ENSGT00940000154304.A #11	ENSGT00940000154304.B #12	ENSGT00940000161114 #13	ENSGT00660000095605 #14	ENSGT00390000010047.b.m #15	ENSGT00940000163676	ENSGT00940000155601 #16	ENSGT00900000141021.a #17	ENSGT01100000263517.b.d.m.b.b #18	ENSGT00940000157639 #19	ENSGT00390000013003 #20	ENSGT00500000044895 #21	ENSGT00940000157458 #22	ENSGT00940000157906 #23	ENSGT00940000159504 #24	ENSGT00940000155130 #25	ENSGT00390000012166.p #26	ENSGT00430000032886 #27	ENSGT00390000012166.o #28	ENSGT00940000159228 #29	ENSGT00940000159902 #30	ENSGT01030000234614.B.b #31	ENSGT00390000005554 #32	ENSGT00950000183081.a.a.a #33	ENSGT00940000153838.b #34	ENSGT00950000182888.a.a.b #35	ENSGT00950000182951.B #36	ENSGT00940000155091
Degu	MODERN SPECIES	217		NPL (ENSODEG00000001997) #10	RGS8 (ENSODEG00000002140) #11	RGS16 (ENSODEG00000002207) #12	RNASEL (ENSODEG00000002238) #13	RGSL1 (ENSODEG00000002025) #14	ENSODEG00000002150	ENSODEG00000002267 ##15	CACNA1E (ENSODEG00000002539) #16	IER5 (ENSODEG00000002417) #17	MR1 (ENSODEG00000002434) #18	STX6 (ENSODEG00000002501) #19	KIAA1614 (ENSODEG00000002551) #20	XPR1 (ENSODEG00000002824) #21	ENSODEG00000002944	ACBD6 (ENSODEG00000002975) #22	LHX4 (ENSODEG00000002985) #23	QSOX1 (ENSODEG00000002996) #24	CEP350 (ENSODEG00000003067) #25	ENSODEG00000003348	TOR1AIP1 (ENSODEG00000003384) #26	ENSODEG00000018951 #27	TOR1AIP2 (ENSODEG00000003514) #28	FAM163A (ENSODEG00000003716) #29	ENSODEG00000018971	ENSODEG00000003740 #30	NPHS2 (ENSODEG00000003765) #31	ENSODEG00000002486	ENSODEG00000002497	ENSODEG00000018924	SOAT1 (ENSODEG00000002760) #33
Long-tailed chinchilla	MODERN SPECIES	113	LAMC1 (ENSCLAG00000013998) #7	SHCBP1L (ENSCLAG00000015878) #8	DHX9 (ENSCLAG00000010684) #9	NPL (ENSCLAG00000010358) #10	RGS8 (ENSCLAG00000010532) #11	RGS16 (ENSCLAG00000013133) #12	RNASEL (ENSCLAG00000011944) #13	RGSL1 (ENSCLAG00000011205) #14	ENSCLAG00000011071 #15	ZNF648 (ENSCLAG00000018093)	CACNA1E (ENSCLAG00000010910) #16	MR1 (ENSCLAG00000012660) #18	STX6 (ENSCLAG00000010621) #19	KIAA1614 (ENSCLAG00000011600) #20	XPR1 (ENSCLAG00000014911) #21	ACBD6 (ENSCLAG00000013121) #22	LHX4 (ENSCLAG00000014634) #23	ENSCLAG00000016805 #24	CEP350 (ENSCLAG00000012416) #25	TOR1AIP1 (ENSCLAG00000014927) #26	ENSCLAG00000017855 #27	TOR1AIP2 (ENSCLAG00000011876) #28	FAM163A (ENSCLAG00000010569) #29	TDRD5 (ENSCLAG00000012916) #30	NPHS2 (ENSCLAG00000009073) #31	AXDND1 (ENSCLAG00000012286) #32	SOAT1 (ENSCLAG00000014241) #33	ABL2 (ENSCLAG00000012580) #34	TOR3A (ENSCLAG00000008263) #35	FAM20B (ENSCLAG00000014271) #36	ANGPTL1 (ENSCLAG00000013625)
Naked mole-rat female	MODERN SPECIES	16	TDRD5 (ENSHGLG00000050879) #30	ENSHGLG00000037334	ENSHGLG00000036073	ENSHGLG00000035513	ENSHGLG00000008553	ENSHGLG00000007594 #15	ENSHGLG00000049029	ENSHGLG00000006782	ENSHGLG00000035020	CACNA1E (ENSHGLG00000007706) #16	IER5 (ENSHGLG00000034929) #17	MR1 (ENSHGLG00000009714) #18	STX6 (ENSHGLG00000008526) #19	KIAA1614 (ENSHGLG00000007239) #20	XPR1 (ENSHGLG00000003855) #21	ACBD6 (ENSHGLG00000044832) #22	ENSHGLG00000038918	LHX4 (ENSHGLG00000009524) #23	QSOX1 (ENSHGLG00000008148) #24	CEP350 (ENSHGLG00000003729) #25	ENSHGLG00000045632 #26	ENSHGLG00000034354 #27	ENSHGLG00000050289 #28	ENSHGLG00000039412 #29	ENSHGLG00000004930 #13	ENSHGLG00000034194	ENSHGLG00000004562 #12	RGS8 (ENSHGLG00000032497) #11	ENSHGLG00000037076	ENSHGLG00000010481 #10	DHX9 (ENSHGLG00000005769) #9