Gnathostomata	ANCESTRAL SPECIES																	ENSGT00730000111212 #22
Euteleostomi	ANCESTRAL SPECIES	29	ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.b ##16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.b ##16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35
Amniota	ANCESTRAL SPECIES	5	ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29
Mammalia	ANCESTRAL SPECIES	36	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326
Theria	ANCESTRAL SPECIES		ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661.b	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a
Eutheria	ANCESTRAL SPECIES	1	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Glires	ANCESTRAL SPECIES	18	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Rodentia	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Muroidea	ANCESTRAL SPECIES	8	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Cricetinae	ANCESTRAL SPECIES	23	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Chinese hamster chok1gshd	MODERN SPECIES	54	Smim30 (ENSCGRG00001006732) #7	Ppp1r3a (ENSCGRG00001019903) #8	Foxp2 (ENSCGRG00001011096) #9	Mdfic (ENSCGRG00001017688) #10	Tfec (ENSCGRG00001017234) #11	ENSCGRG00001023123 #12	Cav2 (ENSCGRG00001020610) #13	Cav1 (ENSCGRG00001019680) #14	Met (ENSCGRG00001011551) #15	Capza2 (ENSCGRG00001022803) #16	St7 (ENSCGRG00001018752) #17	Wnt2 (ENSCGRG00001005484) #18	Asz1 (ENSCGRG00001020481) #19	Cftr (ENSCGRG00001006106) #20	Cttnbp2 (ENSCGRG00001010648) #21	Lsm8 (ENSCGRG00001000450) #22	Ankrd7 (ENSCGRG00001022051) #23	ENSCGRG00001021813 #24	ENSCGRG00001021329 #25	Kcnd2 (ENSCGRG00001013210) #26	Tspan12 (ENSCGRG00001012145) #27	Ing3 (ENSCGRG00001012381) #28	Cped1 (ENSCGRG00001009705) #29	Wnt16 (ENSCGRG00001022981) #30	Fam3c (ENSCGRG00001019403) #31	Ptprz1 (ENSCGRG00001020740) #32	Aass (ENSCGRG00001014114) #33	Fezf1 (ENSCGRG00001018145) #34	Cadps2 (ENSCGRG00001009309) #35	Rnf133 (ENSCGRG00001011407) #36	ENSCGRG00001014291 #37
Golden Hamster	DUPLICATION
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	852					Aoah (ENSMAUG00000014042)	Or2p2 (ENSMAUG00000017422)	ENSMAUG00000017480	Or2ad1 (ENSMAUG00000017298)	Trim27 (ENSMAUG00000011588)	ENSMAUG00000012725	Gpx6 (ENSMAUG00000014546)	Zkscan3 (ENSMAUG00000009785)	Zscan26 (ENSMAUG00000016419)	Nkapl (ENSMAUG00000011736)	Zkscan8 (ENSMAUG00000019014)	ENSMAUG00000015356 #22	Or2w6 (ENSMAUG00000017576)	ENSMAUG00000017623	ENSMAUG00000017587	ENSMAUG00000017734	ENSMAUG00000014301	ENSMAUG00000016752	ENSMAUG00000017828	ENSMAUG00000017394	ENSMAUG00000012078	Zfp184 (ENSMAUG00000002652)	ENSMAUG00000014749	Prss16 (ENSMAUG00000018390)	H2ac12 (ENSMAUG00000017934)	ENSMAUG00000017554	ENSMAUG00000017348
Golden Hamster	MODERN SPECIES	706			Gpt2 (ENSMAUG00000017417)	Dnaja2 (ENSMAUG00000013341)	ENSMAUG00000008382	Neto2 (ENSMAUG00000005646)	Itfg1 (ENSMAUG00000011749)	Phkb (ENSMAUG00000016799)	Abcc12 (ENSMAUG00000005078)	ENSMAUG00000001567	ENSMAUG00000017496	Siah1a (ENSMAUG00000001370)	N4bp1 (ENSMAUG00000019066)	Cbln1 (ENSMAUG00000020791)	4933402J07Rik (ENSMAUG00000017355)	ENSMAUG00000015721 #22	ENSMAUG00000019410	Zfp423 (ENSMAUG00000015448)	ENSMAUG00000013750	Cnep1r1 (ENSMAUG00000012481)	Heatr3 (ENSMAUG00000020748)	Tent4b (ENSMAUG00000018042)	Adcy7 (ENSMAUG00000005638)	Brd7 (ENSMAUG00000000695)	Nkd1 (ENSMAUG00000000515)	Snx20 (ENSMAUG00000020254)	Nod2 (ENSMAUG00000004325)	Cyld (ENSMAUG00000001344)	ENSMAUG00000018753	Sall1 (ENSMAUG00000019093)	Tox3 (ENSMAUG00000000550)
Golden Hamster	MODERN SPECIES	696																Lsm8 (ENSMAUG00000020287) #22	Kcnd2 (ENSMAUG00000014403) #26	Tspan12 (ENSMAUG00000013716) #27	Ing3 (ENSMAUG00000001366) #28	Cped1 (ENSMAUG00000012676) #29	Wnt16 (ENSMAUG00000015173) #30	Fam3c (ENSMAUG00000018611) #31	ENSMAUG00000002182	Ptprz1 (ENSMAUG00000013366) #32	Aass (ENSMAUG00000021228) #33	Fezf1 (ENSMAUG00000014725) #34	Cadps2 (ENSMAUG00000014481) #35	Rnf148 (ENSMAUG00000002390)	Slc13a1 (ENSMAUG00000021116)	Iqub (ENSMAUG00000010910)	ENSMAUG00000008323
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Prairie vole	MODERN SPECIES	350	Mdfic (ENSMOCG00000014159) #10	ENSMOCG00000018404	ENSMOCG00000002194	Tfec (ENSMOCG00000021582) #11	ENSMOCG00000011236 #12	Cav2 (ENSMOCG00000015582) #13	Cav1 (ENSMOCG00000019224) #14	Met (ENSMOCG00000006344) #15	Capza2 (ENSMOCG00000017352) #16	St7 (ENSMOCG00000016312) #17	Wnt2 (ENSMOCG00000022808) #18	Asz1 (ENSMOCG00000001767) #19	Cftr (ENSMOCG00000007371) #20	Cttnbp2 (ENSMOCG00000010478) #21	ENSMOCG00000018450	Lsm8 (ENSMOCG00000001688) #22	Kcnd2 (ENSMOCG00000022409) #26	Tspan12 (ENSMOCG00000018964) #27	Ing3 (ENSMOCG00000015011) #28	Cped1 (ENSMOCG00000013716) #29	Wnt16 (ENSMOCG00000021643) #30	Fam3c (ENSMOCG00000005307) #31	Ptprz1 (ENSMOCG00000007634) #32	Aass (ENSMOCG00000015947) #33	Usp26 (ENSMOCG00000011350)	Hs6st2 (ENSMOCG00000014810)	Mbnl3 (ENSMOCG00000011470)	Rap2c (ENSMOCG00000007198)	Frmd7 (ENSMOCG00000017123)	Stk26 (ENSMOCG00000012674)
Northern American deer mouse	MODERN SPECIES	16	Ppp1r3a (ENSPEMG00000011327) #8	Foxp2 (ENSPEMG00000017097) #9	Mdfic (ENSPEMG00000000955) #10	Tfec (ENSPEMG00000016053) #11	ENSPEMG00000002837 #12	ENSPEMG00000011977	Cav2 (ENSPEMG00000024329) #13	Cav1 (ENSPEMG00000024904) #14	Met (ENSPEMG00000021204) #15	Capza2 (ENSPEMG00000023836) #16	St7 (ENSPEMG00000006510) #17	Wnt2 (ENSPEMG00000024059) #18	Asz1 (ENSPEMG00000005011) #19	Cftr (ENSPEMG00000008730) #20	Cttnbp2 (ENSPEMG00000006365) #21	Lsm8 (ENSPEMG00000009153) #22	Ankrd7 (ENSPEMG00000015569) #23	ENSPEMG00000026145	ENSPEMG00000025502	ENSPEMG00000025522	ENSPEMG00000027299	Kcnd2 (ENSPEMG00000012871) #26	Tspan12 (ENSPEMG00000016235) #27	Ing3 (ENSPEMG00000021561) #28	Cped1 (ENSPEMG00000024278) #29	Wnt16 (ENSPEMG00000024607) #30	ENSPEMG00000022248 #31	Ptprz1 (ENSPEMG00000014955) #32	Aass (ENSPEMG00000008591) #33	Fezf1 (ENSPEMG00000010541) #34	Cadps2 (ENSPEMG00000018807) #35
Murinae	ANCESTRAL SPECIES	4	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.c #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Rat	MODERN SPECIES	14	Mdfic (ENSRNOG00000053787) #10	RGD1562178 (ENSRNOG00000052702)	Tfec (ENSRNOG00000061595) #11	Tes (ENSRNOG00000051952) #12	Cav2 (ENSRNOG00000057713) #13	Cav1 (ENSRNOG00000056836) #14	Met (ENSRNOG00000052745) #15	Capza2 (ENSRNOG00000056207) #16	ST7 (ENSRNOG00000056243) #17	AC123138.1 (ENSRNOG00000012822)	Wnt2 (ENSRNOG00000051905) #18	Asz1 (ENSRNOG00000060343) #19	ENSRNOG00000067965	Cftr (ENSRNOG00000055103) #20	Cttnbp2 (ENSRNOG00000061845) #21	Lsm8 (ENSRNOG00000070946) #22	Ankrd7 (ENSRNOG00000055481)	LOC685171 (ENSRNOG00000058543)	Kcnd2 (ENSRNOG00000067416) #26	Tspan12 (ENSRNOG00000059016) #27	ENSRNOG00000064820	Ing3 (ENSRNOG00000005496) #28	Cped1 (ENSRNOG00000021840) #29	Wnt16 (ENSRNOG00000005781) #30	Fam3c (ENSRNOG00000060349) #31	ENSRNOG00000063098	Ptprz1 (ENSRNOG00000006030) #32	Aass (ENSRNOG00000039494) #33	AABR07025928.1 (ENSRNOG00000056660)	ENSRNOG00000068406	Fezf1 (ENSRNOG00000007608) #34
Mus	ANCESTRAL SPECIES	20	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.c #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Shrew mouse	MODERN SPECIES	11	Smim30 (MGP_PahariEiJ_G0021866) #7	Ppp1r3a (MGP_PahariEiJ_G0021867) #8	Foxp2 (MGP_PahariEiJ_G0021868) #9	MGP_PahariEiJ_G0021869 #10	Tfec (MGP_PahariEiJ_G0021870) #11	Tes (MGP_PahariEiJ_G0021871) #12	Cav2 (MGP_PahariEiJ_G0021872) #13	Cav1 (MGP_PahariEiJ_G0021873) #14	Met (MGP_PahariEiJ_G0021874) #15	Capza2 (MGP_PahariEiJ_G0021875) #16	St7 (MGP_PahariEiJ_G0021876) #17	Wnt2 (MGP_PahariEiJ_G0021877) #18	Asz1 (MGP_PahariEiJ_G0021878) #19	Cftr (MGP_PahariEiJ_G0021879) #20	Cttnbp2 (MGP_PahariEiJ_G0021880) #21	MGP_PahariEiJ_G0021881 #22	Ankrd7 (MGP_PahariEiJ_G0021882) #23	Kcnd2 (MGP_PahariEiJ_G0021883) #26	Tspan12 (MGP_PahariEiJ_G0021884) #27	Ing3 (MGP_PahariEiJ_G0021885) #28	Cped1 (MGP_PahariEiJ_G0021886) #29	Wnt16 (MGP_PahariEiJ_G0021887) #30	Fam3c (MGP_PahariEiJ_G0021888) #31	Ptprz1 (MGP_PahariEiJ_G0021889) #32	Aass (MGP_PahariEiJ_G0021890) #33	Fezf1 (MGP_PahariEiJ_G0021891) #34	Cadps2 (MGP_PahariEiJ_G0021892) #35	Rnf133 (MGP_PahariEiJ_G0021893) #36	Rnf148 (MGP_PahariEiJ_G0021894)	Tas2r118 (MGP_PahariEiJ_G0021895)	Slc13a1 (MGP_PahariEiJ_G0021896)
Mus_A	ANCESTRAL SPECIES	7	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.c #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Ryukyu mouse	MODERN SPECIES	15	Smim30 (MGP_CAROLIEiJ_G0028110) #7	Ppp1r3a (MGP_CAROLIEiJ_G0028111) #8	Foxp2 (MGP_CAROLIEiJ_G0028112) #9	MGP_CAROLIEiJ_G0028113 #10	Tfec (MGP_CAROLIEiJ_G0028114) #11	Tes (MGP_CAROLIEiJ_G0028115) #12	Cav2 (MGP_CAROLIEiJ_G0028116) #13	Cav1 (MGP_CAROLIEiJ_G0028117) #14	Met (MGP_CAROLIEiJ_G0028118) #15	Capza2 (MGP_CAROLIEiJ_G0028119) #16	St7 (MGP_CAROLIEiJ_G0028120) #17	Wnt2 (MGP_CAROLIEiJ_G0028121) #18	Asz1 (MGP_CAROLIEiJ_G0028122) #19	Cftr (MGP_CAROLIEiJ_G0028123) #20	Cttnbp2 (MGP_CAROLIEiJ_G0028124) #21	Lsm8 (MGP_CAROLIEiJ_G0028125) #22	Ankrd7 (MGP_CAROLIEiJ_G0028126) #23	Kcnd2 (MGP_CAROLIEiJ_G0028127) #26	Tspan12 (MGP_CAROLIEiJ_G0028128) #27	Ing3 (MGP_CAROLIEiJ_G0028129) #28	Cped1 (MGP_CAROLIEiJ_G0028130) #29	Wnt16 (MGP_CAROLIEiJ_G0028131) #30	Fam3c (MGP_CAROLIEiJ_G0028132) #31	Ptprz1 (MGP_CAROLIEiJ_G0028133) #32	Aass (MGP_CAROLIEiJ_G0028134) #33	Fezf1 (MGP_CAROLIEiJ_G0028135) #34	Cadps2 (MGP_CAROLIEiJ_G0028136) #35	Rnf133 (MGP_CAROLIEiJ_G0028137) #36	Rnf148 (MGP_CAROLIEiJ_G0028138)	Tas2r118 (MGP_CAROLIEiJ_G0028139)	Slc13a1 (MGP_CAROLIEiJ_G0028140)
Mus_B	ANCESTRAL SPECIES	20	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.c #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Mouse	MODERN SPECIES	15	Smim30 (ENSMUSG00000052419) #7	Ppp1r3a (ENSMUSG00000042717) #8	Foxp2 (ENSMUSG00000029563) #9	Mdfic (ENSMUSG00000041390) #10	Tfec (ENSMUSG00000029553) #11	Tes (ENSMUSG00000029552) #12	Cav2 (ENSMUSG00000000058) #13	Cav1 (ENSMUSG00000007655) #14	Met (ENSMUSG00000009376) #15	Capza2 (ENSMUSG00000015733) #16	St7 (ENSMUSG00000029534) #17	Wnt2 (ENSMUSG00000010797) #18	Asz1 (ENSMUSG00000010796) #19	Cftr (ENSMUSG00000041301) #20	Cttnbp2 (ENSMUSG00000000416) #21	Lsm8 (ENSMUSG00000044155) #22	Ankrd7 (ENSMUSG00000029517) #23	Kcnd2 (ENSMUSG00000060882) #26	Tspan12 (ENSMUSG00000029669) #27	Ing3 (ENSMUSG00000029670) #28	Cped1 (ENSMUSG00000062980) #29	Wnt16 (ENSMUSG00000029671) #30	Fam3c (ENSMUSG00000029672) #31	Ptprz1 (ENSMUSG00000068748) #32	Aass (ENSMUSG00000029695) #33	Fezf1 (ENSMUSG00000029697) #34	Cadps2 (ENSMUSG00000017978) #35	Rnf133 (ENSMUSG00000051956) #36	Rnf148 (ENSMUSG00000078179)	Tas2r118 (ENSMUSG00000043865)	Slc13a1 (ENSMUSG00000029700)
Mus_C	ANCESTRAL SPECIES	19	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.c #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Steppe mouse	MODERN SPECIES	3300														Cttnbp2 (ENSMSIG00000019587) #21	ENSMSIG00000019569	ENSMSIG00000019550 #22	Ankrd7 (ENSMSIG00000019528) #23	ENSMSIG00000019517	ENSMSIG00000019508	ENSMSIG00000019486	ENSMSIG00000019470	Kcnd2 (ENSMSIG00000019456) #26	Tspan12 (ENSMSIG00000019433) #27	Ing3 (ENSMSIG00000019386) #28	Cped1 (ENSMSIG00000019364) #29	Wnt16 (ENSMSIG00000019307) #30	Fam3c (ENSMSIG00000019205) #31	ENSMSIG00000019192	Ptprz1 (ENSMSIG00000018983) #32
spretus	MODERN SPECIES	15	Smim30 (MGP_SPRETEiJ_G0029110) #7	Ppp1r3a (MGP_SPRETEiJ_G0029111) #8	Foxp2 (MGP_SPRETEiJ_G0029112) #9	MGP_SPRETEiJ_G0029113 #10	Tfec (MGP_SPRETEiJ_G0029114) #11	Tes (MGP_SPRETEiJ_G0029115) #12	Cav2 (MGP_SPRETEiJ_G0029116) #13	Cav1 (MGP_SPRETEiJ_G0029117) #14	Met (MGP_SPRETEiJ_G0029118) #15	Capza2 (MGP_SPRETEiJ_G0029119) #16	St7 (MGP_SPRETEiJ_G0029120) #17	Wnt2 (MGP_SPRETEiJ_G0029121) #18	Asz1 (MGP_SPRETEiJ_G0029122) #19	Cftr (MGP_SPRETEiJ_G0029123) #20	Cttnbp2 (MGP_SPRETEiJ_G0029124) #21	Lsm8 (MGP_SPRETEiJ_G0029125) #22	Ankrd7 (MGP_SPRETEiJ_G0029126) #23	Kcnd2 (MGP_SPRETEiJ_G0029127) #26	Tspan12 (MGP_SPRETEiJ_G0029128) #27	Ing3 (MGP_SPRETEiJ_G0029129) #28	Cped1 (MGP_SPRETEiJ_G0029130) #29	Wnt16 (MGP_SPRETEiJ_G0029131) #30	Fam3c (MGP_SPRETEiJ_G0029132) #31	Ptprz1 (MGP_SPRETEiJ_G0029133) #32	Aass (MGP_SPRETEiJ_G0029134) #33	Fezf1 (MGP_SPRETEiJ_G0029135) #34	Cadps2 (MGP_SPRETEiJ_G0029136) #35	Rnf133 (MGP_SPRETEiJ_G0029137) #36	Rnf148 (MGP_SPRETEiJ_G0029138)	Tas2r118 (MGP_SPRETEiJ_G0029139)	Slc13a1 (MGP_SPRETEiJ_G0029140)
Upper Galilee mountains blind mole rat	MODERN SPECIES	433				Tfec (ENSNGAG00000014386) #11	ENSNGAG00000019096	ENSNGAG00000016766 #12	Cav2 (ENSNGAG00000015969) #13	Cav1 (ENSNGAG00000019636) #14	Met (ENSNGAG00000014046) #15	Capza2 (ENSNGAG00000001281) #16	St7 (ENSNGAG00000016185) #17	Wnt2 (ENSNGAG00000001319) #18	Asz1 (ENSNGAG00000019679) #19	Cftr (ENSNGAG00000012834) #20	Cttnbp2 (ENSNGAG00000000754) #21	Lsm8 (ENSNGAG00000016554) #22
Lesser Egyptian jerboa	MODERN SPECIES	67	Mdfic (ENSJJAG00000012683) #10	ENSJJAG00000012867	Tfec (ENSJJAG00000015649) #11	ENSJJAG00000019082 #12	Cav2 (ENSJJAG00000020789) #13	Cav1 (ENSJJAG00000021423) #14	ENSJJAG00000000187	Met (ENSJJAG00000012125) #15	ENSJJAG00000021128 #16	St7 (ENSJJAG00000004440) #17	Wnt2 (ENSJJAG00000017203) #18	Asz1 (ENSJJAG00000022495) #19	ENSJJAG00000022583 #20	Cttnbp2 (ENSJJAG00000013148) #21	ENSJJAG00000003447	Lsm8 (ENSJJAG00000009031) #22	ENSJJAG00000011628	ENSJJAG00000016745	ENSJJAG00000019540	Kcnd2 (ENSJJAG00000000160) #26	Tspan12 (ENSJJAG00000006214) #27	Ing3 (ENSJJAG00000007662) #28	Cped1 (ENSJJAG00000023207) #29	ENSJJAG00000013375	Wnt16 (ENSJJAG00000016207) #30	Fam3c (ENSJJAG00000019764) #31	ENSJJAG00000020378	ENSJJAG00000018547	Ptprz1 (ENSJJAG00000014324) #32	Aass (ENSJJAG00000003015) #33	Fezf1 (ENSJJAG00000014803) #34
Kangaroo rat	MODERN SPECIES	367	Foxp2 (ENSDORG00000007040) #9	Mdfic (ENSDORG00000001488) #10	Tfec (ENSDORG00000004403) #11	ENSDORG00000029823	ENSDORG00000016725 #12	Cav2 (ENSDORG00000023298) #13	Cav1 (ENSDORG00000026258) #14	Met (ENSDORG00000002178) #15	Capza2 (ENSDORG00000016226) #16	St7 (ENSDORG00000016230) #17	Wnt2 (ENSDORG00000016233) #18	Asz1 (ENSDORG00000007590) #19	Cftr (ENSDORG00000005421) #20	ENSDORG00000023544	Cttnbp2 (ENSDORG00000005026) #21	Lsm8 (ENSDORG00000027868) #22	Ankrd7 (ENSDORG00000002700) #23	ENSDORG00000028967	Kcnd2 (ENSDORG00000003100) #26	Tspan12 (ENSDORG00000003102) #27	Ing3 (ENSDORG00000014497) #28	Cped1 (ENSDORG00000014498) #29	Wnt16 (ENSDORG00000014501) #30	Fam3c (ENSDORG00000014503) #31	Ptprz1 (ENSDORG00000010123) #32	Aass (ENSDORG00000010129) #33	Fezf1 (ENSDORG00000027250) #34	Rnf133 (ENSDORG00000025983) #36	Cadps2 (ENSDORG00000016250) #35	Slc13a1 (ENSDORG00000000630)	ENSDORG00000030217
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00840000131243	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619.l #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000042544	ENSHGLG00000035433	CAV2 (ENSHGLG00000050485) #13	ENSHGLG00000042630 #14	MET (ENSHGLG00000002836) #15	ENSHGLG00000031932	ENSHGLG00000042742 #16	ENSHGLG00000002784 #16	ST7 (ENSHGLG00000002466) #17	ENSHGLG00000003310	WNT2 (ENSHGLG00000036817) #18	ASZ1 (ENSHGLG00000002226) #19	ENSHGLG00000041588	ENSHGLG00000002151 #20	ENSHGLG00000037153	NAA38 (ENSHGLG00000043821) #22	ENSHGLG00000038825	ENSHGLG00000006757	ENSHGLG00000010919	ENSHGLG00000010555 #26	TSPAN12 (ENSHGLG00000009931) #27	ING3 (ENSHGLG00000008632) #28	CPED1 (ENSHGLG00000007984) #29	WNT16 (ENSHGLG00000040512) #30	ENSHGLG00000019063 #31	PTPRZ1 (ENSHGLG00000007675) #32	AASS (ENSHGLG00000006193) #33	FEZF1 (ENSHGLG00000006102) #34	CADPS2 (ENSHGLG00000017751) #35	RNF148 (ENSHGLG00000033439)	TAS2R16 (ENSHGLG00000044095)
Naked mole-rat female	MODERN SPECIES	4	COL17A1 (ENSHGLG00000003598)	ENSHGLG00000033849	CFAP43 (ENSHGLG00000035856)	GSTO1 (ENSHGLG00000002485)	GSTO2 (ENSHGLG00000049945)	ITPRIP (ENSHGLG00000046163)	CFAP58 (ENSHGLG00000002793)	SORCS3 (ENSHGLG00000001754)	ENSHGLG00000039825	SORCS1 (ENSHGLG00000002729)	ENSHGLG00000039801	ENSHGLG00000010059	XPNPEP1 (ENSHGLG00000013820)	ENSHGLG00000010854	ENSHGLG00000049850	ENSHGLG00000044804 #22	ENSHGLG00000033270	MXI1 (ENSHGLG00000037614)	SMNDC1 (ENSHGLG00000013390)	DUSP5 (ENSHGLG00000012607)	ENSHGLG00000045441	SMC3 (ENSHGLG00000014422)	ENSHGLG00000036688	RBM20 (ENSHGLG00000013206)	PDCD4 (ENSHGLG00000010690)	BBIP1 (ENSHGLG00000010067)	ENSHGLG00000010758	ADRA2A (ENSHGLG00000043876)	ENSHGLG00000038445	GPAM (ENSHGLG00000011966)	TECTB (ENSHGLG00000012176)
Naked mole-rat female	MODERN SPECIES	11	IL17RE (ENSHGLG00000013446)	IL17RC (ENSHGLG00000010789)	CRELD1 (ENSHGLG00000019547)	ENSHGLG00000018322	EMC3 (ENSHGLG00000018335)	FANCD2 (ENSHGLG00000016165)	FANCD2OS (ENSHGLG00000021223)	ENSHGLG00000035278	ENSHGLG00000007041	SEC13 (ENSHGLG00000016676)	ENSHGLG00000033106	GHRL (ENSHGLG00000016347)	TATDN2 (ENSHGLG00000014225)	ENSHGLG00000014561	ENSHGLG00000039395	ENSHGLG00000019782 #22	ENSHGLG00000048266	ENSHGLG00000050768	TTC6 (ENSHGLG00000000647)	ENSHGLG00000019925	SSTR1 (ENSHGLG00000046762)	ENSHGLG00000033056	ENSHGLG00000003651	ENSHGLG00000003857	ENSHGLG00000047469	ENSHGLG00000045717	ENSHGLG00000004097	ENSHGLG00000004530	ENSHGLG00000004890	ENSHGLG00000005276	ENSHGLG00000005003
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00840000131243	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619.l #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00890000139436.B	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	289							ENSODEG00000000599	ENSODEG00000018600	ENSODEG00000000574	ENSODEG00000000547	ENSODEG00000000513	ISL1 (ENSODEG00000000484)	ENSODEG00000018570	ENSODEG00000000470	ENSODEG00000000441	ENSODEG00000000418 #22
Degu	MODERN SPECIES	525																ENSODEG00000000882 #22
Degu	MODERN SPECIES	139														ENSODEG00000016011	ENSODEG00000020301	ENSODEG00000020290 #22	ENSODEG00000016560	SPATA22 (ENSODEG00000016463)	ASPA (ENSODEG00000017618)	TRPV3 (ENSODEG00000016429)	TRPV1 (ENSODEG00000016421)	SHPK (ENSODEG00000016191)	CTNS (ENSODEG00000016471)	ENSODEG00000016245	EMC6 (ENSODEG00000016227)	P2RX5 (ENSODEG00000016335)	ITGAE (ENSODEG00000016419)	HASPIN (ENSODEG00000016330)	NCBP3 (ENSODEG00000016617)	CAMKK1 (ENSODEG00000016518)	P2RX1 (ENSODEG00000016566)
Long-tailed chinchilla	MODERN SPECIES	139	GPR85 (ENSCLAG00000004007)	SMIM30 (ENSCLAG00000004060) #7	PPP1R3A (ENSCLAG00000004128) #8	FOXP2 (ENSCLAG00000004387) #9	MDFIC (ENSCLAG00000005069) #10	TFEC (ENSCLAG00000005114) #11	TES (ENSCLAG00000005324) #12	CAV1 (ENSCLAG00000005371) #14	MET (ENSCLAG00000005456) #15	CAPZA2 (ENSCLAG00000005899) #16	ST7 (ENSCLAG00000006207) #17	WNT2 (ENSCLAG00000003334) #18	ASZ1 (ENSCLAG00000003377) #19	CFTR (ENSCLAG00000003484) #20	CTTNBP2 (ENSCLAG00000003619) #21	LSM8 (ENSCLAG00000003726) #22
Guinea pig	MODERN SPECIES	11	SMIM30 (ENSCPOG00000033718) #7	PPP1R3A (ENSCPOG00000012124) #8	FOXP2 (ENSCPOG00000000938) #9	MDFIC (ENSCPOG00000034814) #10	TFEC (ENSCPOG00000012369) #11	TES (ENSCPOG00000008823) #12	ENSCPOG00000031628	CAV1 (ENSCPOG00000002524) #14	MET (ENSCPOG00000013525) #15	CAPZA2 (ENSCPOG00000007677) #16	ST7 (ENSCPOG00000015621) #17	WNT2 (ENSCPOG00000033615) #18	ASZ1 (ENSCPOG00000009750) #19	CFTR (ENSCPOG00000012767) #20	CTTNBP2 (ENSCPOG00000004194) #21	LSM8 (ENSCPOG00000035673) #22	KCND2 (ENSCPOG00000011847) #26	TSPAN12 (ENSCPOG00000011851) #27	ING3 (ENSCPOG00000023225) #28	CPED1 (ENSCPOG00000007693) #29	WNT16 (ENSCPOG00000005635) #30	FAM3C (ENSCPOG00000005639) #31	PTPRZ1 (ENSCPOG00000039416) #32	AASS (ENSCPOG00000007522) #33	FEZF1 (ENSCPOG00000013096) #34	CADPS2 (ENSCPOG00000005875) #35	RNF133 (ENSCPOG00000035136) #36	TAS2R16 (ENSCPOG00000007419)	SLC13A1 (ENSCPOG00000006440)	IQUB (ENSCPOG00000006286)	NDUFA5 (ENSCPOG00000030629)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00940000182222	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	35	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.y #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Marmotini_b	ANCESTRAL SPECIES	193	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.y #22	ENSGT00940000161777.b #23
Squirrel	MODERN SPECIES	189	SMIM30 (ENSSTOG00000028596) #7	PPP1R3A (ENSSTOG00000026781) #8	FOXP2 (ENSSTOG00000008964) #9	MDFIC (ENSSTOG00000014533) #10	TFEC (ENSSTOG00000001224) #11	TES (ENSSTOG00000025936) #12	CAV2 (ENSSTOG00000021668) #13	CAV1 (ENSSTOG00000029133) #14	MET (ENSSTOG00000029241) #15	CAPZA2 (ENSSTOG00000024828) #16	ST7 (ENSSTOG00000005659) #17	WNT2 (ENSSTOG00000005674) #18	ASZ1 (ENSSTOG00000005688) #19	ENSSTOG00000005707 #20	CTTNBP2 (ENSSTOG00000023371) #21	ENSSTOG00000009039 #22
Arctic ground squirrel	MODERN SPECIES	461											ST7 (ENSUPAG00010010994) #17	WNT2 (ENSUPAG00010011934) #18	ASZ1 (ENSUPAG00010011943) #19	ENSUPAG00010011963 #20	CTTNBP2 (ENSUPAG00010011972) #21	ENSUPAG00010012020 #22	ENSUPAG00010012025 #23
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000159918.a.b	ENSGT00910000144115.a	ENSGT00940000153544.a.h	ENSGT00390000007975.b	ENSGT00960000190984	ENSGT00940000162211	ENSGT00390000001176	ENSGT00940000160828	ENSGT00940000155056	ENSGT00940000159584	ENSGT00940000155325	ENSGT01100000263544.c.a.b.a	ENSGT00940000155264	ENSGT00990000203541.a.a.b	ENSGT00390000012644	ENSGT00730000111212.z #22	ENSGT00390000011494	ENSGT00390000003856	ENSGT00940000158726	ENSGT00940000158771	ENSGT00950000182956.b.b.b	ENSGT00390000008767.a.a.a.b	ENSGT00390000000705	ENSGT00940000156676	ENSGT00950000183017.b.b.a.b	ENSGT00940000160911	ENSGT00940000153185.a.a.b	ENSGT00960000190885	ENSGT00940000161869	ENSGT00940000155806	ENSGT00390000013228.e.a
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00910000144115.a	ENSGT00940000153544.a.h	ENSGT00390000007975.b	ENSGT00950000185279	ENSGT00960000190984	ENSGT00940000162211	ENSGT00390000001176	ENSGT00940000160828	ENSGT00940000155056	ENSGT00940000159584	ENSGT00940000155325	ENSGT01100000263544.c.a.b.a	ENSGT00940000155264	ENSGT00990000203541.a.a.b	ENSGT00390000012644	ENSGT00730000111212.z #22	ENSGT00390000011494	ENSGT00390000003856	ENSGT00940000158726	ENSGT00940000158771	ENSGT00950000182956.b.b.b	ENSGT00390000008767.a.a.a.b	ENSGT00390000000705	ENSGT00940000156676	ENSGT00950000183017.b.b.a.b	ENSGT00940000160911	ENSGT00940000153185.a.a.b	ENSGT00960000190885	ENSGT00940000161869	ENSGT00940000155806	ENSGT00390000013228.e.a
Squirrel	MODERN SPECIES	76	ENSSTOG00000025407	KCTD20 (ENSSTOG00000011974)	ENSSTOG00000031664	ENSSTOG00000030608	ETV7 (ENSSTOG00000027253)	BNIP5 (ENSSTOG00000007388)	PNPLA1 (ENSSTOG00000026201)	BRPF3 (ENSSTOG00000006742)	ENSSTOG00000033183	MAPK13 (ENSSTOG00000025085)	MAPK14 (ENSSTOG00000020831)	SLC26A8 (ENSSTOG00000008184)	SRPK1 (ENSSTOG00000013724)	LHFPL5 (ENSSTOG00000013721)	Clps (ENSSTOG00000027903)	ENSSTOG00000034801 #22	CLPSL2 (ENSSTOG00000006012)	ARMC12 (ENSSTOG00000013713)	FKBP5 (ENSSTOG00000023914)	TULP1 (ENSSTOG00000015488)	TEAD3 (ENSSTOG00000024296)	ENSSTOG00000023366	FANCE (ENSSTOG00000000259)	PPARD (ENSSTOG00000019649)	DEF6 (ENSSTOG00000023306)	ZNF76 (ENSSTOG00000000256)	SCUBE3 (ENSSTOG00000000248)	TCP11 (ENSSTOG00000000247)	ANKS1A (ENSSTOG00000000241)	TAF11 (ENSSTOG00000013562)	BLTP3A (ENSSTOG00000026015)
Arctic ground squirrel	MODERN SPECIES	25	SRSF3 (ENSUPAG00010015936)	STK38 (ENSUPAG00010015884)	KCTD20 (ENSUPAG00010015823)	ENSUPAG00010015816	ENSUPAG00010015813	ETV7 (ENSUPAG00010015790)	BNIP5 (ENSUPAG00010015770)	PNPLA1 (ENSUPAG00010015749)	BRPF3 (ENSUPAG00010015651)	MAPK13 (ENSUPAG00010015630)	MAPK14 (ENSUPAG00010015552)	ENSUPAG00010015523	SRPK1 (ENSUPAG00010015498)	LHFPL5 (ENSUPAG00010015483)	CLPS (ENSUPAG00010015472)	ENSUPAG00010015457 #22	CLPSL2 (ENSUPAG00010015452)	ARMC12 (ENSUPAG00010015400)	FKBP5 (ENSUPAG00010015333)	ENSUPAG00010015324	TEAD3 (ENSUPAG00010015261)	RPL10A (ENSUPAG00010015209)	FANCE (ENSUPAG00010015114)	PPARD (ENSUPAG00010015080)	DEF6 (ENSUPAG00010015048)	ZNF76 (ENSUPAG00010014957)	SCUBE3 (ENSUPAG00010014823)	ENSUPAG00010014803	TCP11 (ENSUPAG00010014741)	ANKS1A (ENSUPAG00010014510)	TAF11 (ENSUPAG00010014501)
Alpin marmot	MODERN SPECIES	20	SRSF3 (ENSMMMG00000024376)	STK38 (ENSMMMG00000024371)	KCTD20 (ENSMMMG00000024365)	ENSMMMG00000024364	ENSMMMG00000024363	ENSMMMG00000024362	ETV7 (ENSMMMG00000024361)	PNPLA1 (ENSMMMG00000024358)	BRPF3 (ENSMMMG00000024354)	MAPK13 (ENSMMMG00000024349)	MAPK14 (ENSMMMG00000024347)	ENSMMMG00000024345	SRPK1 (ENSMMMG00000024344)	LHFPL5 (ENSMMMG00000024343)	CLPS (ENSMMMG00000024341)	ENSMMMG00000024340 #22	ARMC12 (ENSMMMG00000024339)	FKBP5 (ENSMMMG00000024335)	ENSMMMG00000024333	TEAD3 (ENSMMMG00000024332)	RPL10A (ENSMMMG00000024331)	FANCE (ENSMMMG00000024330)	PPARD (ENSMMMG00000024329)	DEF6 (ENSMMMG00000024328)	ZNF76 (ENSMMMG00000024327)	SCUBE3 (ENSMMMG00000024326)	ENSMMMG00000024324	TCP11 (ENSMMMG00000024323)	ANKS1A (ENSMMMG00000024322)	ENSMMMG00000024321	BLTP3A (ENSMMMG00000024320)
Eurasian red squirrel	MODERN SPECIES	17	MDFIC (ENSSVLG00005018724) #10	TFEC (ENSSVLG00005018526) #11	ENSSVLG00005018477	TES (ENSSVLG00005018372) #12	ENSSVLG00005018352	CAV2 (ENSSVLG00005018312) #13	CAV1 (ENSSVLG00005018241) #14	ENSSVLG00005018138	ENSSVLG00005018122	CAPZA2 (ENSSVLG00005017995) #16	ST7 (ENSSVLG00005015943) #17	WNT2 (ENSSVLG00005015494) #18	ENSSVLG00005015363 #19	CFTR (ENSSVLG00005014470) #20	CTTNBP2 (ENSSVLG00005014155) #21	LSM8 (ENSSVLG00005014022) #22	ENSSVLG00005013879 #23	ENSSVLG00005013739	KCND2 (ENSSVLG00005013713) #26	TSPAN12 (ENSSVLG00005013639) #27	ING3 (ENSSVLG00005013543) #28	CPED1 (ENSSVLG00005013406) #29	WNT16 (ENSSVLG00005013269) #30	FAM3C (ENSSVLG00005013224) #31	ENSSVLG00005013132	PTPRZ1 (ENSSVLG00005010362) #32	AASS (ENSSVLG00005009890) #33	FEZF1 (ENSSVLG00005009793) #34	CADPS2 (ENSSVLG00005008973) #35	TAS2R16 (ENSSVLG00005008847)	SLC13A1 (ENSSVLG00005008725)
Lagomorpha	ANCESTRAL SPECIES	24	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099
Pika	MODERN SPECIES	4443														CFTR (ENSOPRG00000014721) #20	CTTNBP2 (ENSOPRG00000014785) #21	LSM8 (ENSOPRG00000014809) #22	ENSOPRG00000014817 #23
Rabbit	MODERN SPECIES	18	ENSOCUG00000038780	ENSOCUG00000024434	FOXP2 (ENSOCUG00000001801) #9	MDFIC (ENSOCUG00000012455) #10	TFEC (ENSOCUG00000006292) #11	TES (ENSOCUG00000008491) #12	CAV2 (ENSOCUG00000014515) #13	CAV1 (ENSOCUG00000014520) #14	MET (ENSOCUG00000013060) #15	ST7 (ENSOCUG00000016156) #17	WNT2 (ENSOCUG00000016173) #18	ASZ1 (ENSOCUG00000015962) #19	CFTR (ENSOCUG00000010733) #20	ENSOCUG00000038182	CTTNBP2 (ENSOCUG00000001386) #21	LSM8 (ENSOCUG00000017359) #22	ENSOCUG00000021922 #23	ENSOCUG00000032257	ENSOCUG00000023965	ENSOCUG00000037642	KCND2 (ENSOCUG00000004149) #26	TSPAN12 (ENSOCUG00000001875) #27	ENSOCUG00000034467	ING3 (ENSOCUG00000001881) #28	CPED1 (ENSOCUG00000005778) #29	WNT16 (ENSOCUG00000014744) #30	FAM3C (ENSOCUG00000003351) #31	PTPRZ1 (ENSOCUG00000013209) #32	AASS (ENSOCUG00000013237) #33	FEZF1 (ENSOCUG00000021285) #34	ENSOCUG00000039223
Primates	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Pan	ANCESTRAL SPECIES	13	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00950000182802.A.a.a.e.b.b	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT01100000263543.a.g.b.b.b.a.c.b.a	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382
Chimpanzee	MODERN SPECIES	20	SMIM30 (ENSPTRG00000051687) #7	PPP1R3A (ENSPTRG00000019607) #8	FOXP2 (ENSPTRG00000019608) #9	MDFIC (ENSPTRG00000019609) #10	TFEC (ENSPTRG00000047353) #11	TES (ENSPTRG00000023877) #12	CAV2 (ENSPTRG00000040031) #13	CAV1 (ENSPTRG00000019613) #14	MET (ENSPTRG00000019614) #15	CAPZA2 (ENSPTRG00000019615) #16	ST7 (ENSPTRG00000019616) #17	WNT2 (ENSPTRG00000019617) #18	ASZ1 (ENSPTRG00000019618) #19	CFTR (ENSPTRG00000019619) #20	CTTNBP2 (ENSPTRG00000019620) #21	LSM8 (ENSPTRG00000046596) #22	ANKRD7 (ENSPTRG00000019622)	ENSPTRG00000050664	KCND2 (ENSPTRG00000047469) #26	TSPAN12 (ENSPTRG00000019624) #27	ING3 (ENSPTRG00000019625) #28	CPED1 (ENSPTRG00000019626) #29	ENSPTRG00000044943	WNT16 (ENSPTRG00000019627) #30	FAM3C (ENSPTRG00000022727) #31	ENSPTRG00000043912	ENSPTRG00000045463	PTPRZ1 (ENSPTRG00000019629) #32	AASS (ENSPTRG00000023614) #33	ENSPTRG00000044831	FEZF1 (ENSPTRG00000019631) #34
Bonobo	MODERN SPECIES	20	PPP1R3A (ENSPPAG00000041499) #8	FOXP2 (ENSPPAG00000030868) #9	ENSPPAG00000027647 #10	ENSPPAG00000004955 #11	TES (ENSPPAG00000034692) #12	CAV2 (ENSPPAG00000042201) #13	CAV1 (ENSPPAG00000036739) #14	MET (ENSPPAG00000038004) #15	CAPZA2 (ENSPPAG00000043436) #16	ENSPPAG00000042892	ST7 (ENSPPAG00000028019) #17	WNT2 (ENSPPAG00000030407) #18	ASZ1 (ENSPPAG00000041362) #19	CFTR (ENSPPAG00000040492) #20	CTTNBP2 (ENSPPAG00000032264) #21	ENSPPAG00000043228 #22	ANKRD7 (ENSPPAG00000011992)	ENSPPAG00000026407	KCND2 (ENSPPAG00000034678) #26	TSPAN12 (ENSPPAG00000033647) #27	ING3 (ENSPPAG00000029024) #28	CPED1 (ENSPPAG00000036887) #29	ENSPPAG00000032331	WNT16 (ENSPPAG00000028372) #30	FAM3C (ENSPPAG00000037694) #31	ENSPPAG00000042900	PTPRZ1 (ENSPPAG00000042542) #32	AASS (ENSPPAG00000041360) #33	FEZF1 (ENSPPAG00000027222) #34	CADPS2 (ENSPPAG00000029988) #35	ENSPPAG00000027242
Human	MODERN SPECIES	19	PPP1R3A (ENSG00000154415) #8	FOXP2 (ENSG00000128573) #9	MDFIC (ENSG00000135272) #10	TFEC (ENSG00000105967) #11	TES (ENSG00000135269) #12	CAV2 (ENSG00000105971) #13	CAV1 (ENSG00000105974) #14	MET (ENSG00000105976) #15	CAPZA2 (ENSG00000198898) #16	ST7 (ENSG00000004866) #17	ENSG00000288635	WNT2 (ENSG00000105989) #18	CFTR (ENSG00000001626) #20	ASZ1 (ENSG00000154438) #19	CTTNBP2 (ENSG00000077063) #21	LSM8 (ENSG00000128534) #22	ANKRD7 (ENSG00000106013)	KCND2 (ENSG00000184408) #26	TSPAN12 (ENSG00000106025) #27	ING3 (ENSG00000071243) #28	CPED1 (ENSG00000106034) #29	WNT16 (ENSG00000002745) #30	FAM3C (ENSG00000196937) #31	PTPRZ1 (ENSG00000106278) #32	AASS (ENSG00000008311) #33	FEZF1 (ENSG00000128610) #34	CADPS2 (ENSG00000081803) #35	RNF133 (ENSG00000188050) #36	RNF148 (ENSG00000235631)	TAS2R16 (ENSG00000128519)	SLC13A1 (ENSG00000081800)
Gorilla	MODERN SPECIES	20	PPP1R3A (ENSGGOG00000005621) #8	FOXP2 (ENSGGOG00000027435) #9	ENSGGOG00000042671 #10	TFEC (ENSGGOG00000009901) #11	TES (ENSGGOG00000016067) #12	CAV2 (ENSGGOG00000015074) #13	CAV1 (ENSGGOG00000027870) #14	MET (ENSGGOG00000012982) #15	CAPZA2 (ENSGGOG00000012158) #16	ENSGGOG00000027365	ST7 (ENSGGOG00000014410) #17	WNT2 (ENSGGOG00000009721) #18	ASZ1 (ENSGGOG00000002659) #19	CFTR (ENSGGOG00000004019) #20	CTTNBP2 (ENSGGOG00000014941) #21	LSM8 (ENSGGOG00000041883) #22	ANKRD7 (ENSGGOG00000025444)	ENSGGOG00000039138	KCND2 (ENSGGOG00000043715) #26	TSPAN12 (ENSGGOG00000034918) #27	ING3 (ENSGGOG00000004349) #28	CPED1 (ENSGGOG00000014223) #29	WNT16 (ENSGGOG00000016506) #30	FAM3C (ENSGGOG00000016446) #31	PTPRZ1 (ENSGGOG00000023127) #32	AASS (ENSGGOG00000027257) #33	CADPS2 (ENSGGOG00000034978) #35	ENSGGOG00000042593	TAS2R16 (ENSGGOG00000010354)	SLC13A1 (ENSGGOG00000006358)	IQUB (ENSGGOG00000015921)
Orangutan	MODERN SPECIES	20	SMIM30 (ENSPPYG00000017923) #7	PPP1R3A (ENSPPYG00000040617) #8	FOXP2 (ENSPPYG00000017926) #9	ENSPPYG00000038658 #10	TFEC (ENSPPYG00000031887) #11	TES (ENSPPYG00000017929) #12	CAV2 (ENSPPYG00000017930) #13	CAV1 (ENSPPYG00000017931) #14	MET (ENSPPYG00000017932) #15	CAPZA2 (ENSPPYG00000017933) #16	ST7 (ENSPPYG00000017934) #17	WNT2 (ENSPPYG00000017938) #18	ASZ1 (ENSPPYG00000017939) #19	CFTR (ENSPPYG00000017940) #20	CTTNBP2 (ENSPPYG00000017941) #21	LSM8 (ENSPPYG00000033700) #22	ANKRD7 (ENSPPYG00000018274)	KCND2 (ENSPPYG00000017943) #26	TSPAN12 (ENSPPYG00000017944) #27	ING3 (ENSPPYG00000017945) #28	CPED1 (ENSPPYG00000017946) #29	WNT16 (ENSPPYG00000017947) #30	FAM3C (ENSPPYG00000017948) #31	PTPRZ1 (ENSPPYG00000017949) #32	AASS (ENSPPYG00000017950) #33	FEZF1 (ENSPPYG00000017951) #34	CADPS2 (ENSPPYG00000017952) #35	ENSPPYG00000038373	TAS2R16 (ENSPPYG00000017953)	SLC13A1 (ENSPPYG00000017954)	IQUB (ENSPPYG00000017955)
Gibbon	MODERN SPECIES	3	FOXP2 (ENSNLEG00000011394) #9	ENSNLEG00000033212 #10	TFEC (ENSNLEG00000011480) #11	TES (ENSNLEG00000011494) #12	ENSNLEG00000011523 #13	CAV1 (ENSNLEG00000028023) #14	MET (ENSNLEG00000011530) #15	ENSNLEG00000011604 #16	ENSNLEG00000032514	ST7 (ENSNLEG00000011617) #17	ENSNLEG00000036065	WNT2 (ENSNLEG00000011635) #18	ASZ1 (ENSNLEG00000011649) #19	CFTR (ENSNLEG00000011680) #20	CTTNBP2 (ENSNLEG00000011717) #21	LSM8 (ENSNLEG00000011768) #22	ANKRD7 (ENSNLEG00000011773)	KCND2 (ENSNLEG00000035189) #26	TSPAN12 (ENSNLEG00000011786) #27	ING3 (ENSNLEG00000033180) #28	CPED1 (ENSNLEG00000011852) #29	WNT16 (ENSNLEG00000011905) #30	FAM3C (ENSNLEG00000011915) #31	PTPRZ1 (ENSNLEG00000011934) #32	AASS (ENSNLEG00000011978) #33	ENSNLEG00000012020 #34	CADPS2 (ENSNLEG00000012024) #35	ENSNLEG00000030675	SLC13A1 (ENSNLEG00000012101)	IQUB (ENSNLEG00000012115)	NDUFA5 (ENSNLEG00000030214)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.`b #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.`b #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.`b #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.`b #22	ENSGT00940000164704	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Rhesus	MODERN SPECIES	13	MDFIC (ENSMMUG00000019776) #10	TFEC (ENSMMUG00000038489) #11	TES (ENSMMUG00000007097) #12	CAV2 (ENSMMUG00000061706) #13	CAV1 (ENSMMUG00000014122) #14	MET (ENSMMUG00000006779) #15	CAPZA2 (ENSMMUG00000006784) #16	ENSMMUG00000052234	ST7 (ENSMMUG00000021722) #17	WNT2 (ENSMMUG00000055123) #18	ENSMMUG00000064285	ASZ1 (ENSMMUG00000021726) #19	CFTR (ENSMMUG00000011269) #20	ENSMMUG00000060895	CTTNBP2 (ENSMMUG00000010297) #21	LSM8 (ENSMMUG00000060460) #22	ANKRD7 (ENSMMUG00000050524)	ENSMMUG00000052979	KCND2 (ENSMMUG00000023308) #26	TSPAN12 (ENSMMUG00000023310) #27	ING3 (ENSMMUG00000002434) #28	CPED1 (ENSMMUG00000002435) #29	WNT16 (ENSMMUG00000002439) #30	FAM3C (ENSMMUG00000002440) #31	PTPRZ1 (ENSMMUG00000012418) #32	AASS (ENSMMUG00000044304) #33	FEZF1 (ENSMMUG00000021542) #34	CADPS2 (ENSMMUG00000021543) #35	TAS2R16 (ENSMMUG00000064934)	SLC13A1 (ENSMMUG00000016770)	IQUB (ENSMMUG00000011536)
Crab-eating macaque	MODERN SPECIES	13	MDFIC (ENSMFAG00000050895) #10	TFEC (ENSMFAG00000035684) #11	TES (ENSMFAG00000005909) #12	ENSMFAG00000064881	CAV2 (ENSMFAG00000048330) #13	CAV1 (ENSMFAG00000046330) #14	MET (ENSMFAG00000028602) #15	CAPZA2 (ENSMFAG00000041237) #16	ST7 (ENSMFAG00000008568) #17	WNT2 (ENSMFAG00000044147) #18	ASZ1 (ENSMFAG00000033937) #19	CFTR (ENSMFAG00000000170) #20	ENSMFAG00000053020	CTTNBP2 (ENSMFAG00000039255) #21	ENSMFAG00000056701	LSM8 (ENSMFAG00000047892) #22	ANKRD7 (ENSMFAG00000039109)	KCND2 (ENSMFAG00000046158) #26	TSPAN12 (ENSMFAG00000002377) #27	ING3 (ENSMFAG00000044425) #28	CPED1 (ENSMFAG00000031588) #29	WNT16 (ENSMFAG00000031359) #30	FAM3C (ENSMFAG00000043181) #31	PTPRZ1 (ENSMFAG00000032576) #32	AASS (ENSMFAG00000038411) #33	FEZF1 (ENSMFAG00000034053) #34	CADPS2 (ENSMFAG00000040292) #35	ENSMFAG00000041426	TAS2R16 (ENSMFAG00000064959)	SLC13A1 (ENSMFAG00000030904)	IQUB (ENSMFAG00000038536)
Pig-tailed macaque	MODERN SPECIES	95	MDFIC (ENSMNEG00000045431) #10	TFEC (ENSMNEG00000000097) #11	ENSMNEG00000021473	ENSMNEG00000038687	TES (ENSMNEG00000039367) #12	CAV2 (ENSMNEG00000042279) #13	CAV1 (ENSMNEG00000044995) #14	MET (ENSMNEG00000038573) #15	CAPZA2 (ENSMNEG00000044342) #16	ENSMNEG00000042576	ST7 (ENSMNEG00000043047) #17	WNT2 (ENSMNEG00000035850) #18	ASZ1 (ENSMNEG00000042319) #19	CFTR (ENSMNEG00000042569) #20	CTTNBP2 (ENSMNEG00000039935) #21	ENSMNEG00000036764 #22	ANKRD7 (ENSMNEG00000029642)	ENSMNEG00000007384	ENSMNEG00000038870	KCND2 (ENSMNEG00000001242) #26	TSPAN12 (ENSMNEG00000034729) #27	ING3 (ENSMNEG00000038183) #28	CPED1 (ENSMNEG00000037782) #29	WNT16 (ENSMNEG00000037874) #30	FAM3C (ENSMNEG00000006860) #31	PTPRZ1 (ENSMNEG00000038637) #32	AASS (ENSMNEG00000031610) #33	FEZF1 (ENSMNEG00000017416) #34	ENSMNEG00000037281	CADPS2 (ENSMNEG00000009908) #35	SLC13A1 (ENSMNEG00000035147)
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.`b #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a
Olive baboon	MODERN SPECIES	14	SMIM30 (ENSPANG00000031865) #7	PPP1R3A (ENSPANG00000017583) #8	FOXP2 (ENSPANG00000024715) #9	MDFIC (ENSPANG00000015175) #10	TFEC (ENSPANG00000022367) #11	TES (ENSPANG00000008934) #12	CAV2 (ENSPANG00000045499) #13	CAV1 (ENSPANG00000015174) #14	MET (ENSPANG00000024383) #15	CAPZA2 (ENSPANG00000024714) #16	ST7 (ENSPANG00000020407) #17	WNT2 (ENSPANG00000048086) #18	ASZ1 (ENSPANG00000016260) #19	CFTR (ENSPANG00000015987) #20	CTTNBP2 (ENSPANG00000007108) #21	ENSPANG00000039754 #22	ANKRD7 (ENSPANG00000016259)	ENSPANG00000045599	KCND2 (ENSPANG00000032534) #26	TSPAN12 (ENSPANG00000032965) #27	ING3 (ENSPANG00000018195) #28	CPED1 (ENSPANG00000016466) #29	WNT16 (ENSPANG00000025364) #30	FAM3C (ENSPANG00000006062) #31	ENSPANG00000044216	ENSPANG00000038082	ENSPANG00000045443	ENSPANG00000040908	PTPRZ1 (ENSPANG00000019044) #32	AASS (ENSPANG00000015986) #33	FEZF1 (ENSPANG00000013797) #34
Cercopithecinae_d	ANCESTRAL SPECIES	24	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.`b #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a
Sooty mangabey	MODERN SPECIES	283	ENSCATG00000039945	FOXP2 (ENSCATG00000043286) #9	MDFIC (ENSCATG00000005944) #10	TFEC (ENSCATG00000035757) #11	TES (ENSCATG00000018148) #12	CAV2 (ENSCATG00000031761) #13	CAV1 (ENSCATG00000030906) #14	MET (ENSCATG00000043244) #15	CAPZA2 (ENSCATG00000040117) #16	ST7 (ENSCATG00000044990) #17	ENSCATG00000034007	WNT2 (ENSCATG00000040118) #18	ASZ1 (ENSCATG00000034312) #19	CFTR (ENSCATG00000045275) #20	CTTNBP2 (ENSCATG00000043370) #21	LSM8 (ENSCATG00000045302) #22	ANKRD7 (ENSCATG00000005822)	ENSCATG00000014280	KCND2 (ENSCATG00000034255) #26	ENSCATG00000013909	TSPAN12 (ENSCATG00000032384) #27	ING3 (ENSCATG00000037947) #28	CPED1 (ENSCATG00000034268) #29	WNT16 (ENSCATG00000042098) #30	FAM3C (ENSCATG00000033663) #31	PTPRZ1 (ENSCATG00000042812) #32	AASS (ENSCATG00000024168) #33	FEZF1 (ENSCATG00000037503) #34	CADPS2 (ENSCATG00000017941) #35	ENSCATG00000041130	SLC13A1 (ENSCATG00000044783)
Drill	MODERN SPECIES	1433																ENSMLEG00000035828 #22	ENSMLEG00000014724
Vervet Monkey	MODERN SPECIES	13	PPP1R3A (ENSCSAG00000011088) #8	FOXP2 (ENSCSAG00000011057) #9	MDFIC (ENSCSAG00000010952) #10	TFEC (ENSCSAG00000010942) #11	TES (ENSCSAG00000010935) #12	CAV2 (ENSCSAG00000010925) #13	CAV1 (ENSCSAG00000010920) #14	MET (ENSCSAG00000010912) #15	CAPZA2 (ENSCSAG00000010902) #16	ST7 (ENSCSAG00000010897) #17	ENSCSAG00000010890	WNT2 (ENSCSAG00000010887) #18	ASZ1 (ENSCSAG00000010871) #19	ENSCSAG00000010820 #20	CTTNBP2 (ENSCSAG00000010811) #21	ENSCSAG00000010802 #22	ANKRD7 (ENSCSAG00000010796)	KCND2 (ENSCSAG00000010780) #26	TSPAN12 (ENSCSAG00000010773) #27	ING3 (ENSCSAG00000010764) #28	CPED1 (ENSCSAG00000010728) #29	WNT16 (ENSCSAG00000010637) #30	FAM3C (ENSCSAG00000010624) #31	PTPRZ1 (ENSCSAG00000010610) #32	AASS (ENSCSAG00000010587) #33	FEZF1 (ENSCSAG00000010570) #34	CADPS2 (ENSCSAG00000010492) #35	RNF133 (ENSCSAG00000019132) #36	RNF148 (ENSCSAG00000019133)	TAS2R16 (ENSCSAG00000019134)	SLC13A1 (ENSCSAG00000010311)
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00730000111212.ab #22
Vervet Monkey	MODERN SPECIES	23	HTR1A (ENSCSAG00000019005)	RNF180 (ENSCSAG00000015992)	RGS7BP (ENSCSAG00000015985)	SHISAL2B (ENSCSAG00000015980)	SREK1IP1 (ENSCSAG00000015974)	CWC27 (ENSCSAG00000015969)	ENSCSAG00000015963	ENSCSAG00000019006	ENSCSAG00000015957	CENPK (ENSCSAG00000015953)	PPWD1 (ENSCSAG00000015951)	TRIM23 (ENSCSAG00000015945)	TRAPPC13 (ENSCSAG00000015937)	SGTB (ENSCSAG00000015931)	NLN (ENSCSAG00000015928)	ENSCSAG00000019007 #22	ENSCSAG00000019008	ERBIN (ENSCSAG00000015920)	ENSCSAG00000015908	ENSCSAG00000015898	MAST4 (ENSCSAG00000015895)	CD180 (ENSCSAG00000015891)	ENSCSAG00000019009	PIK3R1 (ENSCSAG00000015888)	ENSCSAG00000015881	SLC30A5 (ENSCSAG00000015873)	CCNB1 (ENSCSAG00000015867)	CENPH (ENSCSAG00000015861)	CDK7 (ENSCSAG00000015846)	CCDC125 (ENSCSAG00000015817)	ENSCSAG00000015802
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000154484.B.a.a	ENSGT00950000182909.a	ENSGT00940000153725.b	ENSGT00940000161622	ENSGT01100000263493.a.b.b.a.a.a.a.b.b	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00390000006243	ENSGT00940000158733	ENSGT00940000158562	ENSGT00530000065159	ENSGT00390000015280	ENSGT00940000158321	ENSGT00950000183171.A.b.a.a	ENSGT00730000111212.ab #22	ENSGT00910000146862	ENSGT00940000159526	ENSGT00730000110872.a	ENSGT00940000156399	ENSGT00940000161183	ENSGT00940000155553	ENSGT00390000000566.r.b.b.a.b	ENSGT00940000155754	ENSGT00940000154586	ENSGT00390000009578	ENSGT00390000017443.t.a.a	ENSGT00940000155179.c.a	ENSGT00440000039958	ENSGT00390000015930.y.a.a	ENSGT00940000155097
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000163637	ENSGT00910000147727	ENSGT00940000154484.B.a.a	ENSGT00950000182909.a	ENSGT00940000153725.b	ENSGT00940000161622	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00390000006243	ENSGT00940000158733	ENSGT00940000158562	ENSGT00390000015280	ENSGT00940000158321	ENSGT00950000183171.A.b.a.a	ENSGT00730000111212.ab #22	ENSGT00910000146862	ENSGT00940000159526	ENSGT00730000110872.a	ENSGT00940000156399	ENSGT00940000161183	ENSGT00940000155553	ENSGT00390000000566.r.b.b.a.b	ENSGT00940000155754	ENSGT00940000154586	ENSGT00390000009578	ENSGT00390000017443.t.a.a	ENSGT00940000155179.c.a	ENSGT00440000039958	ENSGT00390000015930.y.a.a	ENSGT00940000155097
Cercopithecinae_d	ANCESTRAL SPECIES	187		ENSGT00910000147727	ENSGT00940000154484.B.a.a	ENSGT00950000182909.a	ENSGT00940000153725.b	ENSGT00940000161622	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00390000006243	ENSGT00940000158733	ENSGT00940000158562	ENSGT00390000015280	ENSGT00940000158321	ENSGT00950000183171.A.b.a.a	ENSGT00730000111212.ab #22	ENSGT00910000146862	ENSGT00940000159526
Drill	MODERN SPECIES	1508						SHISAL2B (ENSMLEG00000036189)	SREK1IP1 (ENSMLEG00000030454)	CWC27 (ENSMLEG00000029952)	ADAMTS6 (ENSMLEG00000042342)	CENPK (ENSMLEG00000041730)	PPWD1 (ENSMLEG00000038982)	TRIM23 (ENSMLEG00000040891)	TRAPPC13 (ENSMLEG00000035550)	SGTB (ENSMLEG00000032069)	NLN (ENSMLEG00000032550)	ENSMLEG00000039324 #22	ENSMLEG00000033517	ERBIN (ENSMLEG00000037570)
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000154484.B.a.a	ENSGT00950000182909.a	ENSGT00940000153725.b	ENSGT00940000161622	ENSGT01100000263493.a.b.b.a.a.a.a.b.b	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00390000006243	ENSGT00940000158733	ENSGT00940000158562	ENSGT00530000065159	ENSGT00390000015280	ENSGT00940000158321	ENSGT00950000183171.A.b.a.a	ENSGT00730000111212.ab #22	ENSGT00910000146862	ENSGT00940000159526	ENSGT00730000110872.a	ENSGT00390000000707.k.a.a.a	ENSGT00940000156399	ENSGT00940000161183	ENSGT00940000155553	ENSGT00390000000566.r.b.b.a.b	ENSGT00940000155754	ENSGT00940000154586	ENSGT00390000009578	ENSGT00390000017443.t.b.a	ENSGT00940000155179.c.a	ENSGT00440000039958	ENSGT00390000015930.y.a.b.a
Pig-tailed macaque	MODERN SPECIES	283	IPO11 (ENSMNEG00000032061)	ENSMNEG00000029563	HTR1A (ENSMNEG00000005737)	RNF180 (ENSMNEG00000029156)	RGS7BP (ENSMNEG00000042653)	SHISAL2B (ENSMNEG00000037285)	SREK1IP1 (ENSMNEG00000040413)	CWC27 (ENSMNEG00000026520)	ADAMTS6 (ENSMNEG00000029474)	CENPK (ENSMNEG00000045242)	PPWD1 (ENSMNEG00000037074)	TRIM23 (ENSMNEG00000038500)	TRAPPC13 (ENSMNEG00000034792)	SGTB (ENSMNEG00000044712)	NLN (ENSMNEG00000038491)	ENSMNEG00000011141 #22	ENSMNEG00000042743	ERBIN (ENSMNEG00000021904)
Rhinopithecus	ANCESTRAL SPECIES	328	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000155264.m.b.a	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b.n.a #16	ENSGT00910000147739	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704
Golden snub-nosed monkey	MODERN SPECIES	2727					CAV2 (ENSRROG00000034834) #13	CAV1 (ENSRROG00000035906) #14	ENSRROG00000011599	MET (ENSRROG00000042487) #15	ENSRROG00000039690	CAPZA2 (ENSRROG00000005766) #16	ST7 (ENSRROG00000037257) #17	WNT2 (ENSRROG00000016067) #18	ASZ1 (ENSRROG00000041719) #19	CFTR (ENSRROG00000026792) #20	CTTNBP2 (ENSRROG00000040541) #21	LSM8 (ENSRROG00000039618) #22	ANKRD7 (ENSRROG00000029970)
Black snub-nosed monkey	MODERN SPECIES	209	ENSRBIG00000032733	TMEM270 (ENSRBIG00000036134)	ELN (ENSRBIG00000041564)	LIMK1 (ENSRBIG00000028914)	EIF4H (ENSRBIG00000014939)	LAT2 (ENSRBIG00000037481)	RFC2 (ENSRBIG00000034145)	CLIP2 (ENSRBIG00000029416)	CAPZA2 (ENSRBIG00000043946) #16	ENSRBIG00000034828	ST7 (ENSRBIG00000035138) #17	WNT2 (ENSRBIG00000044176) #18	ASZ1 (ENSRBIG00000026606) #19	CFTR (ENSRBIG00000037824) #20	CTTNBP2 (ENSRBIG00000028759) #21	LSM8 (ENSRBIG00000032851) #22	ANKRD7 (ENSRBIG00000030492)
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Cebidae	ANCESTRAL SPECIES	9	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000164704	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Bolivian squirrel monkey	MODERN SPECIES	44	PPP1R3A (ENSSBOG00000031325) #8	FOXP2 (ENSSBOG00000029085) #9	MDFIC (ENSSBOG00000032800) #10	TFEC (ENSSBOG00000024242) #11	TES (ENSSBOG00000031613) #12	CAV2 (ENSSBOG00000023114) #13	CAV1 (ENSSBOG00000029819) #14	MET (ENSSBOG00000018494) #15	ENSSBOG00000033214	CAPZA2 (ENSSBOG00000026180) #16	ST7 (ENSSBOG00000031136) #17	WNT2 (ENSSBOG00000026115) #18	ASZ1 (ENSSBOG00000014420) #19	CFTR (ENSSBOG00000034493) #20	CTTNBP2 (ENSSBOG00000032674) #21	LSM8 (ENSSBOG00000023223) #22	ANKRD7 (ENSSBOG00000021785)	ENSSBOG00000018270	KCND2 (ENSSBOG00000020186) #26	TSPAN12 (ENSSBOG00000018467) #27	ING3 (ENSSBOG00000032892) #28	CPED1 (ENSSBOG00000030761) #29	WNT16 (ENSSBOG00000028903) #30	FAM3C (ENSSBOG00000035343) #31	ENSSBOG00000023808	PTPRZ1 (ENSSBOG00000031204) #32	AASS (ENSSBOG00000023976) #33	FEZF1 (ENSSBOG00000024490) #34	ENSSBOG00000030358	CADPS2 (ENSSBOG00000027008) #35	SLC13A1 (ENSSBOG00000023645)
Capuchin	MODERN SPECIES	90	SMIM30 (ENSCCAG00000007418) #7	PPP1R3A (ENSCCAG00000033016) #8	FOXP2 (ENSCCAG00000003699) #9	MDFIC (ENSCCAG00000022551) #10	TFEC (ENSCCAG00000022469) #11	TES (ENSCCAG00000036382) #12	CAV2 (ENSCCAG00000023447) #13	CAV1 (ENSCCAG00000031872) #14	MET (ENSCCAG00000031166) #15	CAPZA2 (ENSCCAG00000030246) #16	ST7 (ENSCCAG00000022641) #17	WNT2 (ENSCCAG00000031998) #18	ASZ1 (ENSCCAG00000028858) #19	CFTR (ENSCCAG00000026860) #20	CTTNBP2 (ENSCCAG00000021725) #21	LSM8 (ENSCCAG00000021329) #22	ANKRD7 (ENSCCAG00000028943)
Marmoset	MODERN SPECIES	20	ENSCJAG00000053054	TFEC (ENSCJAG00000047848) #11	TES (ENSCJAG00000005193) #12	ENSCJAG00000079520	CAV2 (ENSCJAG00000054908) #13	CAV1 (ENSCJAG00000063550) #14	MET (ENSCJAG00000005145) #15	CAPZA2 (ENSCJAG00000005079) #16	ST7 (ENSCJAG00000004988) #17	ENSCJAG00000086472	WNT2 (ENSCJAG00000004983) #18	ASZ1 (ENSCJAG00000004944) #19	ENSCJAG00000074557	CFTR (ENSCJAG00000004895) #20	CTTNBP2 (ENSCJAG00000004816) #21	LSM8 (ENSCJAG00000077574) #22	ENSCJAG00000064536	ANKRD7 (ENSCJAG00000004788)	VIPR2 (ENSCJAG00000014084)	DYNC2I1 (ENSCJAG00000014109)	ESYT2 (ENSCJAG00000014123)	NCAPG2 (ENSCJAG00000015156)	PTPRN2 (ENSCJAG00000005320)	DNAJB6 (ENSCJAG00000005288)	ENSCJAG00000085556	UBE3C (ENSCJAG00000004298)	ENSCJAG00000078997	ENSCJAG00000004336	ENSCJAG00000079983	LMBR1 (ENSCJAG00000004344)	RNF32 (ENSCJAG00000004357)
Mas night monkey	MODERN SPECIES	298														CFTR (ENSANAG00000018699) #20	CTTNBP2 (ENSANAG00000035530) #21	LSM8 (ENSANAG00000027771) #22	ANKRD7 (ENSANAG00000027505)
Tarsier	MODERN SPECIES	5766																LSM8 (ENSTSYG00000032434) #22
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01100000263477.B.d.b
Lemuriformes	DUPLICATION
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.bb #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Mouse lemur	MODERN SPECIES	2	SMIM30 (ENSMICG00000041783) #7	PPP1R3A (ENSMICG00000046647) #8	FOXP2 (ENSMICG00000003648) #9	ENSMICG00000003662 #10	TFEC (ENSMICG00000006995) #11	TES (ENSMICG00000007002) #12	CAV2 (ENSMICG00000045272) #13	CAV1 (ENSMICG00000026847) #14	MET (ENSMICG00000000697) #15	CAPZA2 (ENSMICG00000032607) #16	ST7 (ENSMICG00000005741) #17	WNT2 (ENSMICG00000005749) #18	ASZ1 (ENSMICG00000005752) #19	CFTR (ENSMICG00000046039) #20	CTTNBP2 (ENSMICG00000005787) #21	LSM8 (ENSMICG00000042730) #22	ENSMICG00000036567 #23	ENSMICG00000048064	KCND2 (ENSMICG00000043428) #26	TSPAN12 (ENSMICG00000000958) #27	ENSMICG00000013934 #28	CPED1 (ENSMICG00000036835) #29	WNT16 (ENSMICG00000013963) #30	FAM3C (ENSMICG00000034347) #31	ENSMICG00000026612	ENSMICG00000030043	PTPRZ1 (ENSMICG00000000608) #32	AASS (ENSMICG00000000617) #33	FEZF1 (ENSMICG00000033586) #34	ENSMICG00000034262	CADPS2 (ENSMICG00000001954) #35
Lemuriformes_a	ANCESTRAL SPECIES	103	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.bb #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Coquerels sifaka	MODERN SPECIES	544	PPP1R3A (ENSPCOG00000020348) #8	FOXP2 (ENSPCOG00000027439) #9	MDFIC (ENSPCOG00000002097) #10	TFEC (ENSPCOG00000026787) #11	ENSPCOG00000014908	TES (ENSPCOG00000009261) #12	CAV2 (ENSPCOG00000025837) #13	CAV1 (ENSPCOG00000024742) #14	MET (ENSPCOG00000022991) #15	CAPZA2 (ENSPCOG00000021478) #16	ST7 (ENSPCOG00000008893) #17	WNT2 (ENSPCOG00000027908) #18	ASZ1 (ENSPCOG00000018076) #19	CFTR (ENSPCOG00000014929) #20	CTTNBP2 (ENSPCOG00000000372) #21	ENSPCOG00000003309 #22	ENSPCOG00000017095	KCND2 (ENSPCOG00000015891) #26	TSPAN12 (ENSPCOG00000021720) #27	ENSPCOG00000028787	CPED1 (ENSPCOG00000016564) #29	WNT16 (ENSPCOG00000015467) #30	FAM3C (ENSPCOG00000019661) #31	ENSPCOG00000025054	PTPRZ1 (ENSPCOG00000025981) #32	AASS (ENSPCOG00000027625) #33	FEZF1 (ENSPCOG00000021658) #34	ENSPCOG00000007052	CADPS2 (ENSPCOG00000028725) #35	ENSPCOG00000013869	IQUB (ENSPCOG00000016916)
Greater bamboo lemur	MODERN SPECIES	654								ENSPSMG00000015643	CAPZA2 (ENSPSMG00000015591) #16	ST7 (ENSPSMG00000015388) #17	WNT2 (ENSPSMG00000015124) #18	ASZ1 (ENSPSMG00000015104) #19	CFTR (ENSPSMG00000015055) #20	ENSPSMG00000014944	CTTNBP2 (ENSPSMG00000014929) #21	ENSPSMG00000014842 #22	ENSPSMG00000014837 #23	ENSPSMG00000014820	KCND2 (ENSPSMG00000014803) #26	TSPAN12 (ENSPSMG00000014789) #27	ING3 (ENSPSMG00000014755) #28	CPED1 (ENSPSMG00000014697) #29	WNT16 (ENSPSMG00000014604) #30	FAM3C (ENSPSMG00000014578) #31	PTPRZ1 (ENSPSMG00000014542) #32	AASS (ENSPSMG00000014416) #33	FEZF1 (ENSPSMG00000014374) #34	CADPS2 (ENSPSMG00000014152) #35	TAS2R16 (ENSPSMG00000013871)	SLC13A1 (ENSPSMG00000013858)	IQUB (ENSPSMG00000013811)
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00730000111212.cb #22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00730000111212.cb #22
Coquerels sifaka	MODERN SPECIES	371	THAP9 (ENSPCOG00000019315)	LIN54 (ENSPCOG00000016222)	COPS4 (ENSPCOG00000019543)	ENSPCOG00000024594	COQ2 (ENSPCOG00000016807)	HPSE (ENSPCOG00000028547)	HELQ (ENSPCOG00000001114)	MRPS18C (ENSPCOG00000017634)	ABRAXAS1 (ENSPCOG00000024017)	GPAT3 (ENSPCOG00000015710)	NKX6-1 (ENSPCOG00000026560)	CDS1 (ENSPCOG00000017585)	WDFY3 (ENSPCOG00000022708)	ARHGAP24 (ENSPCOG00000000502)	MAPK10 (ENSPCOG00000023059)	ENSPCOG00000017982 #22	PTPN13 (ENSPCOG00000023990)	SLC10A6 (ENSPCOG00000026098)	C4orf36 (ENSPCOG00000023888)	AFF1 (ENSPCOG00000027339)	KLHL8 (ENSPCOG00000018983)	HSD17B13 (ENSPCOG00000016156)	ENSPCOG00000003550	HSD17B11 (ENSPCOG00000024521)	NUDT9 (ENSPCOG00000028049)	SPARCL1 (ENSPCOG00000023448)	DMP1 (ENSPCOG00000023727)	IBSP (ENSPCOG00000018630)	MEPE (ENSPCOG00000028720)	SPP1 (ENSPCOG00000006026)	PKD2 (ENSPCOG00000019291)
Greater bamboo lemur	MODERN SPECIES	64	LIN54 (ENSPSMG00000018520)	COPS4 (ENSPSMG00000018382)	PLAC8 (ENSPSMG00000018310)	ENSPSMG00000018300	COQ2 (ENSPSMG00000018286)	HPSE (ENSPSMG00000018251)	HELQ (ENSPSMG00000018202)	MRPS18C (ENSPSMG00000018158)	ABRAXAS1 (ENSPSMG00000018130)	GPAT3 (ENSPSMG00000018113)	NKX6-1 (ENSPSMG00000018100)	CDS1 (ENSPSMG00000018082)	WDFY3 (ENSPSMG00000018028)	ENSPSMG00000017913	ARHGAP24 (ENSPSMG00000017866)	ENSPSMG00000017824 #22	MAPK10 (ENSPSMG00000017774)	PTPN13 (ENSPSMG00000017328)	SLC10A6 (ENSPSMG00000016898)	C4orf36 (ENSPSMG00000016893)	AFF1 (ENSPSMG00000016833)	KLHL8 (ENSPSMG00000016695)	HSD17B13 (ENSPSMG00000016633)	HSD17B11 (ENSPSMG00000016611)	NUDT9 (ENSPSMG00000016567)	SPARCL1 (ENSPSMG00000016553)	DSPP (ENSPSMG00000016539)	DMP1 (ENSPSMG00000016501)	IBSP (ENSPSMG00000016491)	ENSPSMG00000016488	MEPE (ENSPSMG00000016484)
Bushbaby	MODERN SPECIES	152	PPP1R3A (ENSOGAG00000005234) #8	FOXP2 (ENSOGAG00000002833) #9	ENSOGAG00000027543	MDFIC (ENSOGAG00000002835) #10	TFEC (ENSOGAG00000010066) #11	TES (ENSOGAG00000010070) #12	CAV2 (ENSOGAG00000025779) #13	CAV1 (ENSOGAG00000014265) #14	MET (ENSOGAG00000003961) #15	CAPZA2 (ENSOGAG00000012540) #16	ST7 (ENSOGAG00000013563) #17	WNT2 (ENSOGAG00000013574) #18	ASZ1 (ENSOGAG00000003040) #19	CFTR (ENSOGAG00000001756) #20	CTTNBP2 (ENSOGAG00000001760) #21	LSM8 (ENSOGAG00000013377) #22	ENSOGAG00000006943	ENSOGAG00000025182	ENSOGAG00000027459	KCND2 (ENSOGAG00000031295) #26	TSPAN12 (ENSOGAG00000004209) #27	ING3 (ENSOGAG00000004212) #28	CPED1 (ENSOGAG00000004213) #29	WNT16 (ENSOGAG00000004218) #30	FAM3C (ENSOGAG00000004219) #31	PTPRZ1 (ENSOGAG00000016074) #32	AASS (ENSOGAG00000016086) #33	FEZF1 (ENSOGAG00000002663) #34	CADPS2 (ENSOGAG00000002665) #35	RNF133 (ENSOGAG00000002671) #36	RNF148 (ENSOGAG00000032042)
Laurasiatheria	ANCESTRAL SPECIES	21	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00730000111212 #22
Common shrew	MODERN SPECIES	9477																ENSSARG00000009628 #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Camelidae	ANCESTRAL SPECIES	2	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT01030000234550.a.a.d.a.a	ENSGT00990000210481
Alpaca	MODERN SPECIES	4499																LSM8 (ENSVPAG00000001530) #22
Arabian camel	MODERN SPECIES	33	PPP1R3A (ENSCDRG00005001622) #8	FOXP2 (ENSCDRG00005001657) #9	MDFIC (ENSCDRG00005001780) #10	TFEC (ENSCDRG00005001818) #11	TES (ENSCDRG00005001915) #12	ENSCDRG00005001925	CAV2 (ENSCDRG00005001940) #13	CAV1 (ENSCDRG00005001956) #14	MET (ENSCDRG00005001975) #15	CAPZA2 (ENSCDRG00005002005) #16	ST7 (ENSCDRG00005002055) #17	WNT2 (ENSCDRG00005002127) #18	ASZ1 (ENSCDRG00005002142) #19	CFTR (ENSCDRG00005002205) #20	CTTNBP2 (ENSCDRG00005002863) #21	LSM8 (ENSCDRG00005003356) #22	ENSCDRG00005003389 #23	ENSCDRG00005003449	KCND2 (ENSCDRG00005003477) #26	TSPAN12 (ENSCDRG00005003541) #27	ING3 (ENSCDRG00005003592) #28	CPED1 (ENSCDRG00005003698) #29	WNT16 (ENSCDRG00005003896) #30	FAM3C (ENSCDRG00005003932) #31	PTPRZ1 (ENSCDRG00005004019) #32	AASS (ENSCDRG00005004255) #33	FEZF1 (ENSCDRG00005004315) #34	CADPS2 (ENSCDRG00005004422) #35	SLC13A1 (ENSCDRG00005004922)	ENSCDRG00005004974	IQUB (ENSCDRG00005004987)
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Pecora	DUPLICATION
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	96																ENSGT00730000111212.i.a #22	ENSGT00940000161777.b #23
Yarkand deer	MODERN SPECIES	1323	RRAGB (ENSCHYG00000020728)	FOXR2 (ENSCHYG00000020686)	ENSCHYG00000020662	ENSCHYG00000020557	GPR173 (ENSCHYG00000020549)	TSPYL2 (ENSCHYG00000020486)	KANTR (ENSCHYG00000020454)	ENSCHYG00000020423	KDM5C (ENSCHYG00000017975)	IQSEC2 (ENSCHYG00000017227)	SMC1A (ENSCHYG00000016933)	RIBC1 (ENSCHYG00000016704)	HSD17B10 (ENSCHYG00000016557)	ENSCHYG00000016502	HUWE1 (ENSCHYG00000016142)	ENSCHYG00000016027 #22	ENSCHYG00000015970	PHF8 (ENSCHYG00000015566)	ENSCHYG00000015498	ENSCHYG00000015432	FAM120C (ENSCHYG00000015064)	WNK3 (ENSCHYG00000014818)	ENSCHYG00000014706	FGD1 (ENSCHYG00000014503)	GNL3L (ENSCHYG00000014302)	MAGED2 (ENSCHYG00000014061)	ENSCHYG00000014013	PFKFB1 (ENSCHYG00000013428)	APEX2 (ENSCHYG00000013314)	ALAS2 (ENSCHYG00000013150)	ENSCHYG00000013116
Percora_a	ANCESTRAL SPECIES	101																ENSGT00730000111212.i.a #22	ENSGT00940000161777.b #23
Bovidae	ANCESTRAL SPECIES	102																ENSGT00730000111212.i.a #22	ENSGT00940000161777.b #23
Bovinae	ANCESTRAL SPECIES	60								ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #22	ENSGT00940000161777.b #23
Bos	ANCESTRAL SPECIES	8	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00950000185265.d	ENSGT00950000185265.c	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #22	ENSGT00940000161777.b #23	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000153305.d.`b.b	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Bos_a	ANCESTRAL SPECIES	12	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00950000185265.c	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #22	ENSGT00940000161777.b #23	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00990000210481
Wild yak	MODERN SPECIES	362														ENSBMUG00000011929	ENSBMUG00000011918	LSM8 (ENSBMUG00000011907) #22	ENSBMUG00000011893 #23
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000159695.h	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #22	ENSGT00550000074794.k.b.a	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000153305.d.`b.b	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a
Cow	MODERN SPECIES	23	ENSBTAG00000053253	SUGCT (ENSBTAG00000032121)	MPLKIP (ENSBTAG00000018715)	CDK13 (ENSBTAG00000001528)	ENSBTAG00000054825	RALA (ENSBTAG00000006661)	YAE1 (ENSBTAG00000001892)	POU6F2 (ENSBTAG00000013648)	VPS41 (ENSBTAG00000007305)	AMPH (ENSBTAG00000031967)	ENSBTAG00000000144	ENSBTAG00000053474	ENSBTAG00000055254	ENSBTAG00000002859	ENSBTAG00000049399	LSM8 (ENSBTAG00000012649) #22	ENSBTAG00000006152	ENSBTAG00000031464	KCND2 (ENSBTAG00000032077) #26	TSPAN12 (ENSBTAG00000015337) #27	ING3 (ENSBTAG00000016332) #28	CPED1 (ENSBTAG00000002938) #29	WNT16 (ENSBTAG00000002940) #30	FAM3C (ENSBTAG00000007976) #31	PTPRZ1 (ENSBTAG00000012119) #32	AASS (ENSBTAG00000012128) #33	FEZF1 (ENSBTAG00000005103) #34	CADPS2 (ENSBTAG00000005110) #35	TAS2R16 (ENSBTAG00000032049)	SLC13A1 (ENSBTAG00000006674)	IQUB (ENSBTAG00000004405)
Hybrid Bos Indicus	MODERN SPECIES	23	ENSBIXG00005020596	ENSBIXG00005020605	ENSBIXG00005020637	ENSBIXG00005003487	ENSBIXG00005020654	ENSBIXG00005020661	ENSBIXG00005020677	ENSBIXG00005020685	ENSBIXG00005020688	ENSBIXG00005020710	ENSBIXG00005020722	ENSBIXG00005020732	ENSBIXG00005020739	ENSBIXG00005003508	ENSBIXG00005020753	LSM8 (ENSBIXG00005007213) #22	ENSBIXG00005020819	ENSBIXG00005020842	ENSBIXG00005020857	KCND2 (ENSBIXG00005020893) #26	TSPAN12 (ENSBIXG00005020981) #27	ENSBIXG00005021009	ING3 (ENSBIXG00005021098) #28	CPED1 (ENSBIXG00005021186) #29	WNT16 (ENSBIXG00005021232) #30	FAM3C (ENSBIXG00005021252) #31	PTPRZ1 (ENSBIXG00005021416) #32	AASS (ENSBIXG00005021503) #33	ENSBIXG00005003630	FEZF1 (ENSBIXG00005000004) #34	CADPS2 (ENSBIXG00005007840) #35
American bison	MODERN SPECIES	3079														ENSBBBG00000022660	ENSBBBG00000022653	LSM8 (ENSBBBG00000022649) #22	ENSBBBG00000022640 #23	ENSBBBG00000022631	ENSBBBG00000022622
Siberian musk deer	MODERN SPECIES	257	ENSMMSG00000019123	FOXB1 (ENSMMSG00000019181)	ENSMMSG00000019194	ENSMMSG00000019221	BNIP2 (ENSMMSG00000019237)	GTF2A2 (ENSMMSG00000019278)	GCNT3 (ENSMMSG00000019356)	FAM81A (ENSMMSG00000019367)	MYO1E (ENSMMSG00000019415)	ENSMMSG00000019472	ENSMMSG00000019489	RNF111 (ENSMMSG00000019565)	ENSMMSG00000019602	SLTM (ENSMMSG00000019627)	MINDY2 (ENSMMSG00000019661)	ENSMMSG00000019695 #22	ADAM10 (ENSMMSG00000019713)	LIPC (ENSMMSG00000019830)	AQP9 (ENSMMSG00000019948)	ALDH1A2 (ENSMMSG00000019982)	POLR2M (ENSMMSG00000020150)	MYZAP (ENSMMSG00000020205)	CGNL1 (ENSMMSG00000020305)	TCF12 (ENSMMSG00000020389)	ZNF280D (ENSMMSG00000020750)	MNS1 (ENSMMSG00000020858)	TEX9 (ENSMMSG00000005857)	ENSMMSG00000006005	RFX7 (ENSMMSG00000006029)	NEDD4 (ENSMMSG00000006090)	PRTG (ENSMMSG00000006260)
Pecora	ANCESTRAL SPECIES																	ENSGT00730000111212.i.b #22
Yarkand deer	MODERN SPECIES	9	ENSCHYG00000022441	MPLKIP (ENSCHYG00000022483)	CDK13 (ENSCHYG00000022509)	RALA (ENSCHYG00000022661)	YAE1 (ENSCHYG00000022705)	POU6F2 (ENSCHYG00000022756)	VPS41 (ENSCHYG00000023031)	AMPH (ENSCHYG00000023423)	ENSCHYG00000023515	TRGV9 (ENSCHYG00000023546)	ENSCHYG00000023578	ENSCHYG00000023641	ENSCHYG00000023676	ENSCHYG00000023709	ENSCHYG00000023745	ENSCHYG00000023772 #22	ENSCHYG00000023821	KCND2 (ENSCHYG00000023858) #26	TSPAN12 (ENSCHYG00000023924) #27	ING3 (ENSCHYG00000023988) #28	CPED1 (ENSCHYG00000024149) #29	WNT16 (ENSCHYG00000024300) #30	FAM3C (ENSCHYG00000024340) #31	ENSCHYG00000024383	AASS (ENSCHYG00000026446) #33	FEZF1 (ENSCHYG00000026487) #34	CADPS2 (ENSCHYG00000026611) #35	ENSCHYG00000026909	TAS2R16 (ENSCHYG00000026914)	SLC13A1 (ENSCHYG00000026920)	IQUB (ENSCHYG00000026931)
Percora_a	ANCESTRAL SPECIES																	ENSGT00730000111212.i.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00730000111212.i.b #22
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.b #22	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099
Rambouillet Sheep	MODERN SPECIES	20	SUGCT (ENSOARG00020000282)	MPLKIP (ENSOARG00020000391)	CDK13 (ENSOARG00020000425)	RALA (ENSOARG00020000572)	ENSOARG00020000581	POU6F2 (ENSOARG00020000606)	VPS41 (ENSOARG00020000815)	AMPH (ENSOARG00020001336)	ENSOARG00020001937	ENSOARG00020001954	ENSOARG00020001968	ENSOARG00020001983	ENSOARG00020002001	ENSOARG00020002006	ENSOARG00020002009	LSM8 (ENSOARG00020002018) #22	ENSOARG00020002076	ENSOARG00020002086	KCND2 (ENSOARG00020002102) #26	TSPAN12 (ENSOARG00020002120) #27	ING3 (ENSOARG00020002148) #28	CPED1 (ENSOARG00020002197) #29	WNT16 (ENSOARG00020002230) #30	FAM3C (ENSOARG00020002246) #31	PTPRZ1 (ENSOARG00020002274) #32	AASS (ENSOARG00020002396) #33	FEZF1 (ENSOARG00020002443) #34	CADPS2 (ENSOARG00020002550) #35	ENSOARG00020003299	TAS2R16 (ENSOARG00020003346)	SLC13A1 (ENSOARG00020003399)
Goat	MODERN SPECIES	23	INHBA (ENSCHIG00000025901)	SUGCT (ENSCHIG00000017599)	MPLKIP (ENSCHIG00000021871)	ENSCHIG00000022322	CDK13 (ENSCHIG00000022113)	RALA (ENSCHIG00000013549)	YAE1 (ENSCHIG00000016002)	ENSCHIG00000016882	ENSCHIG00000020600	VPS41 (ENSCHIG00000005959)	ENSCHIG00000011903	AMPH (ENSCHIG00000020495)	ENSCHIG00000013794	ENSCHIG00000018076	ENSCHIG00000007301	LSM8 (ENSCHIG00000014201) #22	ENSCHIG00000022010	KCND2 (ENSCHIG00000017913) #26	ENSCHIG00000025503	TSPAN12 (ENSCHIG00000012755) #27	ING3 (ENSCHIG00000009707) #28	CPED1 (ENSCHIG00000007761) #29	WNT16 (ENSCHIG00000016384) #30	FAM3C (ENSCHIG00000026717) #31	PTPRZ1 (ENSCHIG00000017298) #32	AASS (ENSCHIG00000009703) #33	FEZF1 (ENSCHIG00000012204) #34	CADPS2 (ENSCHIG00000022820) #35	SLC13A1 (ENSCHIG00000014530)	IQUB (ENSCHIG00000021401)	NDUFA5 (ENSCHIG00000014906)
Siberian musk deer	MODERN SPECIES	86								AMPH (ENSMMSG00000008661)	ENSMMSG00000008617	ENSMMSG00000008601	ENSMMSG00000008592	ENSMMSG00000008575	ENSMMSG00000008519	ENSMMSG00000008499	ENSMMSG00000008472	ENSMMSG00000008438 #22	ENSMMSG00000008402 #23	ENSMMSG00000008377
Pecora	ANCESTRAL SPECIES																	ENSGT00730000111212.j #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00730000111212.j #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00730000111212.j #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00730000111212.j #22
Bos	ANCESTRAL SPECIES																	ENSGT00730000111212.j #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00730000111212.j #22
Domestic yak	MODERN SPECIES	23	RALA (ENSBGRG00000009084)	YAE1 (ENSBGRG00000009045)	POU6F2 (ENSBGRG00000008844)	VPS41 (ENSBGRG00000008270)	AMPH (ENSBGRG00000007825)	ENSBGRG00000007791	ENSBGRG00000007724	ENSBGRG00000007684	ENSBGRG00000007662	ENSBGRG00000007638	ENSBGRG00000007614	ENSBGRG00000007552	ENSBGRG00000007497	ENSBGRG00000007474	ENSBGRG00000007452	ENSBGRG00000007313 #22	ENSBGRG00000026231	ENSBGRG00000026227	ENSBGRG00000026222	ENSBGRG00000026214	KCND2 (ENSBGRG00000026206) #26	TSPAN12 (ENSBGRG00000026203) #27	ENSBGRG00000026200	ING3 (ENSBGRG00000026186) #28	ENSBGRG00000026183	CPED1 (ENSBGRG00000026179) #29	WNT16 (ENSBGRG00000026173) #30	FAM3C (ENSBGRG00000026163) #31	PTPRZ1 (ENSBGRG00000025791) #32	AASS (ENSBGRG00000025745) #33	FEZF1 (ENSBGRG00000025722) #34
Yarkand deer	MODERN SPECIES	60														ENSCHYG00000019205	ENSCHYG00000019255	ENSCHYG00000019665 #22	ENSCHYG00000019725	ENSCHYG00000019762	ENSCHYG00000019880
Cetacea	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a.c.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00990000210481	ENSGT00390000014326	ENSGT00390000008099.hb.b
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00390000018696.ab.b	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a.c.a #31	ENSGT01010000229619	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00990000210481
Sperm whale	MODERN SPECIES	16	FOXP2 (ENSPCTG00005000718) #9	MDFIC (ENSPCTG00005000577) #10	ENSPCTG00005000563	TFEC (ENSPCTG00005000435) #11	TES (ENSPCTG00005000357) #12	CAV2 (ENSPCTG00005000335) #13	ENSPCTG00005000318	CAV1 (ENSPCTG00005000307) #14	MET (ENSPCTG00005000258) #15	CAPZA2 (ENSPCTG00005003893) #16	ST7 (ENSPCTG00005003837) #17	WNT2 (ENSPCTG00005003803) #18	ASZ1 (ENSPCTG00005003795) #19	CFTR (ENSPCTG00005003550) #20	CTTNBP2 (ENSPCTG00005003446) #21	LSM8 (ENSPCTG00005003422) #22	ENSPCTG00005003384	ENSPCTG00005003369 #26	ENSPCTG00005003353	TSPAN12 (ENSPCTG00005003339) #27	ING3 (ENSPCTG00005003320) #28	CPED1 (ENSPCTG00005003296) #29	WNT16 (ENSPCTG00005003279) #30	FAM3C (ENSPCTG00005003260) #31	ENSPCTG00005003246	PTPRZ1 (ENSPCTG00005003179) #32	AASS (ENSPCTG00005003140) #33	FEZF1 (ENSPCTG00005003111) #34	CADPS2 (ENSPCTG00005002800) #35	SLC13A1 (ENSPCTG00005002663)	ENSPCTG00005002648
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00390000018696.ab.b	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a.c.a #31	ENSGT01010000229619	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00990000210481
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00390000018696.ab.b	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a.c.a #31	ENSGT01010000229619	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000162417.B	ENSGT01030000234550.a.a.d.a.a
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00390000018696.ab.b	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a.c.a #31	ENSGT00390000002517.a.b.b.c.b.b	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000162417.B	ENSGT01030000234550.a.a.d.a.a
Narwhal	MODERN SPECIES	306	FOXP2 (ENSMMNG00015006660) #9	MDFIC (ENSMMNG00015006992) #10	ENSMMNG00015007012	TFEC (ENSMMNG00015007059) #11	TES (ENSMMNG00015007124) #12	CAV2 (ENSMMNG00015007157) #13	CAV1 (ENSMMNG00015007169) #14	MET (ENSMMNG00015007208) #15	CAPZA2 (ENSMMNG00015007277) #16	ST7 (ENSMMNG00015007638) #17	ENSMMNG00015008101	WNT2 (ENSMMNG00015008114) #18	ASZ1 (ENSMMNG00015008132) #19	CFTR (ENSMMNG00015008191) #20	CTTNBP2 (ENSMMNG00015008242) #21	LSM8 (ENSMMNG00015008300) #22	ENSMMNG00015008326 #23	KCND2 (ENSMMNG00015008351) #26	ENSMMNG00015008364	TSPAN12 (ENSMMNG00015008372) #27	ING3 (ENSMMNG00015008385) #28	CPED1 (ENSMMNG00015008430) #29	WNT16 (ENSMMNG00015008481) #30	ENSMMNG00015008492 #31	ENSMMNG00015008511	PTPRZ1 (ENSMMNG00015008685) #32	AASS (ENSMMNG00015008962) #33	ENSMMNG00015008989	FEZF1 (ENSMMNG00015009003) #34	CADPS2 (ENSMMNG00015009046) #35	ENSMMNG00015009100
Beluga whale	MODERN SPECIES	72	FOXP2 (ENSDLEG00000010860) #9	MDFIC (ENSDLEG00000010705) #10	ENSDLEG00000010692	TFEC (ENSDLEG00000010641) #11	TES (ENSDLEG00000010623) #12	CAV2 (ENSDLEG00000010616) #13	CAV1 (ENSDLEG00000010596) #14	MET (ENSDLEG00000010515) #15	CAPZA2 (ENSDLEG00000010489) #16	ST7 (ENSDLEG00000010402) #17	WNT2 (ENSDLEG00000010382) #18	ENSDLEG00000010374	ASZ1 (ENSDLEG00000010228) #19	CFTR (ENSDLEG00000009386) #20	CTTNBP2 (ENSDLEG00000009204) #21	LSM8 (ENSDLEG00000009162) #22	ENSDLEG00000009082 #23	ENSDLEG00000009057 #26	ENSDLEG00000009040	TSPAN12 (ENSDLEG00000009002) #27	ING3 (ENSDLEG00000008957) #28	CPED1 (ENSDLEG00000008806) #29	WNT16 (ENSDLEG00000008763) #30	ENSDLEG00000008725 #31	ENSDLEG00000008697	PTPRZ1 (ENSDLEG00000008502) #32	ENSDLEG00000008472	AASS (ENSDLEG00000008185) #33	FEZF1 (ENSDLEG00000008135) #34	CADPS2 (ENSDLEG00000007974) #35	SLC13A1 (ENSDLEG00000013207)
Vaquita	MODERN SPECIES	20	FOXP2 (ENSPSNG00000008393) #9	MDFIC (ENSPSNG00000008245) #10	ENSPSNG00000008210	TFEC (ENSPSNG00000008020) #11	TES (ENSPSNG00000007868) #12	CAV2 (ENSPSNG00000007812) #13	CAV1 (ENSPSNG00000007757) #14	MET (ENSPSNG00000007686) #15	CAPZA2 (ENSPSNG00000007567) #16	ST7 (ENSPSNG00000007232) #17	WNT2 (ENSPSNG00000007074) #18	ASZ1 (ENSPSNG00000006996) #19	CFTR (ENSPSNG00000006540) #20	ENSPSNG00000006366	CTTNBP2 (ENSPSNG00000006336) #21	LSM8 (ENSPSNG00000006282) #22	ENSPSNG00000006207 #23	ENSPSNG00000006167	KCND2 (ENSPSNG00000006128) #26	TSPAN12 (ENSPSNG00000006100) #27	ING3 (ENSPSNG00000006054) #28	CPED1 (ENSPSNG00000006017) #29	WNT16 (ENSPSNG00000005981) #30	FAM3C (ENSPSNG00000005949) #31	ENSPSNG00000005910	PTPRZ1 (ENSPSNG00000005040) #32	AASS (ENSPSNG00000004701) #33	FEZF1 (ENSPSNG00000004653) #34	CADPS2 (ENSPSNG00000004337) #35	ENSPSNG00000004162	ENSPSNG00000020858
Dolphin	MODERN SPECIES	3850																LSM8 (ENSTTRG00000001023) #22
Blue whale	MODERN SPECIES	20	FOXP2 (ENSBMSG00010007623) #9	MDFIC (ENSBMSG00010007534) #10	ENSBMSG00010007525	TFEC (ENSBMSG00010007456) #11	ENSBMSG00010007423	TES (ENSBMSG00010007413) #12	CAV2 (ENSBMSG00010007399) #13	CAV1 (ENSBMSG00010007383) #14	MET (ENSBMSG00010007360) #15	CAPZA2 (ENSBMSG00010007309) #16	ST7 (ENSBMSG00010007217) #17	WNT2 (ENSBMSG00010007149) #18	ASZ1 (ENSBMSG00010007122) #19	CFTR (ENSBMSG00010007097) #20	CTTNBP2 (ENSBMSG00010007046) #21	LSM8 (ENSBMSG00010007016) #22	ENSBMSG00010006964 #23	ENSBMSG00010006935	KCND2 (ENSBMSG00010006920) #26	TSPAN12 (ENSBMSG00010006907) #27	ING3 (ENSBMSG00010006892) #28	CPED1 (ENSBMSG00010006795) #29	WNT16 (ENSBMSG00010006732) #30	ENSBMSG00010006715 #31	PTPRZ1 (ENSBMSG00010006646) #32	AASS (ENSBMSG00010006576) #33	CADPS2 (ENSBMSG00010006309) #35	ENSBMSG00010006242	TAS2R16 (ENSBMSG00010006234)	SLC13A1 (ENSBMSG00010006206)	ENSBMSG00010006184
Suina	ANCESTRAL SPECIES	19	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Chacoan peccary	MODERN SPECIES	72																LSM8 (ENSCWAG00000000714) #22	ENSCWAG00000000745	KCND2 (ENSCWAG00000000757) #26	TSPAN12 (ENSCWAG00000000779) #27	ING3 (ENSCWAG00000000811) #28	CPED1 (ENSCWAG00000000900) #29	WNT16 (ENSCWAG00000001054) #30	FAM3C (ENSCWAG00000001074) #31	ENSCWAG00000001100	PTPRZ1 (ENSCWAG00000001255) #32	AASS (ENSCWAG00000002749) #33	ENSCWAG00000002779	FEZF1 (ENSCWAG00000002791) #34	CADPS2 (ENSCWAG00000002856) #35	TAS2R16 (ENSCWAG00000003208)	SLC13A1 (ENSCWAG00000003215)
Pig	MODERN SPECIES	9	PPP1R3A (ENSSSCG00000016640) #8	FOXP2 (ENSSSCG00000016639) #9	MDFIC (ENSSSCG00000021885) #10	TFEC (ENSSSCG00000038138) #11	TES (ENSSSCG00000040344) #12	CAV2 (ENSSSCG00000016635) #13	CAV1 (ENSSSCG00000016634) #14	MET (ENSSSCG00000024351) #15	CAPZA2 (ENSSSCG00000028113) #16	ST7 (ENSSSCG00000016629) #17	WNT2 (ENSSSCG00000016628) #18	ASZ1 (ENSSSCG00000016627) #19	CFTR (ENSSSCG00000016626) #20	CTTNBP2 (ENSSSCG00000016625) #21	ENSSSCG00000050786	LSM8 (ENSSSCG00000021652) #22	ENSSSCG00000016623 #23	ENSSSCG00000048258	ENSSSCG00000063110	ENSSSCG00000062673	KCND2 (ENSSSCG00000016621) #26	TSPAN12 (ENSSSCG00000016620) #27	ING3 (ENSSSCG00000016619) #28	CPED1 (ENSSSCG00000016618) #29	WNT16 (ENSSSCG00000016617) #30	FAM3C (ENSSSCG00000016616) #31	PTPRZ1 (ENSSSCG00000016614) #32	AASS (ENSSSCG00000016613) #33	FEZF1 (ENSSSCG00000031221) #34	CADPS2 (ENSSSCG00000016611) #35	TAS2R16 (ENSSSCG00000037368)
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT01100000263477.B.d.b
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b
Chiroptera	ANCESTRAL SPECIES	41	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b
Megabat	MODERN SPECIES	3650														CFTR (ENSPVAG00000000987) #20	CTTNBP2 (ENSPVAG00000000989) #21	LSM8 (ENSPVAG00000000990) #22	ENSPVAG00000000992 #23
Microchiroptera	ANCESTRAL SPECIES	23	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1230										ENSMLUG00000010218	ENSMLUG00000012244 #20	ENSMLUG00000029285	ENSMLUG00000027669 #21	ENSMLUG00000005598 #21	ENSMLUG00000025631	ENSMLUG00000006837 #22	ENSMLUG00000016140 #23	ENSMLUG00000030553
Microbat	MODERN SPECIES	943	ACTR2 (ENSMLUG00000005227)	RAB1A (ENSMLUG00000009489)	CEP68 (ENSMLUG00000002435)	SLC1A4 (ENSMLUG00000002430)	SERTAD2 (ENSMLUG00000013854)	AFTPH (ENSMLUG00000008012)	LGALSL (ENSMLUG00000008001)	ENSMLUG00000015944	PELI1 (ENSMLUG00000003152)	VPS54 (ENSMLUG00000003130)	UGP2 (ENSMLUG00000003123)	MDH1 (ENSMLUG00000002352)	WDPCP (ENSMLUG00000002336)	OTX1 (ENSMLUG00000002330)	EHBP1 (ENSMLUG00000002314)	ENSMLUG00000027762 #22	B3GNT2 (ENSMLUG00000009924)	ENSMLUG00000022697	CCT4 (ENSMLUG00000016138)	FAM161A (ENSMLUG00000030514)	XPO1 (ENSMLUG00000010670)	USP34 (ENSMLUG00000003414)	ENSMLUG00000027445	ENSMLUG00000003408	C2orf74 (ENSMLUG00000027969)	SANBR (ENSMLUG00000007627)	PEX13 (ENSMLUG00000025131)	PUS10 (ENSMLUG00000000082)	REL (ENSMLUG00000007454)	PAPOLG (ENSMLUG00000009853)	ENSMLUG00000014903
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	18	FOXP2 (ENSRFEG00010019612) #9	MDFIC (ENSRFEG00010019544) #10	TFEC (ENSRFEG00010019376) #11	ENSRFEG00010019318	TES (ENSRFEG00010019300) #12	CAV2 (ENSRFEG00010019273) #13	CAV1 (ENSRFEG00010019224) #14	MET (ENSRFEG00010019152) #15	CAPZA2 (ENSRFEG00010019032) #16	ST7 (ENSRFEG00010018747) #17	WNT2 (ENSRFEG00010018681) #18	ASZ1 (ENSRFEG00010018560) #19	ENSRFEG00010018517	CFTR (ENSRFEG00010017672) #20	CTTNBP2 (ENSRFEG00010017601) #21	ENSRFEG00010017515 #22	ENSRFEG00010017376 #23	ENSRFEG00010017356	ENSRFEG00010017340	KCND2 (ENSRFEG00010017250) #26	TSPAN12 (ENSRFEG00010017208) #27	ING3 (ENSRFEG00010017054) #28	CPED1 (ENSRFEG00010016992) #29	WNT16 (ENSRFEG00010016926) #30	FAM3C (ENSRFEG00010016879) #31	PTPRZ1 (ENSRFEG00010016626) #32	AASS (ENSRFEG00010016545) #33	FEZF1 (ENSRFEG00010016383) #34	RNF133 (ENSRFEG00010016316) #36	CADPS2 (ENSRFEG00010015967) #35	TAS2R16 (ENSRFEG00010015907)
Greater horseshoe bat	MODERN SPECIES	18	CAPZA2 (ENSRFEG00010019032) #16	MET (ENSRFEG00010019152) #15	CAV1 (ENSRFEG00010019224) #14	CAV2 (ENSRFEG00010019273) #13	TES (ENSRFEG00010019300) #12	ENSRFEG00010019318	TFEC (ENSRFEG00010019376) #11	MDFIC (ENSRFEG00010019544) #10	FOXP2 (ENSRFEG00010019612) #9	PPP1R3A (ENSRFEG00010019863) #8	ENSRFEG00010019896	SMIM30 (ENSRFEG00010019921) #7	GPR85 (ENSRFEG00010019929)	BMT2 (ENSRFEG00010019948)	TMEM168 (ENSRFEG00010019981)	ENSRFEG00010020008 #22
Equus	ANCESTRAL SPECIES	13	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01100000263477.B.d.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099
Donkey	MODERN SPECIES		SMIM30 (ENSEASG00005004307) #7	PPP1R3A (ENSEASG00005008800) #8	FOXP2 (ENSEASG00005008813) #9	MDFIC (ENSEASG00005025429) #10	TFEC (ENSEASG00005036487) #11	TES (ENSEASG00005008832) #12	ENSEASG00005034179 #13	CAV1 (ENSEASG00005030696) #14	MET (ENSEASG00005008840) #15	CAPZA2 (ENSEASG00005008845) #16	ST7 (ENSEASG00005008859) #17	WNT2 (ENSEASG00005008889) #18	ASZ1 (ENSEASG00005008894) #19	CFTR (ENSEASG00005008909) #20	CTTNBP2 (ENSEASG00005008929) #21	LSM8 (ENSEASG00005027658) #22	ENSEASG00005008937	KCND2 (ENSEASG00005008938) #26	TSPAN12 (ENSEASG00005008941) #27	ING3 (ENSEASG00005008942) #28	ENSEASG00005028595 #29	ENSEASG00005008958 #29	WNT16 (ENSEASG00005008977) #30	FAM3C (ENSEASG00005008980) #31	PTPRZ1 (ENSEASG00005008993) #32	AASS (ENSEASG00005009016) #33	FEZF1 (ENSEASG00005009026) #34	CADPS2 (ENSEASG00005009041) #35	TAS2R16 (ENSEASG00005009304)	SLC13A1 (ENSEASG00005009316)	IQUB (ENSEASG00005009328)
Horse	MODERN SPECIES	25	FOXP2 (ENSECAG00000023867) #9	MDFIC (ENSECAG00000013772) #10	TFEC (ENSECAG00000013937) #11	TES (ENSECAG00000016917) #12	CAV2 (ENSECAG00000037857) #13	CAV1 (ENSECAG00000009134) #14	MET (ENSECAG00000010385) #15	CAPZA2 (ENSECAG00000021693) #16	ST7 (ENSECAG00000008375) #17	ENSECAG00000059035	WNT2 (ENSECAG00000024641) #18	ENSECAG00000043879	ASZ1 (ENSECAG00000011002) #19	CFTR (ENSECAG00000009139) #20	CTTNBP2 (ENSECAG00000025076) #21	LSM8 (ENSECAG00000024025) #22	KCND2 (ENSECAG00000002703) #26	TSPAN12 (ENSECAG00000001545) #27	ING3 (ENSECAG00000008147) #28	CPED1 (ENSECAG00000017094) #29	FAM3C (ENSECAG00000008527) #31	WNT16 (ENSECAG00000006880) #30	PTPRZ1 (ENSECAG00000011293) #32	AASS (ENSECAG00000021479) #33	FEZF1 (ENSECAG00000022989) #34	CADPS2 (ENSECAG00000024021) #35	SLC13A1 (ENSECAG00000020615)	IQUB (ENSECAG00000005249)	ASB15 (ENSECAG00000011379)	LMOD2 (ENSECAG00000057098)	WASL (ENSECAG00000015578)
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00390000007479.y.b	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163928 #36	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00390000007479.y.b	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00390000015224.c.b.b.a.b.a	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00900000143058	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00390000015224.c.b.b.a.b.a	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00900000143058	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00390000015224.c.b.b.a.b.a	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382	ENSGT01030000234550.a.a.d.a.a
leopard	MODERN SPECIES	72	FOXP2 (ENSPPRG00000000808) #9	MDFIC (ENSPPRG00000000981) #10	TFEC (ENSPPRG00000001348) #11	TES (ENSPPRG00000001505) #12	CAV2 (ENSPPRG00000001790) #13	CAV1 (ENSPPRG00000001995) #14	ENSPPRG00000002566	ENSPPRG00000018383 #15	CAPZA2 (ENSPPRG00000002625) #16	ST7 (ENSPPRG00000004797) #17	WNT2 (ENSPPRG00000005517) #18	ASZ1 (ENSPPRG00000005580) #19	CFTR (ENSPPRG00000005895) #20	ENSPPRG00000005928	CTTNBP2 (ENSPPRG00000006253) #21	LSM8 (ENSPPRG00000006444) #22	ENSPPRG00000006566 #23
lion	MODERN SPECIES	2	SMIM30 (ENSPLOG00000002985) #7	PPP1R3A (ENSPLOG00000003004) #8	FOXP2 (ENSPLOG00000003059) #9	MDFIC (ENSPLOG00000003217) #10	TFEC (ENSPLOG00000003253) #11	TES (ENSPLOG00000003361) #12	CAV2 (ENSPLOG00000003376) #13	CAV1 (ENSPLOG00000003388) #14	ENSPLOG00000003404	CAPZA2 (ENSPLOG00000003487) #16	ST7 (ENSPLOG00000003747) #17	WNT2 (ENSPLOG00000004225) #18	ASZ1 (ENSPLOG00000004231) #19	CFTR (ENSPLOG00000004296) #20	CTTNBP2 (ENSPLOG00000004483) #21	LSM8 (ENSPLOG00000004510) #22	ENSPLOG00000004527 #23	ENSPLOG00000004535	ENSPLOG00000004539	KCND2 (ENSPLOG00000004548) #26	TSPAN12 (ENSPLOG00000004557) #27	ING3 (ENSPLOG00000004574) #28	CPED1 (ENSPLOG00000004600) #29	WNT16 (ENSPLOG00000004662) #30	FAM3C (ENSPLOG00000004694) #31	PTPRZ1 (ENSPLOG00000004914) #32	AASS (ENSPLOG00000005333) #33	FEZF1 (ENSPLOG00000005395) #34	CADPS2 (ENSPLOG00000005636) #35	SLC13A1 (ENSPLOG00000006227)	ENSPLOG00000006309
Tiger	MODERN SPECIES	296	FOXP2 (ENSPTIG00000005044) #9	MDFIC (ENSPTIG00000017402) #10	TFEC (ENSPTIG00000018257) #11	TES (ENSPTIG00000021347) #12	CAV2 (ENSPTIG00000021626) #13	CAV1 (ENSPTIG00000021784) #14	ENSPTIG00000021973	ENSPTIG00000002142 #15	CAPZA2 (ENSPTIG00000022058) #16	ST7 (ENSPTIG00000022098) #17	WNT2 (ENSPTIG00000014444) #18	ASZ1 (ENSPTIG00000014931) #19	CFTR (ENSPTIG00000017030) #20	ENSPTIG00000017786	CTTNBP2 (ENSPTIG00000019650) #21	LSM8 (ENSPTIG00000004722) #22	ENSPTIG00000005580 #23	KCND2 (ENSPTIG00000006572) #26	TSPAN12 (ENSPTIG00000007270) #27	ING3 (ENSPTIG00000008202) #28	CPED1 (ENSPTIG00000010438) #29	WNT16 (ENSPTIG00000013116) #30	FAM3C (ENSPTIG00000014410) #31	PTPRZ1 (ENSPTIG00000014785) #32	AASS (ENSPTIG00000020365) #33	FEZF1 (ENSPTIG00000006097) #34	CADPS2 (ENSPTIG00000008072) #35	ENSPTIG00000019227	SLC13A1 (ENSPTIG00000019436)	IQUB (ENSPTIG00000020106)	NDUFA5 (ENSPTIG00000021225)
Cat	MODERN SPECIES	1	PPP1R3A (ENSFCAG00000026838) #8	FOXP2 (ENSFCAG00000006921) #9	MDFIC (ENSFCAG00000046079) #10	TFEC (ENSFCAG00000027627) #11	TES (ENSFCAG00000029911) #12	CAV2 (ENSFCAG00000023324) #13	CAV1 (ENSFCAG00000034785) #14	MET (ENSFCAG00000009534) #15	CAPZA2 (ENSFCAG00000027103) #16	ST7 (ENSFCAG00000013253) #17	WNT2 (ENSFCAG00000036421) #18	ASZ1 (ENSFCAG00000023842) #19	CFTR (ENSFCAG00000014955) #20	CTTNBP2 (ENSFCAG00000014956) #21	ENSFCAG00000032304	LSM8 (ENSFCAG00000036620) #22	ENSFCAG00000031973 #23	ENSFCAG00000047748	ENSFCAG00000038564	KCND2 (ENSFCAG00000007877) #26	TSPAN12 (ENSFCAG00000023943) #27	ING3 (ENSFCAG00000029472) #28	CPED1 (ENSFCAG00000023648) #29	FAM3C (ENSFCAG00000023087) #31	WNT16 (ENSFCAG00000029148) #30	ENSFCAG00000030800	PTPRZ1 (ENSFCAG00000015760) #32	AASS (ENSFCAG00000029895) #33	FEZF1 (ENSFCAG00000013521) #34	CADPS2 (ENSFCAG00000000574) #35	SLC13A1 (ENSFCAG00000013589)
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00390000007479.y.b	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00390000007479.y.b.a	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000153661.b.b.m	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Mustelinae	ANCESTRAL SPECIES	9	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00390000007479.y.b.a	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000153661.b.b.m	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Ferret	MODERN SPECIES	168	PPP1R3A (ENSMPUG00000007681) #8	FOXP2 (ENSMPUG00000007316) #9	MDFIC (ENSMPUG00000007309) #10	ENSMPUG00000007300 ##24	TFEC (ENSMPUG00000007248) #11	TES (ENSMPUG00000007238) #12	CAV2 (ENSMPUG00000007232) #13	CAV1 (ENSMPUG00000007224) #14	MET (ENSMPUG00000007199) #15	ST7 (ENSMPUG00000007184) #17	WNT2 (ENSMPUG00000007172) #18	ASZ1 (ENSMPUG00000007155) #19	CFTR (ENSMPUG00000007138) #20	CTTNBP2 (ENSMPUG00000007124) #21	ENSMPUG00000007110	ENSMPUG00000007100 #22	ENSMPUG00000007093	ENSMPUG00000007078	KCND2 (ENSMPUG00000007070) #26	ENSMPUG00000007063	TSPAN12 (ENSMPUG00000007059) #27	ING3 (ENSMPUG00000007054) #28	CPED1 (ENSMPUG00000006988) #29	WNT16 (ENSMPUG00000006909) #30	FAM3C (ENSMPUG00000006897) #31	PTPRZ1 (ENSMPUG00000006874) #32	AASS (ENSMPUG00000006862) #33	FEZF1 (ENSMPUG00000006851) #34	CADPS2 (ENSMPUG00000006834) #35	SLC13A1 (ENSMPUG00000006826)	IQUB (ENSMPUG00000006817)
American mink	MODERN SPECIES	3	PPP1R3A (ENSNVIG00000003288) #8	FOXP2 (ENSNVIG00000002817) #9	MDFIC (ENSNVIG00000002794) #10	TFEC (ENSNVIG00000002689) #11	TES (ENSNVIG00000002631) #12	CAV2 (ENSNVIG00000002622) #13	CAV1 (ENSNVIG00000002597) #14	ENSNVIG00000002563	ENSNVIG00000002532 #15	CAPZA2 (ENSNVIG00000002498) #16	ST7 (ENSNVIG00000002263) #17	WNT2 (ENSNVIG00000002216) #18	ASZ1 (ENSNVIG00000002205) #19	CFTR (ENSNVIG00000002052) #20	CTTNBP2 (ENSNVIG00000002011) #21	LSM8 (ENSNVIG00000001976) #22	ENSNVIG00000001960 #23	ENSNVIG00000001954	KCND2 (ENSNVIG00000001932) #26	TSN12 (ENSNVIG00000001909) #27	ING3 (ENSNVIG00000001859) #28	CPED1 (ENSNVIG00000001760) #29	WNT16 (ENSNVIG00000001731) #30	FAM3C (ENSNVIG00000001700) #31	PTPRZ1 (ENSNVIG00000001621) #32	AASS (ENSNVIG00000001583) #33	FEZF1 (ENSNVIG00000001557) #34	ENSNVIG00000001541	CADPS2 (ENSNVIG00000001278) #35	SLC13A1 (ENSNVIG00000001237)	IQUB (ENSNVIG00000001202)
Ursidae	ANCESTRAL SPECIES	12	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685.c #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00490000043329.a.a.a.pb.c.b	ENSGT01020000230614	ENSGT00940000155472.a.a #26	ENSGT01010000229956	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a
Ursus	ANCESTRAL SPECIES	82					ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293.i #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00490000043329.a.a.a.pb.c.b	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099	ENSGT00940000157073
American black bear	DUPLICATION
American black bear	MODERN SPECIES	2339															ENSUAMG00000006942 #22	ENSUAMG00000006943 #22	ENSUAMG00000006945 #23
American black bear	MODERN SPECIES	2339														ENSUAMG00000006945 #23	ENSUAMG00000006943 #22	ENSUAMG00000006942 #22
Polar bear	MODERN SPECIES	281					TFEC (ENSUMAG00000002162) #11	TES (ENSUMAG00000002178) #12	ENSUMAG00000002184 #13	CAV1 (ENSUMAG00000002191) #14	MET (ENSUMAG00000002307) #15	CAPZA2 (ENSUMAG00000002886) #16	ST7 (ENSUMAG00000002912) #17	WNT2 (ENSUMAG00000002965) #18	ASZ1 (ENSUMAG00000002973) #19	CFTR (ENSUMAG00000003001) #20	CTTNBP2 (ENSUMAG00000003029) #21	LSM8 (ENSUMAG00000003073) #22	ENSUMAG00000003079 #23	ENSUMAG00000003108	ENSUMAG00000003110	TSPAN12 (ENSUMAG00000003123) #27	ING3 (ENSUMAG00000003142) #28	CPED1 (ENSUMAG00000003165) #29	WNT16 (ENSUMAG00000003225) #30	FAM3C (ENSUMAG00000003239) #31	PTPRZ1 (ENSUMAG00000003260) #32	AASS (ENSUMAG00000003535) #33	FEZF1 (ENSUMAG00000004731) #34	CADPS2 (ENSUMAG00000004849) #35	ENSUMAG00000005539	IQUB (ENSUMAG00000005549)	ENSUMAG00000005561
Giant Panda	MODERN SPECIES		SMIM30 (ENSAMEG00000019099) #7	PPP1R3A (ENSAMEG00000002577) #8	FOXP2 (ENSAMEG00000002526) #9	MDFIC (ENSAMEG00000027010) #10	TFEC (ENSAMEG00000018238) #11	TES (ENSAMEG00000018237) #12	CAV2 (ENSAMEG00000029109) #13	CAV1 (ENSAMEG00000027933) #14	MET (ENSAMEG00000001314) #15	CAPZA2 (ENSAMEG00000001306) #16	ST7 (ENSAMEG00000001267) #17	WNT2 (ENSAMEG00000001256) #18	ASZ1 (ENSAMEG00000001244) #19	CFTR (ENSAMEG00000001184) #20	CTTNBP2 (ENSAMEG00000001163) #21	LSM8 (ENSAMEG00000001162) #22	ENSAMEG00000001159 #23	ENSAMEG00000027977	ENSAMEG00000031336	KCND2 (ENSAMEG00000020256) #26	ENSAMEG00000029289	TSPAN12 (ENSAMEG00000005955) #27	ING3 (ENSAMEG00000005975) #28	CPED1 (ENSAMEG00000006006) #29	WNT16 (ENSAMEG00000006022) #30	FAM3C (ENSAMEG00000006035) #31	PTPRZ1 (ENSAMEG00000004272) #32	AASS (ENSAMEG00000004321) #33	FEZF1 (ENSAMEG00000004386) #34	CADPS2 (ENSAMEG00000004390) #35	SLC13A1 (ENSAMEG00000004466)
Canidae	ANCESTRAL SPECIES	52	ENSGT00410000028909	ENSGT00940000156579	ENSGT00730000111385	ENSGT01030000234535.F.b	ENSGT01080000257410.D.c	ENSGT01080000257410.D.d	ENSGT00940000156369	ENSGT00940000160670	ENSGT00390000009048.a.b	ENSGT00390000005782	ENSGT00530000064469	ENSGT00940000157592	ENSGT00390000001830.j	ENSGT00940000157299	ENSGT00940000156973	ENSGT00730000111212 #22	ENSGT00940000154997	ENSGT00940000154585.a	ENSGT01030000234638.b.b.c.b	ENSGT00390000014003	ENSGT00390000015874	ENSGT00390000012541	ENSGT00940000153662.B	ENSGT00940000160006	ENSGT00940000159243	ENSGT00390000016521	ENSGT00940000165378	ENSGT00940000159623	ENSGT00530000063749.c.b	ENSGT00390000004950	ENSGT00940000157873
Red fox	MODERN SPECIES	11	FAM174A (ENSVVUG00000020104)	ST8SIA4 (ENSVVUG00000020099)	SLCO4C1 (ENSVVUG00000020047)	ENSVVUG00000020035	SLCO6A1 (ENSVVUG00000020025)	PAM (ENSVVUG00000019687)	GIN1 (ENSVVUG00000019618)	PPIP5K2 (ENSVVUG00000013495)	CUNH5orf30 (ENSVVUG00000013357)	ENSVVUG00000013337	NUDT12 (ENSVVUG00000013331)	ENSVVUG00000013325	ENSVVUG00000013293	ENSVVUG00000013288	EFNA5 (ENSVVUG00000013271)	ENSVVUG00000013248 #22	ENSVVUG00000013246	ENSVVUG00000013220	FER (ENSVVUG00000013141)	PJA2 (ENSVVUG00000013092)	MAN2A1 (ENSVVUG00000013038)	ENSVVUG00000013011	TMEM232 (ENSVVUG00000012986)	SLC25A46 (ENSVVUG00000012972)	TSLP (ENSVVUG00000012958)	WDR36 (ENSVVUG00000012684)	CAMK4 (ENSVVUG00000012620)	STARD4 (ENSVVUG00000012606)	EPB41L4A (ENSVVUG00000012521)	APC (ENSVVUG00000012447)	SRP19 (ENSVVUG00000012423)
Canis_lupus	DUPLICATION
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000156579	ENSGT00390000017282.o	ENSGT00730000111385	ENSGT01030000234535.F.b	ENSGT01080000257410.D.c	ENSGT01080000257410.D.d	ENSGT00940000156369	ENSGT00940000160670	ENSGT00390000009048.a.b	ENSGT00390000005782	ENSGT00530000064469	ENSGT00940000157592	ENSGT00390000001830.j	ENSGT00940000157299	ENSGT00940000156973	ENSGT00730000111212.q.a #22	ENSGT00940000154997	ENSGT00940000154585.a	ENSGT01030000234638.b.b.c.b	ENSGT00390000014003	ENSGT00390000015874	ENSGT00390000012541	ENSGT00940000153662.B	ENSGT00940000160006	ENSGT00940000159243	ENSGT00390000016521	ENSGT00940000165378	ENSGT00940000159623	ENSGT00530000063749.c.b	ENSGT00390000004950.hb.a	ENSGT00940000157873
Dingo	MODERN SPECIES	138	PAM (ENSCAFG00020012061)	GIN1 (ENSCAFG00020012078)	PPIP5K2 (ENSCAFG00020012160)	MACIR (ENSCAFG00020012590)	ENSCAFG00020012597	ENSCAFG00020012606	NUDT12 (ENSCAFG00020012607)	ENSCAFG00020012617	ENSCAFG00020012622	ENSCAFG00020012646	ENSCAFG00020012662	ENSCAFG00020012690	ENSCAFG00020012708	EFNA5 (ENSCAFG00020012730)	FBXL17 (ENSCAFG00020012795)	ENSCAFG00020012800 #22	ENSCAFG00020012804	ENSCAFG00020012810	FER (ENSCAFG00020012851)	PJA2 (ENSCAFG00020012927)	MAN2A1 (ENSCAFG00020012979)	TMEM232 (ENSCAFG00020013399)	SLC25A46 (ENSCAFG00020013422)	TSLP (ENSCAFG00020013428)	WDR36 (ENSCAFG00020013444)	CAMK4 (ENSCAFG00020013830)	STARD4 (ENSCAFG00020014160)	ENSCAFG00020014167	EPB41L4A (ENSCAFG00020014184)	APC (ENSCAFG00020014204)	ENSCAFG00020014267
Dog	MODERN SPECIES	22	CHD1 (ENSCAFG00845002210)	ENSCAFG00845002178	FAM174A (ENSCAFG00845002170)	ST8SIA4 (ENSCAFG00845002101)	SLCO4C1 (ENSCAFG00845002027)	SLCO6A1 (ENSCAFG00845001964)	PAM (ENSCAFG00845001601)	GIN1 (ENSCAFG00845001384)	PPIP5K2 (ENSCAFG00845001037)	MACIR (ENSCAFG00845000857)	ENSCAFG00845000832	NUDT12 (ENSCAFG00845000770)	ENSCAFG00845000704	ENSCAFG00845000582	EFNA5 (ENSCAFG00845000512)	LSM8 (ENSCAFG00845000484) #22	FBXL17 (ENSCAFG00845000464)	FER (ENSCAFG00845000339)	PJA2 (ENSCAFG00845000212)	MAN2A1 (ENSCAFG00845004163)	TMEM232 (ENSCAFG00845003944)	SLC25A46 (ENSCAFG00845003894)	ENSCAFG00845003872	WDR36 (ENSCAFG00845003859)	CAMK4 (ENSCAFG00845003821)	STARD4 (ENSCAFG00845003796)	NREP (ENSCAFG00845003745)	ENSCAFG00845003705	EPB41L4A (ENSCAFG00845003607)	APC (ENSCAFG00845003519)	SRP19 (ENSCAFG00845003444)
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022.a #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212.q.b #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216.q.a #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163928 #36	ENSGT00940000163382	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
Dingo	MODERN SPECIES	288	ENSCAFG00020007266 #9	MDFIC (ENSCAFG00020007307) #10	ENSCAFG00020007316	TFEC (ENSCAFG00020007323) #11	TES (ENSCAFG00020007337) #12	ENSCAFG00020007342	CAV2 (ENSCAFG00020007355) #13	CAV1 (ENSCAFG00020007358) #14	MET (ENSCAFG00020007371) #15	CAPZA2 (ENSCAFG00020007382) #16	ST7 (ENSCAFG00020007405) #17	WNT2 (ENSCAFG00020007444) #18	ASZ1 (ENSCAFG00020007449) #19	CFTR (ENSCAFG00020007486) #20	CTTNBP2 (ENSCAFG00020007530) #21	ENSCAFG00020007643 #22	ENSCAFG00020007647 #23	ENSCAFG00020007658	TSPAN12 (ENSCAFG00020007671) #27	ENSCAFG00020007677 #28	ENSCAFG00020007679 #29
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00730000111212.r #22
Dog	MODERN SPECIES	5	BMT2 (ENSCAFG00845030359)	GPR85 (ENSCAFG00845005755)	PPP1R3A (ENSCAFG00845005952) #8	FOXP2 (ENSCAFG00845006016) #9	MDFIC (ENSCAFG00845006114) #10	TFEC (ENSCAFG00845006297) #11	TES (ENSCAFG00845006418) #12	CAV2 (ENSCAFG00845006745) #13	CAV1 (ENSCAFG00845006847) #14	MET (ENSCAFG00845007244) #15	CAPZA2 (ENSCAFG00845007934) #16	ST7 (ENSCAFG00845008329) #17	WNT2 (ENSCAFG00845008849) #18	ASZ1 (ENSCAFG00845008921) #19	CFTR (ENSCAFG00845009171) #20	ENSCAFG00845010283 #22	ENSCAFG00845010332 #23	ENSCAFG00845010446 #26	TSPAN12 (ENSCAFG00845010513) #27	ING3 (ENSCAFG00845010632) #28	CPED1 (ENSCAFG00845010739) #29	WNT16 (ENSCAFG00845010924) #30	FAM3C (ENSCAFG00845010960) #31	PTPRZ1 (ENSCAFG00845012086) #32	AASS (ENSCAFG00845014560) #33	CADPS2 (ENSCAFG00845014715) #35	SLC13A1 (ENSCAFG00845014948)	ENSCAFG00845015049
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099	ENSGT00940000157073
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099	ENSGT00940000157073
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326	ENSGT00390000008099	ENSGT00940000157073
Elephant	MODERN SPECIES	428	PPP1R3A (ENSLAFG00000009257) #8	FOXP2 (ENSLAFG00000012661) #9	MDFIC (ENSLAFG00000013504) #10	ENSLAFG00000017267 #11	ENSLAFG00000031865 #11	TES (ENSLAFG00000017268) #12	CAV2 (ENSLAFG00000015065) #13	CAV1 (ENSLAFG00000028864) #14	MET (ENSLAFG00000011703) #15	CAPZA2 (ENSLAFG00000007766) #16	ST7 (ENSLAFG00000016129) #17	WNT2 (ENSLAFG00000022699) #18	ASZ1 (ENSLAFG00000005746) #19	CFTR (ENSLAFG00000005753) #20	CTTNBP2 (ENSLAFG00000005761) #21	LSM8 (ENSLAFG00000011242) #22	ENSLAFG00000011244 #23	KCND2 (ENSLAFG00000008593) #26	TSPAN12 (ENSLAFG00000004689) #27	ING3 (ENSLAFG00000030488) #28	ENSLAFG00000032200 #29	ENSLAFG00000005279 #29	WNT16 (ENSLAFG00000010025) #30	FAM3C (ENSLAFG00000010029) #31	PTPRZ1 (ENSLAFG00000004565) #32	AASS (ENSLAFG00000004573) #33	FEZF1 (ENSLAFG00000013550) #34	CADPS2 (ENSLAFG00000013553) #35	SLC13A1 (ENSLAFG00000005670)	IQUB (ENSLAFG00000002619)	NDUFA5 (ENSLAFG00000030971)
Tenrec	MODERN SPECIES	2532																LSM8 (ENSETEG00000011594) #22	ENSETEG00000011595 #23
Xenarthra	ANCESTRAL SPECIES	1822																ENSGT00730000111212 #22	ENSGT00940000161777.b #23
Armadillo	MODERN SPECIES	4550													CTTNBP2 (ENSDNOG00000001656) #21	ENSDNOG00000005117	ENSDNOG00000037877	LSM8 (ENSDNOG00000034613) #22	ENSDNOG00000040318 #23
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000161777.a ##23	ENSGT00940000153661.b	ENSGT00940000161777.b #23	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163928 #36	ENSGT00940000163382
Opossum	MODERN SPECIES	7	ENSMODG00000046094	MDFIC (ENSMODG00000015856) #10	ENSMODG00000038037	ENSMODG00000045482	ENSMODG00000015845 #11	TES (ENSMODG00000015840) #12	CAV2 (ENSMODG00000047495) #13	CAV1 (ENSMODG00000015826) #14	MET (ENSMODG00000015822) #15	CAPZA2 (ENSMODG00000041408) #16	ST7 (ENSMODG00000015806) #17	WNT2 (ENSMODG00000015792) #18	ASZ1 (ENSMODG00000015784) #19	CFTR (ENSMODG00000015771) #20	CTTNBP2 (ENSMODG00000015754) #21	LSM8 (ENSMODG00000015729) #22	ENSMODG00000015735	ENSMODG00000027321	ENSMODG00000015525 ##23	ENSMODG00000024541	ENSMODG00000042953	ENSMODG00000015511	ENSMODG00000015504 #23	ENSMODG00000044091	ENSMODG00000043163	KCND2 (ENSMODG00000024535) #26	TSPAN12 (ENSMODG00000015495) #27	ING3 (ENSMODG00000015490) #28	ENSMODG00000015486 #29	ENSMODG00000039477	ENSMODG00000038957 #29
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b.c #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661.b.f	ENSGT00940000161777.a.i.a ##23	ENSGT00940000153661.b.e.b	ENSGT00940000161777.b #23
Diprotodontia	ANCESTRAL SPECIES	16	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b.c #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661.b.f	ENSGT00940000161777.a.i.a ##23	ENSGT00940000153661.b.e.b	ENSGT00940000161777.b #23
Diprotodontia_a	ANCESTRAL SPECIES	18	ENSGT00950000182989.D.a.b.i.b	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b.c #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661.b.f	ENSGT00940000161777.a.i.a ##23	ENSGT00940000153661.b.e.b.c	ENSGT00940000161777.b #23
Common wonbat	MODERN SPECIES	1132	TES (ENSVURG00010020012) #12	CAV2 (ENSVURG00010020019) #13	CAV1 (ENSVURG00010020024) #14	MET (ENSVURG00010020038) #15	ENSVURG00010020055	ENSVURG00010020061	ENSVURG00010020064	CAPZA2 (ENSVURG00010020077) #16	ENSVURG00010020091	ST7 (ENSVURG00010020104) #17	WNT2 (ENSVURG00010020146) #18	ASZ1 (ENSVURG00010020160) #19	CFTR (ENSVURG00010020201) #20	CTTNBP2 (ENSVURG00010020262) #21	ENSVURG00010020288	LSM8 (ENSVURG00010020298) #22	ENSVURG00010020323
koala	MODERN SPECIES	281											ENSPCIG00000005245 #17	WNT2 (ENSPCIG00000005279) #18	ASZ1 (ENSPCIG00000005288) #19	CFTR (ENSPCIG00000005433) #20	CTTNBP2 (ENSPCIG00000006837) #21	LSM8 (ENSPCIG00000021467) #22	ENSPCIG00000021462	ENSPCIG00000021456	ENSPCIG00000033667	ENSPCIG00000021455	ENSPCIG00000021445	ENSPCIG00000036743	ENSPCIG00000021444 #23
Wallaby	MODERN SPECIES	1709																LSM8 (ENSMEUG00000007801) #22
Tasmanian devil	MODERN SPECIES	4	PPP1R3A (ENSSHAG00000017954) #8	FOXP2 (ENSSHAG00000018566) #9	MDFIC (ENSSHAG00000018830) #10	ENSSHAG00000010737	TFEC (ENSSHAG00000012198) #11	TES (ENSSHAG00000013689) #12	ENSSHAG00000020716 #13	CAV1 (ENSSHAG00000030626) #14	MET (ENSSHAG00000015881) #15	CAPZA2 (ENSSHAG00000022040) #16	ST7 (ENSSHAG00000016896) #17	WNT2 (ENSSHAG00000017186) #18	ASZ1 (ENSSHAG00000017307) #19	CFTR (ENSSHAG00000030052) #20	CTTNBP2 (ENSSHAG00000017847) #21	LSM8 (ENSSHAG00000023318) #22	ENSSHAG00000018617	ENSSHAG00000026856	ENSSHAG00000018547	KCND2 (ENSSHAG00000007231) #26	TSPAN12 (ENSSHAG00000012139) #27	ING3 (ENSSHAG00000013063) #28	CPED1 (ENSSHAG00000013416) #29	WNT16 (ENSSHAG00000027699) #30	ENSSHAG00000015103 #31	PTPRZ1 (ENSSHAG00000016799) #32	AASS (ENSSHAG00000017254) #33	FEZF1 (ENSSHAG00000001391) #34	CADPS2 (ENSSHAG00000002469) #35	RNF133 (ENSSHAG00000008983) #36	RNF148 (ENSSHAG00000009015)
Platypus	MODERN SPECIES	1	ENSOANG00000001554 #8	ENSOANG00000041865	FOXP2 (ENSOANG00000001697) #9	MDFIC (ENSOANG00000044059) #10	TFEC (ENSOANG00000014094) #11	TES (ENSOANG00000014092) #12	ENSOANG00000036116 #13	CAV1 (ENSOANG00000048557) #14	MET (ENSOANG00000015031) #15	CAPZA2 (ENSOANG00000038071) #16	ST7 (ENSOANG00000008765) #17	WNT2 (ENSOANG00000008766) #18	ASZ1 (ENSOANG00000031342) #19	CFTR (ENSOANG00000008767) #20	CTTNBP2 (ENSOANG00000021090) #21	LSM8 (ENSOANG00000049504) #22	ENSOANG00000008771	ENSOANG00000011984	ENSOANG00000039010 #26	TSPAN12 (ENSOANG00000049624) #27	ING3 (ENSOANG00000043175) #28	CPED1 (ENSOANG00000005654) #29	WNT16 (ENSOANG00000005655) #30	FAM3C (ENSOANG00000051321) #31	PTPRZ1 (ENSOANG00000004821) #32	AASS (ENSOANG00000004822) #33	FEZF1 (ENSOANG00000041502) #34	CADPS2 (ENSOANG00000004823) #35	RNF133 (ENSOANG00000015935) #36	ENSOANG00000039363	SLC13A1 (ENSOANG00000004824)
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00530000063540.a	ENSGT00940000159912	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29
Lepidosauria	ANCESTRAL SPECIES	31	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382.a	ENSGT00990000210432	ENSGT00940000163382.b	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a
Episquamata	ANCESTRAL SPECIES	3	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382.a	ENSGT00990000210432	ENSGT00940000163382.b	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216.a #29	ENSGT00390000015216.b #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00940000163382.a	ENSGT00940000163382.b	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a
Elapidae	ANCESTRAL SPECIES	6	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT01010000230279	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000153661	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216.a #29	ENSGT01000000221730	ENSGT00390000015216.b #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326
Indian cobra	MODERN SPECIES	10	MDFIC (ENSNNAG00000008115) #10	ENSNNAG00000008092	TFEC (ENSNNAG00000008043) #11	ENSNNAG00000008019	TES (ENSNNAG00000007976) #12	CAV2 (ENSNNAG00000007961) #13	CAV1 (ENSNNAG00000007947) #14	ENSNNAG00000007381 #15	ENSNNAG00000007335 #15	ENSNNAG00000007327 #15	CAPZA2 (ENSNNAG00000007317) #16	ST7 (ENSNNAG00000006862) #17	ASZ1 (ENSNNAG00000006732) #19	CFTR (ENSNNAG00000006666) #20	CTTNBP2 (ENSNNAG00000006600) #21	LSM8 (ENSNNAG00000006583) #22	ENSNNAG00000006556	ENSNNAG00000006538	KCND2 (ENSNNAG00000006526) #26	TSPAN12 (ENSNNAG00000006500) #27	ING3 (ENSNNAG00000006488) #28	ENSNNAG00000006479	ENSNNAG00000006451 #29	WNT16 (ENSNNAG00000006418) #30	FAM3C (ENSNNAG00000006396) #31	PTPRZ1 (ENSNNAG00000006362) #32	AASS (ENSNNAG00000006311) #33	FEZF1 (ENSNNAG00000006291) #34	ENSNNAG00000006281	ENSNNAG00000006263	ENSNNAG00000006247
Elapidae_a	ANCESTRAL SPECIES	61	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT01010000230279	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b.a #17	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216.a #29	ENSGT01000000221730	ENSGT00390000015216.b #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326
Acanthophiinae	ANCESTRAL SPECIES	57	ENSGT00890000139436.B	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT01010000230279	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b.a #17	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00940000153661	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216.a #29	ENSGT01000000221730	ENSGT00390000015216.b #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a
Mainland tiger snake	MODERN SPECIES	26	GPR85 (ENSNSUG00000013171)	ENSNSUG00000013170 #8	FOXP2 (ENSNSUG00000013169) #9	MDFIC (ENSNSUG00000013168) #10	TFEC (ENSNSUG00000013167) #11	ENSNSUG00000013166	TES (ENSNSUG00000013165) #12	CAV2 (ENSNSUG00000013164) #13	CAV1 (ENSNSUG00000013163) #14	MET (ENSNSUG00000012872) #15	CAPZA2 (ENSNSUG00000012669) #16	ST7 (ENSNSUG00000012058) #17	ENSNSUG00000012057 #19	CFTR (ENSNSUG00000012053) #20	CTTNBP2 (ENSNSUG00000012041) #21	LSM8 (ENSNSUG00000012040) #22	ENSNSUG00000012038	ENSNSUG00000012035	ENSNSUG00000012034	KCND2 (ENSNSUG00000012032) #26	TSPAN12 (ENSNSUG00000012031) #27	ING3 (ENSNSUG00000012030) #28	ENSNSUG00000012029	CPED1 (ENSNSUG00000012028) #29	WNT16 (ENSNSUG00000012027) #30	FAM3C (ENSNSUG00000012026) #31	PTPRZ1 (ENSNSUG00000012025) #32	AASS (ENSNSUG00000011865) #33	FEZF1 (ENSNSUG00000011831) #34	ENSNSUG00000011827	ENSNSUG00000011825
Eastern brown snake	MODERN SPECIES	58	TMEM168 (ENSPTXG00000011878)	BMT2 (ENSPTXG00000011877)	GPR85 (ENSPTXG00000011876)	PPP1R3A (ENSPTXG00000011875) #8	FOXP2 (ENSPTXG00000011565) #9	MDFIC (ENSPTXG00000011560) #10	ENSPTXG00000011556	TES (ENSPTXG00000011554) #12	CAV1 (ENSPTXG00000011551) #14	MET (ENSPTXG00000011531) #15	CAPZA2 (ENSPTXG00000011530) #16	ST7 (ENSPTXG00000010536) #17	ASZ1 (ENSPTXG00000010523) #19	CFTR (ENSPTXG00000010072) #20	CTTNBP2 (ENSPTXG00000010062) #21	LSM8 (ENSPTXG00000010061) #22	ENSPTXG00000010059	ENSPTXG00000010051	ENSPTXG00000010050 #26	TSPAN12 (ENSPTXG00000010049) #27	ING3 (ENSPTXG00000010048) #28	ENSPTXG00000010047 #29	ENSPTXG00000010046 #29	WNT16 (ENSPTXG00000010045) #30	FAM3C (ENSPTXG00000010044) #31
Blue-lipped sea krait	MODERN SPECIES	9221																LSM8 (ENSLLTG00000015708) #22
Lizard	DUPLICATION
Lizard	MODERN SPECIES	4	TES (ENSACAG00000006611) #12	CAV2 (ENSACAG00000043538) #13	CAV1 (ENSACAG00000006576) #14	MET (ENSACAG00000008309) #15	CAPZA2 (ENSACAG00000008196) #16	ST7 (ENSACAG00000008154) #17	ASZ1 (ENSACAG00000008056) #19	CFTR (ENSACAG00000007652) #20	ENSACAG00000039700	ENSACAG00000037242	ENSACAG00000035958	ENSACAG00000037108 #21	ENSACAG00000040576	ENSACAG00000007252 #21	ENSACAG00000039034	ENSACAG00000037922 #22	ENSACAG00000007246	ENSACAG00000041568 #22	ENSACAG00000007208	KCND2 (ENSACAG00000007207) #26	TSPAN12 (ENSACAG00000007124) #27	ENSACAG00000007094	ING3 (ENSACAG00000007047) #28	CPED1 (ENSACAG00000007000) #29	ENSACAG00000044040	MLC1 (ENSACAG00000002373)	MOV10L1 (ENSACAG00000002357)	PANX2 (ENSACAG00000002347)	ENSACAG00000027919	TRABD (ENSACAG00000002304)	SELENOO (ENSACAG00000002256)
Lizard	MODERN SPECIES	4	CAV1 (ENSACAG00000006576) #14	MET (ENSACAG00000008309) #15	CAPZA2 (ENSACAG00000008196) #16	ST7 (ENSACAG00000008154) #17	ASZ1 (ENSACAG00000008056) #19	CFTR (ENSACAG00000007652) #20	ENSACAG00000039700	ENSACAG00000037242	ENSACAG00000035958	ENSACAG00000037108 #21	ENSACAG00000040576	ENSACAG00000007252 #21	ENSACAG00000039034	ENSACAG00000037922 #22	ENSACAG00000007246	ENSACAG00000041568 #22	ENSACAG00000007208	KCND2 (ENSACAG00000007207) #26	TSPAN12 (ENSACAG00000007124) #27	ENSACAG00000007094	ING3 (ENSACAG00000007047) #28	CPED1 (ENSACAG00000007000) #29	ENSACAG00000044040	MLC1 (ENSACAG00000002373)	MOV10L1 (ENSACAG00000002357)	PANX2 (ENSACAG00000002347)	ENSACAG00000027919	TRABD (ENSACAG00000002304)	SELENOO (ENSACAG00000002256)	ENSACAG00000037139	TUBGCP6 (ENSACAG00000002182)
Laterata	ANCESTRAL SPECIES																	ENSGT00730000111212 #22
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000005354	SYT13 (ENSSMRG00000005208)	PRDM11 (ENSSMRG00000005163)	TP53I11 (ENSSMRG00000005157)	TSPAN18 (ENSSMRG00000005149)	ENSSMRG00000005143	ENSSMRG00000005130	ENSSMRG00000005121	ALX4 (ENSSMRG00000005074)	EXT2 (ENSSMRG00000005057)	ENSSMRG00000005022	C11orf96 (ENSSMRG00000005018)	ALKBH3 (ENSSMRG00000005011)	HSD17B12 (ENSSMRG00000004956)	TTC17 (ENSSMRG00000004923)	LSM8 (ENSSMRG00000004921) #22	ATP6V1F (ENSSMRG00000004918)	ATP6V1FNB (ENSSMRG00000004909)	API5 (ENSSMRG00000004889)	ENSSMRG00000004867	ENSSMRG00000004858	ENSSMRG00000004851	LRRC4C (ENSSMRG00000004842)	ENSSMRG00000004832	RAG2 (ENSSMRG00000004809)	RAG1 (ENSSMRG00000004802)	TRAF6 (ENSSMRG00000004731)	PRR5L (ENSSMRG00000004714)	COMMD9 (ENSSMRG00000004711)	LDLRAD3 (ENSSMRG00000004689)	TRIM44 (ENSSMRG00000004604)
Common wall lizard	MODERN SPECIES	7	ENSPMRG00000016806	ENSPMRG00000016686	RTN4R (ENSPMRG00000016653)	PXMP2 (ENSPMRG00000016641)	POLE (ENSPMRG00000015970)	P2RX2 (ENSPMRG00000015686)	ENSPMRG00000015647	PLA2G3 (ENSPMRG00000015620)	INPP5J (ENSPMRG00000015591)	SELENOM (ENSPMRG00000015581)	ENSPMRG00000015553	ENSPMRG00000015537	MORC2 (ENSPMRG00000015489)	ENSPMRG00000015464	ENSPMRG00000015463	LSM8 (ENSPMRG00000015458) #22	ENSPMRG00000015457	OSBP2 (ENSPMRG00000015377)	DUSP21 (ENSPMRG00000015334)	ENSPMRG00000015330	SLC35E4 (ENSPMRG00000023743)	TCN2 (ENSPMRG00000023740)	PES1 (ENSPMRG00000023737)	MTFP1 (ENSPMRG00000023735)	SEC14L2 (ENSPMRG00000023732)	RNF215 (ENSPMRG00000023730)	CCDC157 (ENSPMRG00000023727)	SF3A1 (ENSPMRG00000023723)	RHBDD3 (ENSPMRG00000023720)	EWSR1 (ENSPMRG00000023713)	GAS2L1 (ENSPMRG00000023710)
tuatara	MODERN SPECIES	1016				TFEC (ENSSPUG00000017062) #11	TES (ENSSPUG00000017069) #12	ENSSPUG00000017076 #13	ENSSPUG00000017079 #13	CAV1 (ENSSPUG00000017094) #14	MET (ENSSPUG00000017105) #15	ENSSPUG00000017153 #16	ST7 (ENSSPUG00000017257) #17	WNT2 (ENSSPUG00000017330) #18	ASZ1 (ENSSPUG00000017359) #19	CFTR (ENSSPUG00000017373) #20	CTTNBP2 (ENSSPUG00000017397) #21	LSM8 (ENSSPUG00000017419) #22	ENSSPUG00000017445	DPH7 (ENSSPUG00000017505)	PNPLA7 (ENSSPUG00000017551)
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000158685 #10	ENSGT01000000221197	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382.a	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT01000000221197	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382.a	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287
Chinese turtle	MODERN SPECIES	1049	ENSPSIG00000001315	ENSPSIG00000001319	FOXP2 (ENSPSIG00000013338) #9	MDFIC (ENSPSIG00000015133) #10	ENSPSIG00000001329	TFEC (ENSPSIG00000015144) #11	TES (ENSPSIG00000015274) #12	CAV2 (ENSPSIG00000015283) #13	MET (ENSPSIG00000015326) #15	CAPZA2 (ENSPSIG00000016176) #16	ST7 (ENSPSIG00000016187) #17	WNT2 (ENSPSIG00000016584) #18	ASZ1 (ENSPSIG00000016815) #19	CFTR (ENSPSIG00000016860) #20	CTTNBP2 (ENSPSIG00000017035) #21	LSM8 (ENSPSIG00000017054) #22	ENSPSIG00000017066	ENSPSIG00000017169	ENSPSIG00000017191	ENSPSIG00000001336	KCND2 (ENSPSIG00000006329) #26	ENSPSIG00000001347	ENSPSIG00000006333	TSPAN12 (ENSPSIG00000006353) #27	ING3 (ENSPSIG00000006786) #28	CPED1 (ENSPSIG00000006819) #29	WNT16 (ENSPSIG00000007055) #30	FAM3C (ENSPSIG00000007088) #31	PTPRZ1 (ENSPSIG00000007851) #32	AASS (ENSPSIG00000008076) #33	FEZF1 (ENSPSIG00000009843) #34
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT01000000221197	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382.a	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287
Emydidae	ANCESTRAL SPECIES	10	ENSGT00400000023684 #7	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382.a	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
painted turtle	MODERN SPECIES	7	PPP1R3A (ENSCPBG00000007087) #8	FOXP2 (ENSCPBG00000007098) #9	MDFIC (ENSCPBG00000007111) #10	TFEC (ENSCPBG00000007125) #11	TES (ENSCPBG00000007139) #12	CAV2 (ENSCPBG00000007156) #13	CAV1 (ENSCPBG00000007159) #14	MET (ENSCPBG00000007168) #15	CAPZA2 (ENSCPBG00000007179) #16	ST7 (ENSCPBG00000007194) #17	WNT2 (ENSCPBG00000007227) #18	ASZ1 (ENSCPBG00000007263) #19	CFTR (ENSCPBG00000007379) #20	ENSCPBG00000008123 #21	ENSCPBG00000008135 #21	LSM8 (ENSCPBG00000008154) #22	ENSCPBG00000008183	ENSCPBG00000008248	ENSCPBG00000008257	KCND2 (ENSCPBG00000008266) #26	ENSCPBG00000008270	TSPAN12 (ENSCPBG00000008296) #27	ING3 (ENSCPBG00000008307) #28	ENSCPBG00000008316 #29	WNT16 (ENSCPBG00000008323) #30	FAM3C (ENSCPBG00000008326) #31	PTPRZ1 (ENSCPBG00000008360) #32	AASS (ENSCPBG00000008417) #33	FEZF1 (ENSCPBG00000008446) #34	CADPS2 (ENSCPBG00000008933) #35	RNF148 (ENSCPBG00000020629)
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT01000000221197	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382.a	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005020029	FOXP2 (ENSGEVG00005020076) #9	MDFIC (ENSGEVG00005020132) #10	ENSGEVG00005020137	TFEC (ENSGEVG00005020144) #11	TES (ENSGEVG00005020153) #12	CAV2 (ENSGEVG00005020161) #13	CAV1 (ENSGEVG00005020165) #14	MET (ENSGEVG00005020173) #15	CAPZA2 (ENSGEVG00005020187) #16	ENSGEVG00005020193	ST7 (ENSGEVG00005020215) #17	WNT2 (ENSGEVG00005020248) #18	ASZ1 (ENSGEVG00005020255) #19	CFTR (ENSGEVG00005020286) #20	LSM8 (ENSGEVG00005020340) #22	ENSGEVG00005020349	KCND2 (ENSGEVG00005020370) #26	TSPAN12 (ENSGEVG00005020373) #27	ING3 (ENSGEVG00005020379) #28	ENSGEVG00005020382 #29	ENSGEVG00005020385 #29	WNT16 (ENSGEVG00005020388) #30	FAM3C (ENSGEVG00005020393) #31	PTPRZ1 (ENSGEVG00005020397) #32	AASS (ENSGEVG00005020403) #33	FEZF1 (ENSGEVG00005020406) #34	CADPS2 (ENSGEVG00005020416) #35	RNF148 (ENSGEVG00005020434)	ENSGEVG00005020438	ENSGEVG00005020458
Abingdon island giant tortoise	MODERN SPECIES	1174																LSM8 (ENSCABG00000002488) #22	ENSCABG00000002485	ENSCABG00000002484
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000158685 #10	ENSGT01000000221197	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT00940000163382.a	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326
Aves	ANCESTRAL SPECIES	1	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT01030000238252	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Japanese quail	MODERN SPECIES		PPP1R3A (ENSCJPG00005013360) #8	ENSCJPG00005013359	FOXP2 (ENSCJPG00005012184) #9	MDFIC (ENSCJPG00005012181) #10	TFEC (ENSCJPG00005012178) #11	TES (ENSCJPG00005012177) #12	CAV2 (ENSCJPG00005012172) #13	CAV1 (ENSCJPG00005012171) #14	MET (ENSCJPG00005012168) #15	CAPZA2 (ENSCJPG00005012167) #16	ST7 (ENSCJPG00005012165) #17	WNT2 (ENSCJPG00005012164) #18	ASZ1 (ENSCJPG00005012161) #19	CFTR (ENSCJPG00005012155) #20	CTTNBP2 (ENSCJPG00005012154) #21	LSM8 (ENSCJPG00005012150) #22	KCND2 (ENSCJPG00005012143) #26	TSPAN12 (ENSCJPG00005012142) #27	ING3 (ENSCJPG00005012141) #28	ENSCJPG00005012139 #29	ENSCJPG00005012137 #29	POT1 (ENSCJPG00005012128)	GPR37 (ENSCJPG00005012127)	ENSCJPG00005012120	ENSCJPG00005012118	SPAM1 (ENSCJPG00005012116)	ENSCJPG00005012113	WASL (ENSCJPG00005012112)	LMOD2 (ENSCJPG00005012111)	ASB15 (ENSCJPG00005012110)	NDUFA5 (ENSCJPG00005012109)
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00960000189792	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Chicken	MODERN SPECIES		ENSGALG00010001519	FOXP2 (ENSGALG00010001407) #9	MDFIC (ENSGALG00010001381) #10	TFEC (ENSGALG00010001219) #11	TES (ENSGALG00010001214) #12	CAV2 (ENSGALG00010001517) #13	CAV1 (ENSGALG00010002285) #14	MET (ENSGALG00010001514) #15	CAPZA2 (ENSGALG00010001501) #16	ENSGALG00010001492	ST7 (ENSGALG00010002280) #17	WNT2 (ENSGALG00010001486) #18	ASZ1 (ENSGALG00010001207) #19	CFTR (ENSGALG00010001202) #20	CTTNBP2 (ENSGALG00010001200) #21	LSM8 (ENSGALG00010001456) #22	ANKRD26 (ENSGALG00010001443)	ENSGALG00010001421	KCND2 (ENSGALG00010001419) #26	TSPAN12 (ENSGALG00010001232) #27	ING3 (ENSGALG00010001349) #28	CPED1 (ENSGALG00010001320) #29	WNT16 (ENSGALG00010001305) #30	FAM3C (ENSGALG00010001264) #31	PTPRZ1 (ENSGALG00010001248) #32	AASS (ENSGALG00010001234) #33	ENSGALG00010001236	FEZF1 (ENSGALG00010001917) #34	CADPS2 (ENSGALG00010001745) #35	SLC13A1 (ENSGALG00010001714)	ATP6AP1 (ENSGALG00010001712)
Turkey	MODERN SPECIES		ENSMGAG00000020288	PPP1R3A (ENSMGAG00000009058) #8	FOXP2 (ENSMGAG00000008987) #9	MDFIC (ENSMGAG00000008984) #10	TFEC (ENSMGAG00000008979) #11	TES (ENSMGAG00000008969) #12	ENSMGAG00000017183	CAV1 (ENSMGAG00000008967) #14	ENSMGAG00000017415	MET (ENSMGAG00000008925) #15	CAPZA2 (ENSMGAG00000008904) #16	ST7 (ENSMGAG00000008883) #17	WNT2 (ENSMGAG00000008863) #18	ASZ1 (ENSMGAG00000008859) #19	CFTR (ENSMGAG00000008826) #20	LSM8 (ENSMGAG00000008808) #22	ENSMGAG00000008756	ENSMGAG00000016570	ENSMGAG00000018388 #26	ENSMGAG00000015683	TSPAN12 (ENSMGAG00000008725) #27	ING3 (ENSMGAG00000008695) #28	ENSMGAG00000021432	CPED1 (ENSMGAG00000008745) #29	WNT16 (ENSMGAG00000008679) #30	FAM3C (ENSMGAG00000008660) #31	PTPRZ1 (ENSMGAG00000008579) #32	AASS (ENSMGAG00000008535) #33	FEZF1 (ENSMGAG00000008529) #34	CADPS2 (ENSMGAG00000008495) #35	SLC13A1 (ENSMGAG00000008451)
Anatidae	ANCESTRAL SPECIES	14	ENSGT00940000166634	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a
Pink-footed goose	MODERN SPECIES	26	ENSABRG00000005840	ENSABRG00000005855 #9	FOXP2 (ENSABRG00000005866) #9	MDFIC (ENSABRG00000005916) #10	TFEC (ENSABRG00000005925) #11	TES (ENSABRG00000005946) #12	CAV2 (ENSABRG00000005970) #13	CAV1 (ENSABRG00000005979) #14	MET (ENSABRG00000005986) #15	CAPZA2 (ENSABRG00000006030) #16	ST7 (ENSABRG00000006054) #17	WNT2 (ENSABRG00000006091) #18	ASZ1 (ENSABRG00000006101) #19	CFTR (ENSABRG00000006122) #20	CTTNBP2 (ENSABRG00000006157) #21	LSM8 (ENSABRG00000006189) #22
Duck	MODERN SPECIES		SLC13A1 (ENSAPLG00000013575)	ENSAPLG00000014404 #35	ENSAPLG00000031194 #35	FEZF1 (ENSAPLG00000015055) #34	AASS (ENSAPLG00000015230) #33	PTPRZ1 (ENSAPLG00000015904) #32	FAM3C (ENSAPLG00000016245) #31	WNT16 (ENSAPLG00000030369) #30	CPED1 (ENSAPLG00000000584) #29	ING3 (ENSAPLG00000002016) #28	TSPAN12 (ENSAPLG00000002596) #27	ENSAPLG00000021328	ENSAPLG00000031003 #26	ENSAPLG00000017686	ENSAPLG00000027810	LSM8 (ENSAPLG00000005115) #22	ENSAPLG00000004753	CTTNBP2 (ENSAPLG00000010400) #21	CFTR (ENSAPLG00000011156) #20	ENSAPLG00000029683	WNT2 (ENSAPLG00000003242) #18	ST7 (ENSAPLG00000010396) #17	CAPZA2 (ENSAPLG00000021156) #16	MET (ENSAPLG00000010894) #15	CAV1 (ENSAPLG00000001978) #14	CAV2 (ENSAPLG00000026342) #13	TES (ENSAPLG00000012062) #12	TFEC (ENSAPLG00000012143) #11	MDFIC (ENSAPLG00000012299) #10	FOXP2 (ENSAPLG00000012306) #9	ENSAPLG00000016789 #9
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216.l #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Golden eagle	MODERN SPECIES	21	ENSACCG00020013550 #9	FOXP2 (ENSACCG00020013527) #9	MDFIC (ENSACCG00020013495) #10	TFEC (ENSACCG00020013475) #11	ENSACCG00020013448	TES (ENSACCG00020013418) #12	CAV2 (ENSACCG00020013411) #13	CAV1 (ENSACCG00020013402) #14	MET (ENSACCG00020013383) #15	CAPZA2 (ENSACCG00020013367) #16	ST7 (ENSACCG00020013343) #17	WNT2 (ENSACCG00020013296) #18	ENSACCG00020013258 #19	CFTR (ENSACCG00020013240) #20	CTTNBP2 (ENSACCG00020013195) #21	LSM8 (ENSACCG00020013148) #22	ENSACCG00020013129	ENSACCG00020013093	KCND2 (ENSACCG00020013078) #26	TSPAN12 (ENSACCG00020013048) #27	ING3 (ENSACCG00020013015) #28	CPED1 (ENSACCG00020012968) #29	WNT16 (ENSACCG00020012907) #30	FAM3C (ENSACCG00020012884) #31	ENSACCG00020012828	PTPRZ1 (ENSACCG00020012691) #32	AASS (ENSACCG00020012632) #33	FEZF1 (ENSACCG00020012596) #34	CADPS2 (ENSACCG00020012430) #35	ENSACCG00020012332	ENSACCG00020012300
Kakapo	MODERN SPECIES	20	FOXP2 (ENSSHBG00005010906) #9	MDFIC (ENSSHBG00005010864) #10	TFEC (ENSSHBG00005010824) #11	TES (ENSSHBG00005010796) #12	CAV2 (ENSSHBG00005010753) #13	CAV1 (ENSSHBG00005010735) #14	MET (ENSSHBG00005009888) #15	CAPZA2 (ENSSHBG00005009748) #16	ST7 (ENSSHBG00005009717) #17	WNT2 (ENSSHBG00005009667) #18	ASZ1 (ENSSHBG00005009632) #19	CFTR (ENSSHBG00005009547) #20	ENSSHBG00005009503	ENSSHBG00005009496 #21	ENSSHBG00005009480 #21	LSM8 (ENSSHBG00005009461) #22	ENSSHBG00005009388	ENSSHBG00005009348 #23	ENSSHBG00005009339	KCND2 (ENSSHBG00005009311) #26	TSPAN12 (ENSSHBG00005009282) #27	ING3 (ENSSHBG00005009270) #28	ENSSHBG00005009264 #29	CPED1 (ENSSHBG00005009250) #29	WNT16 (ENSSHBG00005009190) #30	ENSSHBG00005009160	FAM3C (ENSSHBG00005009145) #31	PTPRZ1 (ENSSHBG00005009048) #32	AASS (ENSSHBG00005008699) #33	FEZF1 (ENSSHBG00005008618) #34	CADPS2 (ENSSHBG00005003467) #35
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.a.b #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Great tit	MODERN SPECIES	10	PPP1R3A (ENSPMJG00000010574) #8	ENSPMJG00000010571 #9	FOXP2 (ENSPMJG00000010367) #9	MDFIC (ENSPMJG00000010365) #10	TFEC (ENSPMJG00000010298) #11	TES (ENSPMJG00000010232) #12	CAV2 (ENSPMJG00000010228) #13	CAV1 (ENSPMJG00000010227) #14	MET (ENSPMJG00000010222) #15	CAPZA2 (ENSPMJG00000010167) #16	ST7 (ENSPMJG00000010160) #17	WNT2 (ENSPMJG00000010142) #18	ASZ1 (ENSPMJG00000010138) #19	CFTR (ENSPMJG00000010133) #20	CTTNBP2 (ENSPMJG00000010132) #21	LSM8 (ENSPMJG00000010122) #22	ENSPMJG00000010120	ENSPMJG00000010089	ENSPMJG00000010076 #26	TSPAN12 (ENSPMJG00000010063) #27	ING3 (ENSPMJG00000010056) #28	CPED1 (ENSPMJG00000010048) #29	WNT16 (ENSPMJG00000010042) #30	FAM3C (ENSPMJG00000010041) #31	PTPRZ1 (ENSPMJG00000010040) #32	AASS (ENSPMJG00000010036) #33	FEZF1 (ENSPMJG00000010035) #34	CADPS2 (ENSPMJG00000010030) #35	SLC13A1 (ENSPMJG00000010001)	ENSPMJG00000009956	IQUB (ENSPMJG00000009955)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.a.a #12	ENSGT00940000155993.a.b #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Flycatcher	MODERN SPECIES	10	PPP1R3A (ENSFALG00000009525) #8	ENSFALG00000027247	FOXP2 (ENSFALG00000024389) #9	ENSFALG00000010139 #10	TFEC (ENSFALG00000025375) #11	TES (ENSFALG00000010124) #12	CAV2 (ENSFALG00000027178) #13	CAV1 (ENSFALG00000010117) #14	MET (ENSFALG00000010094) #15	CAPZA2 (ENSFALG00000025088) #16	ST7 (ENSFALG00000010057) #17	WNT2 (ENSFALG00000024891) #18	ASZ1 (ENSFALG00000010054) #19	CFTR (ENSFALG00000010051) #20	CTTNBP2 (ENSFALG00000010036) #21	LSM8 (ENSFALG00000023574) #22	ENSFALG00000025919	ENSFALG00000028483	ENSFALG00000026847	KCND2 (ENSFALG00000010001) #26	TSPAN12 (ENSFALG00000009987) #27	ING3 (ENSFALG00000009971) #28	CPED1 (ENSFALG00000009963) #29	WNT16 (ENSFALG00000025164) #30	FAM3C (ENSFALG00000028842) #31	PTPRZ1 (ENSFALG00000009943) #32	AASS (ENSFALG00000009936) #33	FEZF1 (ENSFALG00000009923) #34	CADPS2 (ENSFALG00000009915) #35	SLC13A1 (ENSFALG00000009911)	ENSFALG00000009908
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.a.a #12	ENSGT00940000155993.a.b #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Medium ground finch	MODERN SPECIES	27			FOXP2 (ENSGFOG00000008787) #9	MDFIC (ENSGFOG00000008858) #10	TFEC (ENSGFOG00000008861) #11	ENSGFOG00000008870 #12	ENSGFOG00000008873 #12	CAV2 (ENSGFOG00000008881) #13	CAV1 (ENSGFOG00000008885) #14	MET (ENSGFOG00000008894) #15	CAPZA2 (ENSGFOG00000008927) #16	ST7 (ENSGFOG00000008942) #17	WNT2 (ENSGFOG00000008973) #18	CFTR (ENSGFOG00000009036) #20	CTTNBP2 (ENSGFOG00000011589) #21	LSM8 (ENSGFOG00000011878) #22	ENSGFOG00000011895	TSPAN12 (ENSGFOG00000011959) #27	ING3 (ENSGFOG00000011963) #28	CPED1 (ENSGFOG00000011981) #29	WNT16 (ENSGFOG00000012022) #30	FAM3C (ENSGFOG00000012026) #31	PTPRZ1 (ENSGFOG00000012035) #32	AASS (ENSGFOG00000012070) #33	FEZF1 (ENSGFOG00000012083) #34	CADPS2 (ENSGFOG00000012153) #35	SLC13A1 (ENSGFOG00000012916)	ENSGFOG00000013259	IQUB (ENSGFOG00000013261)	NDUFA5 (ENSGFOG00000013262)	ENSGFOG00000013265
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000157682.B #8	ENSGT00940000166634	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993.a.b #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000166287	ENSGT00390000014326	ENSGT00390000008099
Zebra finch	MODERN SPECIES	11	ENSTGUG00000019142	FoxP2 (ENSTGUG00000005315) #9	MDFIC (ENSTGUG00000005311) #10	TFEC (ENSTGUG00000025154) #11	TES (ENSTGUG00000005272) #12	CAV2 (ENSTGUG00000028946) #13	CAV1 (ENSTGUG00000021482) #14	MET (ENSTGUG00000005136) #15	CAPZA2 (ENSTGUG00000021964) #16	ST7 (ENSTGUG00000005050) #17	ENSTGUG00000024421	WNT2 (ENSTGUG00000005016) #18	ASZ1 (ENSTGUG00000004962) #19	CFTR (ENSTGUG00000004828) #20	CTTNBP2 (ENSTGUG00000004732) #21	LSM8 (ENSTGUG00000028972) #22	ENSTGUG00000019694	KCND2 (ENSTGUG00000004691) #26	TSPAN12 (ENSTGUG00000004668) #27	ING3 (ENSTGUG00000004655) #28	CPED1 (ENSTGUG00000004646) #29	WNT16 (ENSTGUG00000025350) #30	FAM3C (ENSTGUG00000004613) #31	PTPRZ1 (ENSTGUG00000004543) #32	AASS (ENSTGUG00000004496) #33	FEZF1 (ENSTGUG00000004488) #34	CADPS2 (ENSTGUG00000004403) #35	SLC13A1 (ENSTGUG00000004349)	ENSTGUG00000004340	ENSTGUG00000004331	LMOD2 (ENSTGUG00000004327)
Common canary	MODERN SPECIES	6	PPP1R3A (ENSSCAG00000009300) #8	ENSSCAG00000009306	FOXP2 (ENSSCAG00000009355) #9	MDFIC (ENSSCAG00000009429) #10	TFEC (ENSSCAG00000009440) #11	TES (ENSSCAG00000009450) #12	CAV2 (ENSSCAG00000009464) #13	CAV1 (ENSSCAG00000009469) #14	MET (ENSSCAG00000009475) #15	CAPZA2 (ENSSCAG00000009492) #16	ST7 (ENSSCAG00000009507) #17	WNT2 (ENSSCAG00000009523) #18	ENSSCAG00000009534 #19	CFTR (ENSSCAG00000009670) #20	CTTNBP2 (ENSSCAG00000010165) #21	LSM8 (ENSSCAG00000000112) #22	ENSSCAG00000000121	ENSSCAG00000000133	KCND2 (ENSSCAG00000000182) #26	TSPAN12 (ENSSCAG00000000213) #27	ING3 (ENSSCAG00000000233) #28	CPED1 (ENSSCAG00000000269) #29	WNT16 (ENSSCAG00000000288) #30	FAM3C (ENSSCAG00000000301) #31	PTPRZ1 (ENSSCAG00000000336) #32	AASS (ENSSCAG00000000401) #33	FEZF1 (ENSSCAG00000000429) #34	CADPS2 (ENSSCAG00000001348) #35	SLC13A1 (ENSSCAG00000003643)	ENSSCAG00000003656	IQUB (ENSSCAG00000003666)
African ostrich	MODERN SPECIES	222	ENSSCUG00000004383	MDFIC (ENSSCUG00000004382) #10	TFEC (ENSSCUG00000004379) #11	TES (ENSSCUG00000004376) #12	ENSSCUG00000004375	CAV2 (ENSSCUG00000004372) #13	CAV1 (ENSSCUG00000004371) #14	MET (ENSSCUG00000004369) #15	CAPZA2 (ENSSCUG00000004368) #16	ST7 (ENSSCUG00000004335) #17	WNT2 (ENSSCUG00000004314) #18	ASZ1 (ENSSCUG00000004312) #19	ENSSCUG00000004311	CFTR (ENSSCUG00000004308) #20	CTTNBP2 (ENSSCUG00000004304) #21	LSM8 (ENSSCUG00000004301) #22	ENSSCUG00000004296
Australian saltwater crocodile	MODERN SPECIES	49	FOXP2 (ENSCPRG00005010026) #9	MDFIC (ENSCPRG00005010050) #10	ENSCPRG00005010086	TFEC (ENSCPRG00005010099) #11	TES (ENSCPRG00005010118) #12	CAV2 (ENSCPRG00005010121) #13	CAV1 (ENSCPRG00005010126) #14	MET (ENSCPRG00005010146) #15	CAPZA2 (ENSCPRG00005010284) #16	ENSCPRG00005010321	ST7 (ENSCPRG00005010327) #17	WNT2 (ENSCPRG00005010348) #18	ASZ1 (ENSCPRG00005010351) #19	CFTR (ENSCPRG00005010391) #20	CTTNBP2 (ENSCPRG00005010434) #21	LSM8 (ENSCPRG00005010480) #22	ENSCPRG00005010484	ENSCPRG00005010524	ENSCPRG00005010585	KCND2 (ENSCPRG00005010626) #26	TSPAN12 (ENSCPRG00005010654) #27	ING3 (ENSCPRG00005010662) #28	CPED1 (ENSCPRG00005010685) #29	WNT16 (ENSCPRG00005010718) #30	FAM3C (ENSCPRG00005010721) #31	ENSCPRG00005010728	PTPRZ1 (ENSCPRG00005010748) #32	AASS (ENSCPRG00005010757) #33	FEZF1 (ENSCPRG00005010783) #34	CADPS2 (ENSCPRG00005010813) #35	ENSCPRG00005010829
Anura	ANCESTRAL SPECIES	24	ENSGT01040000241896	ENSGT00940000157682.B #8	ENSGT00940000155480 #9	ENSGT00940000158685 #10	ENSGT00940000159404 #11	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.b.a #14	ENSGT00940000158022 #15	ENSGT00950000183119.a.e.b #16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #26	ENSGT00510000047764 #27	ENSGT00940000156619 #28	ENSGT00390000015216 #29	ENSGT00940000157480 #30	ENSGT00950000183004.a.b.a.a #31	ENSGT00940000155529.C #32	ENSGT00390000013249 #33	ENSGT00940000159477 #34	ENSGT00590000083094.a.b #35	ENSGT01030000234550.a.a.d.a.a	ENSGT00940000158268.a	ENSGT00440000037417.A
Frog	MODERN SPECIES	3	mdfic (ENSXETG00000011565) #10	tfec (ENSXETG00000011566) #11	tes (ENSXETG00000011568) #12	ENSXETG00000042149	cav2 (ENSXETG00000040190) #13	cav1 (ENSXETG00000011572) #14	met (ENSXETG00000021752) #15	capza2 (ENSXETG00000021760) #16	ENSXETG00000045498	st7 (ENSXETG00000021764) #17	ENSXETG00000035452	wnt2 (ENSXETG00000031217) #18	asz1 (ENSXETG00000021791) #19	cftr (ENSXETG00000021796) #20	cttnbp2 (ENSXETG00000021813) #21	lsm8 (ENSXETG00000021829) #22	ENSXETG00000021831	ENSXETG00000045849	ENSXETG00000047565	kcnd2 (ENSXETG00000033363) #26	tspan12 (ENSXETG00000039927) #27	ing3 (ENSXETG00000022722) #28	germes (ENSXETG00000022726)	cped1 (ENSXETG00000033347) #29	wnt16 (ENSXETG00000022727) #30	fam3c (ENSXETG00000022730) #31	ENSXETG00000045889	ptprz1 (ENSXETG00000022735) #32	aass (ENSXETG00000022747) #33	fezf1 (ENSXETG00000022748) #34	cadps2 (ENSXETG00000022749) #35
Leishan spiny toad	MODERN SPECIES	6	TFEC (ENSLLEG00000006933) #11	ENSLLEG00000007017	TES (ENSLLEG00000007038) #12	ENSLLEG00000007175	ENSLLEG00000007200	ENSLLEG00000007214	CAV2 (ENSLLEG00000007273) #13	CAV1 (ENSLLEG00000007292) #14	ENSLLEG00000007314	MET (ENSLLEG00000007329) #15	CAPZA2 (ENSLLEG00000007430) #16	ST7 (ENSLLEG00000007521) #17	ASZ1 (ENSLLEG00000008226) #19	CFTR (ENSLLEG00000008811) #20	CTTNBP2 (ENSLLEG00000009120) #21	LSM8 (ENSLLEG00000009457) #22	ENSLLEG00000009520	ENSLLEG00000009794	KCND2 (ENSLLEG00000009861) #26	TSPAN12 (ENSLLEG00000009903) #27	ING3 (ENSLLEG00000010107) #28	CPED1 (ENSLLEG00000010420) #29	ENSLLEG00000010688	WNT16 (ENSLLEG00000010707) #30	FAM3C (ENSLLEG00000010809) #31	PTPRZ1 (ENSLLEG00000010960) #32	AASS (ENSLLEG00000011337) #33	ENSLLEG00000011449	FEZF1 (ENSLLEG00000011472) #34	ENSLLEG00000011550	CADPS2 (ENSLLEG00000011642) #35
Coelacanth	MODERN SPECIES	1307													CFTR (ENSLACG00000002983) #20	CTTNBP2 (ENSLACG00000006165) #21	ENSLACG00000022370	LSM8 (ENSLACG00000010231) #22	ENSLACG00000010389	ENSLACG00000011672	ENSLACG00000011742
Actinopterygii	ANCESTRAL SPECIES	1	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00390000002222	ENSGT00940000158082.b	ENSGT00940000158082.a.a	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.a ##14	ENSGT00940000158022 #15	ENSGT00950000183119.b ##16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000165748	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00390000000510	ENSGT00940000154156.d	ENSGT00910000146976	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000165441
Neopterygii	ANCESTRAL SPECIES	20	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00390000002222	ENSGT00940000158082.b	ENSGT00940000158082.a.a	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.a ##14	ENSGT00940000158022 #15	ENSGT00950000183119.b ##16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00940000160974.a	ENSGT00940000160243	ENSGT00940000165748	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT01010000222360.E.c	ENSGT00390000000510	ENSGT00940000154156.d	ENSGT00730000111591	ENSGT00530000064743
Osteoglossocephalai	ANCESTRAL SPECIES	55	ENSGT00940000158342.b	ENSGT00940000160413	ENSGT00390000002222	ENSGT00940000158082.b	ENSGT00940000158082.a.a	ENSGT00940000155993 #12	ENSGT00950000183006.A.b #13	ENSGT00950000183006.B.f.a ##14	ENSGT00940000158022 #15	ENSGT00950000183119.b ##16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00880000138051.a #19	ENSGT00940000158567 #20	ENSGT00940000158293 #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00940000160974.a	ENSGT00940000160243	ENSGT00940000165748	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00940000154156.d	ENSGT00730000111591	ENSGT00530000064743.a	ENSGT01010000222360.E.c	ENSGT00390000000510
Clupeocephala	ANCESTRAL SPECIES	640																ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b
Euteleosteomorpha	ANCESTRAL SPECIES	1																ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000156000	ENSGT00940000155083.b.a.b	ENSGT00940000155840.B	ENSGT00940000179100	ENSGT00390000007725.A.a	ENSGT00940000159226
Protacanthopterygii	ANCESTRAL SPECIES	96	ENSGT00900000143327	ENSGT00970000198416	ENSGT00530000063981.a.g	ENSGT00390000011648.a	ENSGT00390000007283.a	ENSGT00390000001969.b.f	ENSGT00940000164289.b.c.a	ENSGT00390000012875	ENSGT00940000157946.e	ENSGT00530000063534.a	ENSGT00940000165989	ENSGT00940000156400.a	ENSGT00940000156717.f	ENSGT00990000205092.c	ENSGT00390000017006	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000167105	ENSGT00940000164630	ENSGT01050000244882.b.d	ENSGT00390000003444	ENSGT00940000154738.a.r	ENSGT00940000155419.c.b	ENSGT00940000155915.b	ENSGT00950000183062.a.a.b.b.a	ENSGT00940000156242.c.b	ENSGT00390000013995.b.b.k.a.d	ENSGT00730000111061	ENSGT00390000016228.a.a	ENSGT00940000157529.i.b	ENSGT00530000063554.b
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	151	ENSGT00390000011648.a.n	ENSGT00390000007283.a.d	ENSGT00390000011648.a.m.a.a	ENSGT00390000007283.a.c	ENSGT00390000001969.b.f	ENSGT00940000164289.b.c.a	ENSGT00390000012875.f	ENSGT00530000063534.a	ENSGT00940000157946.e.e	ENSGT00940000156400.a	ENSGT00940000156717.f	ENSGT00990000205092.c.b	ENSGT00390000017006	ENSGT00730000111212.a.b #22	ENSGT00390000009250.f	ENSGT00730000111212.a.a #22	ENSGT00390000009250.e	ENSGT00940000167105	ENSGT00940000164630.e.b	ENSGT01050000244882.b.d	ENSGT00390000003444	ENSGT00940000154738.a.r.c.b	ENSGT00940000155419.c.b.d	ENSGT00940000155915.b.f.b.b	ENSGT00950000183062.a.a.b.b.a	ENSGT00940000156242.c.b	ENSGT00390000013995.b.b.k.a.d	ENSGT00730000111061	ENSGT00390000016228.a.a	ENSGT00940000157529.i.b	ENSGT00530000063554.b
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00730000111212.a.a #22
Oncorhynchus	ANCESTRAL SPECIES	378														ENSGT00990000205092.c.a.a.b	ENSGT00390000017006.j	ENSGT00730000111212.a.a #22
Oncorhynchus_a	ANCESTRAL SPECIES	197														ENSGT00990000205092.c.a.a.b	ENSGT00390000017006.j	ENSGT00730000111212.a.a #22	ENSGT00390000009250.e	ENSGT00940000167105	ENSGT00940000164630.e.b.a	ENSGT01050000244882.b.d	ENSGT00390000003444.e	ENSGT00940000154738.a.r.c.b	ENSGT00940000155419.c.b.d.a.a	ENSGT00940000155915.b.f.b.b	ENSGT00950000183062.a.a.b.b.a.h	ENSGT00390000013995.b.b.l
Coho salmon	MODERN SPECIES	712														ENSOKIG00005031162	RINT1 (ENSOKIG00005031260)	LSM8 (ENSOKIG00005031601) #22	TYMP (ENSOKIG00005031618)
Chinook salmon	MODERN SPECIES	107						wrap53 (ENSOTSG00005012487)	GIGYF1 (ENSOTSG00005012486)	pop7 (ENSOTSG00005012485)	epoa (ENSOTSG00005012484)	ENSOTSG00005012483	ENSOTSG00005012482	ENSOTSG00005012481	ENSOTSG00005012480	nlgn2a (ENSOTSG00005012479)	ENSOTSG00005012478	lsm8 (ENSOTSG00005012477) #22	TYMP (ENSOTSG00005012464)	ENSOTSG00005044187
Huchen	MODERN SPECIES	3697													ENSHHUG00000026787	ENSHHUG00000026750	rint1 (ENSHHUG00000026696)	lsm8 (ENSHHUG00000026657) #22	TYMP (ENSHHUG00000026644)	ENSHHUG00000026634	ENSHHUG00000026629	avpr2l (ENSHHUG00000026627)
Salmoninae	ANCESTRAL SPECIES	151	ENSGT00900000143327	ENSGT00530000063981.a.g.a	ENSGT00390000011648.a.n	ENSGT00390000007283.a.d	ENSGT00390000011648.a.m.a.a	ENSGT00390000007283.a.c	ENSGT00390000001969.b.f	ENSGT00940000164289.b.c.a	ENSGT00390000012875.f	ENSGT00530000063534.a	ENSGT00940000157946.e.e	ENSGT00940000156400.a	ENSGT00940000156717.f	ENSGT00990000205092.c.b	ENSGT00390000017006	ENSGT00730000111212.a.b #22	ENSGT00390000009250.f	ENSGT00730000111212.a.a #22	ENSGT00390000009250.e	ENSGT00940000167105	ENSGT00940000164630.e.b	ENSGT01050000244882.b.d	ENSGT00390000003444	ENSGT00940000154738.a.r.c.b	ENSGT00940000155419.c.b.d	ENSGT00940000155915.b.f.b.b	ENSGT00950000183062.a.a.b.b.a	ENSGT00940000156242.c.b	ENSGT00390000013995.b.b.k.a.d	ENSGT00730000111061	ENSGT00390000016228.a.a
Salmoninae_a	ANCESTRAL SPECIES	111	ENSGT00390000011648.a.n	ENSGT00390000007283.a.d	ENSGT00390000001969.b.f	ENSGT00940000164289.b.c.a	ENSGT00390000012875.f	ENSGT00530000063534.a	ENSGT00940000165989	ENSGT00940000164289.b.c.b	ENSGT00390000012875.e	ENSGT00940000157946.e.e	ENSGT00940000156400.a	ENSGT00940000156717.f	ENSGT00990000205092.c.a.a	ENSGT00990000205092.c.a.b	ENSGT00390000017006	ENSGT00730000111212.a.b #22	ENSGT00390000009250.e	ENSGT00940000167105	ENSGT00940000164630.e.b	ENSGT01050000244882.b.d	ENSGT00390000003444.e	ENSGT00940000154738.a.r.c.b	ENSGT00940000155419.c.b.d	ENSGT00940000155915.b.f.b.b	ENSGT00950000183062.a.a.b.b.a	ENSGT00940000156242.c.b	ENSGT00390000013995.b.b.k.a.d.a	ENSGT00730000111061	ENSGT00390000016228.a.a	ENSGT00940000157529.i.b	ENSGT00530000063554.b
Oncorhynchus	ANCESTRAL SPECIES	99	ENSGT00390000001969.b.f	ENSGT00940000164289.b.c.a	ENSGT00390000012875.f	ENSGT00530000063534.a.l	ENSGT00940000165989	ENSGT00940000164289.b.c.b	ENSGT00390000012875.e	ENSGT00530000063534.a.k	ENSGT00940000157946.e.e	ENSGT00940000156400.a	ENSGT00940000156717.f.c	ENSGT00990000205092.c.a.a.a	ENSGT00990000205092.c.a.b	ENSGT00990000205092.d	ENSGT00390000017006.i	ENSGT00730000111212.a.b #22	ENSGT00390000009250.e	ENSGT00940000167105	ENSGT00940000164630.e.b.a	ENSGT01050000244882.b.d	ENSGT00390000003444.e	ENSGT00940000154738.a.r.c.b	ENSGT00940000155419.c.b.d.a.a	ENSGT00940000155915.b.f.b.b	ENSGT00950000183062.a.a.b.b.a.h	ENSGT00390000013995.b.b.l
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000065105	PHTF2 (ENSOMYG00000011407)	ENSOMYG00000058083	TMEM60 (ENSOMYG00000011418)	RSBN1L (ENSOMYG00000059347)	ENSOMYG00000068223	GSAP (ENSOMYG00000057837)	ccdc146 (ENSOMYG00000062337)	fgl2a (ENSOMYG00000061888)	ENSOMYG00000011504	ENSOMYG00000068096	ENSOMYG00000076186	ENSOMYG00000022264	ENSOMYG00000022233	ENSOMYG00000022347	ENSOMYG00000022471 #22	ENSOMYG00000022502	ENSOMYG00000059259	ENSOMYG00000074966	ENSOMYG00000022535	ENSOMYG00000022565	ENSOMYG00000022550	nrcama (ENSOMYG00000022650)	cntn1b (ENSOMYG00000051012)	pdzrn4 (ENSOMYG00000059487)	gxylt1b (ENSOMYG00000009978)	ENSOMYG00000067071	yaf2 (ENSOMYG00000057383)	zcrb1 (ENSOMYG00000010102)	pphln1 (ENSOMYG00000010125)	prickle1b (ENSOMYG00000071948)
Rainbow trout	MODERN SPECIES	6	TMEM60 (ENSOMYG00000039644)	RSBN1L (ENSOMYG00000062111)	ENSOMYG00000056374	ENSOMYG00000071432	GSAP (ENSOMYG00000059859)	ENSOMYG00000071454	ENSOMYG00000072534	ENSOMYG00000056139	fgl2a (ENSOMYG00000056849)	ENSOMYG00000052861	ENSOMYG00000039214	ENSOMYG00000009466	ENSOMYG00000061778	ENSOMYG00000048164	ENSOMYG00000073181	ENSOMYG00000037434 #22	ENSOMYG00000075201	ENSOMYG00000064637	ENSOMYG00000022525	ENSOMYG00000009511	ENSOMYG00000009488	ENSOMYG00000057116	nrcama (ENSOMYG00000061390)	cntn1b (ENSOMYG00000049798)	ENSOMYG00000072561	pdzrn4 (ENSOMYG00000069353)	gxylt1b (ENSOMYG00000027204)	yaf2 (ENSOMYG00000076596)	zcrb1 (ENSOMYG00000027131)	PPHLN1 (ENSOMYG00000026959)	prickle1b (ENSOMYG00000056836)
Oncorhynchus_a	ANCESTRAL SPECIES	359												ENSGT00990000205092.c.a.a.a	ENSGT00990000205092.c.a.b	ENSGT00990000205092.d	ENSGT00390000017006.i	ENSGT00730000111212.a.b #22
Coho salmon	MODERN SPECIES	37	PRR5 (ENSOKIG00005049850)	PHTF2 (ENSOKIG00005049813)	TMEM60 (ENSOKIG00005049800)	ENSOKIG00005049799	RSBN1L (ENSOKIG00005049753)	GSAP (ENSOKIG00005049724)	FGL2 (ENSOKIG00005049719)	ccdc146 (ENSOKIG00005049716)	ENSOKIG00005049714	ENSOKIG00005049712	lrrc17 (ENSOKIG00005049706)	ENSOKIG00005049699	ENSOKIG00005049694	ENSOKIG00005049666	rint1 (ENSOKIG00005049590)	lsm8 (ENSOKIG00005049568) #22	TYMP (ENSOKIG00005049540)	ENSOKIG00005049526	TYMP (ENSOKIG00005049519)	ENSOKIG00005049493	ENSOKIG00005049475	avpr2l (ENSOKIG00005049466)	ENSOKIG00005049462	ENSOKIG00005049431	nrcama (ENSOKIG00005038879)	cntn1b (ENSOKIG00005036971)	pdzrn4 (ENSOKIG00005036829)	YAF2 (ENSOKIG00005036795)	zcrb1 (ENSOKIG00005036759)	ENSOKIG00005036607	prickle1b (ENSOKIG00005036564)
Huchen	MODERN SPECIES	2198								fgl2a (ENSHHUG00000026962)	lrrc17 (ENSHHUG00000026959)	ENSHHUG00000026933	ENSHHUG00000026927	ENSHHUG00000026913	ENSHHUG00000026881	ENSHHUG00000026861	ENSHHUG00000026859	lsm8 (ENSHHUG00000026837) #22	ENSHHUG00000026833	ENSHHUG00000026826	ENSHHUG00000026822	avpr2l (ENSHHUG00000026815)	ENSHHUG00000026810	ENSHHUG00000026808
Salmoninae	ANCESTRAL SPECIES																	ENSGT00730000111212.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00730000111212.b #22
Salmo	ANCESTRAL SPECIES	123	ENSGT00940000155474.p.b.n	ENSGT00530000063981.a.g.a.a	ENSGT00390000011648.a.n	ENSGT00390000007283.a.d	ENSGT00390000001969.b.f	ENSGT00940000164289.b.c.a	ENSGT00390000012875.f	ENSGT00530000063534.a	ENSGT00940000157946.e.e	ENSGT00940000156400.a	ENSGT00940000156717.f	ENSGT00990000205092.c.a.a.d	ENSGT00990000205092.c.a.b	ENSGT00990000205092.c.a.a.c	ENSGT00390000017006	ENSGT00730000111212.b #22	ENSGT00390000009250.e	ENSGT00940000167105	ENSGT00940000154738.a.r.c.a	ENSGT00940000155419.c.b.c.a.a	ENSGT00940000155915.b.e	ENSGT00950000183062.a.a.b.b.a	ENSGT00940000156242.c.b.g.b	ENSGT00390000013995.b.b.k.a.d.a	ENSGT00730000111061	ENSGT00390000016228.a.a	ENSGT00940000157529.i.b	ENSGT00530000063554.b	ENSGT00530000063868.b.j.b.b.a
River trout	DUPLICATION
River trout	MODERN SPECIES	466	ENSSTUG00000033906	rint1 (ENSSTUG00000033923)	lsm8 (ENSSTUG00000034031) #22	TYMP (ENSSTUG00000034045)	ENSSTUG00000034105	ENSSTUG00000034110	avpr2l (ENSSTUG00000034114)	ENSSTUG00000034119	fgl2a (ENSSTUG00000042196)	lrrc17 (ENSSTUG00000042230)	ENSSTUG00000042244	ENSSTUG00000042255	ENSSTUG00000042258	ENSSTUG00000042272	rint1 (ENSSTUG00000042319)	lsm8 (ENSSTUG00000042679) #22	TYMP (ENSSTUG00000042713)	ENSSTUG00000042839	ENSSTUG00000042858	avpr2l (ENSSTUG00000042874)	ENSSTUG00000042890	ENSSTUG00000042910	cntn1b (ENSSTUG00000043109)	nrcama (ENSSTUG00000045332)	nrcama (ENSSTUG00000050615)	cntn1b (ENSSTUG00000051167)	ENSSTUG00000051168	pdzrn4 (ENSSTUG00000051169)	gxylt1b (ENSSTUG00000051170)	yaf2 (ENSSTUG00000051171)	zcrb1 (ENSSTUG00000051172)
River trout	MODERN SPECIES	466	fgl2a (ENSSTUG00000033569)	ENSSTUG00000033580	ENSSTUG00000033644	GSAP (ENSSTUG00000033664)	TMEM60 (ENSSTUG00000033693)	RSBN1L (ENSSTUG00000033698)	ptpn12 (ENSSTUG00000033715)	ENSSTUG00000033749	ccdc146 (ENSSTUG00000033760)	fgl2a (ENSSTUG00000033814)	lrrc17 (ENSSTUG00000033826)	ENSSTUG00000033834	ENSSTUG00000033857	ENSSTUG00000033906	rint1 (ENSSTUG00000033923)	lsm8 (ENSSTUG00000034031) #22	TYMP (ENSSTUG00000034045)	ENSSTUG00000034105	ENSSTUG00000034110	avpr2l (ENSSTUG00000034114)	ENSSTUG00000034119	fgl2a (ENSSTUG00000042196)	lrrc17 (ENSSTUG00000042230)	ENSSTUG00000042244	ENSSTUG00000042255	ENSSTUG00000042258	ENSSTUG00000042272	rint1 (ENSSTUG00000042319)	lsm8 (ENSSTUG00000042679) #22	TYMP (ENSSTUG00000042713)	ENSSTUG00000042839
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000107747	ENSSSAG00000005250	ENSSSAG00000099470	RSBN1L (ENSSSAG00000108353)	ENSSSAG00000073551	ENSSSAG00000109356	ccdc146 (ENSSSAG00000121646)	FGL2 (ENSSSAG00000103928)	ENSSSAG00000091175	ENSSSAG00000040705	ENSSSAG00000119998	ENSSSAG00000009300	ENSSSAG00000098979	ENSSSAG00000086256	ENSSSAG00000109224	lsm8 (ENSSSAG00000060227) #22	ENSSSAG00000052880	ENSSSAG00000010186	ENSSSAG00000094513	ENSSSAG00000084829	ENSSSAG00000107382	nrcama (ENSSSAG00000113075)	cntn1b (ENSSSAG00000106879)	pdzrn4 (ENSSSAG00000006560)	ENSSSAG00000101593	ENSSSAG00000059312	ENSSSAG00000092373	ENSSSAG00000096395	ENSSSAG00000109211	ENSSSAG00000098344	ENSSSAG00000105743
Northern pike	MODERN SPECIES	17	ninj2 (ENSELUG00000010860)	ENSELUG00000010819	PRR5 (ENSELUG00000010777)	PHTF2 (ENSELUG00000010728)	tmem60 (ENSELUG00000010628)	RSBN1L (ENSELUG00000010658)	ENSELUG00000010592	GSAP (ENSELUG00000010484)	fgl2a (ENSELUG00000010300)	ccdc146 (ENSELUG00000010393)	lrrc17 (ENSELUG00000010262)	RAB19 (ENSELUG00000000369)	ENSELUG00000032955	ENSELUG00000010209	rint1 (ENSELUG00000010157)	lsm8 (ENSELUG00000010138) #22	TYMP (ENSELUG00000010096)	ENSELUG00000010056	ENSELUG00000009954	avpr2l (ENSELUG00000009942)	ENSELUG00000009924	PNPLA8 (ENSELUG00000009898)	nrcama (ENSELUG00000009785)	cntn1b (ENSELUG00000009490)	pdzrn4 (ENSELUG00000009410)	gxylt1b (ENSELUG00000009378)	rhag (ENSELUG00000009333)	rd3 (ENSELUG00000009302)	ENSELUG00000009282	ENSELUG00000009229	vrtn (ENSELUG00000009185)
Acanthomorphata	ANCESTRAL SPECIES	204	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000155878	ENSGT00940000158580	ENSGT00530000063539.b	ENSGT00730000111164	ENSGT00390000012080	ENSGT00390000007831	ENSGT00940000158113	ENSGT00390000004106	ENSGT00390000017740.a.a	ENSGT00940000158692	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014
Cod	MODERN SPECIES	17	ENSGMOG00000007933	si:ch211-214j24.10 (ENSGMOG00000032825)	ENSGMOG00000002402	ENSGMOG00000010129	ENSGMOG00000030510	ENSGMOG00000036659	CPM (ENSGMOG00000023009)	ENSGMOG00000017167	SLC35E3 (ENSGMOG00000017149)	NUP107 (ENSGMOG00000017037)	ENSGMOG00000017128	ENSGMOG00000028036	ENSGMOG00000026577	CAND1 (ENSGMOG00000000250)	ENSGMOG00000005276	lsm8 (ENSGMOG00000034521) #22	ENSGMOG00000014645	ENSGMOG00000025782	ENSGMOG00000019887	ENSGMOG00000030396	ENSGMOG00000025404	ENSGMOG00000034473	ENSGMOG00000030522	ENSGMOG00000009458	ENSGMOG00000009446	ENSGMOG00000000720	ENSGMOG00000024632	ENSGMOG00000024848	ENSGMOG00000001365	ENSGMOG00000029457	ENSGMOG00000022967
Euacanthomorphacea	ANCESTRAL SPECIES	139									ENSGT00940000175319	ENSGT00940000164058.j	ENSGT00390000007831	ENSGT00940000158113	ENSGT00390000004106	ENSGT00390000017740.a.a	ENSGT00940000158692	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014
Pinecone sodierfish	MODERN SPECIES	15												MYRFL (ENSMMDG00005006134)	cct2 (ENSMMDG00005004890)	nots (ENSMMDG00005002978)	ENSMMDG00005002919	lsm8 (ENSMMDG00005002913) #22	TYMP (ENSMMDG00005002741)	ENSMMDG00005002723	ENSMMDG00005002707	ENSMMDG00005002693	ENSMMDG00005002577	ENSMMDG00005002562	ENSMMDG00005007926	ENSMMDG00005007922	cand1 (ENSMMDG00005007806)	grip1 (ENSMMDG00005007785)	nup107 (ENSMMDG00005007611)	slc35e3 (ENSMMDG00005007599)	MDM2 (ENSMMDG00005007595)	cpm (ENSMMDG00005007590)	ENSMMDG00005007584
Percomorphaceae	ANCESTRAL SPECIES	35	ENSGT00940000156000	ENSGT00940000156016	ENSGT00390000010221	ENSGT00390000013550	ENSGT00940000157779	ENSGT00940000158580	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00390000007831	ENSGT00940000158113	ENSGT00940000174747	ENSGT00940000176985	ENSGT00940000158692.e.b	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT01030000236451	ENSGT00440000035348
Tiger tail seahorse	MODERN SPECIES	472	usp6nl (ENSHCOG00000005967)	celf2 (ENSHCOG00000005953)	srgap1b (ENSHCOG00000000820)	kics2 (ENSHCOG00000005311)	TMEM19 (ENSHCOG00000000147)	TBC1D30 (ENSHCOG00000005272)	prkcq (ENSHCOG00000005242)	SFMBT2 (ENSHCOG00000005203)	tmem110l (ENSHCOG00000005181)	ENSHCOG00000000138	ITIH5 (ENSHCOG00000005148)	itih2 (ENSHCOG00000005087)	kin (ENSHCOG00000005077)	ENSHCOG00000005052	grip1 (ENSHCOG00000005043)	lsm8 (ENSHCOG00000005037) #22	TYMP (ENSHCOG00000005025)	ENSHCOG00000005005	ENSHCOG00000004983	nots (ENSHCOG00000004940)	cct2 (ENSHCOG00000004567)	tspan12 (ENSHCOG00000004531) #27	kcnd2 (ENSHCOG00000004507) ##26	ENSHCOG00000004454	ENSHCOG00000004431	ENSHCOG00000004420	ENSHCOG00000004416	tmem243b (ENSHCOG00000004408)	dmtf1 (ENSHCOG00000004386)	cwf19l1 (ENSHCOG00000004362)	CD9 (ENSHCOG00000004354)
Percomorphaceae_B	ANCESTRAL SPECIES	27	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT01020000230360.c.b.a.a.a.a.b.b
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000166983.d	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT01090000260851	ENSGT00940000166983.c.b	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A
Ovalentaria_B	ANCESTRAL SPECIES	50			ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT01090000260851	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Pomacentridae	ANCESTRAL SPECIES	75		ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00940000166983.d	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983.c.b	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT01100000263504.a.b.b.b.b.y
Bicolor damselfish	MODERN SPECIES	1357											ENSSPAG00000021561	ENSSPAG00000021551	ENSSPAG00000021533	cand1 (ENSSPAG00000021475)	grip1 (ENSSPAG00000021433)	lsm8 (ENSSPAG00000021422) #22	TYMP (ENSSPAG00000021385)	ENSSPAG00000021371
Pomacentridae_A	ANCESTRAL SPECIES	116	ENSGT00530000063626.b	ENSGT00550000074930	ENSGT00940000164590	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00530000063626.b	ENSGT00550000074930	ENSGT00940000164590	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.n	ENSGT00940000157502	ENSGT00940000158094	ENSGT01090000260132.b.b.a.a.a	ENSGT00940000157659	ENSGT00390000002796	ENSGT00940000156003.l.b	ENSGT00530000063205.B	ENSGT00940000157275.a	ENSGT00390000005848	ENSGT00940000156334.a.b
Orange clownfish	MODERN SPECIES	13	LGR5 (ENSAPEG00000023978)	ENSAPEG00000023962	cct2 (ENSAPEG00000023941)	nots (ENSAPEG00000023856)	ENSAPEG00000023821	ENSAPEG00000023805	ENSAPEG00000023761	dyrk2 (ENSAPEG00000023744)	ENSAPEG00000023701	ENSAPEG00000023678	ENSAPEG00000023655	ENSAPEG00000023635	ENSAPEG00000023625	cand1 (ENSAPEG00000023575)	grip1 (ENSAPEG00000023516)	lsm8 (ENSAPEG00000023502) #22	TYMP (ENSAPEG00000023485)	SHANK3 (ENSAPEG00000023070)	ENSAPEG00000022993	ENSAPEG00000022968	ENSAPEG00000022960	ENSAPEG00000022939	ENSAPEG00000022900	ENSAPEG00000022884	ENSAPEG00000022476	creb3l2 (ENSAPEG00000022393)	ssbp1 (ENSAPEG00000022376)	ENSAPEG00000022315	eri1 (ENSAPEG00000022307)	TMCC3 (ENSAPEG00000022273)	ndufa12 (ENSAPEG00000022253)
Clown anemonefish	MODERN SPECIES	1065	kat7b (ENSAOCG00000014886)	ptges3l (ENSAOCG00000014828)	aarsd1 (ENSAOCG00000014735)	myof (ENSAOCG00000014674)	ENSAOCG00000014327	ash1l (ENSAOCG00000014299)	ENSAOCG00000014280	scamp3 (ENSAOCG00000014254)	crabp2b (ENSAOCG00000014237)	mrps21 (ENSAOCG00000014214)	ciarta (ENSAOCG00000014201)	ENSAOCG00000014188	cand1 (ENSAOCG00000000921)	ENSAOCG00000000892	grip1 (ENSAOCG00000014019)	lsm8 (ENSAOCG00000013926) #22	TYMP (ENSAOCG00000013905)
Spiny chromis	MODERN SPECIES	426	cct2 (ENSAPOG00000007872)	nots (ENSAPOG00000007905)	ENSAPOG00000000919	ENSAPOG00000007946	ENSAPOG00000007958	ENSAPOG00000008008	dyrk2 (ENSAPOG00000008047)	ENSAPOG00000008177	ENSAPOG00000008204	ENSAPOG00000008238	ENSAPOG00000008256	mdm1 (ENSAPOG00000008272)	ENSAPOG00000008316	cand1 (ENSAPOG00000008423)	grip1 (ENSAPOG00000008614)	lsm8 (ENSAPOG00000008649) #22	TYMP (ENSAPOG00000008710)	ENSAPOG00000008730	ENSAPOG00000008766
Cichlidae	ANCESTRAL SPECIES	54	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b.ec	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000155878	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000158580	ENSGT00940000157779	ENSGT00390000010221	ENSGT00940000156016
Midas cichlid	MODERN SPECIES	739			ENSACIG00000014457	ENSACIG00000014466	ENSACIG00000014475	ENSACIG00000014485	ENSACIG00000014494	dyrk2 (ENSACIG00000014506)	ENSACIG00000014517	ENSACIG00000014523	ENSACIG00000014535	ENSACIG00000014560	cand1 (ENSACIG00000014583)	ENSACIG00000014633	grip1 (ENSACIG00000014642)	lsm8 (ENSACIG00000014694) #22	TYMP (ENSACIG00000014709)	SHANK3 (ENSACIG00000014785)	ENSACIG00000014894
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b.dc.b	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.b.a.a.b.b	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000163472.e.b.e.b	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000155878	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000158580	ENSGT00940000157779	ENSGT00390000010221
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b.ec	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.b.a.a.b.b	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000163472.e.b.e.b	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000155878	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000158580	ENSGT00940000157779	ENSGT00390000010221
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00530000063539.b.ec	ENSGT00940000166983.c.b	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.b.a.a.b.b	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250.m.a	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000163472.e.b.e.b	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000155878	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000158580	ENSGT00940000157779	ENSGT00390000010221
Burton s mouthbrooder	MODERN SPECIES	309	ENSHBUG00000004014	ENSHBUG00000004003	ENSHBUG00000003994	ENSHBUG00000003965	ENSHBUG00000003925	ENSHBUG00000003895	ENSHBUG00000003887	dyrk2 (ENSHBUG00000003872)	ENSHBUG00000003850	ENSHBUG00000003794	ENSHBUG00000003779	ENSHBUG00000003765	cand1 (ENSHBUG00000003749)	ENSHBUG00000003706	grip1 (ENSHBUG00000003691)	lsm8 (ENSHBUG00000003646) #22	TYMP (ENSHBUG00000003624)	ENSHBUG00000000081	ENSHBUG00000003558	ENSHBUG00000003541	nots (ENSHBUG00000003512)	cct2 (ENSHBUG00000003373)	MYRFL (ENSHBUG00000003328)	ENSHBUG00000003269	rab21 (ENSHBUG00000003218)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00530000063539.b.ec	ENSGT00940000166983.c.b	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.b.a.a.b.b	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250.m.a	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000163472.e.b.e.b	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000155878	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000158580	ENSGT00940000157779	ENSGT00390000010221
P. nyererei	MODERN SPECIES	414				ENSPNYG00000011881	ENSPNYG00000011842	ENSPNYG00000011821	ENSPNYG00000011784	dyrk2 (ENSPNYG00000011760)	ifng1 (ENSPNYG00000011700)	ENSPNYG00000011690	ENSPNYG00000011600	ENSPNYG00000011572	cand1 (ENSPNYG00000011528)	ENSPNYG00000011508	grip1 (ENSPNYG00000011461)	lsm8 (ENSPNYG00000011448) #22	TYMP (ENSPNYG00000011334)	SHANK3 (ENSPNYG00000011145)	ENSPNYG00000011117	ENSPNYG00000011108	BEST3 (ENSPNYG00000011078)	nots (ENSPNYG00000010933)	cct2 (ENSPNYG00000010867)	ENSPNYG00000010821	ENSPNYG00000010745	rab21 (ENSPNYG00000010711)	ENSPNYG00000010693	ENSPNYG00000010685	TRHDE (ENSPNYG00000010645)	ENSPNYG00000010619	cpm (ENSPNYG00000010609)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT01060000248528.b.we.b	ENSGT00940000166983.c.b	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.b.a.a.b.b	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250.m.a	ENSGT00390000009250.n	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000163472.e.b.e.b	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983.d	ENSGT00940000168658	ENSGT01040000240400.c.a.b.a.a.d.a.b.b.f	ENSGT00940000158580
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005021009	ENSMZEG00005019459	ENSMZEG00005019432	ENSMZEG00005019423	ENSMZEG00005019416	ENSMZEG00005019407	dyrk2 (ENSMZEG00005019398)	ENSMZEG00005019393	ENSMZEG00005019390	ENSMZEG00005019389	ENSMZEG00005019375	mdm1 (ENSMZEG00005019347)	ENSMZEG00005019341	cand1 (ENSMZEG00005019330)	grip1 (ENSMZEG00005019153)	lsm8 (ENSMZEG00005019138) #22	TYMP (ENSMZEG00005019135)	ENSMZEG00005019110	ENSMZEG00005019099	ENSMZEG00005019094	BEST3 (ENSMZEG00005019085)	nots (ENSMZEG00005019055)	cct2 (ENSMZEG00005019036)	pthlha (ENSMZEG00005019020)	ENSMZEG00005019018	ENSMZEG00005019017	C11orf98 (ENSMZEG00005019012)	ENSMZEG00005019009	lrp6 (ENSMZEG00005018989)	ENSMZEG00005018980	cbln10 (ENSMZEG00005018976)
Eastern happy	MODERN SPECIES	8	ENSACLG00000012080	ENSACLG00000012049	ENSACLG00000011979	ENSACLG00000011959	ENSACLG00000011935	dyrk2 (ENSACLG00000011888)	ENSACLG00000011864	ENSACLG00000011843	ENSACLG00000011467	ENSACLG00000011460	ENSACLG00000011457	mdm1 (ENSACLG00000011449)	ENSACLG00000011443	cand1 (ENSACLG00000011413)	grip1 (ENSACLG00000011264)	lsm8 (ENSACLG00000011253) #22	ENSACLG00000011251	ENSACLG00000011250	ENSACLG00000011100	ENSACLG00000011089	ENSACLG00000011078	BEST3 (ENSACLG00000011062)	nots (ENSACLG00000011045)	cct2 (ENSACLG00000010947)	ENSACLG00000010914	ENSACLG00000010907	ENSACLG00000010889	ENSACLG00000010844	rab21 (ENSACLG00000010830)	ENSACLG00000010796	ENSACLG00000010784
Lyretail cichlid	MODERN SPECIES	291	ENSNBRG00000014005	ENSNBRG00000014015	ENSNBRG00000014026	ENSNBRG00000014094	ENSNBRG00000014112	ENSNBRG00000014139	ENSNBRG00000014162	ENSNBRG00000014171	dyrk2 (ENSNBRG00000014202)	ifng1 (ENSNBRG00000014224)	ENSNBRG00000014233	ENSNBRG00000014247	ENSNBRG00000014261	cand1 (ENSNBRG00000014291)	grip1 (ENSNBRG00000014378)	lsm8 (ENSNBRG00000014441) #22	TYMP (ENSNBRG00000014459)	SHANK3 (ENSNBRG00000014507)	ENSNBRG00000014581	BEST3 (ENSNBRG00000014595)	nots (ENSNBRG00000014616)	cct2 (ENSNBRG00000014641)	MYRFL (ENSNBRG00000014681)	ENSNBRG00000014734	ENSNBRG00000014755	rab21 (ENSNBRG00000014763)	ENSNBRG00000014783	TRHDE (ENSNBRG00000014800)	ENSNBRG00000014839	cpm (ENSNBRG00000014859)	dclre1c (ENSNBRG00000014886)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000029533	ENSONIG00000018013	ENSONIG00000041164	ENSONIG00000033166	ENSONIG00000018019	ENSONIG00000018020	dyrk2 (ENSONIG00000039108)	ENSONIG00000031093	ENSONIG00000026380	ENSONIG00000018024	mdm1 (ENSONIG00000018026)	ENSONIG00000018029	cand1 (ENSONIG00000018030)	grip1 (ENSONIG00000018035)	ENSONIG00000031571	lsm8 (ENSONIG00000039902) #22	TYMP (ENSONIG00000018041)	SHANK3 (ENSONIG00000018042)	ENSONIG00000033304	ENSONIG00000043113	BEST3 (ENSONIG00000018049)	nots (ENSONIG00000042629)	cct2 (ENSONIG00000018052)	MYRFL (ENSONIG00000018055)	LGR5 (ENSONIG00000018057)	ENSONIG00000039109	rab21 (ENSONIG00000018075)	ENSONIG00000034476	ENSONIG00000032273	ENSONIG00000032896	ENSONIG00000034133
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Oryzias	ANCESTRAL SPECIES	20	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00940000174747	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00940000158113	ENSGT00390000017498.f
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00940000175319	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00940000158113	ENSGT00390000017498.f
Indian medaka	MODERN SPECIES	2	crebl2 (ENSOMEG00000021499)	dusp16 (ENSOMEG00000021520)	eps8a (ENSOMEG00000021670)	PTPRO (ENSOMEG00000021976)	KCNA1 (ENSOMEG00000000864)	ENSOMEG00000022032	ENSOMEG00000022061	ENSOMEG00000022123	ENSOMEG00000022149	ENSOMEG00000022176	ENSOMEG00000000581	ENSOMEG00000022211	ENSOMEG00000022280	cand1 (ENSOMEG00000022335)	grip1 (ENSOMEG00000022476)	lsm8 (ENSOMEG00000022509) #22	ENSOMEG00000022526	ENSOMEG00000022569	ENSOMEG00000022595	BEST3 (ENSOMEG00000022623)	nots (ENSOMEG00000022636)	cct2 (ENSOMEG00000022656)	ENSOMEG00000022713	LGR5 (ENSOMEG00000022743)	rab21 (ENSOMEG00000022757)	PTPRR (ENSOMEG00000022772)	PTPRB (ENSOMEG00000022849)	KCNMB4 (ENSOMEG00000022874)	CNOT2 (ENSOMEG00000022902)	ENSOMEG00000022940	ENSOMEG00000022946
Javanese ricefish	MODERN SPECIES	15	ENSOJAG00000020690	pthlha (ENSOJAG00000020673)	ENSOJAG00000020660	C11orf98 (ENSOJAG00000020646)	ENSOJAG00000020639	gpr19 (ENSOJAG00000018565)	crebl2 (ENSOJAG00000018552)	eps8a (ENSOJAG00000017699)	KCNA1 (ENSOJAG00000017167)	ENSOJAG00000017148	ENSOJAG00000017131	ENSOJAG00000017114	ENSOJAG00000017098	ENSOJAG00000017083	grip1 (ENSOJAG00000016366)	LSM8 (ENSOJAG00000016320) #22	TYMP (ENSOJAG00000016292)	ENSOJAG00000015787	ENSOJAG00000015739	BEST3 (ENSOJAG00000015667)	nots (ENSOJAG00000015633)	cct2 (ENSOJAG00000015183)	ENSOJAG00000015105	ENSOJAG00000015051	xpot (ENSOJAG00000014927)	rtcb (ENSOJAG00000014903)	fbxo7 (ENSOJAG00000014895)	kiaa0930 (ENSOJAG00000014799)	nup50 (ENSOJAG00000014777)	ENSOJAG00000014770	ENSOJAG00000023825
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.o.b	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00940000158113	ENSGT00390000017498.f
Japanese Medaka HdrR	MODERN SPECIES	15	crebl2 (ENSORLG00000020771)	dusp16 (ENSORLG00000024382)	eps8a (ENSORLG00000029932)	PTPRO (ENSORLG00000023226)	KCNA5 (ENSORLG00000026805)	KCNA1 (ENSORLG00000020772)	ENSORLG00000023398	ENSORLG00000020773	ENSORLG00000027228	ENSORLG00000020776	ENSORLG00000026810	ENSORLG00000028525	ENSORLG00000017481	cand1 (ENSORLG00000017477)	grip1 (ENSORLG00000017453)	LSM8 (ENSORLG00000017432) #22	TYMP (ENSORLG00000017428)	ENSORLG00000024534	ENSORLG00000024499	BEST3 (ENSORLG00000017413)	nots (ENSORLG00000017411)	cct2 (ENSORLG00000017401)	ENSORLG00000021876	ENSORLG00000023868	ENSORLG00000021900	rab21 (ENSORLG00000022631)	PTPRR (ENSORLG00000017389)	PTPRB (ENSORLG00000017385)	KCNMB4 (ENSORLG00000017367)	CNOT2 (ENSORLG00000017361)	ENSORLG00000027073
Chinese medaka	MODERN SPECIES	4789																lsm8 (ENSOSIG00000011840) #22	ENSOSIG00000011842
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983.c.b	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00390000006670
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000174747	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00390000006670
NAME_4	ANCESTRAL SPECIES	119	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000166983.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000174747	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Sheepshead minnow	MODERN SPECIES	349									ENSCVAG00000020903	dyrk2 (ENSCVAG00000020867)	ENSCVAG00000020841	ENSCVAG00000020666	ENSCVAG00000020660	cand1 (ENSCVAG00000020638)	grip1 (ENSCVAG00000020571)	lsm8 (ENSCVAG00000020547) #22	TYMP (ENSCVAG00000020536)	SHANK3 (ENSCVAG00000020512)	ENSCVAG00000020367	ENSCVAG00000020340	nots (ENSCVAG00000020301)	cct2 (ENSCVAG00000020271)	ENSCVAG00000020194	LGR5 (ENSCVAG00000020174)	rab21 (ENSCVAG00000020034)	ENSCVAG00000020012	ENSCVAG00000020007	ENSCVAG00000019996	ENSCVAG00000019978	ENSCVAG00000019922	KCNMB4 (ENSCVAG00000019896)
Mummichog	MODERN SPECIES	294														ENSFHEG00000013777	grip1 (ENSFHEG00000013766)	lsm8 (ENSFHEG00000013729) #22	TYMP (ENSFHEG00000000680)	ENSFHEG00000000326	ENSFHEG00000013609	ENSFHEG00000013597	ENSFHEG00000000595	nots (ENSFHEG00000000317)	cct2 (ENSFHEG00000013453)	ENSFHEG00000013404	ENSFHEG00000013364	rab21 (ENSFHEG00000013351)	ENSFHEG00000013339	PTPRR (ENSFHEG00000013329)	ENSFHEG00000013313	KCNMB4 (ENSFHEG00000013012)	ENSFHEG00000012998
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00940000174747	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT00940000157212.B	ENSGT00940000156088.c.a.f	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.b.a.a.b
Platyfish	MODERN SPECIES	8	TRHDE (ENSXMAG00000006591)	ENSXMAG00000021243	ENSXMAG00000029485	ENSXMAG00000006565	ENSXMAG00000024337	ENSXMAG00000023120	ENSXMAG00000006556	dyrk2 (ENSXMAG00000006546)	ifng1 (ENSXMAG00000023329)	ENSXMAG00000026633	ENSXMAG00000006543	ENSXMAG00000006542	ENSXMAG00000006539	cand1 (ENSXMAG00000006499)	grip1 (ENSXMAG00000006468)	lsm8 (ENSXMAG00000025919) #22	ENSXMAG00000006462	usp6nl (ENSXMAG00000017536)	ECHDC3 (ENSXMAG00000017527)	kcnj8 (ENSXMAG00000017494)	abcc9 (ENSXMAG00000017404)	ENSXMAG00000023094	ENSXMAG00000010363	ENSXMAG00000021409	ENSXMAG00000026562	ENSXMAG00000029272	ENSXMAG00000027977	ENSXMAG00000028843	ENSXMAG00000022479	ENSXMAG00000028754	ENSXMAG00000021142
Poecilia	ANCESTRAL SPECIES	29	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00940000174747	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT00940000157212.B	ENSGT00940000156088.c.a.f	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00950000183089.c.a.k.b.b.k.a.a.a.a.a.a
Guppy	MODERN SPECIES	454	cpm (ENSPREG00000005006)	ENSPREG00000005031	TRHDE (ENSPREG00000005050)	ENSPREG00000005145	ENSPREG00000005168	ENSPREG00000005193	ENSPREG00000005208	dyrk2 (ENSPREG00000005231)	ENSPREG00000005260	ENSPREG00000005329	ENSPREG00000005339	ENSPREG00000005353	ENSPREG00000005363	cand1 (ENSPREG00000005384)	grip1 (ENSPREG00000005448)	lsm8 (ENSPREG00000005527) #22	ENSPREG00000005537	ENSPREG00000005549	ENSPREG00000005587	BEST3 (ENSPREG00000005607)	nots (ENSPREG00000005653)	cct2 (ENSPREG00000005706)	LGR5 (ENSPREG00000005750)	rab21 (ENSPREG00000005797)	ENSPREG00000005831	PTPRR (ENSPREG00000005843)	PTPRB (ENSPREG00000005900)	KCNMB4 (ENSPREG00000006017)	CNOT2 (ENSPREG00000006034)	ENSPREG00000006093	ENSPREG00000006097
NAME_6	ANCESTRAL SPECIES	289												ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000173612	ENSGT00940000157212.B	ENSGT00940000156088.c.a.f
Amazon molly	MODERN SPECIES	629													ENSPFOG00000012819	cand1 (ENSPFOG00000012760)	grip1 (ENSPFOG00000012379)	lsm8 (ENSPFOG00000012340) #22	TYMP (ENSPFOG00000012283)	ENSPFOG00000012008	ENSPFOG00000011981	BEST3 (ENSPFOG00000011977)	nots (ENSPFOG00000011897)	cct2 (ENSPFOG00000011762)	ENSPFOG00000011745	LGR5 (ENSPFOG00000011103)	rab21 (ENSPFOG00000011045)	ENSPFOG00000011039	PTPRR (ENSPFOG00000010904)	ENSPFOG00000010470
Sailfin molly	MODERN SPECIES	1307															grip1 (ENSPLAG00000012277)	lsm8 (ENSPLAG00000000516) #22	TYMP (ENSPLAG00000012313)	ENSPLAG00000012331	ENSPLAG00000012375	ENSPLAG00000012388	BEST3 (ENSPLAG00000012407)	nots (ENSPLAG00000012457)	cct2 (ENSPLAG00000012485)
Aplocheiloidei	ANCESTRAL SPECIES	130											ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a.p	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000166983.c.b	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00390000006670	ENSGT00390000004190
Turquoise killifish	MODERN SPECIES	1610	VETZ (ENSNFUG00015010194)	metap2b (ENSNFUG00015010243)	ENSNFUG00015010573	USP44 (ENSNFUG00015010576)	NTN4 (ENSNFUG00015010587)	snrpf (ENSNFUG00015010592)	amdhd1 (ENSNFUG00015010600)	tspan9b (ENSNFUG00015010611)	KLHL10 (ENSNFUG00015010625)	ENSNFUG00015010630	ENSNFUG00015010634	OLA.20330 (ENSNFUG00015010662)	ENSNFUG00015010703	CAND1 (ENSNFUG00015010729)	CABZ01052652.1 (ENSNFUG00015011425)	LSM8 (ENSNFUG00015011629) #22	TYMP (ENSNFUG00015011657)	BEST3 (ENSNFUG00015011708)	nots (ENSNFUG00015012215)	CABZ01073085.1 (ENSNFUG00015012230)	MYRFL (ENSNFUG00015012316)	ENSNFUG00015012331	ENSNFUG00015012337	RAB21 (ENSNFUG00015012349)	TRMT61B (ENSNFUG00015012363)	si:dkey-119f1.1 (ENSNFUG00015012370)	Nfu_g_1_011626 (ENSNFUG00015012378)	PTPRR (ENSNFUG00015012386)	PTPRB (ENSNFUG00015012458)	KCNMB4 (ENSNFUG00015012489)	CNOT2 (ENSNFUG00015012497)
Mangrove rivulus	MODERN SPECIES	1077																lsm8 (ENSKMAG00000018983) #22	TYMP (ENSKMAG00000019003)
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT01090000260851	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT01020000230360.c.b.a.a.a.a.b.b
Anabantaria	ANCESTRAL SPECIES	27	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00940000172122	ENSGT00940000161860
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000019256	ENSMAMG00000019248	ENSMAMG00000019200	ENSMAMG00000019168	ENSMAMG00000019152	ENSMAMG00000019107	ENSMAMG00000019121	dyrk2 (ENSMAMG00000019080)	ENSMAMG00000019069	ENSMAMG00000019062	ENSMAMG00000019057	mdm1 (ENSMAMG00000019046)	ENSMAMG00000025612	ENSMAMG00000018950	ENSMAMG00000018853	lsm8 (ENSMAMG00000018839) #22	ENSMAMG00000018767	ENSMAMG00000018740	ENSMAMG00000018721	ENSMAMG00000027111	ENSMAMG00000018549	ENSMAMG00000018515	ENSMAMG00000018490	ENSMAMG00000018441	ENSMAMG00000027641	ENSMAMG00000018406	ENSMAMG00000018384	ENSMAMG00000018367	ENSMAMG00000018350	ENSMAMG00000018276	ENSMAMG00000018226
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00940000172122	ENSGT00940000161860
Siamese fighting fish	MODERN SPECIES	20	cpm (ENSBSLG00000010758)	ENSBSLG00000010788	TRHDE (ENSBSLG00000010858)	ENSBSLG00000011190	ENSBSLG00000011210	ENSBSLG00000011225	ENSBSLG00000011241	dyrk2 (ENSBSLG00000011249)	ENSBSLG00000011257	ENSBSLG00000011261	ENSBSLG00000011268	mdm1 (ENSBSLG00000011273)	ENSBSLG00000011281	cand1 (ENSBSLG00000011326)	grip1 (ENSBSLG00000011491)	lsm8 (ENSBSLG00000012052) #22	TYMP (ENSBSLG00000012066)	SHANK3 (ENSBSLG00000012131)	ENSBSLG00000012530	BEST3 (ENSBSLG00000012556)	nots (ENSBSLG00000012614)	cct2 (ENSBSLG00000012631)	MYRFL (ENSBSLG00000012654)	LGR5 (ENSBSLG00000012672)	rab21 (ENSBSLG00000012693)	ENSBSLG00000012697	PTPRR (ENSBSLG00000012711)	PTPRB (ENSBSLG00000013010)	KCNMB4 (ENSBSLG00000013021)	CNOT2 (ENSBSLG00000001697)	ENSBSLG00000001709
Climbing perch	MODERN SPECIES	14	ENSATEG00000023329	ENSATEG00000023340	ENSATEG00000023343	ENSATEG00000029926	ENSATEG00000028577	ENSATEG00000023359	dyrk2 (ENSATEG00000023365)	ENSATEG00000023375	ENSATEG00000023378	ENSATEG00000023380	mdm1 (ENSATEG00000023386)	ENSATEG00000023396	ENSATEG00000023408	ENSATEG00000023427	ENSATEG00000029563	lsm8 (ENSATEG00000023432) #22	ENSATEG00000023439	ENSATEG00000023462	ENSATEG00000028537	ENSATEG00000029239	ENSATEG00000023497	ENSATEG00000023517	ENSATEG00000023525	ENSATEG00000028049	ENSATEG00000023544	ENSATEG00000023553	ENSATEG00000023571	PTPRR (ENSATEG00000023588)	ENSATEG00000023608	KCNMB4 (ENSATEG00000029116)	ENSATEG00000023619
Carangaria	ANCESTRAL SPECIES	22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Carangaria_A	ANCESTRAL SPECIES	85					ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Barramundi perch	MODERN SPECIES	202							ENSLCAG00010008192	dyrk2 (ENSLCAG00010008200)	ifng1 (ENSLCAG00010008215)	ENSLCAG00010008220	ENSLCAG00010008224	ENSLCAG00010008234	ENSLCAG00010008259	cand1 (ENSLCAG00010008359)	grip1 (ENSLCAG00010008531)	lsm8 (ENSLCAG00010008614) #22	TYMP (ENSLCAG00010008622)	SHANK3 (ENSLCAG00010008626)	ENSLCAG00010008629	ENSLCAG00010008632	ENSLCAG00010008639	ENSLCAG00010008644	ENSLCAG00010008647	nots (ENSLCAG00010008649)	cct2 (ENSLCAG00010008661)	MYRFL (ENSLCAG00010008693)	LGR5 (ENSLCAG00010008700)	rab21 (ENSLCAG00010008703)	ENSLCAG00010008705	PTPRR (ENSLCAG00010008715)	PTPRB (ENSLCAG00010008739)
Seriola	ANCESTRAL SPECIES	9	ENSGT00940000153920.a.a	ENSGT00940000158123	ENSGT00940000157638	ENSGT00940000159226	ENSGT01040000240400.c.a.b.a.b.a.b.n.a	ENSGT01040000240400.c.a.b.a.b.a.b.m	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250.q	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00970000193381.a.b.a.a.b.b.b
Greater amberjack	MODERN SPECIES	60	prkcq (ENSSDUG00000015222)	TBC1D30 (ENSSDUG00000015199)	ENSSDUG00000015190	ENSSDUG00000015184	ENSSDUG00000015160	ENSSDUG00000015146	ENSSDUG00000015130	dyrk2 (ENSSDUG00000015099)	ENSSDUG00000015082	ENSSDUG00000015073	ENSSDUG00000015056	mdm1 (ENSSDUG00000015032)	ENSSDUG00000015009	cand1 (ENSSDUG00000014913)	grip1 (ENSSDUG00000014739)	lsm8 (ENSSDUG00000014702) #22	TYMP (ENSSDUG00000014665)	ENSSDUG00000014637	ENSSDUG00000014629	ENSSDUG00000014619	ENSSDUG00000014612	nots (ENSSDUG00000014484)	cct2 (ENSSDUG00000014386)	ENSSDUG00000014348	ENSSDUG00000014319	rab21 (ENSSDUG00000014305)	ENSSDUG00000014287	ENSSDUG00000014277	ENSSDUG00000014263	ENSSDUG00000014249	ENSSDUG00000014242
Yellowtail amberjack	MODERN SPECIES	2935	prkcq (ENSSLDG00000017283)	TBC1D30 (ENSSLDG00000017239)	ENSSLDG00000017214	ENSSLDG00000017186	ENSSLDG00000017167	ENSSLDG00000017157	ENSSLDG00000017135	ENSSLDG00000017120	dyrk2 (ENSSLDG00000017091)	ENSSLDG00000017072	ENSSLDG00000017065	ENSSLDG00000017028	ENSSLDG00000017008	cand1 (ENSSLDG00000016941)	grip1 (ENSSLDG00000016889)	lsm8 (ENSSLDG00000016870) #22
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00940000157779	ENSGT00940000158580	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000166983	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Tongue sole	MODERN SPECIES	18	cpm (ENSCSEG00000004301)	ENSCSEG00000004298	TRHDE (ENSCSEG00000004276)	ENSCSEG00000004272	ENSCSEG00000004266	ENSCSEG00000004258	ENSCSEG00000004244	dyrk2 (ENSCSEG00000004237)	ENSCSEG00000004231	ENSCSEG00000004228	ENSCSEG00000004224	ENSCSEG00000004213	ENSCSEG00000004203	cand1 (ENSCSEG00000004187)	grip1 (ENSCSEG00000004167)	lsm8 (ENSCSEG00000004164) #22	TYMP (ENSCSEG00000004161)	SHANK3 (ENSCSEG00000004140)	ENSCSEG00000004132	ENSCSEG00000004121	ENSCSEG00000004115	BEST3 (ENSCSEG00000004088)	ENSCSEG00000004084	ENSCSEG00000004064	ENSCSEG00000004045	KCNA5 (ENSCSEG00000004042)	KCNA1 (ENSCSEG00000004039)	ENSCSEG00000004037	ARHGAP8 (ENSCSEG00000004032)	PHF21B (ENSCSEG00000004019)	nup50 (ENSCSEG00000004014)
Turbot	MODERN SPECIES	11	ENSSMAG00000009923	ENSSMAG00000009703	ENSSMAG00000009649	ENSSMAG00000009038	ENSSMAG00000030358	ENSSMAG00000032989	ENSSMAG00000009100	dyrk2 (ENSSMAG00000009112)	ENSSMAG00000009126	ENSSMAG00000009138	ENSSMAG00000009146	ENSSMAG00000009182	ENSSMAG00000026855	ENSSMAG00000009292	ENSSMAG00000009375	lsm8 (ENSSMAG00000009458) #22	ENSSMAG00000009427	ENSSMAG00000028975	ENSSMAG00000009477	ENSSMAG00000025941	ENSSMAG00000009525	ENSSMAG00000034467	ENSSMAG00000034984	ENSSMAG00000023797	ENSSMAG00000007480	ENSSMAG00000007407	ENSSMAG00000007369	ENSSMAG00000021518	ENSSMAG00000007268	PTPRR (ENSSMAG00000007255)	ENSSMAG00000033923
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT01090000260851	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00940000156016	ENSGT00940000158580	ENSGT00940000155878	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.e.a	ENSGT00730000111212 #22	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002843	vps45 (ENSTNIG00000002844)	eapp (ENSTNIG00000002845)	egln3 (ENSTNIG00000002846)	ENSTNIG00000002847	ENSTNIG00000002848	sgms2b (ENSTNIG00000002849)	SRPK3 (ENSTNIG00000002850)	PLXNB3 (ENSTNIG00000002851)	brinp2 (ENSTNIG00000002852)	ENSTNIG00000002857	slc35a2 (ENSTNIG00000002858)	otud5a (ENSTNIG00000002859)	ENSTNIG00000001123	ENSTNIG00000002863	lsm8 (ENSTNIG00000002864) #22	TYMP (ENSTNIG00000002865)	SHANK3 (ENSTNIG00000002866)	ENSTNIG00000002867	BEST3 (ENSTNIG00000002868)	nots (ENSTNIG00000002869)	cct2 (ENSTNIG00000002870)	MYRFL (ENSTNIG00000002871)	ADGRA3 (ENSTNIG00000002882)	ENSTNIG00000002883	med27 (ENSTNIG00000002884)	fnbp1a (ENSTNIG00000002885)	OLFM1 (ENSTNIG00000002886)	ENSTNIG00000002893	clic3 (ENSTNIG00000002894)	PNPLA7 (ENSTNIG00000002895)
Fugu	MODERN SPECIES	9	cwf19l1 (ENSTRUG00000005661)	dmtf1 (ENSTRUG00000005215)	cpm (ENSTRUG00000004809)	TRHDE (ENSTRUG00000003291)	ENSTRUG00000003029	ENSTRUG00000027428	ENSTRUG00000023557	dyrk2 (ENSTRUG00000032406)	ENSTRUG00000006741	ENSTRUG00000025030	ENSTRUG00000006725	mdm1 (ENSTRUG00000030571)	ENSTRUG00000021835	cand1 (ENSTRUG00000005935)	grip1 (ENSTRUG00000005225)	lsm8 (ENSTRUG00000030890) #22	SHANK3 (ENSTRUG00000004729)	ENSTRUG00000006978	ENSTRUG00000023034	NXPE3 (ENSTRUG00000004429)	ENSTRUG00000025991	ENSTRUG00000024768	apex1 (ENSTRUG00000004268)	osgep (ENSTRUG00000003877)	si:ch211-214j24.10 (ENSTRUG00000003852)	ENSTRUG00000027985	nav3 (ENSTRUG00000001974)	e2f7 (ENSTRUG00000001843)	csrp2 (ENSTRUG00000019675)	zdhhc17 (ENSTRUG00000001408)	ENSTRUG00000028097
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00990000204250	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT01090000260851	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00940000168658.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00990000204250.c.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT01090000260851	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Perciformes	ANCESTRAL SPECIES	18	ENSGT00940000166983	ENSGT00940000168658.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00990000204250.c.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i	ENSGT00990000203553.c.b.b
Perciformes_a	ANCESTRAL SPECIES	53	ENSGT00940000155878	ENSGT00940000168658.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00990000204250.c.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22
Pike perch	MODERN SPECIES	136	slc35e3 (ENSSLUG00000006031)	nup107 (ENSSLUG00000006156)	mdm2 (ENSSLUG00000008233)	plxnb2a.1 (ENSSLUG00000008338)	ENSSLUG00000009769	ENSSLUG00000009773	ENSSLUG00000009780	ENSSLUG00000009788	dyrk2 (ENSSLUG00000009798)	ENSSLUG00000009813	ENSSLUG00000009827	ENSSLUG00000009836	ENSSLUG00000009855	cand1 (ENSSLUG00000009901)	grip1 (ENSSLUG00000010086)	lsm8 (ENSSLUG00000010107) #22	TYMP (ENSSLUG00000010135)
Cottioidei	ANCESTRAL SPECIES	80	ENSGT00940000156000	ENSGT01050000244882.a.a.a.a.b	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00390000017998	ENSGT00990000204250.d	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b
Lumpfish	MODERN SPECIES	15	kics2 (ENSCLMG00005010708)	TMEM19 (ENSCLMG00005010706)	ENSCLMG00005010705	ENSCLMG00005019526	ENSCLMG00005019525	ENSCLMG00005019522	dyrk2 (ENSCLMG00005019521)	ENSCLMG00005019472	ENSCLMG00005019471	ENSCLMG00005019470	ENSCLMG00005019466	ENSCLMG00005019450	ENSCLMG00005019448	cand1 (ENSCLMG00005018971)	grip1 (ENSCLMG00005018952)	lsm8 (ENSCLMG00005018950) #22	TYMP (ENSCLMG00005018949)	ENSCLMG00005018947	ENSCLMG00005018946	ENSCLMG00005018902	eri1 (ENSCLMG00005018896)	TMCC3 (ENSCLMG00005018895)	ndufa12 (ENSCLMG00005018894)	fgd6 (ENSCLMG00005018893)	vezt (ENSCLMG00005018882)	metap2b (ENSCLMG00005018879)	usp44 (ENSCLMG00005018877)	ntn4 (ENSCLMG00005018876)	snrpf (ENSCLMG00005018875)	amdhd1 (ENSCLMG00005018874)	tspan9b (ENSCLMG00005018873)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000168658.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00990000204250.c.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214	ENSGT00940000156786	ENSGT00940000161376	ENSGT01090000260851	ENSGT00940000157212.B	ENSGT00940000156088.c.a	ENSGT00950000183039.A	ENSGT00390000001285.i
Gilthead seabream	MODERN SPECIES	5	dyrk2 (ENSSAUG00010024624)	ENSSAUG00010012411	ENSSAUG00010012413	ENSSAUG00010012416	ENSSAUG00010012425	ENSSAUG00010012444	ENSSAUG00010012450	ENSSAUG00010012459	ENSSAUG00010012465	ENSSAUG00010012468	ENSSAUG00010012470	cand1 (ENSSAUG00010012516)	ENSSAUG00010014659	ENSSAUG00010014678	ENSSAUG00010014683	lsm8 (ENSSAUG00010014686) #22	TYMP (ENSSAUG00010014687)	ENSSAUG00010014691	ENSSAUG00010014753	ENSSAUG00010014767	nots (ENSSAUG00010014783)	cct2 (ENSSAUG00010014786)	ENSSAUG00010014803	LGR5 (ENSSAUG00010014805)	rab21 (ENSSAUG00010014808)	PTPRR (ENSSAUG00010014830)	ENSSAUG00010015564	ENSSAUG00010015565	PTPRB (ENSSAUG00010015577)	KCNMB4 (ENSSAUG00010015663)	CNOT2 (ENSSAUG00010015687)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	53	ENSGT00940000168658.c	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00990000204250.c.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985	ENSGT01020000230588	ENSGT00390000004106	ENSGT00940000164058.j	ENSGT00390000017740.a.a	ENSGT00940000158692.f	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000003014	ENSGT00940000157777	ENSGT00940000164590	ENSGT00550000074930	ENSGT00530000063626.b	ENSGT00940000160214
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005019821	ENSLCRG00005019823	ENSLCRG00005019824	ENSLCRG00005019825	ENSLCRG00005000149	ENSLCRG00005000161	ENSLCRG00005000167	dyrk2 (ENSLCRG00005000185)	ENSLCRG00005000197	ENSLCRG00005000202	ENSLCRG00005000208	mdm1 (ENSLCRG00005000228)	ENSLCRG00005000257	cand1 (ENSLCRG00005000331)	grip1 (ENSLCRG00005000483)	lsm8 (ENSLCRG00005006195) #22	ENSLCRG00005006200	SHANK3 (ENSLCRG00005006205)	ENSLCRG00005006207	BEST3 (ENSLCRG00005006211)	nots (ENSLCRG00005006215)	cct2 (ENSLCRG00005006220)	ENSLCRG00005006228	ENSLCRG00005006234	ENSLCRG00005006238	ncapg (ENSLCRG00005006269)	fam184b (ENSLCRG00005007942)	ENSLCRG00005007948	APBB2 (ENSLCRG00005007955)	rbm47 (ENSLCRG00005008223)	ENSLCRG00005008232
European seabass	MODERN SPECIES	23	ENSDLAG00005018178	ENSDLAG00005018187	ENSDLAG00005018247	ENSDLAG00005028194	ENSDLAG00005018271	ENSDLAG00005018290	ENSDLAG00005018300	ENSDLAG00005018313	ENSDLAG00005031439	ENSDLAG00005035121	ENSDLAG00005016671	ENSDLAG00005018356	ENSDLAG00005019414	ENSDLAG00005022334	ENSDLAG00005033556	lsm8 (ENSDLAG00005013437) #22	ENSDLAG00005033155	ENSDLAG00005027667	ENSDLAG00005019449	ENSDLAG00005019462	ENSDLAG00005019492	ENSDLAG00005019539	ENSDLAG00005032101	ENSDLAG00005032010	ENSDLAG00005033064	ENSDLAG00005019886	ENSDLAG00005020005	ENSDLAG00005029172	parp12b (ENSDLAG00005020051)	ENSDLAG00005020079	mical3b (ENSDLAG00005020153)
Otomorpha	ANCESTRAL SPECIES	501														ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779
Otophysi	ANCESTRAL SPECIES	59	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00940000160733	ENSGT00940000164702.a	ENSGT01050000244882.a.a.a.a.a.e.a	ENSGT01050000244882.a.a.a.a.b	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00940000158848	ENSGT00940000158027	ENSGT00940000163017	ENSGT00530000063702.a.b	ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221.y	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00390000004697
Characiphysae	ANCESTRAL SPECIES	15	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00940000164702.a	ENSGT01050000244882.a.a.a.a.a.e.a	ENSGT01050000244882.a.a.a.a.b.a	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00940000158848	ENSGT00940000158027	ENSGT00940000163017	ENSGT00530000063702.a.b	ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221.y	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000155263
Channel catfish	MODERN SPECIES	10	ALDH1L2 (ENSIPUG00000020954)	c19h12orf45 (ENSIPUG00000020946)	slc41a2 (ENSIPUG00000020936)	chst11 (ENSIPUG00000020933)	nfyba (ENSIPUG00000020899)	hcfc2 (ENSIPUG00000020879)	AVPR1A (ENSIPUG00000020869)	srgap1b (ENSIPUG00000020780)	c19h12orf66 (ENSIPUG00000020767)	ipo8 (ENSIPUG00000020709)	tmtc1 (ENSIPUG00000020641)	ovch1 (ENSIPUG00000019912)	lmf2b (ENSIPUG00000019888)	kitlgb (ENSIPUG00000019860)	ENSIPUG00000019834	NAA38 (ENSIPUG00000019811) #22	tymp (ENSIPUG00000019794)	SHANK3 (ENSIPUG00000019738)	cdnf (ENSIPUG00000019730)	hspa14 (ENSIPUG00000019686)	dclre1c (ENSIPUG00000019674)	meig1 (ENSIPUG00000019657)	TMEM243 (ENSIPUG00000019635)	dmtf1 (ENSIPUG00000019599)	elapor2b (ENSIPUG00000019559)	tspan9b (ENSIPUG00000019480)	mical3b (ENSIPUG00000019442)	svopl (ENSIPUG00000019395)	ENSIPUG00000019359	parp12b (ENSIPUG00000019340)	sbf1 (ENSIPUG00000019200)
Characiphysae_b	ANCESTRAL SPECIES	47	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00940000164702.a	ENSGT01050000244882.a.a.a.a.a.e.a	ENSGT01050000244882.a.a.a.a.b.a	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00940000158848	ENSGT00940000158027	ENSGT00530000063702.a.b	ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221.y	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000155263
Characoidei	ANCESTRAL SPECIES	37	ENSGT00390000011355.b	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00940000164702.a	ENSGT01050000244882.a.a.a.a.b.a	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00940000158848	ENSGT00940000158027	ENSGT00530000063702.a.b	ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221.y	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000155263
Red-bellied piranha	MODERN SPECIES	58	samm50l (ENSPNAG00000010885)	ALDH1L2 (ENSPNAG00000010833)	nopchap1 (ENSPNAG00000010775)	SLC41A2 (ENSPNAG00000010763)	chst11 (ENSPNAG00000001433)	nfyba (ENSPNAG00000010697)	hcfc2 (ENSPNAG00000001424)	AVPR1A (ENSPNAG00000010650)	srgap1b (ENSPNAG00000010634)	kics2 (ENSPNAG00000010597)	ipo8 (ENSPNAG00000001408)	TMTC1 (ENSPNAG00000010454)	lmf2b (ENSPNAG00000010370)	kitlgb (ENSPNAG00000010308)	ENSPNAG00000010286	lsm8 (ENSPNAG00000010252) #22	TYMP (ENSPNAG00000010241)	SHANK3 (ENSPNAG00000010220)	cdnf (ENSPNAG00000010114)	hspa14 (ENSPNAG00000010084)	dclre1c (ENSPNAG00000010018)	meig1 (ENSPNAG00000009997)	tmem243b (ENSPNAG00000005357)	dmtf1 (ENSPNAG00000009954)	elapor2b (ENSPNAG00000009916)	tspan9b (ENSPNAG00000006806)	mical3b (ENSPNAG00000001338)	svopl (ENSPNAG00000009686)	ENSPNAG00000009636	parp12b (ENSPNAG00000009583)	sbf1 (ENSPNAG00000009463)
Mexicana tetra	MODERN SPECIES	22	ALDH1L2 (ENSAMXG00000018234)	ENSAMXG00000031955	nopchap1 (ENSAMXG00000030181)	SLC41A2 (ENSAMXG00000038359)	ENSAMXG00000041863	chst11 (ENSAMXG00000018186)	nfyba (ENSAMXG00000018177)	hcfc2 (ENSAMXG00000018152)	srgap1b (ENSAMXG00000018109)	kics2 (ENSAMXG00000039294)	ipo8 (ENSAMXG00000036026)	TMTC1 (ENSAMXG00000037911)	lmf2b (ENSAMXG00000009624)	kitlgb (ENSAMXG00000036015)	ENSAMXG00000009638	lsm8 (ENSAMXG00000042902) #22	ENSAMXG00000009657	SHANK3 (ENSAMXG00000009680)	cdnf (ENSAMXG00000009709)	hspa14 (ENSAMXG00000009721)	dclre1c (ENSAMXG00000038410)	meig1 (ENSAMXG00000009751)	tmem243b (ENSAMXG00000030221)	dmtf1 (ENSAMXG00000009768)	elapor2b (ENSAMXG00000009791)	tspan9b (ENSAMXG00000039271)	mical3b (ENSAMXG00000009859)	svopl (ENSAMXG00000009897)	ENSAMXG00000009908	parp12b (ENSAMXG00000009919)	sbf1 (ENSAMXG00000009954)
Electric eel	MODERN SPECIES	385	ENSEEEG00000004679	ALDH1L2 (ENSEEEG00000004617)	nopchap1 (ENSEEEG00000004606)	SLC41A2 (ENSEEEG00000004525)	chst11 (ENSEEEG00000004517)	nfyba (ENSEEEG00000004480)	hcfc2 (ENSEEEG00000004477)	avpr1ab (ENSEEEG00000004475)	srgap1b (ENSEEEG00000004459)	kics2 (ENSEEEG00000004455)	ipo8 (ENSEEEG00000004445)	TMTC1 (ENSEEEG00000004440)	lmf2b (ENSEEEG00000004369)	kitlgb (ENSEEEG00000004365)	ENSEEEG00000004364	lsm8 (ENSEEEG00000004363) #22	TYMP (ENSEEEG00000004340)	SHANK3 (ENSEEEG00000004338)	cdnf (ENSEEEG00000004337)	hspa14 (ENSEEEG00000004330)	dclre1c (ENSEEEG00000004327)	meig1 (ENSEEEG00000004326)	tmem243b (ENSEEEG00000004323)	dmtf1 (ENSEEEG00000004314)	elapor2b (ENSEEEG00000004308)	tspan9b (ENSEEEG00000004304)	ENSEEEG00000004302	ENSEEEG00000004300	ENSEEEG00000004296
Cyprinoidei	ANCESTRAL SPECIES	50	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00940000160733	ENSGT00940000164702.a	ENSGT01050000244882.a.a.a.a.a.e.a	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00940000158848	ENSGT00940000158027	ENSGT00940000163017	ENSGT00530000063702.a.b	ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221.y	ENSGT00940000156016	ENSGT00940000154983.c.b.s	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00530000064216
Cyprininae	ANCESTRAL SPECIES	193	ENSGT00940000158018.q	ENSGT00940000165155.c.a	ENSGT00950000183042.a.b.a.d	ENSGT00940000159167.s	ENSGT00940000154917.w.b	ENSGT00940000160733	ENSGT01050000244882.a.a.a.a.a.e.a.a	ENSGT00950000182824.a.a.a.a.b.b	ENSGT00390000009583.h	ENSGT00940000158848.b	ENSGT00940000158027.l	ENSGT00940000163017	ENSGT00530000063702.a.b.c	ENSGT00390000018272.j.c	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250.d	ENSGT00940000153561.b.b.g.b.b	ENSGT00390000007160.a.b.b	ENSGT00940000156380.r	ENSGT00940000157779.c	ENSGT00390000013550.q	ENSGT00390000010221.y.a	ENSGT00940000156016.g	ENSGT00940000154983.c.b.s.a	ENSGT00940000158225.i.a.m	ENSGT00940000155580.b.a.b.j	ENSGT00940000158632.e	ENSGT00530000063472.a.a	ENSGT00940000164581.A.a.b.b	ENSGT00530000064216
Cyprininae_a	ANCESTRAL SPECIES	155	ENSGT00940000158018.q	ENSGT00940000165155.c.a	ENSGT00950000183042.a.b.a.d	ENSGT00940000159167.s	ENSGT00940000154917.w.b	ENSGT00940000160733	ENSGT01050000244882.a.a.a.a.a.e.a.a	ENSGT00950000182824.a.a.a.a.b.b	ENSGT00390000009583.h	ENSGT00940000158848.b	ENSGT00940000158027.l	ENSGT00940000163017.n	ENSGT00530000063702.a.b.c	ENSGT00390000018272.j.c	ENSGT00940000167105.b	ENSGT00730000111212 #22	ENSGT00390000009250.d	ENSGT00940000153561.b.b.g.b.b	ENSGT00390000007160.a.b.b	ENSGT00940000156380.r	ENSGT00940000157779.c	ENSGT00390000013550.q	ENSGT00390000010221.y.a	ENSGT00940000156016.g	ENSGT00940000154983.c.b.s.a	ENSGT00940000158225.i.a.m	ENSGT00940000155580.b.a.b.j	ENSGT00940000158632.e	ENSGT00530000063472.a.a	ENSGT00940000164581.A.a.b.b	ENSGT00530000064216
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	32	samm50l (ENSSGRG00000043607)	ALDH1L2 (ENSSGRG00000043747)	nopchap1 (ENSSGRG00000043784)	SLC41A2 (ENSSGRG00000043792)	chst11 (ENSSGRG00000044129)	nfyba (ENSSGRG00000044130)	HCFC2 (ENSSGRG00000044132)	avpr1ab (ENSSGRG00000044134)	srgap1b (ENSSGRG00000044149)	kics2 (ENSSGRG00000044542)	ipo8 (ENSSGRG00000044544)	ovch1 (ENSSGRG00000044682)	lmf2b (ENSSGRG00000044684)	kitlgb (ENSSGRG00000044686)	ENSSGRG00000044687	lsm8 (ENSSGRG00000044691) #22	TYMP (ENSSGRG00000044688)	SHANK3 (ENSSGRG00000044719)	hspa14 (ENSSGRG00000044769)	dclre1c (ENSSGRG00000045084)	meig1 (ENSSGRG00000045085)	tmem243b (ENSSGRG00000045086)	tmem243b (ENSSGRG00000045088)	dmtf1 (ENSSGRG00000045089)	elapor2b (ENSSGRG00000045090)	tspan9b (ENSSGRG00000045091)	mical3b (ENSSGRG00000045092)	svopl (ENSSGRG00000045103)	ENSSGRG00000045116	parp12b (ENSSGRG00000045118)	hsp90b1 (ENSSGRG00000045145)
Golden-line barbel	MODERN SPECIES	150	scube1 (ENSSGRG00000028424)	ALDH1L2 (ENSSGRG00000028268)	nopchap1 (ENSSGRG00000028265)	SLC41A2 (ENSSGRG00000028264)	chst11 (ENSSGRG00000028263)	nfyba (ENSSGRG00000028257)	hcfc2 (ENSSGRG00000028256)	avpr1ab (ENSSGRG00000028255)	ENSSGRG00000028254	kics2 (ENSSGRG00000028252)	ipo8 (ENSSGRG00000028178)	ovch1 (ENSSGRG00000028174)	lmf2b (ENSSGRG00000028163)	kitlgb (ENSSGRG00000028162)	ENSSGRG00000028161	lsm8 (ENSSGRG00000028158) #22	ENSSGRG00000028155	SHANK3 (ENSSGRG00000028148)	cdnf (ENSSGRG00000028147)	hspa14 (ENSSGRG00000027890)	dclre1c (ENSSGRG00000027883)	meig1 (ENSSGRG00000027831)	tmem243b (ENSSGRG00000027830)	dmtf1 (ENSSGRG00000027828)	elapor2b (ENSSGRG00000027576)	tspan9b (ENSSGRG00000027555)	mical3b (ENSSGRG00000026682)	svopl (ENSSGRG00000026665)	ENSSGRG00000026663	parp12b (ENSSGRG00000026658)	ENSSGRG00000026573
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	21	samm50l (ENSCARG00000007838)	ALDH1L2 (ENSCARG00000007907)	nopchap1 (ENSCARG00000008635)	SLC41A2 (ENSCARG00000008715)	chst11 (ENSCARG00000010200)	nfyba (ENSCARG00000010206)	avpr1ab (ENSCARG00000010242)	srgap1b (ENSCARG00000010281)	kics2 (ENSCARG00000010499)	ipo8 (ENSCARG00000010553)	TMTC1 (ENSCARG00000012159)	ENSCARG00000012265	lmf2b (ENSCARG00000012279)	kitlgb (ENSCARG00000012298)	ENSCARG00000012317	lsm8 (ENSCARG00000012330) #22	SHANK3 (ENSCARG00000012375)	hspa14 (ENSCARG00000012816)	cdnf (ENSCARG00000012895)	meig1 (ENSCARG00000012913)	tmem243b (ENSCARG00000012917)	dmtf1 (ENSCARG00000012927)	elapor2b (ENSCARG00000012999)	tspan9b (ENSCARG00000014107)	svopl (ENSCARG00000014286)	ENSCARG00000014310	ENSCARG00000014324	ENSCARG00000014328	ENSCARG00000014353	ENSCARG00000014615	fbxo18 (ENSCARG00000014629)
Goldfish	MODERN SPECIES	33	scube1 (ENSCARG00000024657)	samm50l (ENSCARG00000025697)	ALDH1L2 (ENSCARG00000025775)	nopchap1 (ENSCARG00000026246)	ENSCARG00000026276	chst11 (ENSCARG00000026950)	hcfc2 (ENSCARG00000026971)	avpr1ab (ENSCARG00000026991)	srgap1b (ENSCARG00000027085)	kics2 (ENSCARG00000028134)	ipo8 (ENSCARG00000028217)	TMTC1 (ENSCARG00000030729)	lmf2b (ENSCARG00000030955)	kitlgb (ENSCARG00000031137)	ENSCARG00000031164	lsm8 (ENSCARG00000031180) #22	TYMP (ENSCARG00000031202)	SHANK3 (ENSCARG00000031315)	cdnf (ENSCARG00000031566)	hspa14 (ENSCARG00000031605)	dclre1c (ENSCARG00000032234)	meig1 (ENSCARG00000033015)	tmem243b (ENSCARG00000033028)	dmtf1 (ENSCARG00000033050)	elapor2b (ENSCARG00000033260)	tspan9b (ENSCARG00000035989)	mical3b (ENSCARG00000048671)	svopl (ENSCARG00000049425)	ENSCARG00000049718	ENSCARG00000049802	ENSCARG00000049818
Zebrafish	MODERN SPECIES	19	ALDH1L2 (ENSDARG00000070230)	nopchap1 (ENSDARG00000077926)	SLC41A2 (ENSDARG00000073881)	chst11 (ENSDARG00000034375)	nfyba (ENSDARG00000039185)	hcfc2 (ENSDARG00000058127)	avpr1ab (ENSDARG00000045788)	srgap1b (ENSDARG00000045789)	kics2 (ENSDARG00000045790)	ipo8 (ENSDARG00000058159)	TMTC1 (ENSDARG00000063149)	ovch1 (ENSDARG00000016538)	lmf2b (ENSDARG00000025859)	kitlgb (ENSDARG00000058042)	ENSDARG00000088044	lsm8 (ENSDARG00000091656) #22	ENSDARG00000099821	SHANK3 (ENSDARG00000063054)	cdnf (ENSDARG00000075501)	hspa14 (ENSDARG00000058030)	dclre1c (ENSDARG00000045704)	meig1 (ENSDARG00000045705)	tmem243b (ENSDARG00000033179)	dmtf1 (ENSDARG00000025824)	elapor2b (ENSDARG00000004386)	ENSDARG00000114963	tspan9b (ENSDARG00000045706)	mical3b (ENSDARG00000094732)	svopl (ENSDARG00000057983)	ENSDARG00000063008	parp12b (ENSDARG00000057974)
Clupeiformes	ANCESTRAL SPECIES	366														ENSGT00390000018272.j	ENSGT00940000167105	ENSGT00730000111212 #22	ENSGT00390000009250	ENSGT00940000153561.b.b.g.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b	ENSGT00940000158382	ENSGT00940000167455
Atlantic herring	MODERN SPECIES	7	med21 (ENSCHAG00000012305)	stk38l (ENSCHAG00000011858)	BMAL2 (ENSCHAG00000011743)	pkp2 (ENSCHAG00000011682)	ENSCHAG00000011665	rassf8b (ENSCHAG00000011650)	nudt4b (ENSCHAG00000011637)	ENSCHAG00000011608	mrpl42 (ENSCHAG00000011586)	ENSCHAG00000011567	pwp1 (ENSCHAG00000010547)	ANO6 (ENSCHAG00000007784)	ints13 (ENSCHAG00000006399)	syt10 (ENSCHAG00000006363)	ENSCHAG00000006352	lsm8 (ENSCHAG00000006227) #22	TYMP (ENSCHAG00000006199)	SHANK3 (ENSCHAG00000006147)	cdnf (ENSCHAG00000006132)	hspa14 (ENSCHAG00000006082)	dclre1c (ENSCHAG00000005989)	si:dkeyp-38g8.5 (ENSCHAG00000005940)	ENSCHAG00000005929	epyc (ENSCHAG00000005838)	kera (ENSCHAG00000005832)	lum (ENSCHAG00000005825)	dcn (ENSCHAG00000005791)	ENSCHAG00000005779	btg1 (ENSCHAG00000005758)	ETV6 (ENSCHAG00000005684)	ENSCHAG00000005680
Denticle herring	MODERN SPECIES	6	blzf1 (ENSDCDG00000026170)	mrpl39 (ENSDCDG00000026174)	jam2a (ENSDCDG00000026176)	atp5pf (ENSDCDG00000026177)	GBGT1 (ENSDCDG00000026178)	ENSDCDG00000026187	ENSDCDG00000026199	ENSDCDG00000026200	snrpf (ENSDCDG00000026201)	ENSDCDG00000026203	apaf1 (ENSDCDG00000026223)	anks1b (ENSDCDG00000027841)	uhrf1bp1l (ENSDCDG00000027891)	kitlgb (ENSDCDG00000028439)	ENSDCDG00000028442	lsm8 (ENSDCDG00000028445) #22	TYMP (ENSDCDG00000028454)	SHANK3 (ENSDCDG00000028485)	cdnf (ENSDCDG00000028492)	hspa14 (ENSDCDG00000028503)	dclre1c (ENSDCDG00000028734)	si:dkeyp-38g8.5 (ENSDCDG00000030115)	epyc (ENSDCDG00000030120)	ENSDCDG00000030123	kera (ENSDCDG00000030133)	lum (ENSDCDG00000030135)	dcn (ENSDCDG00000030138)	ENSDCDG00000030155	btg1 (ENSDCDG00000030156)	fam3c (ENSDCDG00000030157) #31	ENSDCDG00000030158
Osteoglossiformes	ANCESTRAL SPECIES	376								ENSGT00940000160413	ENSGT00940000155993.l #12	ENSGT00950000183006.A.b.h #13	ENSGT00940000158022.j #15	ENSGT00950000183119.b ##16	ENSGT00390000000873.a.b #17	ENSGT00940000159231 #18	ENSGT00940000158293.p #21	ENSGT00730000111212 #22	ENSGT00940000163982	ENSGT00390000013208	ENSGT00940000160243	ENSGT00940000159926.p
P. kingsleyae	MODERN SPECIES	261	ENSPKIG00000005274	mest (ENSPKIG00000005413)	ucn3l (ENSPKIG00000005440)	ENSPKIG00000005453	ENSPKIG00000005475	slc35b4 (ENSPKIG00000005507)	LRGUK (ENSPKIG00000005557)	exoc4 (ENSPKIG00000005678)	plxna4 (ENSPKIG00000005741)	ENSPKIG00000005801	mkln1 (ENSPKIG00000005833)	net1 (ENSPKIG00000005936)	ENSPKIG00000006003	asb13a.1 (ENSPKIG00000006016)	ASB13 (ENSPKIG00000006056)	lsm8 (ENSPKIG00000006092) #22	ENSPKIG00000006110	ENSPKIG00000006142	ENSPKIG00000006161	ENSPKIG00000006186
Asian bonytongue	MODERN SPECIES	13	MGAT4C (ENSSFOG00015004917)	TMTC3 (ENSSFOG00015004876)	ENSSFOG00015032341	dusp6 (ENSSFOG00015004851)	cep41 (ENSSFOG00015004844)	cpa1 (ENSSFOG00015004832)	ENSSFOG00015004801	tes (ENSSFOG00015004788) #12	cav2 (ENSSFOG00015004776) #13	cav1 (ENSSFOG00015026979) ##14	met (ENSSFOG00015004721) #15	ENSSFOG00015004665 ##16	ST7 (ENSSFOG00015004605) #17	wnt2 (ENSSFOG00015004572) #18	CTTNBP2 (ENSSFOG00015004449) #21	LSM8 (ENSSFOG00015027761) #22	calua (ENSSFOG00015004362)	tnpo3 (ENSSFOG00015004256)	IRF5 (ENSSFOG00015004188)	KCP (ENSSFOG00015003960)	atp6v1f (ENSSFOG00015003935)	ENSSFOG00015003902	ENSSFOG00015003882	IMPDH1 (ENSSFOG00015003842)	ENSSFOG00015003791	ENSSFOG00015003784	LRRC4 (ENSSFOG00015027758)	capn9 (ENSSFOG00015003663)	FMN2 (ENSSFOG00015003637)	GREM2 (ENSSFOG00015003622)	ENSSFOG00015003613
Spotted gar	MODERN SPECIES	674	copg2 (ENSLOCG00000015612)	mest (ENSLOCG00000015610)	cep41 (ENSLOCG00000015609)	cpa1 (ENSLOCG00000015607)	ENSLOCG00000015604	tes (ENSLOCG00000015603) #12	cav2 (ENSLOCG00000015600) #13	cav1 (ENSLOCG00000015597) ##14	met (ENSLOCG00000015595) #15	ENSLOCG00000015593 ##16	st7 (ENSLOCG00000015591) #17	wnt2 (ENSLOCG00000015590) #18	asz1 (ENSLOCG00000015587) #19	cftr (ENSLOCG00000015585) #20	CTTNBP2 (ENSLOCG00000015582) #21	lsm8 (ENSLOCG00000015580) #22	ANKRD26 (ENSLOCG00000015575)	atp6v1f (ENSLOCG00000015574)	ATP6V1FNB (ENSLOCG00000015573)	ENSLOCG00000015570	KCP (ENSLOCG00000015566)	ENSLOCG00000015564	irf5 (ENSLOCG00000015563)	tnpo3 (ENSLOCG00000015556)	opn1sw1 (ENSLOCG00000015553)	opn1sw1 (ENSLOCG00000015552)	calua (ENSLOCG00000015549)	ENSLOCG00000015548	ENSLOCG00000015547	impdh1a (ENSLOCG00000015544)	ENSLOCG00000015543
Reedfish	MODERN SPECIES		mest (ENSECRG00000010706)	cep41 (ENSECRG00000010718)	CPA1 (ENSECRG00000010734)	CPA1 (ENSECRG00000010751)	tes (ENSECRG00000010759) #12	cav2 (ENSECRG00000010766) #13	cav1 (ENSECRG00000010774) ##14	met (ENSECRG00000010782) #15	ENSECRG00000010798 ##16	st7 (ENSECRG00000010843) #17	wnt2 (ENSECRG00000010952) #18	asz1 (ENSECRG00000010962) #19	cftr (ENSECRG00000011130) #20	ENSECRG00000013120 #21	ENSECRG00000013151 #21	lsm8 (ENSECRG00000013166) #22	ENSECRG00000013191	ENSECRG00000013243	atp6v1f (ENSECRG00000013258)	ENSECRG00000013280	ENSECRG00000013312	KCP (ENSECRG00000013392)	irf5 (ENSECRG00000013532)	tnpo3 (ENSECRG00000013547)	opn1sw1 (ENSECRG00000013590)	calub (ENSECRG00000013667)	ENSECRG00000013695	impdh1a (ENSECRG00000013797)	ENSECRG00000013892	si:dkey-5i3.5 (ENSECRG00000013909)	rbm28 (ENSECRG00000013936)
Elephant shark	MODERN SPECIES	1520	nrcama (ENSCMIG00000012578)	samm50 (ENSCMIG00000012211)	parvb (ENSCMIG00000012109)	parvg (ENSCMIG00000012080)	wdr91 (ENSCMIG00000012050)	ENSCMIG00000012023	ENSCMIG00000012019	ENSCMIG00000011857 #32	aass (ENSCMIG00000011782) #33	fezf1 (ENSCMIG00000011752) #34	CADPS2 (ENSCMIG00000011225) #35	ada2a (ENSCMIG00000010998)	CECR2 (ENSCMIG00000010991)	ENSCMIG00000010983	ENSCMIG00000010941	lsm8 (ENSCMIG00000010930) #22	CTTNBP2 (ENSCMIG00000010925) #21	cftr (ENSCMIG00000010365) #20	ENSCMIG00000010135 #19	ENSCMIG00000010133	wnt2 (ENSCMIG00000010129) #18	st7 (ENSCMIG00000010102) #17	capza2 (ENSCMIG00000010030) ##16	MET (ENSCMIG00000009867) #15	ENSCMIG00000009810 #14	cav2 (ENSCMIG00000009808) #13	tes (ENSCMIG00000009794) #12	ENSCMIG00000009790 #11	tfec (ENSCMIG00000009784) #11	mdfic (ENSCMIG00000009780) #10	foxp2 (ENSCMIG00000009647) #9