Chordata	ANCESTRAL SPECIES																	ENSGT00510000047334 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00510000047334 #22
Gnathostomata	ANCESTRAL SPECIES	14		ENSGT01030000234566.e.b.b.a	ENSGT00980000198746	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156	ENSGT00520000055616.a	ENSGT00940000155843	ENSGT00970000197061	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000160117	ENSGT00940000153190.B.a
Euteleostomi	ANCESTRAL SPECIES	34	ENSGT00980000198746	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000160117
Sarcopterygii	ANCESTRAL SPECIES	52	ENSGT01030000234566.e.b.b.a	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000167196	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Amniota	ANCESTRAL SPECIES		ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Mammalia	ANCESTRAL SPECIES	7	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Theria	ANCESTRAL SPECIES	15	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Glires	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.n.b	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000153527.c.a.a.b	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.o	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.A.n
Marmotini	ANCESTRAL SPECIES	28	ENSGT00940000153527.c.a.a.b	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.o	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.a	ENSGT00940000162409.b
Marmotini_b	ANCESTRAL SPECIES	13	ENSGT00940000153527.c.a.a.b	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.n.a	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.a	ENSGT00940000162409.b
Arctic ground squirrel	MODERN SPECIES	1121																EED (ENSUPAG00010001408) #22
Squirrel	MODERN SPECIES	98	PRCP (ENSSTOG00000026707)	DDIAS (ENSSTOG00000004978)	RAB30 (ENSSTOG00000020966)	PCF11 (ENSSTOG00000005515)	ANKRD42 (ENSSTOG00000001620)	CCDC90B (ENSSTOG00000001632)	ENSSTOG00000024205	DLG2 (ENSSTOG00000002895)	TMEM126B (ENSSTOG00000002952)	ENSSTOG00000016101	CREBZF (ENSSTOG00000002975)	CCDC89 (ENSSTOG00000002976)	SYTL2 (ENSSTOG00000027973)	CCDC83 (ENSSTOG00000008671)	PICALM (ENSSTOG00000008689)	EED (ENSSTOG00000004680) #22	HIKESHI (ENSSTOG00000004702)	CCDC81 (ENSSTOG00000014479)	ENSSTOG00000028574	ME3 (ENSSTOG00000014488)	PRSS23 (ENSSTOG00000007434)	FZD4 (ENSSTOG00000007437)
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000006557	PRCP (ENSMMMG00000006496)	DDIAS (ENSMMMG00000006475)	RAB30 (ENSMMMG00000006458)	PCF11 (ENSMMMG00000006414)	ANKRD42 (ENSMMMG00000006331)	CCDC90B (ENSMMMG00000006292)	ENSMMMG00000006288	DLG2 (ENSMMMG00000005928)	TMEM126B (ENSMMMG00000005835)	ENSMMMG00000005829	CCDC89 (ENSMMMG00000005814)	ENSMMMG00000005468	CCDC83 (ENSMMMG00000005426)	PICALM (ENSMMMG00000005144)	EED (ENSMMMG00000005118) #22	HIKESHI (ENSMMMG00000005096)	CCDC81 (ENSMMMG00000005061)	ME3 (ENSMMMG00000004996)	PRSS23 (ENSMMMG00000004975)	FZD4 (ENSMMMG00000004931)	TMEM135 (ENSMMMG00000004893)	RAB38 (ENSMMMG00000004867)	CTSC (ENSMMMG00000004793)	GRM5 (ENSMMMG00000004503)	TYR (ENSMMMG00000004445)	NOX4 (ENSMMMG00000004402)	ENSMMMG00000004374	FOLH1 (ENSMMMG00000004192)
Eurasian red squirrel	MODERN SPECIES	2	RAB30 (ENSSVLG00005015677)	PCF11 (ENSSVLG00005015739)	ANKRD42 (ENSSVLG00005015819)	ENSSVLG00005015896	ENSSVLG00005015927	ENSSVLG00005015977	ENSSVLG00005016059	DLG2 (ENSSVLG00005016472)	TMEM126B (ENSSVLG00005019236)	TMEM126A (ENSSVLG00005019268)	CREBZF (ENSSVLG00005019339)	CCDC89 (ENSSVLG00005019395)	SYTL2 (ENSSVLG00005019752)	CCDC83 (ENSSVLG00005020010)	PICALM (ENSSVLG00005020135)	EED (ENSSVLG00005020425) #22	HIKESHI (ENSSVLG00005020558)	CCDC81 (ENSSVLG00005020655)	ENSSVLG00005021006	ME3 (ENSSVLG00005021021)	ENSSVLG00005021162	ENSSVLG00005021180	PRSS23 (ENSSVLG00005021223)	FZD4 (ENSSVLG00005021251)	TMEM135 (ENSSVLG00005021306)	RAB38 (ENSSVLG00005021462)	CTSC (ENSSVLG00005021500)	GRM5 (ENSSVLG00005021581)	ENSSVLG00005021721	TYR (ENSSVLG00005021737)	NOX4 (ENSSVLG00005021836)
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.n.b.b	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.n.b.b	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.n.b.a.a.b	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	90	RAB30 (ENSODEG00000003833)	PCF11 (ENSODEG00000003874)	ANKRD42 (ENSODEG00000003920)	CCDC90B (ENSODEG00000003995)	DLG2 (ENSODEG00000004167)	ENSODEG00000004281	TMEM126B (ENSODEG00000004299)	ENSODEG00000004318	CREBZF (ENSODEG00000004328)	CCDC89 (ENSODEG00000004335)	ENSODEG00000004345	ENSODEG00000004377	CCDC83 (ENSODEG00000004398)	PICALM (ENSODEG00000004438)	ENSODEG00000004459	ENSODEG00000004489 #22	ENSODEG00000005068	CCDC81 (ENSODEG00000005105)	ME3 (ENSODEG00000005138)	PRSS23 (ENSODEG00000019151)	FZD4 (ENSODEG00000005182)	TMEM135 (ENSODEG00000005219)
Degu	MODERN SPECIES	53	DDX47 (ENSODEG00000012890)	APOLD1 (ENSODEG00000010534)	CDKN1B (ENSODEG00000012537)	GPR19 (ENSODEG00000013191)	CREBL2 (ENSODEG00000009860)	ENSODEG00000019647	DUSP16 (ENSODEG00000009500)	ENSODEG00000008969	MANSC1 (ENSODEG00000009259)	LRP6 (ENSODEG00000008930)	BCL2L14 (ENSODEG00000008991)	ETV6 (ENSODEG00000009759)	ENSODEG00000009522	ENSODEG00000008835	ENSODEG00000010368	ENSODEG00000009595 #22	ENSODEG00000010351	ENSODEG00000009496	ENSODEG00000009605	ENSODEG00000009202	CLEC12B (ENSODEG00000009413)	CLEC1B (ENSODEG00000009886)	CLEC1A (ENSODEG00000009200)	CLEC7A (ENSODEG00000008833)	TMEM52B (ENSODEG00000010426)	GABARAPL1 (ENSODEG00000010037)	ENSODEG00000009587	KLRD1 (ENSODEG00000010635)
Degu	MODERN SPECIES	131	POPDC3 (ENSODEG00000013364)	PREP (ENSODEG00000013267)	ENSODEG00000020071	ENSODEG00000013137	PRDM1 (ENSODEG00000012678)	ATG5 (ENSODEG00000012332)	CRYBG1 (ENSODEG00000013511)	RTN4IP1 (ENSODEG00000012956)	QRSL1 (ENSODEG00000012491)	ENSODEG00000014646	ENSODEG00000014020	ENSODEG00000013192	BEND3 (ENSODEG00000012604)	SOBP (ENSODEG00000014370)	SEC63 (ENSODEG00000012763)	ENSODEG00000014125 #22	ENSODEG00000014366	ENSODEG00000013551	NR2E1 (ENSODEG00000014374)	ENSODEG00000013844	AFG1L (ENSODEG00000014385)	ENSODEG00000014459	SESN1 (ENSODEG00000013348)	ENSODEG00000013880	MICAL1 (ENSODEG00000013443)	ZBTB24 (ENSODEG00000014058)	ENSODEG00000020129	GPR6 (ENSODEG00000020143)	WASF1 (ENSODEG00000012933)	CDC40 (ENSODEG00000012990)	METTL24 (ENSODEG00000013180)
Long-tailed chinchilla	MODERN SPECIES	121	DDIAS (ENSCLAG00000013506)	RAB30 (ENSCLAG00000014030)	ENSCLAG00000017890	PCF11 (ENSCLAG00000013830)	ANKRD42 (ENSCLAG00000015518)	CCDC90B (ENSCLAG00000015859)	ENSCLAG00000014879	DLG2 (ENSCLAG00000013708)	TMEM126B (ENSCLAG00000015945)	TMEM126A (ENSCLAG00000013581)	CREBZF (ENSCLAG00000014349)	CCDC89 (ENSCLAG00000018101)	ENSCLAG00000015658	CCDC83 (ENSCLAG00000013107)	PICALM (ENSCLAG00000014073)	EED (ENSCLAG00000014597) #22	HIKESHI (ENSCLAG00000015127)	CCDC81 (ENSCLAG00000015703)	ME3 (ENSCLAG00000014004)	PRSS23 (ENSCLAG00000014382)	FZD4 (ENSCLAG00000013230)	TMEM135 (ENSCLAG00000012648)	RAB38 (ENSCLAG00000013006)	CTSC (ENSCLAG00000015662)	ENSCLAG00000014570	TYR (ENSCLAG00000016284)	ENSCLAG00000013267	NOX4 (ENSCLAG00000014011)	FOLH1 (ENSCLAG00000014594)	NAALAD2 (ENSCLAG00000012474)	ENSCLAG00000014963
Guinea pig	MODERN SPECIES	40	NARS2 (ENSCPOG00000002639)	TENM4 (ENSCPOG00000002931)	PRCP (ENSCPOG00000030619)	DDIAS (ENSCPOG00000013049)	RAB30 (ENSCPOG00000005047)	PCF11 (ENSCPOG00000004103)	ANKRD42 (ENSCPOG00000011236)	CCDC90B (ENSCPOG00000011822)	DLG2 (ENSCPOG00000010885)	TMEM126B (ENSCPOG00000000924)	TMEM126A (ENSCPOG00000032709)	CREBZF (ENSCPOG00000000925)	ENSCPOG00000006998	CCDC83 (ENSCPOG00000015279)	PICALM (ENSCPOG00000020758)	EED (ENSCPOG00000001815) #22	HIKESHI (ENSCPOG00000020182)	CCDC81 (ENSCPOG00000004853)	ME3 (ENSCPOG00000004861)	PRSS23 (ENSCPOG00000031160)	FZD4 (ENSCPOG00000014369)	TMEM135 (ENSCPOG00000033735)	RAB38 (ENSCPOG00000033635)	CTSC (ENSCPOG00000014848)	GRM5 (ENSCPOG00000009056)	ENSCPOG00000039497	TYR (ENSCPOG00000010608)	NOX4 (ENSCPOG00000040335)	FOLH1 (ENSCPOG00000003797)	NAALAD2 (ENSCPOG00000038440)	CHORDC1 (ENSCPOG00000022614)
Naked mole-rat female	MODERN SPECIES	24	ANKRD42 (ENSHGLG00000007952)	ENSHGLG00000014010	ENSHGLG00000043756	ENSHGLG00000046380	ENSHGLG00000042096	DLG2 (ENSHGLG00000004449)	ENSHGLG00000037235	ENSHGLG00000003500	ENSHGLG00000003233	CREBZF (ENSHGLG00000003083)	CCDC89 (ENSHGLG00000037872)	ENSHGLG00000002340	CCDC83 (ENSHGLG00000036065)	PICALM (ENSHGLG00000001052)	ENSHGLG00000001667	EED (ENSHGLG00000001511) #22	ENSHGLG00000041908	CCDC81 (ENSHGLG00000001095)	ENSHGLG00000038302	ENSHGLG00000001103	ME3 (ENSHGLG00000001044)	ENSHGLG00000000902	PRSS23 (ENSHGLG00000047569)	FZD4 (ENSHGLG00000000698)	ENSHGLG00000032437	ENSHGLG00000043753	TMEM135 (ENSHGLG00000001739)	ENSHGLG00000045425	ENSHGLG00000034306	RAB38 (ENSHGLG00000041890)	CTSC (ENSHGLG00000001420)
Rodentia_B	ANCESTRAL SPECIES	33	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Kangaroo rat	MODERN SPECIES	341	ENSDORG00000003131	ENSDORG00000009384	ENSDORG00000010504	Pcf11 (ENSDORG00000010050)	Ankrd42 (ENSDORG00000013726)	Ccdc90b (ENSDORG00000009418)	Dlg2 (ENSDORG00000010409)	Tmem126b (ENSDORG00000006407)	Tmem126a (ENSDORG00000026208)	ENSDORG00000006410	ENSDORG00000025554	Ccdc83 (ENSDORG00000006094)	Picalm (ENSDORG00000006095)	ENSDORG00000024919	ENSDORG00000027843	Eed (ENSDORG00000004240) #22	Hikeshi (ENSDORG00000026855)	Ccdc81 (ENSDORG00000004452)	ENSDORG00000028501	Me3 (ENSDORG00000004453)	Prss23 (ENSDORG00000023881)	Fzd4 (ENSDORG00000025486)	Tmem135 (ENSDORG00000011193)	ENSDORG00000028149	ENSDORG00000029361	Rab38 (ENSDORG00000002058)	Ctsc (ENSDORG00000014120)	Grm5 (ENSDORG00000001327)	ENSDORG00000024265	Tyr (ENSDORG00000002350)
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a
Muroidea	ANCESTRAL SPECIES	12	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a
Murinae	ANCESTRAL SPECIES		ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b
Mus	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00900000143322	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00900000143322	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a
Mus_B	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00900000143322	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00900000143322	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b
spretus	MODERN SPECIES	16	Prcp (MGP_SPRETEiJ_G0031104)	Ddias (MGP_SPRETEiJ_G0031103)	Rab30 (MGP_SPRETEiJ_G0031102)	Pcf11 (MGP_SPRETEiJ_G0031101)	Ankrd42 (MGP_SPRETEiJ_G0031100)	Ccdc90b (MGP_SPRETEiJ_G0031099)	Dlg2 (MGP_SPRETEiJ_G0031098)	Tmem126b (MGP_SPRETEiJ_G0031097)	Tmem126a (MGP_SPRETEiJ_G0031096)	Crebzf (MGP_SPRETEiJ_G0031095)	Ccdc89 (MGP_SPRETEiJ_G0031094)	MGP_SPRETEiJ_G0031093	Ccdc83 (MGP_SPRETEiJ_G0031092)	Picalm (MGP_SPRETEiJ_G0031091)	MGP_SPRETEiJ_G0031090	Eed (MGP_SPRETEiJ_G0031089) #22	Hikeshi (MGP_SPRETEiJ_G0031088)	Ccdc81 (MGP_SPRETEiJ_G0031087)	Me3 (MGP_SPRETEiJ_G0031086)	MGP_SPRETEiJ_G0031085	Prss23 (MGP_SPRETEiJ_G0031084)	Fzd4 (MGP_SPRETEiJ_G0031083)	Tmem135 (MGP_SPRETEiJ_G0031082)	Rab38 (MGP_SPRETEiJ_G0031081)	Ctsc (MGP_SPRETEiJ_G0031080)	Grm5 (MGP_SPRETEiJ_G0031079)	Tyr (MGP_SPRETEiJ_G0031078)	Nox4 (MGP_SPRETEiJ_G0031077)	MGP_SPRETEiJ_G0031076	MGP_SPRETEiJ_G0031075	Folh1 (MGP_SPRETEiJ_G0031074)
Steppe mouse	MODERN SPECIES	3267									Tmem126a (ENSMSIG00000004649)	Crebzf (ENSMSIG00000004643)	Ccdc89 (ENSMSIG00000004633)	ENSMSIG00000004302	Ccdc83 (ENSMSIG00000004142)	Picalm (ENSMSIG00000002381)	ENSMSIG00000002305	Eed (ENSMSIG00000002163) #22	Hikeshi (ENSMSIG00000002062)	Ccdc81 (ENSMSIG00000002033)	Me3 (ENSMSIG00000001983)	Prss23 (ENSMSIG00000001970)	Fzd4 (ENSMSIG00000001959)	Tmem135 (ENSMSIG00000001854)	Rab38 (ENSMSIG00000001797)	Ctsc (ENSMSIG00000001732)	Grm5 (ENSMSIG00000001662)	Tyr (ENSMSIG00000001626)	ENSMSIG00000001617	ENSMSIG00000001407	ENSMSIG00000001350	Vmn2r78 (ENSMSIG00000001291)	Vmn2r77 (ENSMSIG00000001225)
Mouse	MODERN SPECIES	16	Fam181b (ENSMUSG00000051515)	Prcp (ENSMUSG00000061119)	Ddias (ENSMUSG00000030641)	Rab30 (ENSMUSG00000030643)	Pcf11 (ENSMUSG00000041328)	Ankrd42 (ENSMUSG00000041343)	Ccdc90b (ENSMUSG00000030613)	Dlg2 (ENSMUSG00000052572)	Tmem126b (ENSMUSG00000030614)	Tmem126a (ENSMUSG00000030615)	Crebzf (ENSMUSG00000051451)	Ccdc89 (ENSMUSG00000044362)	Sytl2 (ENSMUSG00000030616)	Ccdc83 (ENSMUSG00000030617)	Picalm (ENSMUSG00000039361)	Eed (ENSMUSG00000030619) #22	Hikeshi (ENSMUSG00000062797)	Ccdc81 (ENSMUSG00000039391)	Me3 (ENSMUSG00000030621)	Prss23 (ENSMUSG00000039405)	Fzd4 (ENSMUSG00000049791)	Tmem135 (ENSMUSG00000039428)	Rab38 (ENSMUSG00000030559)	Ctsc (ENSMUSG00000030560)	Grm5 (ENSMUSG00000049583)	Tyr (ENSMUSG00000004651)	Nox4 (ENSMUSG00000030562)	Vmn2r79 (ENSMUSG00000090362)	Vmn2r78 (ENSMUSG00000091962)	Vmn2r77 (ENSMUSG00000090949)	Folh1 (ENSMUSG00000001773)
Ryukyu mouse	MODERN SPECIES	16	Prcp (MGP_CAROLIEiJ_G0029994)	Ddias (MGP_CAROLIEiJ_G0029993)	Rab30 (MGP_CAROLIEiJ_G0029992)	Pcf11 (MGP_CAROLIEiJ_G0029991)	Ankrd42 (MGP_CAROLIEiJ_G0029990)	Ccdc90b (MGP_CAROLIEiJ_G0029989)	Dlg2 (MGP_CAROLIEiJ_G0029988)	Tmem126b (MGP_CAROLIEiJ_G0029987)	MGP_CAROLIEiJ_G0029986	Crebzf (MGP_CAROLIEiJ_G0029985)	Ccdc89 (MGP_CAROLIEiJ_G0029984)	MGP_CAROLIEiJ_G0029983	Ccdc83 (MGP_CAROLIEiJ_G0029982)	Picalm (MGP_CAROLIEiJ_G0029981)	MGP_CAROLIEiJ_G0029980	Eed (MGP_CAROLIEiJ_G0029979) #22	Hikeshi (MGP_CAROLIEiJ_G0029978)	Ccdc81 (MGP_CAROLIEiJ_G0029977)	Me3 (MGP_CAROLIEiJ_G0029976)	MGP_CAROLIEiJ_G0029975	Prss23 (MGP_CAROLIEiJ_G0029974)	Fzd4 (MGP_CAROLIEiJ_G0029973)	Tmem135 (MGP_CAROLIEiJ_G0029972)	Rab38 (MGP_CAROLIEiJ_G0029971)	Ctsc (MGP_CAROLIEiJ_G0029970)	Grm5 (MGP_CAROLIEiJ_G0029969)	Tyr (MGP_CAROLIEiJ_G0029968)	Nox4 (MGP_CAROLIEiJ_G0029967)	MGP_CAROLIEiJ_G0029966	Folh1 (MGP_CAROLIEiJ_G0029965)	Or14c39 (MGP_CAROLIEiJ_G0029964)
Shrew mouse	MODERN SPECIES		Prcp (MGP_PahariEiJ_G0013214)	Ddias (MGP_PahariEiJ_G0013213)	Rab30 (MGP_PahariEiJ_G0013212)	Pcf11 (MGP_PahariEiJ_G0013211)	Ankrd42 (MGP_PahariEiJ_G0013210)	Ccdc90b (MGP_PahariEiJ_G0013209)	Dlg2 (MGP_PahariEiJ_G0013208)	MGP_PahariEiJ_G0013207	MGP_PahariEiJ_G0013206	Crebzf (MGP_PahariEiJ_G0013205)	Ccdc89 (MGP_PahariEiJ_G0013204)	MGP_PahariEiJ_G0013203	Ccdc83 (MGP_PahariEiJ_G0013202)	Picalm (MGP_PahariEiJ_G0013201)	MGP_PahariEiJ_G0013200	Eed (MGP_PahariEiJ_G0013199) #22	Hikeshi (MGP_PahariEiJ_G0013198)	Ccdc81 (MGP_PahariEiJ_G0013197)	MGP_PahariEiJ_G0013196	MGP_PahariEiJ_G0013195	Prss23 (MGP_PahariEiJ_G0013194)	Fzd4 (MGP_PahariEiJ_G0013193)	Tmem135 (MGP_PahariEiJ_G0013192)	Rab38 (MGP_PahariEiJ_G0013191)	Ctsc (MGP_PahariEiJ_G0013190)	Grm5 (MGP_PahariEiJ_G0013189)	Tyr (MGP_PahariEiJ_G0013188)	Nox4 (MGP_PahariEiJ_G0013187)	MGP_PahariEiJ_G0013186	MGP_PahariEiJ_G0013185	MGP_PahariEiJ_G0013184
Rat	MODERN SPECIES		Fam181b (ENSRNOG00000069065)	Prcp (ENSRNOG00000010630)	Ddias (ENSRNOG00000022521)	Rab30 (ENSRNOG00000010224)	Pcf11 (ENSRNOG00000009891)	Ankrd42 (ENSRNOG00000009664)	Ccdc90b (ENSRNOG00000009462)	Dlg2 (ENSRNOG00000022635)	Tmem126b (ENSRNOG00000022732)	Tmem126a (ENSRNOG00000022748)	Crebzf (ENSRNOG00000018987)	LOC100911776 (ENSRNOG00000048071)	Sytl2 (ENSRNOG00000030776)	Ccdc83 (ENSRNOG00000052220)	Picalm (ENSRNOG00000018322)	Eed (ENSRNOG00000017509) #22	Hikeshi (ENSRNOG00000017383)	LOC102549852 (ENSRNOG00000022941)	Ccdc81 (ENSRNOG00000033733)	Me3 (ENSRNOG00000017311)	Prss23 (ENSRNOG00000017307)	Fzd4 (ENSRNOG00000063590)	Tmem135 (ENSRNOG00000016815)	Rab38 (ENSRNOG00000016769)	Ctsc (ENSRNOG00000016496)	Grm5 (ENSRNOG00000016429)	Tyr (ENSRNOG00000016421)	Nox4 (ENSRNOG00000013925)	ENSRNOG00000068544	Vom2r-ps67 (ENSRNOG00000033507)	Folh1 (ENSRNOG00000013770)
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000158099.e	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a
Cricetidae_B	ANCESTRAL SPECIES	26	ENSGT00940000154730.b	ENSGT00980000198692	ENSGT00940000158099.f	ENSGT00940000158099.e	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a	ENSGT01090000260024.A.a.b.a.a
Northern American deer mouse	MODERN SPECIES		P2ry6 (ENSPEMG00000021012)	P2ry2 (ENSPEMG00000031410)	Fchsd2 (ENSPEMG00000022517)	Atg16l2 (ENSPEMG00000021325)	Stard10 (ENSPEMG00000020876)	Arap1 (ENSPEMG00000021221)	ENSPEMG00000030063	Pde2a (ENSPEMG00000026748)	ENSPEMG00000029000	ENSPEMG00000025401	ENSPEMG00000019643	Ccdc89 (ENSPEMG00000013266)	ENSPEMG00000019500	ENSPEMG00000028604	Picalm (ENSPEMG00000020088)	Eed (ENSPEMG00000019315) #22	Hikeshi (ENSPEMG00000020488)	Ccdc81 (ENSPEMG00000017793)	Me3 (ENSPEMG00000001307)	ENSPEMG00000027884	Prss23 (ENSPEMG00000015023)	Fzd4 (ENSPEMG00000000061)	Tmem135 (ENSPEMG00000009485)	ENSPEMG00000014375	Rab38 (ENSPEMG00000022645)	Ctsc (ENSPEMG00000023091)	Grm5 (ENSPEMG00000022095)	Tyr (ENSPEMG00000023104)	Nox4 (ENSPEMG00000021901)	Folh1 (ENSPEMG00000022051)	ENSPEMG00000025927
Prairie vole	MODERN SPECIES	9	Or6f1 (ENSMOCG00000007713)	Or13g1 (ENSMOCG00000006498)	Fam181b (ENSMOCG00000019765)	ENSMOCG00000013603	ENSMOCG00000012985	Prcp (ENSMOCG00000012404)	ENSMOCG00000009821	Pcf11 (ENSMOCG00000001560)	Ankrd42 (ENSMOCG00000000292)	Ccdc90b (ENSMOCG00000020349)	ENSMOCG00000020913	ENSMOCG00000019058	Ccdc89 (ENSMOCG00000008424)	ENSMOCG00000014020	Picalm (ENSMOCG00000010921)	Eed (ENSMOCG00000000447) #22	ENSMOCG00000019586	Ccdc81 (ENSMOCG00000007045)	Me3 (ENSMOCG00000005796)	Prss23 (ENSMOCG00000022033)	ENSMOCG00000007773	Tenm4 (ENSMOCG00000007967)	Nars2 (ENSMOCG00000004938)	Gab2 (ENSMOCG00000016973)	Usp35 (ENSMOCG00000015178)	Kctd21 (ENSMOCG00000009332)	Alg8 (ENSMOCG00000018035)	Ndufc2 (ENSMOCG00000014768)	Thrsp (ENSMOCG00000014398)	Ints4 (ENSMOCG00000015641)	Aamdc (ENSMOCG00000013242)
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00980000198692	ENSGT00940000158099.e	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666
Chinese hamster chok1gshd	MODERN SPECIES	101	Rab30 (ENSCGRG00001021787)	Pcf11 (ENSCGRG00001014596)	Ankrd42 (ENSCGRG00001009333)	Ccdc90b (ENSCGRG00001017562)	ENSCGRG00001006228	ENSCGRG00001004849	ENSCGRG00001020141	Tmem126b (ENSCGRG00001018676)	ENSCGRG00001000040	Crebzf (ENSCGRG00001009481)	Ccdc89 (ENSCGRG00001000722)	ENSCGRG00001008518	Ccdc83 (ENSCGRG00001016931)	ENSCGRG00001005565	Picalm (ENSCGRG00001023935)	Eed (ENSCGRG00001002220) #22	Hikeshi (ENSCGRG00001021205)	Ccdc81 (ENSCGRG00001021860)	Me3 (ENSCGRG00001000087)	Prss23 (ENSCGRG00001008698)	Fzd4 (ENSCGRG00001017396)	Tmem135 (ENSCGRG00001023218)	Rab38 (ENSCGRG00001014873)	Ctsc (ENSCGRG00001006267)	Grm5 (ENSCGRG00001009560)	Tyr (ENSCGRG00001019343)	Nox4 (ENSCGRG00001000979)	Folh1 (ENSCGRG00001000536)	ENSCGRG00001012337	ENSCGRG00001014707	ENSCGRG00001011155
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	660	ENSMAUG00000017096	Prcp (ENSMAUG00000018982)	Rab30 (ENSMAUG00000008179)	Pcf11 (ENSMAUG00000021407)	Ankrd42 (ENSMAUG00000015024)	Ccdc90b (ENSMAUG00000021266)	Dlg2 (ENSMAUG00000012498)	Tmem126b (ENSMAUG00000014289)	Tmem126a (ENSMAUG00000016002)	Crebzf (ENSMAUG00000010774)	Ccdc89 (ENSMAUG00000005748)	ENSMAUG00000017590	ENSMAUG00000000412	Ccdc83 (ENSMAUG00000008122)	Picalm (ENSMAUG00000011448)	ENSMAUG00000019033 #22	ENSMAUG00000014854	Ccdc81 (ENSMAUG00000001944)	ENSMAUG00000007180	ENSMAUG00000012259	Prss23 (ENSMAUG00000010049)
Golden Hamster	MODERN SPECIES	447																ENSMAUG00000007232 #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	1254	ENSNGAG00000005012	Prcp (ENSNGAG00000017611)	Ddias (ENSNGAG00000019404)	Rab30 (ENSNGAG00000018930)	Pcf11 (ENSNGAG00000007823)	Ankrd42 (ENSNGAG00000001127)	Ccdc90b (ENSNGAG00000018955)	Dlg2 (ENSNGAG00000013593)	Tmem126a (ENSNGAG00000000853)	ENSNGAG00000016917	Crebzf (ENSNGAG00000013879)	Ccdc89 (ENSNGAG00000017955)	ENSNGAG00000007001	Ccdc83 (ENSNGAG00000002487)	Picalm (ENSNGAG00000011828)	Eed (ENSNGAG00000020336) #22	Hikeshi (ENSNGAG00000017432)	Ccdc81 (ENSNGAG00000011335)	ENSNGAG00000000347	Me3 (ENSNGAG00000020611)	Prss23 (ENSNGAG00000014789)	Fzd4 (ENSNGAG00000011833)	ENSNGAG00000015588	Rab38 (ENSNGAG00000012189)	Ctsc (ENSNGAG00000004920)	Grm5 (ENSNGAG00000000178)	Tyr (ENSNGAG00000013719)
Lesser Egyptian jerboa	MODERN SPECIES	65	Rab30 (ENSJJAG00000020064)	ENSJJAG00000012172	Ankrd42 (ENSJJAG00000023528)	ENSJJAG00000023792	ENSJJAG00000011365	ENSJJAG00000014690	ENSJJAG00000010286	Dlg2 (ENSJJAG00000023731)	Tmem126b (ENSJJAG00000012522)	Tmem126a (ENSJJAG00000008852)	Crebzf (ENSJJAG00000010759)	ENSJJAG00000010545	ENSJJAG00000017139	Ccdc83 (ENSJJAG00000017603)	ENSJJAG00000001614	Eed (ENSJJAG00000016121) #22	Hikeshi (ENSJJAG00000012398)	ENSJJAG00000022293	Ccdc81 (ENSJJAG00000011496)	Me3 (ENSJJAG00000022815)	Prss23 (ENSJJAG00000010057)	Fzd4 (ENSJJAG00000008823)	Tmem135 (ENSJJAG00000013241)	Rab38 (ENSJJAG00000020660)	Ctsc (ENSJJAG00000010794)	Grm5 (ENSJJAG00000024148)	ENSJJAG00000003405	Tyr (ENSJJAG00000005553)	Nox4 (ENSJJAG00000022117)	Folh1 (ENSJJAG00000021601)	ENSJJAG00000021619
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Rabbit	MODERN SPECIES		PCF11 (ENSOCUG00000004462)	ENSOCUG00000030982	CCDC90B (ENSOCUG00000026829)	ANKRD42 (ENSOCUG00000004475)	ENSOCUG00000035571	ENSOCUG00000038610	DLG2 (ENSOCUG00000010534)	ENSOCUG00000016529	ENSOCUG00000016534	CREBZF (ENSOCUG00000016544)	CCDC89 (ENSOCUG00000016547)	SYTL2 (ENSOCUG00000013753)	ENSOCUG00000033217	CCDC83 (ENSOCUG00000009770)	PICALM (ENSOCUG00000023809)	EED (ENSOCUG00000021263) #22	HIKESHI (ENSOCUG00000013108)	ENSOCUG00000037210	CCDC81 (ENSOCUG00000007318)	ENSOCUG00000027723	ME3 (ENSOCUG00000012005)	ENSOCUG00000031072	ENSOCUG00000036239	PRSS23 (ENSOCUG00000004137)	FZD4 (ENSOCUG00000006445)	TMEM135 (ENSOCUG00000000713)	ENSOCUG00000032429	ENSOCUG00000014522	CTSC (ENSOCUG00000014527)	ENSOCUG00000012817	ENSOCUG00000029319
Pika	MODERN SPECIES	3533																ENSOPRG00000013844 #22	HIKESHI (ENSOPRG00000013869)	CCDC81 (ENSOPRG00000013884)	ME3 (ENSOPRG00000013901)	PRSS23 (ENSOPRG00000013925)	ENSOPRG00000013932
Tree shrew	MODERN SPECIES	5448																EED (ENSTBEG00000008428) #22	ENSTBEG00000009192
Primates	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Simiiformes	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621
Hominidae	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336
Pan	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621
Chimpanzee	MODERN SPECIES	2	PCF11 (ENSPTRG00000004126)	ANKRD42 (ENSPTRG00000004128)	CCDC90B (ENSPTRG00000004129)	DLG2 (ENSPTRG00000004131)	ENSPTRG00000045384	ENSPTRG00000043496	TMEM126B (ENSPTRG00000004133)	ENSPTRG00000049899	TMEM126A (ENSPTRG00000004134)	CREBZF (ENSPTRG00000046588)	CCDC89 (ENSPTRG00000028447)	SYTL2 (ENSPTRG00000004137)	CCDC83 (ENSPTRG00000004139)	PICALM (ENSPTRG00000004141)	ENSPTRG00000050577	EED (ENSPTRG00000047379) #22	HIKESHI (ENSPTRG00000004144)	CCDC81 (ENSPTRG00000004145)	ME3 (ENSPTRG00000004146)	ENSPTRG00000052198	ENSPTRG00000047974	FZD4 (ENSPTRG00000004148)	TMEM135 (ENSPTRG00000052201)	ENSPTRG00000043512	RAB38 (ENSPTRG00000004151)	CTSC (ENSPTRG00000004152)	GRM5 (ENSPTRG00000004153)	ENSPTRG00000050427	TYR (ENSPTRG00000004155)	NOX4 (ENSPTRG00000004156)	FOLH1 (ENSPTRG00000004159)
Bonobo	MODERN SPECIES	2	RAB30 (ENSPPAG00000031604)	PCF11 (ENSPPAG00000009517)	ANKRD42 (ENSPPAG00000030979)	ENSPPAG00000037079	CCDC90B (ENSPPAG00000031300)	DLG2 (ENSPPAG00000040464)	ENSPPAG00000030712	ENSPPAG00000035286	TMEM126A (ENSPPAG00000030419)	CREBZF (ENSPPAG00000039767)	CCDC89 (ENSPPAG00000024671)	SYTL2 (ENSPPAG00000031499)	CCDC83 (ENSPPAG00000018209)	PICALM (ENSPPAG00000036162)	ENSPPAG00000040243	EED (ENSPPAG00000042452) #22	HIKESHI (ENSPPAG00000037523)	CCDC81 (ENSPPAG00000033187)	ME3 (ENSPPAG00000027117)	ENSPPAG00000030561	ENSPPAG00000040183	FZD4 (ENSPPAG00000039896)	TMEM135 (ENSPPAG00000017375)	ENSPPAG00000029704	ENSPPAG00000025428	RAB38 (ENSPPAG00000037174)	CTSC (ENSPPAG00000039886)	GRM5 (ENSPPAG00000028715)	ENSPPAG00000037909	TYR (ENSPPAG00000028935)	ENSPPAG00000043311
Human	MODERN SPECIES	2	FAM181B (ENSG00000182103)	PRCP (ENSG00000137509)	DDIAS (ENSG00000165490)	RAB30 (ENSG00000137502)	PCF11 (ENSG00000165494)	ANKRD42 (ENSG00000137494)	CCDC90B (ENSG00000137500)	DLG2 (ENSG00000150672)	TMEM126B (ENSG00000171204)	TMEM126A (ENSG00000171202)	CREBZF (ENSG00000137504)	CCDC89 (ENSG00000179071)	SYTL2 (ENSG00000137501)	CCDC83 (ENSG00000150676)	PICALM (ENSG00000073921)	EED (ENSG00000074266) #22	HIKESHI (ENSG00000149196)	CCDC81 (ENSG00000149201)	ME3 (ENSG00000151376)	PRSS23 (ENSG00000150687)	FZD4 (ENSG00000174804)	TMEM135 (ENSG00000166575)	RAB38 (ENSG00000123892)	CTSC (ENSG00000109861)	GRM5 (ENSG00000168959)	TYR (ENSG00000077498)	NOX4 (ENSG00000086991)	TRIM77 (ENSG00000214414)	TRIM49 (ENSG00000168930)	TRIM64B (ENSG00000189253)	TRIM49D1 (ENSG00000223417)
Gorilla	MODERN SPECIES	2	ANKRD42 (ENSGGOG00000005988)	CCDC90B (ENSGGOG00000009045)	ENSGGOG00000041726	DLG2 (ENSGGOG00000034908)	ENSGGOG00000038080	ENSGGOG00000023558	ENSGGOG00000022340	TMEM126B (ENSGGOG00000002136)	TMEM126A (ENSGGOG00000027742)	CREBZF (ENSGGOG00000006942)	CCDC89 (ENSGGOG00000001828)	SYTL2 (ENSGGOG00000001830)	CCDC83 (ENSGGOG00000002315)	PICALM (ENSGGOG00000009116)	ENSGGOG00000024786	EED (ENSGGOG00000007517) #22	HIKESHI (ENSGGOG00000023168)	CCDC81 (ENSGGOG00000012103)	ME3 (ENSGGOG00000009837)	ENSGGOG00000037978	ENSGGOG00000043394	FZD4 (ENSGGOG00000037053)	TMEM135 (ENSGGOG00000002577)	ENSGGOG00000038789	ENSGGOG00000043000	RAB38 (ENSGGOG00000008277)	CTSC (ENSGGOG00000002117)	GRM5 (ENSGGOG00000008825)	ENSGGOG00000024146	ENSGGOG00000043221	TYR (ENSGGOG00000009122)
Orangutan	MODERN SPECIES	2	PRCP (ENSPPYG00000003731)	DDIAS (ENSPPYG00000003732)	RAB30 (ENSPPYG00000041373)	PCF11 (ENSPPYG00000003734)	ANKRD42 (ENSPPYG00000003735)	CCDC90B (ENSPPYG00000003736)	DLG2 (ENSPPYG00000003737)	TMEM126A (ENSPPYG00000003738)	CREBZF (ENSPPYG00000003740)	CCDC89 (ENSPPYG00000003741)	SYTL2 (ENSPPYG00000003742)	CCDC83 (ENSPPYG00000003743)	ENSPPYG00000038885	PICALM (ENSPPYG00000003744)	ENSPPYG00000032045	EED (ENSPPYG00000003745) #22	HIKESHI (ENSPPYG00000003746)	CCDC81 (ENSPPYG00000003747)	ENSPPYG00000036300	ME3 (ENSPPYG00000003748)	PRSS23 (ENSPPYG00000003749)	FZD4 (ENSPPYG00000003750)	TMEM135 (ENSPPYG00000003751)	RAB38 (ENSPPYG00000003752)	CTSC (ENSPPYG00000003753)	GRM5 (ENSPPYG00000003754)	TYR (ENSPPYG00000003755)	NOX4 (ENSPPYG00000003756)	FOLH1 (ENSPPYG00000003757)	TRIM77 (ENSPPYG00000003758)	ENSPPYG00000004089
Gibbon	MODERN SPECIES	5	PCF11 (ENSNLEG00000016535)	ENSNLEG00000033396	ANKRD42 (ENSNLEG00000016524)	CCDC90B (ENSNLEG00000016478)	ENSNLEG00000035779	ENSNLEG00000028515	DLG2 (ENSNLEG00000016423)	TMEM126B (ENSNLEG00000016414)	TMEM126A (ENSNLEG00000016408)	CREBZF (ENSNLEG00000031587)	CCDC89 (ENSNLEG00000019101)	SYTL2 (ENSNLEG00000016320)	CCDC83 (ENSNLEG00000016302)	PICALM (ENSNLEG00000016266)	ENSNLEG00000016264	EED (ENSNLEG00000016231) #22	HIKESHI (ENSNLEG00000016224)	CCDC81 (ENSNLEG00000016195)	ME3 (ENSNLEG00000016167)	ENSNLEG00000027369	FZD4 (ENSNLEG00000034493)	ENSNLEG00000028034	TMEM135 (ENSNLEG00000016150)	ENSNLEG00000031173	RAB38 (ENSNLEG00000016147)	CTSC (ENSNLEG00000016103)	ENSNLEG00000033791	GRM5 (ENSNLEG00000016099)	TYR (ENSNLEG00000016083)	NOX4 (ENSNLEG00000015992)	ENSNLEG00000015991
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b.e	ENSGT00520000055616.b.f	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Pig-tailed macaque	MODERN SPECIES	423	PCF11 (ENSMNEG00000038813)	ANKRD42 (ENSMNEG00000044572)	ENSMNEG00000042667	CCDC90B (ENSMNEG00000040708)	DLG2 (ENSMNEG00000032861)	ENSMNEG00000035794	ENSMNEG00000041407	TMEM126B (ENSMNEG00000038548)	TMEM126A (ENSMNEG00000033570)	CREBZF (ENSMNEG00000038550)	CCDC89 (ENSMNEG00000023949)	SYTL2 (ENSMNEG00000012179)	CCDC83 (ENSMNEG00000042390)	PICALM (ENSMNEG00000029285)	ENSMNEG00000042451	EED (ENSMNEG00000027523) #22	HIKESHI (ENSMNEG00000035878)	CCDC81 (ENSMNEG00000033044)	ME3 (ENSMNEG00000015271)	ENSMNEG00000038710	FZD4 (ENSMNEG00000029276)	TMEM135 (ENSMNEG00000045398)	ENSMNEG00000030149	ENSMNEG00000043896	RAB38 (ENSMNEG00000027238)	CTSC (ENSMNEG00000030747)	ENSMNEG00000018809	GRM5 (ENSMNEG00000034358)	TYR (ENSMNEG00000036611)	NOX4 (ENSMNEG00000044084)	FOLH1 (ENSMNEG00000038167)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.a	ENSGT00520000055616.b.f	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT01100000263509.a.a.b.a.a.b	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT00940000163419.g
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000053378	ENSMFAG00000056564	ENSMFAG00000046206	ENSMFAG00000059686	ENSMFAG00000052763	ENSMFAG00000037137	TMEM126A (ENSMFAG00000000919)	ENSMFAG00000059074	CCDC89 (ENSMFAG00000015719)	SYTL2 (ENSMFAG00000032887)	ENSMFAG00000056194	CCDC83 (ENSMFAG00000002840)	PICALM (ENSMFAG00000002978)	ENSMFAG00000059633	ENSMFAG00000049118	EED (ENSMFAG00000045418) #22	HIKESHI (ENSMFAG00000035626)	CCDC81 (ENSMFAG00000003801)	ME3 (ENSMFAG00000037695)	PRSS23 (ENSMFAG00000036910)	FZD4 (ENSMFAG00000034431)	TMEM135 (ENSMFAG00000016730)	RAB38 (ENSMFAG00000044903)	ENSMFAG00000049993	CTSC (ENSMFAG00000031718)	GRM5 (ENSMFAG00000034520)	ENSMFAG00000057700	ENSMFAG00000051174	ENSMFAG00000048157	ENSMFAG00000056499	TYR (ENSMFAG00000045366)
Rhesus	MODERN SPECIES	5	ENSMMUG00000061242	DLG2 (ENSMMUG00000007921)	ENSMMUG00000061300	ENSMMUG00000060971	ENSMMUG00000051769	ENSMMUG00000050245	ENSMMUG00000050119	TMEM126B (ENSMMUG00000016540)	TMEM126A (ENSMMUG00000057373)	CREBZF (ENSMMUG00000016543)	CCDC89 (ENSMMUG00000063415)	SYTL2 (ENSMMUG00000012449)	ENSMMUG00000058091	CCDC83 (ENSMMUG00000019617)	PICALM (ENSMMUG00000019618)	EED (ENSMMUG00000019621) #22	HIKESHI (ENSMMUG00000017730)	CCDC81 (ENSMMUG00000013045)	ME3 (ENSMMUG00000013055)	PRSS23 (ENSMMUG00000003717)	FZD4 (ENSMMUG00000004048)	TMEM135 (ENSMMUG00000010229)	RAB38 (ENSMMUG00000016006)	CTSC (ENSMMUG00000022139)	GRM5 (ENSMMUG00000010184)	ENSMMUG00000051617	TYR (ENSMMUG00000011115)	NOX4 (ENSMMUG00000011116)	FOLH1 (ENSMMUG00000012596)	TRIM77 (ENSMMUG00000048340)	ENSMMUG00000051536
Cercopithecinae_b	ANCESTRAL SPECIES	32	ENSGT00440000034259.b	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621
Cercopithecinae_d	ANCESTRAL SPECIES	27	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00550000074935.v	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT01050000244956.b.c.a.b	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Sooty mangabey	MODERN SPECIES	196					DLG2 (ENSCATG00000039862)	ENSCATG00000035140	ENSCATG00000034074	TMEM126B (ENSCATG00000029506)	TMEM126A (ENSCATG00000029388)	CREBZF (ENSCATG00000036954)	CCDC89 (ENSCATG00000016164)	SYTL2 (ENSCATG00000031643)	CCDC83 (ENSCATG00000006895)	PICALM (ENSCATG00000044739)	ENSCATG00000037926	EED (ENSCATG00000032277) #22	HIKESHI (ENSCATG00000032118)	CCDC81 (ENSCATG00000042506)	ME3 (ENSCATG00000038267)	ENSCATG00000015649	FZD4 (ENSCATG00000012598)	TMEM135 (ENSCATG00000001206)	ENSCATG00000032850	ENSCATG00000034224	RAB38 (ENSCATG00000034576)	CTSC (ENSCATG00000028370)	ENSCATG00000017286	GRM5 (ENSCATG00000039645)	TYR (ENSCATG00000007854)	NOX4 (ENSCATG00000034813)	FOLH1 (ENSCATG00000030078)
Drill	MODERN SPECIES	912								ENSMLEG00000042181	TMEM126B (ENSMLEG00000038201)	TMEM126A (ENSMLEG00000034150)	CREBZF (ENSMLEG00000040560)	SYTL2 (ENSMLEG00000032099)	CCDC83 (ENSMLEG00000041777)	PICALM (ENSMLEG00000038207)	ENSMLEG00000035359	EED (ENSMLEG00000032137) #22	HIKESHI (ENSMLEG00000006177)	CCDC81 (ENSMLEG00000034883)	ME3 (ENSMLEG00000044075)	FZD4 (ENSMLEG00000040936)	ENSMLEG00000041504	TMEM135 (ENSMLEG00000029558)	ENSMLEG00000033478	ENSMLEG00000039077	RAB38 (ENSMLEG00000031633)	CTSC (ENSMLEG00000032637)	ENSMLEG00000026308	GRM5 (ENSMLEG00000042600)	TYR (ENSMLEG00000043191)	NOX4 (ENSMLEG00000040210)	FOLH1 (ENSMLEG00000044022)
Olive baboon	MODERN SPECIES	3	ENSPANG00000033818	CCDC90B (ENSPANG00000018014)	ANKRD42 (ENSPANG00000009554)	ENSPANG00000047282	ENSPANG00000048439	ENSPANG00000046399	ENSPANG00000042996	DLG2 (ENSPANG00000007863)	TMEM126B (ENSPANG00000014631)	TMEM126A (ENSPANG00000011636)	ENSPANG00000035892	CCDC89 (ENSPANG00000048782)	SYTL2 (ENSPANG00000010114)	CCDC83 (ENSPANG00000019126)	PICALM (ENSPANG00000019177)	EED (ENSPANG00000023331) #22	HIKESHI (ENSPANG00000006476)	CCDC81 (ENSPANG00000011943)	ENSPANG00000038398	ME3 (ENSPANG00000019664)	PRSS23 (ENSPANG00000001585)	FZD4 (ENSPANG00000007432)	TMEM135 (ENSPANG00000016447)	RAB38 (ENSPANG00000007862)	ENSPANG00000040539	CTSC (ENSPANG00000006475)	ENSPANG00000041846	GRM5 (ENSPANG00000010013)	ENSPANG00000042320	TYR (ENSPANG00000050970)	NOX4 (ENSPANG00000011635)
Vervet Monkey	MODERN SPECIES		PRCP (ENSCSAG00000003715)	DDIAS (ENSCSAG00000003710)	RAB30 (ENSCSAG00000003704)	PCF11 (ENSCSAG00000003702)	ANKRD42 (ENSCSAG00000003699)	CCDC90B (ENSCSAG00000003693)	DLG2 (ENSCSAG00000003691)	TMEM126B (ENSCSAG00000003685)	TMEM126A (ENSCSAG00000003683)	CREBZF (ENSCSAG00000000613)	CCDC89 (ENSCSAG00000000612)	SYTL2 (ENSCSAG00000003677)	CCDC83 (ENSCSAG00000003666)	ENSCSAG00000000611	PICALM (ENSCSAG00000003661)	EED (ENSCSAG00000003653) #22	HIKESHI (ENSCSAG00000003649)	CCDC81 (ENSCSAG00000003644)	ME3 (ENSCSAG00000003640)	PRSS23 (ENSCSAG00000000610)	FZD4 (ENSCSAG00000003633)	TMEM135 (ENSCSAG00000003625)	RAB38 (ENSCSAG00000003620)	CTSC (ENSCSAG00000003618)	GRM5 (ENSCSAG00000003616)	TYR (ENSCSAG00000003613)	NOX4 (ENSCSAG00000003604)	FOLH1 (ENSCSAG00000003592)	TRIM77 (ENSCSAG00000003587)	ENSCSAG00000003583	ENSCSAG00000003576
Rhinopithecus	ANCESTRAL SPECIES	265					ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00390000008688.j	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00940000167729	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946
Golden snub-nosed monkey	MODERN SPECIES	3048													CCDC83 (ENSRROG00000029691)	PICALM (ENSRROG00000042437)	ENSRROG00000043397	EED (ENSRROG00000033300) #22	HIKESHI (ENSRROG00000044938)	CCDC81 (ENSRROG00000034536)	ME3 (ENSRROG00000029877)	FZD4 (ENSRROG00000009179)	TMEM135 (ENSRROG00000026706)	ENSRROG00000029825	ENSRROG00000029619
Black snub-nosed monkey	MODERN SPECIES	1515				ENSRBIG00000024137	ENSRBIG00000034832	ENSRBIG00000039292	ENSRBIG00000038408	TMEM126B (ENSRBIG00000027901)	TMEM126A (ENSRBIG00000044867)	CREBZF (ENSRBIG00000033657)	SYTL2 (ENSRBIG00000027668)	CCDC83 (ENSRBIG00000041473)	PICALM (ENSRBIG00000028102)	ENSRBIG00000006505	ENSRBIG00000031252	EED (ENSRBIG00000043003) #22	HIKESHI (ENSRBIG00000030285)	CCDC81 (ENSRBIG00000044110)	ENSRBIG00000006153	ME3 (ENSRBIG00000038261)	PRSS23 (ENSRBIG00000011058)	FZD4 (ENSRBIG00000037688)	TMEM135 (ENSRBIG00000040442)	ENSRBIG00000008442
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00940000154847.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00910000148212	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00940000157141	ENSGT00390000008820.e.b.b	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440
Cebidae	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00910000148212	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00940000157141	ENSGT00390000008820.e.b.b	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440
Cebidae_a	ANCESTRAL SPECIES	73	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00940000157141	ENSGT00390000008820.e.b.b	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440
Capuchin	MODERN SPECIES	442									TMEM126B (ENSCCAG00000030490)	ENSCCAG00000016707	CREBZF (ENSCCAG00000018390)	SYTL2 (ENSCCAG00000027399)	CCDC83 (ENSCCAG00000036956)	ENSCCAG00000035690	PICALM (ENSCCAG00000032962)	EED (ENSCCAG00000010220) #22	HIKESHI (ENSCCAG00000031050)	CCDC81 (ENSCCAG00000035713)	ME3 (ENSCCAG00000023036)	FZD4 (ENSCCAG00000018431)	ENSCCAG00000023395	TMEM135 (ENSCCAG00000015547)
Bolivian squirrel monkey	MODERN SPECIES	111	PCF11 (ENSSBOG00000014934)	ANKRD42 (ENSSBOG00000029776)	CCDC90B (ENSSBOG00000031087)	ENSSBOG00000032196	ENSSBOG00000030642	DLG2 (ENSSBOG00000034048)	ENSSBOG00000002491	TMEM126B (ENSSBOG00000029314)	ENSSBOG00000031600	ENSSBOG00000031353	CREBZF (ENSSBOG00000021121)	SYTL2 (ENSSBOG00000022671)	CCDC83 (ENSSBOG00000024146)	ENSSBOG00000023637	PICALM (ENSSBOG00000022605)	EED (ENSSBOG00000020361) #22	ENSSBOG00000035641	ENSSBOG00000026631	CCDC81 (ENSSBOG00000029201)	ME3 (ENSSBOG00000022193)	ENSSBOG00000026687	FZD4 (ENSSBOG00000026619)	TMEM135 (ENSSBOG00000020475)	RAB38 (ENSSBOG00000033877)	CTSC (ENSSBOG00000031425)	GRM5 (ENSSBOG00000029620)	ENSSBOG00000025801	TYR (ENSSBOG00000034806)	NOX4 (ENSSBOG00000031083)	FOLH1 (ENSSBOG00000030773)	TRIM77 (ENSSBOG00000029725)
Marmoset	MODERN SPECIES	2	ENSCJAG00000087263	ENSCJAG00000074858	ENSCJAG00000036997	ENSCJAG00000082882	ENSCJAG00000085884	ENSCJAG00000070224	DLG2 (ENSCJAG00000014492)	TMEM126B (ENSCJAG00000014472)	ENSCJAG00000014466	ENSCJAG00000043995	CCDC89 (ENSCJAG00000014446)	SYTL2 (ENSCJAG00000014359)	CCDC83 (ENSCJAG00000014339)	ENSCJAG00000086029	PICALM (ENSCJAG00000014262)	EED (ENSCJAG00000014209) #22	HIKESHI (ENSCJAG00000041472)	CCDC81 (ENSCJAG00000012092)	ME3 (ENSCJAG00000000649)	ENSCJAG00000079494	FZD4 (ENSCJAG00000000657)	ENSCJAG00000076219	ENSCJAG00000086105	ENSCJAG00000086260	TMEM135 (ENSCJAG00000000661)	ENSCJAG00000055696	ENSCJAG00000080496	RAB38 (ENSCJAG00000000671)	CTSC (ENSCJAG00000000679)	ENSCJAG00000032975	GRM5 (ENSCJAG00000000695)
Mas night monkey	MODERN SPECIES	575	ENSANAG00000028391	PCF11 (ENSANAG00000037724)	ENSANAG00000024905	ENSANAG00000029298	DLG2 (ENSANAG00000031143)	ENSANAG00000032550	ENSANAG00000037228	ENSANAG00000037632	ENSANAG00000029976	TMEM126B (ENSANAG00000025056)	ENSANAG00000026301	CREBZF (ENSANAG00000034171)	SYTL2 (ENSANAG00000028146)	CCDC83 (ENSANAG00000032623)	PICALM (ENSANAG00000019901)	EED (ENSANAG00000011962) #22	HIKESHI (ENSANAG00000022595)	ENSANAG00000038314	CCDC81 (ENSANAG00000036233)	ME3 (ENSANAG00000036581)	FZD4 (ENSANAG00000020728)	ENSANAG00000033368	TMEM135 (ENSANAG00000038000)
Tarsier	MODERN SPECIES	1516														CCDC83 (ENSTSYG00000008696)	PICALM (ENSTSYG00000004088)	EED (ENSTSYG00000005232) #22	HIKESHI (ENSTSYG00000003299)	CCDC81 (ENSTSYG00000007216)	ENSTSYG00000028689
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b	ENSGT00520000055616.a.`b	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b	ENSGT00520000055616.a.`b	ENSGT00390000016589	ENSGT00910000148212	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A.l	ENSGT00940000163440	ENSGT00940000160005.A.k
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	27	GAB2 (ENSMICG00000015054)	USP35 (ENSMICG00000038576)	KCTD21 (ENSMICG00000046215)	ALG8 (ENSMICG00000015000)	NDUFC2 (ENSMICG00000041506)	KCTD14 (ENSMICG00000044183)	ENSMICG00000043874	ENSMICG00000027485	ENSMICG00000009022	TMEM126B (ENSMICG00000029604)	TMEM126A (ENSMICG00000005510)	CREBZF (ENSMICG00000033683)	SYTL2 (ENSMICG00000005519)	CCDC83 (ENSMICG00000017254)	PICALM (ENSMICG00000017261)	ENSMICG00000010728 #22	HIKESHI (ENSMICG00000000946)	CCDC81 (ENSMICG00000000948)	ENSMICG00000037743	ME3 (ENSMICG00000000951)	PRSS23 (ENSMICG00000026361)	FZD4 (ENSMICG00000012533)	TMEM135 (ENSMICG00000013387)	RAB38 (ENSMICG00000028169)	CTSC (ENSMICG00000002445)	GRM5 (ENSMICG00000002451)	TYR (ENSMICG00000037850)	NOX4 (ENSMICG00000014398)	ENSMICG00000042150	ENSMICG00000013580	NAALAD2 (ENSMICG00000015630)
Mouse lemur	MODERN SPECIES	169	MTMR1 (ENSMICG00000004344)	ENSMICG00000015345	CD99L2 (ENSMICG00000004350)	GPR50 (ENSMICG00000034484)	ENSMICG00000028536	ENSMICG00000045791	ENSMICG00000004639	ENSMICG00000029869	ENSMICG00000047372	ENSMICG00000045027	ENSMICG00000033654	ENSMICG00000047230	ENSMICG00000032768	ENSMICG00000045504	IDS (ENSMICG00000002745)	ENSMICG00000037019 #22	ENSMICG00000030676	ENSMICG00000036932	AFF2 (ENSMICG00000011580)	ENSMICG00000004052	ENSMICG00000032523	ENSMICG00000045581	FMR1 (ENSMICG00000000838)	ADGRG4 (ENSMICG00000035091)	MAP7D3 (ENSMICG00000037426)	ENSMICG00000009342	SLC9A6 (ENSMICG00000011746)	ENSMICG00000047091	INTS6L (ENSMICG00000014196)	ENSMICG00000031214	ENSMICG00000043469
Lemuriformes_a	ANCESTRAL SPECIES	133	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b	ENSGT00520000055616.a.`b	ENSGT00910000148212	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163858	ENSGT00940000160005.A.k	ENSGT00940000163440
Coquerels sifaka	MODERN SPECIES	237		PRCP (ENSPCOG00000027887)	ENSPCOG00000027868	RAB30 (ENSPCOG00000017316)	PCF11 (ENSPCOG00000000051)	ANKRD42 (ENSPCOG00000026124)	CCDC90B (ENSPCOG00000021879)	DLG2 (ENSPCOG00000019969)	TMEM126B (ENSPCOG00000020968)	TMEM126A (ENSPCOG00000020359)	ENSPCOG00000015922	SYTL2 (ENSPCOG00000009450)	CCDC83 (ENSPCOG00000008593)	PICALM (ENSPCOG00000026679)	ENSPCOG00000024002	EED (ENSPCOG00000022510) #22	HIKESHI (ENSPCOG00000028239)	CCDC81 (ENSPCOG00000024443)	ME3 (ENSPCOG00000027098)	FZD4 (ENSPCOG00000018933)	TMEM135 (ENSPCOG00000015029)	RAB38 (ENSPCOG00000020800)	CTSC (ENSPCOG00000001859)	ENSPCOG00000024115	GRM5 (ENSPCOG00000028721)	TYR (ENSPCOG00000016235)	NOX4 (ENSPCOG00000017092)	FOLH1 (ENSPCOG00000018014)	ENSPCOG00000017327	ENSPCOG00000024227	ENSPCOG00000023420
Greater bamboo lemur	MODERN SPECIES	625			ENSPSMG00000007219	ENSPSMG00000007223	TMEM126B (ENSPSMG00000007232)	ENSPSMG00000007247	ENSPSMG00000007260	CCDC89 (ENSPSMG00000007263)	SYTL2 (ENSPSMG00000007523)	CCDC83 (ENSPSMG00000007641)	ENSPSMG00000007653	PICALM (ENSPSMG00000008098)	ENSPSMG00000008423	ENSPSMG00000008429	ENSPSMG00000008449	EED (ENSPSMG00000008532) #22	HIKESHI (ENSPSMG00000008554)	CCDC81 (ENSPSMG00000008616)	ME3 (ENSPSMG00000008707)	PRSS23 (ENSPSMG00000008732)	FZD4 (ENSPSMG00000008734)	TMEM135 (ENSPSMG00000008862)	RAB38 (ENSPSMG00000008937)	CTSC (ENSPSMG00000008979)	GRM5 (ENSPSMG00000009090)	TYR (ENSPSMG00000009145)	NOX4 (ENSPSMG00000009300)	FOLH1 (ENSPSMG00000009438)	ENSPSMG00000009461	ENSPSMG00000009467	ENSPSMG00000009478
Bushbaby	MODERN SPECIES	116	RAB30 (ENSOGAG00000033189)	PCF11 (ENSOGAG00000001905)	ANKRD42 (ENSOGAG00000001906)	CCDC90B (ENSOGAG00000006817)	ENSOGAG00000026562	DLG2 (ENSOGAG00000010597)	ENSOGAG00000029637	ENSOGAG00000027183	ENSOGAG00000005403	CREBZF (ENSOGAG00000027039)	CCDC89 (ENSOGAG00000005407)	ENSOGAG00000030902	CCDC83 (ENSOGAG00000013946)	PICALM (ENSOGAG00000013950)	ENSOGAG00000029699	EED (ENSOGAG00000025611) #22	HIKESHI (ENSOGAG00000013958)	CCDC81 (ENSOGAG00000013961)	ENSOGAG00000025640	ME3 (ENSOGAG00000013965)	PRSS23 (ENSOGAG00000011479)	ENSOGAG00000032179	FZD4 (ENSOGAG00000011478)	TMEM135 (ENSOGAG00000013804)	ENSOGAG00000027554	ENSOGAG00000027235	RAB38 (ENSOGAG00000004961)	CTSC (ENSOGAG00000009168)	GRM5 (ENSOGAG00000003814)	ENSOGAG00000024204	NOX4 (ENSOGAG00000012261)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Carnivora	ANCESTRAL SPECIES	21	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Caniformia	ANCESTRAL SPECIES	17	ENSGT00910000147508	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Canidae	ANCESTRAL SPECIES	17	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00390000013440.d	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00390000013440.d	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00540000070023.c.b.a.a.a.b.a.a	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787.f.a	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Dog	MODERN SPECIES	13	RAB30 (ENSCAFG00845012071)	PCF11 (ENSCAFG00845011978)	ANKRD42 (ENSCAFG00845011790)	CCDC90B (ENSCAFG00845011734)	DLG2 (ENSCAFG00845009396)	ENSCAFG00845008703	ENSCAFG00845008664	ENSCAFG00845008649	TMEM126A (ENSCAFG00845008622)	ENSCAFG00845008580	CCDC89 (ENSCAFG00845008484)	SYTL2 (ENSCAFG00845008296)	CCDC83 (ENSCAFG00845008116)	ENSCAFG00845008086	PICALM (ENSCAFG00845007629)	HIKESHI (ENSCAFG00845007205) #22	HIKESHI (ENSCAFG00845006940)	CCDC81 (ENSCAFG00845006799)	ENSCAFG00845006757	ME3 (ENSCAFG00845006657)	ENSCAFG00845006591	PRSS23 (ENSCAFG00845006550)	FZD4 (ENSCAFG00845006501)	TMEM135 (ENSCAFG00845006352)	ENSCAFG00845006234	CTSC (ENSCAFG00845026305)	GRM5 (ENSCAFG00845025940)	TYR (ENSCAFG00845025889)	NOX4 (ENSCAFG00845025676)	FOLH1B (ENSCAFG00845025397)	ENSCAFG00845025305
Dingo	MODERN SPECIES	245	DDIAS (ENSCAFG00020017873)	RAB30 (ENSCAFG00020017865)	PCF11 (ENSCAFG00020017859)	ANKRD42 (ENSCAFG00020017853)	CCDC90B (ENSCAFG00020017849)	ENSCAFG00020017845	DLG2 (ENSCAFG00020017781)	TMEM126B (ENSCAFG00020017765)	ENSCAFG00020017763	TMEM126A (ENSCAFG00020017761)	CREBZF (ENSCAFG00020017758)	CCDC89 (ENSCAFG00020017757)	ENSCAFG00020017754	CCDC83 (ENSCAFG00020017748)	PICALM (ENSCAFG00020017726)	EED (ENSCAFG00020017721) #22	HIKESHI (ENSCAFG00020017719)	CCDC81 (ENSCAFG00020017715)	ENSCAFG00020017713	ME3 (ENSCAFG00020017304)	ENSCAFG00020017269	PRSS23 (ENSCAFG00020017267)	FZD4 (ENSCAFG00020017261)	TMEM135 (ENSCAFG00020017038)	RAB38 (ENSCAFG00020017027)	ENSCAFG00020016953	GRM5 (ENSCAFG00020016867)	TYR (ENSCAFG00020016835)	NOX4 (ENSCAFG00020016814)	FOLH1 (ENSCAFG00020016805)	ENSCAFG00020016778
Red fox	MODERN SPECIES	109	CCDC90B (ENSVVUG00000017501)	ENSVVUG00000017510	DLG2 (ENSVVUG00000017516)	ENSVVUG00000017560	ENSVVUG00000017562	TMEM126B (ENSVVUG00000017564)	ENSVVUG00000017568	TMEM126A (ENSVVUG00000017574)	CREBZF (ENSVVUG00000017577)	CCDC89 (ENSVVUG00000017579)	SYTL2 (ENSVVUG00000017582)	ENSVVUG00000017599	CCDC83 (ENSVVUG00000017603)	ENSVVUG00000017613	PICALM (ENSVVUG00000017626)	EED (ENSVVUG00000017672) #22	HIKESHI (ENSVVUG00000017683)	CCDC81 (ENSVVUG00000017688)	ME3 (ENSVVUG00000017722)	PRSS23 (ENSVVUG00000018688)	FZD4 (ENSVVUG00000018692)	TMEM135 (ENSVVUG00000018698)	RAB38 (ENSVVUG00000018733)	CTSC (ENSVVUG00000018738)	GRM5 (ENSVVUG00000018755)	TYR (ENSVVUG00000018778)	NOX4 (ENSVVUG00000018823)
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000158099	ENSGT00910000147508	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Mustelinae	ANCESTRAL SPECIES	25	ENSGT00940000158099	ENSGT00910000147508	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Ferret	MODERN SPECIES	259							TMEM126B (ENSMPUG00000009961)	TMEM126A (ENSMPUG00000009968)	CREBZF (ENSMPUG00000009974)	CCDC89 (ENSMPUG00000018686)	ENSMPUG00000009977	ENSMPUG00000009986	CCDC83 (ENSMPUG00000009994)	PICALM (ENSMPUG00000010037)	ENSMPUG00000010054	EED (ENSMPUG00000010062) #22	HIKESHI (ENSMPUG00000010148)	CCDC81 (ENSMPUG00000010154)	ENSMPUG00000018687	ME3 (ENSMPUG00000010166)	PRSS23 (ENSMPUG00000018688)	FZD4 (ENSMPUG00000010353)	ENSMPUG00000010356	TMEM135 (ENSMPUG00000010358)	RAB38 (ENSMPUG00000010366)	CTSC (ENSMPUG00000010370)	GRM5 (ENSMPUG00000010375)	TYR (ENSMPUG00000010381)	NOX4 (ENSMPUG00000010385)	FOLH1 (ENSMPUG00000010390)	NAALAD2 (ENSMPUG00000010401)
American mink	MODERN SPECIES	6	ENSNVIG00000001330	DDIAS (ENSNVIG00000001340)	RAB30 (ENSNVIG00000001367)	PCF11 (ENSNVIG00000001382)	ANKRD42 (ENSNVIG00000001421)	CCDC90B (ENSNVIG00000001464)	DLG2 (ENSNVIG00000001534)	TMEM126B (ENSNVIG00000002727)	T126A (ENSNVIG00000002771)	CREBZF (ENSNVIG00000002789)	CCDC89 (ENSNVIG00000002820)	SYTL2 (ENSNVIG00000002830)	CCDC83 (ENSNVIG00000003123)	PICALM (ENSNVIG00000003187)	ENSNVIG00000003391	EED (ENSNVIG00000003411) #22	CK073 (ENSNVIG00000003496)	CCDC81 (ENSNVIG00000003531)	ENSNVIG00000003607	ME3 (ENSNVIG00000003626)	ENSNVIG00000003666	PRS23 (ENSNVIG00000003676)	FZD4 (ENSNVIG00000003680)	TM135 (ENSNVIG00000003728)	ENSNVIG00000003901	E7ENT2 (ENSNVIG00000003909)	CTSC (ENSNVIG00000003934)	GRM5 (ENSNVIG00000004087)	ENSNVIG00000004099	ENSNVIG00000004112	TYR (ENSNVIG00000004130)
Ursidae	ANCESTRAL SPECIES	15	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00950000186113	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.m
Ursus	ANCESTRAL SPECIES	187									ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00950000186113	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
American black bear	MODERN SPECIES	5610																EED (ENSUAMG00000026103) #22	HIKESHI (ENSUAMG00000026104)
Polar bear	MODERN SPECIES	261										TMEM126B (ENSUMAG00000023888)	TMEM126A (ENSUMAG00000023889)	CCDC89 (ENSUMAG00000023891)	ENSUMAG00000023892	CCDC83 (ENSUMAG00000023895)	PICALM (ENSUMAG00000023896)	EED (ENSUMAG00000023898) #22	HIKESHI (ENSUMAG00000023906)	CCDC81 (ENSUMAG00000023908)	ENSUMAG00000023909	ENSUMAG00000023910	ENSUMAG00000023980	ENSUMAG00000024049	PRSS23 (ENSUMAG00000024052)	FZD4 (ENSUMAG00000024054)	TMEM135 (ENSUMAG00000024056)	RAB38 (ENSUMAG00000024064)	CTSC (ENSUMAG00000024065)	GRM5 (ENSUMAG00000024067)	TYR (ENSUMAG00000024078)	NOX4 (ENSUMAG00000024090)	FOLH1 (ENSUMAG00000024123)
Giant Panda	MODERN SPECIES	18	FAM181B (ENSAMEG00000030794)	PRCP (ENSAMEG00000005213)	DDIAS (ENSAMEG00000026663)	RAB30 (ENSAMEG00000005231)	PCF11 (ENSAMEG00000005241)	ANKRD42 (ENSAMEG00000005277)	CCDC90B (ENSAMEG00000005343)	DLG2 (ENSAMEG00000008686)	TMEM126B (ENSAMEG00000008700)	TMEM126A (ENSAMEG00000008703)	ENSAMEG00000026222	CCDC89 (ENSAMEG00000019526)	SYTL2 (ENSAMEG00000008713)	CCDC83 (ENSAMEG00000008762)	PICALM (ENSAMEG00000008778)	EED (ENSAMEG00000008806) #22	HIKESHI (ENSAMEG00000008810)	CCDC81 (ENSAMEG00000006169)	ENSAMEG00000024714	ME3 (ENSAMEG00000006202)	ENSAMEG00000023464	FZD4 (ENSAMEG00000025739)	TMEM135 (ENSAMEG00000006301)	RAB38 (ENSAMEG00000015103)	CTSC (ENSAMEG00000015113)	GRM5 (ENSAMEG00000024209)	TYR (ENSAMEG00000005958)	NOX4 (ENSAMEG00000005207)	ENSAMEG00000005259	ENSAMEG00000007477	ENSAMEG00000007577
Felidae	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a.q.b	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Panthera	ANCESTRAL SPECIES	23	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a.q.b	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Tiger	MODERN SPECIES	123	ENSPTIG00000009818	RAB30 (ENSPTIG00000009836)	PCF11 (ENSPTIG00000009975)	ANKRD42 (ENSPTIG00000010041)	CCDC90B (ENSPTIG00000010203)	ENSPTIG00000010312	ENSPTIG00000010529	TMEM126B (ENSPTIG00000011015)	ENSPTIG00000011055	ENSPTIG00000011085	CCDC89 (ENSPTIG00000009905)	ENSPTIG00000011280	CCDC83 (ENSPTIG00000012014)	ENSPTIG00000009913	PICALM (ENSPTIG00000012288)	EED (ENSPTIG00000012760) #22	HIKESHI (ENSPTIG00000012915)	CCDC81 (ENSPTIG00000013106)	ME3 (ENSPTIG00000013285)	PRSS23 (ENSPTIG00000009955)	FZD4 (ENSPTIG00000013786)	TMEM135 (ENSPTIG00000013833)	RAB38 (ENSPTIG00000014043)	CTSC (ENSPTIG00000014202)	GRM5 (ENSPTIG00000014395)	TYR (ENSPTIG00000014539)	NOX4 (ENSPTIG00000015391)	FOLH1 (ENSPTIG00000016704)	ENSPTIG00000017086	ENSPTIG00000017277	TRIM77 (ENSPTIG00000017304)
Panthera_a	ANCESTRAL SPECIES	24	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a.q.b	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
leopard	MODERN SPECIES	17	RAB30 (ENSPPRG00000023881)	PCF11 (ENSPPRG00000024270)	ANKRD42 (ENSPPRG00000024421)	CCDC90B (ENSPPRG00000013976)	ENSPPRG00000012171	ENSPPRG00000010067	TMEM126B (ENSPPRG00000005529)	ENSPPRG00000005013	ENSPPRG00000004597	CCDC89 (ENSPPRG00000016516)	ENSPPRG00000004036	CCDC83 (ENSPPRG00000018265)	ENSPPRG00000016079	PICALM (ENSPPRG00000015638)	ENSPPRG00000015994	EED (ENSPPRG00000012039) #22	HIKESHI (ENSPPRG00000010865)	CCDC81 (ENSPPRG00000009583)	ME3 (ENSPPRG00000008336)	PRSS23 (ENSPPRG00000015765)	FZD4 (ENSPPRG00000004892)	TMEM135 (ENSPPRG00000004298)	RAB38 (ENSPPRG00000002670)	CTSC (ENSPPRG00000002465)	GRM5 (ENSPPRG00000001606)	TYR (ENSPPRG00000001016)	NOX4 (ENSPPRG00000000522)	FOLH1 (ENSPPRG00000017997)	ENSPPRG00000013571	TRIM77 (ENSPPRG00000012936)	UBTFL1 (ENSPPRG00000015347)
lion	MODERN SPECIES	10	DDIAS (ENSPLOG00000020793)	RAB30 (ENSPLOG00000020748)	PCF11 (ENSPLOG00000020679)	ANKRD42 (ENSPLOG00000020576)	CCDC90B (ENSPLOG00000020533)	DLG2 (ENSPLOG00000019919)	ENSPLOG00000019612	ENSPLOG00000019583	TMEM126B (ENSPLOG00000019541)	ENSPLOG00000019486	CREBZF (ENSPLOG00000019442)	CCDC89 (ENSPLOG00000019413)	SYTL2 (ENSPLOG00000019183)	CCDC83 (ENSPLOG00000019073)	PICALM (ENSPLOG00000018802)	EED (ENSPLOG00000018287) #22	HIKESHI (ENSPLOG00000018145)	CCDC81 (ENSPLOG00000017860)	ENSPLOG00000017816	ME3 (ENSPLOG00000017730)	ENSPLOG00000017695	PRSS23 (ENSPLOG00000017679)	FZD4 (ENSPLOG00000017652)	TMEM135 (ENSPLOG00000017505)	RAB38 (ENSPLOG00000017440)	CTSC (ENSPLOG00000017389)	GRM5 (ENSPLOG00000017218)	TYR (ENSPLOG00000017151)	NOX4 (ENSPLOG00000016100)	FOLH1 (ENSPLOG00000015364)	ENSPLOG00000015181
Cat	MODERN SPECIES	241	ENSFCAG00000053601	PRCP (ENSFCAG00000028082)	DDIAS (ENSFCAG00000031353)	RAB30 (ENSFCAG00000014416)	PCF11 (ENSFCAG00000022938)	ANKRD42 (ENSFCAG00000029546)	CCDC90B (ENSFCAG00000023013)	DLG2 (ENSFCAG00000027392)	TMEM126B (ENSFCAG00000042698)	ENSFCAG00000027606	CREBZF (ENSFCAG00000042678)	CCDC89 (ENSFCAG00000000408)	SYTL2 (ENSFCAG00000029903)	CCDC83 (ENSFCAG00000030354)	PICALM (ENSFCAG00000029123)	EED (ENSFCAG00000001593) #22	HIKESHI (ENSFCAG00000031418)	CCDC81 (ENSFCAG00000024111)	ENSFCAG00000028997	ME3 (ENSFCAG00000011823)	FZD4 (ENSFCAG00000033140)	TMEM135 (ENSFCAG00000028774)	RAB38 (ENSFCAG00000008444)	CTSC (ENSFCAG00000008445)	GRM5 (ENSFCAG00000035511)	TYR (ENSFCAG00000024128)	NOX4 (ENSFCAG00000026770)	FOLH1 (ENSFCAG00000007740)	ENSFCAG00000008521	ENSFCAG00000043585	ENSFCAG00000018518
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Equus	ANCESTRAL SPECIES	15	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00860000135923	ENSGT00550000074698.k.b.b.jc	ENSGT00940000163242.b.a	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00900000143351	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00940000168933	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Donkey	MODERN SPECIES	12	RAB30 (ENSEASG00005035066)	PCF11 (ENSEASG00005012749)	CCDC90B (ENSEASG00005012746)	ANKRD42 (ENSEASG00005012744)	ENSEASG00005024778	ENSEASG00005024412	ENSEASG00005012741	DLG2 (ENSEASG00005012722)	TMEM126B (ENSEASG00005024050)	TMEM126A (ENSEASG00005023675)	CREBZF (ENSEASG00005030453)	CCDC89 (ENSEASG00005012696)	SYTL2 (ENSEASG00005012693)	CCDC83 (ENSEASG00005012690)	PICALM (ENSEASG00005012685)	EED (ENSEASG00005012683) #22	HIKESHI (ENSEASG00005012681)	CCDC81 (ENSEASG00005012679)	ENSEASG00005038186	ME3 (ENSEASG00005012671)	PRSS23 (ENSEASG00005035692)	FZD4 (ENSEASG00005012666)	ENSEASG00005012664	TMEM135 (ENSEASG00005012663)	RAB38 (ENSEASG00005025963)	CTSC (ENSEASG00005027690)	ENSEASG00005032755	ENSEASG00005012648	GRM5 (ENSEASG00005012645)	TYR (ENSEASG00005012641)	ENSEASG00005012636
Horse	MODERN SPECIES	28	PCF11 (ENSECAG00000018683)	CCDC90B (ENSECAG00000013853)	ANKRD42 (ENSECAG00000018421)	ENSECAG00000044671	ENSECAG00000052899	ENSECAG00000006065	ENSECAG00000011596	DLG2 (ENSECAG00000013426)	TMEM126B (ENSECAG00000010871)	TMEM126A (ENSECAG00000010580)	CREBZF (ENSECAG00000051993)	CCDC89 (ENSECAG00000005713)	SYTL2 (ENSECAG00000006803)	CCDC83 (ENSECAG00000023925)	PICALM (ENSECAG00000019264)	EED (ENSECAG00000016295) #22	ENSECAG00000059054	HIKESHI (ENSECAG00000049412)	CCDC81 (ENSECAG00000015265)	ENSECAG00000005619	ENSECAG00000027950	ME3 (ENSECAG00000007798)	PRSS23 (ENSECAG00000005563)	FZD4 (ENSECAG00000030065)	ENSECAG00000059232	ENSECAG00000051350	ENSECAG00000003430	ENSECAG00000044202	TMEM135 (ENSECAG00000007648)	RAB38 (ENSECAG00000001775)	CTSC (ENSECAG00000020881)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b.cb	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.A
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b.cb	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163858
Greater horseshoe bat	MODERN SPECIES	2	PRCP (ENSRFEG00010021203)	DDIAS (ENSRFEG00010021225)	RAB30 (ENSRFEG00010010335)	PCF11 (ENSRFEG00010010412)	ENSRFEG00010010518	ENSRFEG00010010648	DLG2 (ENSRFEG00010011148)	ENSRFEG00010012064	TMEM126B (ENSRFEG00010012127)	TMEM126A (ENSRFEG00010012220)	CREBZF (ENSRFEG00010012287)	CCDC89 (ENSRFEG00010012330)	SYTL2 (ENSRFEG00010012365)	ENSRFEG00010012812	PICALM (ENSRFEG00010012989)	EED (ENSRFEG00010013379) #22	ENSRFEG00010013602	HIKESHI (ENSRFEG00010013658)	ENSRFEG00010013854	CCDC81 (ENSRFEG00010013935)	ME3 (ENSRFEG00010014578)	ENSRFEG00010014821	PRSS23 (ENSRFEG00010014842)	FZD4 (ENSRFEG00010014860)	ENSRFEG00010014879	TMEM135 (ENSRFEG00010014945)	RAB38 (ENSRFEG00010015300)	CTSC (ENSRFEG00010015349)	GRM5 (ENSRFEG00010015430)	TYR (ENSRFEG00010015497)	NOX4 (ENSRFEG00010015643)
Microbat	MODERN SPECIES	1043								ENSMLUG00000008469	TMEM126B (ENSMLUG00000005891)	TMEM126A (ENSMLUG00000005896)	CCDC89 (ENSMLUG00000005906)	ENSMLUG00000005910	CCDC83 (ENSMLUG00000005923)	PICALM (ENSMLUG00000005936)	ENSMLUG00000026711	EED (ENSMLUG00000014688) #22	HIKESHI (ENSMLUG00000016260)	CCDC81 (ENSMLUG00000001952)	ME3 (ENSMLUG00000001964)	PRSS23 (ENSMLUG00000001979)	FZD4 (ENSMLUG00000009453)	ENSMLUG00000029442	ENSMLUG00000008814	RAB38 (ENSMLUG00000010537)	CTSC (ENSMLUG00000010550)	GRM5 (ENSMLUG00000016200)	ENSMLUG00000024818	TYR (ENSMLUG00000016206)	NOX4 (ENSMLUG00000016907)	ENSMLUG00000025886	FOLH1 (ENSMLUG00000008308)
Megabat	MODERN SPECIES	2698																EED (ENSPVAG00000007530) #22	HIKESHI (ENSPVAG00000007532)	CCDC81 (ENSPVAG00000007534)	ME3 (ENSPVAG00000007536)
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Suina	ANCESTRAL SPECIES	5	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A
Pig	MODERN SPECIES	17	DDIAS (ENSSSCG00000014898)	RAB30 (ENSSSCG00000014900)	PCF11 (ENSSSCG00000014901)	ANKRD42 (ENSSSCG00000014902)	CCDC90B (ENSSSCG00000014903)	DLG2 (ENSSSCG00000014904)	TMEM126B (ENSSSCG00000014905)	TMEM126A (ENSSSCG00000025187)	CREBZF (ENSSSCG00000014907)	CCDC89 (ENSSSCG00000062997)	SYTL2 (ENSSSCG00000014909)	ENSSSCG00000059638	ENSSSCG00000014911	CCDC83 (ENSSSCG00000014912)	PICALM (ENSSSCG00000014913)	EED (ENSSSCG00000014915) #22	HIKESHI (ENSSSCG00000021210)	CCDC81 (ENSSSCG00000014917)	ENSSSCG00000047749	ENSSSCG00000014918	ME3 (ENSSSCG00000014919)	PRSS23 (ENSSSCG00000014921)	FZD4 (ENSSSCG00000014920)	TMEM135 (ENSSSCG00000035619)	RAB38 (ENSSSCG00000033878)	CTSC (ENSSSCG00000014924)	GRM5 (ENSSSCG00000029865)	ENSSSCG00000052702	TYR (ENSSSCG00000026409)	NOX4 (ENSSSCG00000014927)	FOLH1B (ENSSSCG00000027093)
Chacoan peccary	MODERN SPECIES	31		DDIAS (ENSCWAG00000000327)	PRCP (ENSCWAG00000000285)	RAB30 (ENSCWAG00000000258)	PCF11 (ENSCWAG00000000220)	ANKRD42 (ENSCWAG00000000170)	CCDC90B (ENSCWAG00000015330)	DLG2 (ENSCWAG00000005957)	TMEM126B (ENSCWAG00000005630)	TMEM126A (ENSCWAG00000005609)	CREBZF (ENSCWAG00000005594)	CCDC89 (ENSCWAG00000005581)	SYTL2 (ENSCWAG00000005345)	CCDC83 (ENSCWAG00000005253)	PICALM (ENSCWAG00000005113)	EED (ENSCWAG00000004971) #22	HIKESHI (ENSCWAG00000004933)	CCDC81 (ENSCWAG00000004701)	ENSCWAG00000004652	ME3 (ENSCWAG00000004613)	ENSCWAG00000004584	PRSS23 (ENSCWAG00000004567)	FZD4 (ENSCWAG00000004556)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Camelidae	ANCESTRAL SPECIES	32	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.B	ENSGT00940000163858
Arabian camel	MODERN SPECIES	1	DDIAS (ENSCDRG00005000219)	RAB30 (ENSCDRG00005000271)	PCF11 (ENSCDRG00005000302)	ANKRD42 (ENSCDRG00005000336)	CCDC90B (ENSCDRG00005000363)	ENSCDRG00005000387	DLG2 (ENSCDRG00005000832)	TMEM126B (ENSCDRG00005005932)	ENSCDRG00005005974	CREBZF (ENSCDRG00005006000)	ENSCDRG00005006034	CCDC89 (ENSCDRG00005006041)	SYTL2 (ENSCDRG00005006073)	CCDC83 (ENSCDRG00005006299)	PICALM (ENSCDRG00005006440)	EED (ENSCDRG00005007103) #22	HIKESHI (ENSCDRG00005007926)	CCDC81 (ENSCDRG00005008087)	ENSCDRG00005008636	ME3 (ENSCDRG00005008675)	PRSS23 (ENSCDRG00005008761)	FZD4 (ENSCDRG00005008783)	TMEM135 (ENSCDRG00005008846)	RAB38 (ENSCDRG00005009241)	CTSC (ENSCDRG00005009321)	GRM5 (ENSCDRG00005009561)	TYR (ENSCDRG00005009674)	NOX4 (ENSCDRG00005009765)	FOLH1 (ENSCDRG00005010235)	ENSCDRG00005010410	ENSCDRG00005010499
Alpaca	MODERN SPECIES	1954											TMEM126B (ENSVPAG00000001715)	TMEM126A (ENSVPAG00000001716)	SYTL2 (ENSVPAG00000001719)	CCDC83 (ENSVPAG00000001720)	PICALM (ENSVPAG00000001721)	EED (ENSVPAG00000001723) #22	HIKESHI (ENSVPAG00000001725)	CCDC81 (ENSVPAG00000001728)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Pecora	ANCESTRAL SPECIES	13	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Yarkand deer	MODERN SPECIES	11	DDIAS (ENSCHYG00000003391)	RAB30 (ENSCHYG00000003380)	PCF11 (ENSCHYG00000003359)	ANKRD42 (ENSCHYG00000003347)	ENSCHYG00000003340	ENSCHYG00000003307	ENSCHYG00000002869	TMEM126B (ENSCHYG00000002757)	ENSCHYG00000002743	CREBZF (ENSCHYG00000002736)	CCDC89 (ENSCHYG00000002726)	ENSCHYG00000002641	ENSCHYG00000002613	ENSCHYG00000002584	PICALM (ENSCHYG00000001855)	EED (ENSCHYG00000001672) #22	HIKESHI (ENSCHYG00000001630)	CCDC81 (ENSCHYG00000001578)	ENSCHYG00000001557	ENSCHYG00000001541	ENSCHYG00000001536	ME3 (ENSCHYG00000001420)	PRSS23 (ENSCHYG00000001379)	FZD4 (ENSCHYG00000001366)	TMEM135 (ENSCHYG00000001269)	RAB38 (ENSCHYG00000001226)	CTSC (ENSCHYG00000001169)	ENSCHYG00000001133	GRM5 (ENSCHYG00000000979)	TYR (ENSCHYG00000000943)	NOX4 (ENSCHYG00000000830)
Percora_a	ANCESTRAL SPECIES	16	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Bovidae	ANCESTRAL SPECIES	16	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00960000192014	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Bovinae	ANCESTRAL SPECIES	27	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00960000192014	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Bos	ANCESTRAL SPECIES	11	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Cow	MODERN SPECIES	21	DDIAS (ENSBTAG00000011636)	RAB30 (ENSBTAG00000002417)	PCF11 (ENSBTAG00000015277)	ANKRD42 (ENSBTAG00000001391)	CCDC90B (ENSBTAG00000007479)	ENSBTAG00000048705	DLG2 (ENSBTAG00000027868)	ENSBTAG00000053418	TMEM126B (ENSBTAG00000020596)	TMEM126A (ENSBTAG00000000451)	CREBZF (ENSBTAG00000000455)	CCDC89 (ENSBTAG00000000457)	SYTL2 (ENSBTAG00000000460)	CCDC83 (ENSBTAG00000011132)	PICALM (ENSBTAG00000001657)	EED (ENSBTAG00000007847) #22	HIKESHI (ENSBTAG00000019995)	CCDC81 (ENSBTAG00000020009)	ENSBTAG00000046374	ME3 (ENSBTAG00000000246)	PRSS23 (ENSBTAG00000015177)	FZD4 (ENSBTAG00000040128)	TMEM135 (ENSBTAG00000005482)	ENSBTAG00000050697	ENSBTAG00000049723	RAB38 (ENSBTAG00000015793)	CTSC (ENSBTAG00000011100)	ENSBTAG00000034845	GRM5 (ENSBTAG00000048061)	TYR (ENSBTAG00000011813)	NOX4 (ENSBTAG00000018540)
Hybrid Bos Indicus	MODERN SPECIES	21	PCF11 (ENSBIXG00005003173)	ANKRD42 (ENSBIXG00005019460)	CCDC90B (ENSBIXG00005003146)	DLG2 (ENSBIXG00005000048)	ENSBIXG00005016035	ENSBIXG00005016027	ENSBIXG00005007506	ENSBIXG00005015966	TMEM126B (ENSBIXG00005006137)	TMEM126A (ENSBIXG00005015931)	CREBZF (ENSBIXG00005015909)	CCDC89 (ENSBIXG00005002504)	ENSBIXG00005015861	CCDC83 (ENSBIXG00005015679)	PICALM (ENSBIXG00005015588)	EED (ENSBIXG00005015358) #22	HIKESHI (ENSBIXG00005015272)	CCDC81 (ENSBIXG00005015221)	ENSBIXG00005015176	ME3 (ENSBIXG00005015127)	ENSBIXG00005006228	PRSS23 (ENSBIXG00005015048)	FZD4 (ENSBIXG00005002201)	TMEM135 (ENSBIXG00005007500)	ENSBIXG00005014836	ENSBIXG00005006132	ENSBIXG00005014818	RAB38 (ENSBIXG00005014802)	CTSC (ENSBIXG00005005707)	ENSBIXG00005014734	ENSBIXG00005002053
Bos_a	ANCESTRAL SPECIES	66	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Domestic yak	MODERN SPECIES	21	CCDC90B (ENSBGRG00000022070)	DLG2 (ENSBGRG00000022447)	ENSBGRG00000023913	ENSBGRG00000023931	ENSBGRG00000023962	ENSBGRG00000023993	ENSBGRG00000024005	ENSBGRG00000024013	TMEM126B (ENSBGRG00000024037)	ENSBGRG00000024097	CREBZF (ENSBGRG00000024210)	CCDC89 (ENSBGRG00000024223)	ENSBGRG00000024253	CCDC83 (ENSBGRG00000024540)	PICALM (ENSBGRG00000024679)	EED (ENSBGRG00000025126) #22	HIKESHI (ENSBGRG00000025330)	CCDC81 (ENSBGRG00000025357)	ME3 (ENSBGRG00000025466)	ENSBGRG00000025555	ENSBGRG00000025562	PRSS23 (ENSBGRG00000025570)	FZD4 (ENSBGRG00000025585)	TMEM135 (ENSBGRG00000025613)	RAB38 (ENSBGRG00000025707)	CTSC (ENSBGRG00000025732)	GRM5 (ENSBGRG00000025754)	ENSBGRG00000025770	ENSBGRG00000025774	ENSBGRG00000013459	NOX4 (ENSBGRG00000013584)
Wild yak	MODERN SPECIES	1529														CCDC83 (ENSBMUG00000019367)	PICALM (ENSBMUG00000019285)	EED (ENSBMUG00000019111) #22	HIKESHI (ENSBMUG00000019057)	CCDC81 (ENSBMUG00000019021)	ENSBMUG00000018940	ME3 (ENSBMUG00000018926)	FZD4 (ENSBMUG00000018882)
American bison	MODERN SPECIES	3238	DDIAS (ENSBBBG00000007233)	RAB30 (ENSBBBG00000019557)	PCF11 (ENSBBBG00000007044)	ANKRD42 (ENSBBBG00000019636)	CCDC90B (ENSBBBG00000019665)	DLG2 (ENSBBBG00000007047)	ENSBBBG00000008368	ENSBBBG00000008951	ENSBBBG00000020046	TMEM126A (ENSBBBG00000005096)	CREBZF (ENSBBBG00000005090)	CCDC89 (ENSBBBG00000005086)	ENSBBBG00000020192	CCDC83 (ENSBBBG00000005453)	PICALM (ENSBBBG00000006910)	EED (ENSBBBG00000000678) #22	HIKESHI (ENSBBBG00000000640)	CCDC81 (ENSBBBG00000000571)	ENSBBBG00000000561	ME3 (ENSBBBG00000000531)	PRSS23 (ENSBBBG00000000524)	FZD4 (ENSBBBG00000005521)
Caprinae	ANCESTRAL SPECIES	29	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00900000143390	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00900000143351	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00960000192014	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Goat	MODERN SPECIES	21	RAB30 (ENSCHIG00000020601)	PCF11 (ENSCHIG00000020954)	ANKRD42 (ENSCHIG00000018399)	CCDC90B (ENSCHIG00000023161)	DLG2 (ENSCHIG00000024691)	ENSCHIG00000009761	ENSCHIG00000021811	TMEM126B (ENSCHIG00000013101)	ENSCHIG00000026099	CREBZF (ENSCHIG00000005919)	CCDC89 (ENSCHIG00000004366)	ENSCHIG00000019092	CCDC83 (ENSCHIG00000013675)	ENSCHIG00000022640	PICALM (ENSCHIG00000015634)	EED (ENSCHIG00000015509) #22	HIKESHI (ENSCHIG00000023660)	CCDC81 (ENSCHIG00000016243)	ENSCHIG00000002265	ME3 (ENSCHIG00000014285)	PRSS23 (ENSCHIG00000010056)	FZD4 (ENSCHIG00000026211)	ENSCHIG00000019838	ENSCHIG00000013504	RAB38 (ENSCHIG00000024276)	CTSC (ENSCHIG00000013901)	GRM5 (ENSCHIG00000015813)	ENSCHIG00000023687	TYR (ENSCHIG00000004892)	NOX4 (ENSCHIG00000021611)	FOLH1 (ENSCHIG00000013522)
Rambouillet Sheep	MODERN SPECIES	13	PCF11 (ENSOARG00020024415)	CCDC90B (ENSOARG00020024361)	ENSOARG00020024238	ENSOARG00020024223	ENSOARG00020024191	ENSOARG00020024175	DLG2 (ENSOARG00020016002)	TMEM126B (ENSOARG00020015676)	TMEM126A (ENSOARG00020015625)	CREBZF (ENSOARG00020015588)	CCDC89 (ENSOARG00020015557)	SYTL2 (ENSOARG00020014519)	ENSOARG00020014438	ENSOARG00020014330	PICALM (ENSOARG00020013638)	EED (ENSOARG00020012861) #22	HIKESHI (ENSOARG00020012706)	ENSOARG00020018700	ME3 (ENSOARG00020018621)	ENSOARG00020018554	PRSS23 (ENSOARG00020018547)	FZD4 (ENSOARG00020018518)	TMEM135 (ENSOARG00020018240)	ENSOARG00020018155	RAB38 (ENSOARG00020018125)	CTSC (ENSOARG00020017978)	ENSOARG00020017848	ENSOARG00020017819	TYR (ENSOARG00020017770)	NOX4 (ENSOARG00020017262)	ENSOARG00020017199
Siberian musk deer	MODERN SPECIES	334								DLG2 (ENSMMSG00000012131)	TMEM126B (ENSMMSG00000011791)	TMEM126A (ENSMMSG00000011765)	CREBZF (ENSMMSG00000011747)	CCDC89 (ENSMMSG00000011737)	ENSMMSG00000011390	CCDC83 (ENSMMSG00000011291)	PICALM (ENSMMSG00000010915)	EED (ENSMMSG00000010761) #22	HIKESHI (ENSMMSG00000010677)	CCDC81 (ENSMMSG00000010200)	ENSMMSG00000010151	ENSMMSG00000010131	ME3 (ENSMMSG00000010096)	PRSS23 (ENSMMSG00000010081)	FZD4 (ENSMMSG00000010064)	TMEM135 (ENSMMSG00000009825)	RAB38 (ENSMMSG00000009772)	CTSC (ENSMMSG00000009733)	GRM5 (ENSMMSG00000009613)	TYR (ENSMMSG00000009581)	NOX4 (ENSMMSG00000009089)	FOLH1 (ENSMMSG00000008725)	ENSMMSG00000008663
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440.g
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000010283.k.b	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.k.a	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a.m.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000010283.k.b	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.k.a	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a.m.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000010283.k.b	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00980000198692	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.k.a	ENSGT00940000155156.b	ENSGT00520000055616.b	ENSGT00520000055616.a.m.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00940000164723	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b
Narwhal	MODERN SPECIES	314	ENSMMNG00015017500	PRCP (ENSMMNG00015017470)	DDIAS (ENSMMNG00015017356)	RAB30 (ENSMMNG00015017300)	PCF11 (ENSMMNG00015017250)	ANKRD42 (ENSMMNG00015017078)	CCDC90B (ENSMMNG00015017033)	DLG2 (ENSMMNG00015015492)	TMEM126B (ENSMMNG00015015104)	ENSMMNG00015015089	CREBZF (ENSMMNG00015015075)	CCDC89 (ENSMMNG00015015061)	ENSMMNG00015015000	CCDC83 (ENSMMNG00015014970)	PICALM (ENSMMNG00015014880)	EED (ENSMMNG00015014804) #22	HIKESHI (ENSMMNG00015014769)	CCDC81 (ENSMMNG00015014732)	ENSMMNG00015014700	ME3 (ENSMMNG00015014679)	PRSS23 (ENSMMNG00015014667)	FZD4 (ENSMMNG00015014656)	TMEM135 (ENSMMNG00015014607)	RAB38 (ENSMMNG00015014573)	CTSC (ENSMMNG00015014542)	GRM5 (ENSMMNG00015014498)	TYR (ENSMMNG00015014453)	NOX4 (ENSMMNG00015021151)	NAALAD2 (ENSMMNG00015020956)	CHORDC1 (ENSMMNG00015020880)	FAT3 (ENSMMNG00015020732)
Beluga whale	MODERN SPECIES	2	DDIAS (ENSDLEG00000004578)	RAB30 (ENSDLEG00000002770)	PCF11 (ENSDLEG00000002774)	ANKRD42 (ENSDLEG00000002791)	ENSDLEG00000002798	ENSDLEG00000002802	DLG2 (ENSDLEG00000002821)	ENSDLEG00000002911	TMEM126B (ENSDLEG00000002918)	ENSDLEG00000002926	CREBZF (ENSDLEG00000002931)	CCDC89 (ENSDLEG00000002938)	ENSDLEG00000002956	CCDC83 (ENSDLEG00000002970)	PICALM (ENSDLEG00000002993)	EED (ENSDLEG00000003117) #22	HIKESHI (ENSDLEG00000003141)	CCDC81 (ENSDLEG00000003163)	ME3 (ENSDLEG00000003198)	PRSS23 (ENSDLEG00000003208)	FZD4 (ENSDLEG00000003217)	ENSDLEG00000003221	TMEM135 (ENSDLEG00000003226)	RAB38 (ENSDLEG00000003249)	CTSC (ENSDLEG00000003257)	GRM5 (ENSDLEG00000003265)	TYR (ENSDLEG00000003283)	NOX4 (ENSDLEG00000003303)	FOLH1 (ENSDLEG00000003393)	ENSDLEG00000003772
Vaquita	MODERN SPECIES	19	ENSPSNG00000003929	PRCP (ENSPSNG00000021508)	DDIAS (ENSPSNG00000021476)	RAB30 (ENSPSNG00000021453)	PCF11 (ENSPSNG00000021405)	ANKRD42 (ENSPSNG00000021372)	ENSPSNG00000021348	DLG2 (ENSPSNG00000019221)	TMEM126B (ENSPSNG00000018567)	ENSPSNG00000018507	CREBZF (ENSPSNG00000018478)	CCDC89 (ENSPSNG00000018454)	ENSPSNG00000018339	CCDC83 (ENSPSNG00000018191)	PICALM (ENSPSNG00000017970)	EED (ENSPSNG00000017804) #22	HIKESHI (ENSPSNG00000017703)	CCDC81 (ENSPSNG00000017515)	ENSPSNG00000017457	ME3 (ENSPSNG00000017348)	PRSS23 (ENSPSNG00000017307)	FZD4 (ENSPSNG00000017272)	ENSPSNG00000017225	TMEM135 (ENSPSNG00000017021)	RAB38 (ENSPSNG00000016956)	CTSC (ENSPSNG00000016884)	GRM5 (ENSPSNG00000016691)	TYR (ENSPSNG00000016603)	NOX4 (ENSPSNG00000016374)	ENSPSNG00000016293	ENSPSNG00000015989
Dolphin	MODERN SPECIES	1901																EED (ENSTTRG00000012266) #22	HIKESHI (ENSTTRG00000012267)	CCDC81 (ENSTTRG00000012268)	ME3 (ENSTTRG00000012269)	PRSS23 (ENSTTRG00000012270)
Sperm whale	MODERN SPECIES	7	PRCP (ENSPCTG00005010561)	DDIAS (ENSPCTG00005010514)	RAB30 (ENSPCTG00005010467)	PCF11 (ENSPCTG00005010384)	ANKRD42 (ENSPCTG00005010304)	CCDC90B (ENSPCTG00005010220)	DLG2 (ENSPCTG00005008716)	ENSPCTG00005008523	ENSPCTG00005008505	TMEM126B (ENSPCTG00005008472)	TMEM126A (ENSPCTG00005008442)	CCDC89 (ENSPCTG00005008392)	SYTL2 (ENSPCTG00005008215)	CCDC83 (ENSPCTG00005008113)	PICALM (ENSPCTG00005007605)	EED (ENSPCTG00005007433) #22	HIKESHI (ENSPCTG00005007380)	CCDC81 (ENSPCTG00005007322)	ENSPCTG00005007298	ME3 (ENSPCTG00005007233)	PRSS23 (ENSPCTG00005007213)	FZD4 (ENSPCTG00005007199)	ENSPCTG00005007172	TMEM135 (ENSPCTG00005007056)	ENSPCTG00005007024	ENSPCTG00005007012	RAB38 (ENSPCTG00005007000)	CTSC (ENSPCTG00005006945)	GRM5 (ENSPCTG00005006847)	TYR (ENSPCTG00005006804)	NOX4 (ENSPCTG00005006689)
Blue whale	MODERN SPECIES	19	PRCP (ENSBMSG00010005061)	DDIAS (ENSBMSG00010005051)	RAB30 (ENSBMSG00010005043)	PCF11 (ENSBMSG00010005034)	ANKRD42 (ENSBMSG00010005024)	CCDC90B (ENSBMSG00010005013)	ENSBMSG00010005009	DLG2 (ENSBMSG00010002552)	TMEM126B (ENSBMSG00010001999)	TMEM126A (ENSBMSG00010001985)	CREBZF (ENSBMSG00010001973)	CCDC89 (ENSBMSG00010001966)	SYTL2 (ENSBMSG00010001898)	CCDC83 (ENSBMSG00010001838)	PICALM (ENSBMSG00010001786)	EED (ENSBMSG00010001736) #22	HIKESHI (ENSBMSG00010001721)	CCDC81 (ENSBMSG00010001642)	ME3 (ENSBMSG00010001610)	PRSS23 (ENSBMSG00010001597)	FZD4 (ENSBMSG00010001591)	ENSBMSG00010001482	RAB38 (ENSBMSG00010001436)	CTSC (ENSBMSG00010001420)	GRM5 (ENSBMSG00010001371)	TYR (ENSBMSG00010001331)	NOX4 (ENSBMSG00010000676)	FOLH1 (ENSBMSG00010000460)	ENSBMSG00010000378	ENSBMSG00010000367	ENSBMSG00010000341
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00510000047334 #22
Common shrew	MODERN SPECIES	9467																EED (ENSSARG00000002301) #22
Hedgehog	MODERN SPECIES	7334																EED (ENSEEUG00000005681) #22
Atlantogenata	ANCESTRAL SPECIES	35	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858
Afrotheria	ANCESTRAL SPECIES	41	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858
Afrotheria_a	ANCESTRAL SPECIES	120	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Hyrax	MODERN SPECIES	6419																EED (ENSPCAG00000001369) #22
Elephant	MODERN SPECIES	486	ENSLAFG00000026823	PRCP (ENSLAFG00000008730)	DDIAS (ENSLAFG00000008583)	RAB30 (ENSLAFG00000010711)	PCF11 (ENSLAFG00000000623)	ANKRD42 (ENSLAFG00000021802)	ENSLAFG00000015417	ENSLAFG00000010836	ENSLAFG00000030347	TMEM126A (ENSLAFG00000022847)	CREBZF (ENSLAFG00000014649)	CCDC89 (ENSLAFG00000017161)	ENSLAFG00000023353	ENSLAFG00000000753	PICALM (ENSLAFG00000000754)	EED (ENSLAFG00000002676) #22	HIKESHI (ENSLAFG00000009125)	CCDC81 (ENSLAFG00000002978)	ME3 (ENSLAFG00000006856)	PRSS23 (ENSLAFG00000004876)	ENSLAFG00000031157	FZD4 (ENSLAFG00000007383)	TMEM135 (ENSLAFG00000000851)	RAB38 (ENSLAFG00000032135)	CTSC (ENSLAFG00000000890)	ENSLAFG00000032092	ENSLAFG00000004534	TYR (ENSLAFG00000016209)	NOX4 (ENSLAFG00000016618)	FOLH1 (ENSLAFG00000010953)	ENSLAFG00000023298
Tenrec	MODERN SPECIES	6756																ENSETEG00000017442 #22	ENSETEG00000017446
Xenarthra	ANCESTRAL SPECIES																	ENSGT00510000047334 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1234																ENSDNOG00000001629 #22	ENSDNOG00000047705	HIKESHI (ENSDNOG00000036375)	CCDC81 (ENSDNOG00000044311)	ME3 (ENSDNOG00000008517)
Armadillo	MODERN SPECIES	2561												ENSDNOG00000044511	ENSDNOG00000049807	ENSDNOG00000031270	ENSDNOG00000036289	ENSDNOG00000045041 #22	ENSDNOG00000044466	ENSDNOG00000047428	ENSDNOG00000034996	AVPR1B (ENSDNOG00000009751)	RHEX (ENSDNOG00000046040)	ENSDNOG00000038861	CTSE (ENSDNOG00000009736)	RAB7B (ENSDNOG00000042775)	SLC26A9 (ENSDNOG00000005389)	PM20D1 (ENSDNOG00000005374)	SLC41A1 (ENSDNOG00000017984)	ENSDNOG00000034128	ENSDNOG00000017212	SLC45A3 (ENSDNOG00000016220)
Sloth	MODERN SPECIES	6838																EED (ENSCHOG00000000740) #22
Marsupialia	ANCESTRAL SPECIES	28	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Opossum	MODERN SPECIES	3	ENSMODG00000004513	RAB30 (ENSMODG00000042391)	PCF11 (ENSMODG00000004498)	ANKRD42 (ENSMODG00000004477)	CCDC90B (ENSMODG00000004456)	ENSMODG00000004436	ENSMODG00000006441	ENSMODG00000045316	ENSMODG00000037216	TMEM126A (ENSMODG00000004384)	CREBZF (ENSMODG00000004377)	ENSMODG00000004359	ENSMODG00000048166	CCDC83 (ENSMODG00000004311)	PICALM (ENSMODG00000004297)	EED (ENSMODG00000004253) #22	HIKESHI (ENSMODG00000039483)	CCDC81 (ENSMODG00000004183)	ME3 (ENSMODG00000004158)	PRSS23 (ENSMODG00000041673)	FZD4 (ENSMODG00000004102)	ENSMODG00000024072	TMEM135 (ENSMODG00000004087)	ENSMODG00000035809	ENSMODG00000024094	ENSMODG00000028786	LCP1 (ENSMODG00000011413)	ENSMODG00000011358	ENSMODG00000029107	LRCH1 (ENSMODG00000011348)	ESD (ENSMODG00000011290)
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.ab	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288
Diprotodontia	ANCESTRAL SPECIES	24	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.ab	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288
Diprotodontia_a	ANCESTRAL SPECIES	25	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453.ab	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT00520000055616.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288
koala	MODERN SPECIES	53	ENSPCIG00000036385	RAB30 (ENSPCIG00000027547)	PCF11 (ENSPCIG00000027546)	ANKRD42 (ENSPCIG00000027545)	CCDC90B (ENSPCIG00000027544)	ENSPCIG00000032781	ENSPCIG00000028928	ENSPCIG00000028927	ENSPCIG00000018835	ENSPCIG00000018836	CREBZF (ENSPCIG00000018837)	CCDC89 (ENSPCIG00000018839)	ENSPCIG00000018840	CCDC83 (ENSPCIG00000018849)	PICALM (ENSPCIG00000018862)	EED (ENSPCIG00000018888) #22	HIKESHI (ENSPCIG00000018890)	CCDC81 (ENSPCIG00000018892)	ENSPCIG00000018899	ENSPCIG00000036562	ENSPCIG00000018908	PRSS23 (ENSPCIG00000018910)	FZD4 (ENSPCIG00000018913)	TMEM135 (ENSPCIG00000027278)	RAB38 (ENSPCIG00000002044)	CTSC (ENSPCIG00000024375)	GRM5 (ENSPCIG00000024373)	ENSPCIG00000024370	TYR (ENSPCIG00000024368)	NOX4 (ENSPCIG00000011154)	FOLH1 (ENSPCIG00000018760)
Common wonbat	MODERN SPECIES	342	PRCP (ENSVURG00010006667)	ENSVURG00010006659	RAB30 (ENSVURG00010006644)	PCF11 (ENSVURG00010006617)	ANKRD42 (ENSVURG00010006605)	ENSVURG00010006592	ENSVURG00010006557	ENSVURG00010006518	ENSVURG00010006473	ENSVURG00010006456	TMEM126A (ENSVURG00010006451)	CREBZF (ENSVURG00010006446)	CCDC89 (ENSVURG00010006440)	ENSVURG00010006353	PICALM (ENSVURG00010006226)	EED (ENSVURG00010006129) #22	ENSVURG00010006114	ENSVURG00010006106	CCDC81 (ENSVURG00010006061)	ME3 (ENSVURG00010006020)	PRSS23 (ENSVURG00010005981)	FZD4 (ENSVURG00010005964)	TMEM135 (ENSVURG00010005930)	ENSVURG00010005908	CTSC (ENSVURG00010005899)	TYR (ENSVURG00010005865)	NOX4 (ENSVURG00010005832)	ENSVURG00010000640	LCP1 (ENSVURG00010023528)	ENSVURG00010023527	RUBCNL (ENSVURG00010023522)
Tasmanian devil	MODERN SPECIES	2	PCF11 (ENSSHAG00000017830)	ANKRD42 (ENSSHAG00000017684)	CCDC90B (ENSSHAG00000001413)	ENSSHAG00000032256	DLG2 (ENSSHAG00000025318)	ENSSHAG00000028016	ENSSHAG00000025462	ENSSHAG00000029253	ENSSHAG00000025603	TMEM126A (ENSSHAG00000027315)	CREBZF (ENSSHAG00000026899)	CCDC89 (ENSSHAG00000004068)	ENSSHAG00000000874	CCDC83 (ENSSHAG00000006672)	PICALM (ENSSHAG00000004629)	EED (ENSSHAG00000013554) #22	ENSSHAG00000013345	CCDC81 (ENSSHAG00000012907)	ME3 (ENSSHAG00000011265)	PRSS23 (ENSSHAG00000010219)	FZD4 (ENSSHAG00000009486)	TMEM135 (ENSSHAG00000005028)	RAB38 (ENSSHAG00000001883)	CTSC (ENSSHAG00000021775)	GRM5 (ENSSHAG00000005876)	TYR (ENSSHAG00000003407)	ENSSHAG00000004938	ENSSHAG00000002531	ENSSHAG00000002301	ENSSHAG00000031322	ENSSHAG00000013328
Platypus	MODERN SPECIES	12	NARS2 (ENSOANG00000001381)	TENM4 (ENSOANG00000050564)	ENSOANG00000036733	PRCP (ENSOANG00000011106)	RAB30 (ENSOANG00000014498)	PCF11 (ENSOANG00000006552)	ANKRD42 (ENSOANG00000008014)	CCDC90B (ENSOANG00000045474)	DLG2 (ENSOANG00000038643)	ENSOANG00000013210	ENSOANG00000013209	CCDC89 (ENSOANG00000013208)	ENSOANG00000013207	ENSOANG00000013206	PICALM (ENSOANG00000013205)	EED (ENSOANG00000008884) #22	HIKESHI (ENSOANG00000038507)	CCDC81 (ENSOANG00000008880)	ME3 (ENSOANG00000008877)	PRSS23 (ENSOANG00000008876)	FZD4 (ENSOANG00000008874)	TMEM135 (ENSOANG00000008873)	RAB38 (ENSOANG00000008872)	CTSC (ENSOANG00000043869)	GRM5 (ENSOANG00000008870)	TYR (ENSOANG00000008868)	NOX4 (ENSOANG00000008867)	FOLH1 (ENSOANG00000004606)	NAALAD2 (ENSOANG00000004605)	CHORDC1 (ENSOANG00000043552)	FAT3 (ENSOANG00000011705)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Common wall lizard	MODERN SPECIES	12	FAM181B (ENSPMRG00000001882)	PRCP (ENSPMRG00000001884)	ENSPMRG00000001893	RAB30 (ENSPMRG00000001899)	PCF11 (ENSPMRG00000001908)	ANKRD42 (ENSPMRG00000001939)	CCDC90B (ENSPMRG00000001968)	ENSPMRG00000002057	ENSPMRG00000002191	ENSPMRG00000002194	TMEM126A (ENSPMRG00000002199)	CCDC89 (ENSPMRG00000002202)	ENSPMRG00000002209	CCDC83 (ENSPMRG00000002226)	PICALM (ENSPMRG00000002250)	EED (ENSPMRG00000002299) #22	HIKESHI (ENSPMRG00000002304)	CCDC81 (ENSPMRG00000002312)	ME3 (ENSPMRG00000002329)	PRSS23 (ENSPMRG00000002350)	FZD4 (ENSPMRG00000002357)	TMEM135 (ENSPMRG00000002367)	RAB38 (ENSPMRG00000002382)	CTSC (ENSPMRG00000002387)	GRM5 (ENSPMRG00000002393)	TYR (ENSPMRG00000002408)	NOX4 (ENSPMRG00000002424)	FOLH1 (ENSPMRG00000002456)	CHORDC1 (ENSPMRG00000002476)	ENSPMRG00000002487	ENSPMRG00000002494
Argentine black and white tegu	MODERN SPECIES	24	PRCP (ENSSMRG00000007578)	ENSSMRG00000007581	RAB30 (ENSSMRG00000007583)	PCF11 (ENSSMRG00000007588)	ANKRD42 (ENSSMRG00000007597)	CCDC90B (ENSSMRG00000007607)	ENSSMRG00000007618	ENSSMRG00000007646	ENSSMRG00000009413	TMEM126A (ENSSMRG00000009417)	CREBZF (ENSSMRG00000009418)	CCDC89 (ENSSMRG00000009419)	ENSSMRG00000009420	CCDC83 (ENSSMRG00000009455)	PICALM (ENSSMRG00000009456)	EED (ENSSMRG00000009469) #22	HIKESHI (ENSSMRG00000009470)	CCDC81 (ENSSMRG00000009482)	ME3 (ENSSMRG00000009483)	ENSSMRG00000009486	PRSS23 (ENSSMRG00000009512)	FZD4 (ENSSMRG00000009513)	TMEM135 (ENSSMRG00000009520)	ENSSMRG00000009534	RAB38 (ENSSMRG00000009551)	CTSC (ENSSMRG00000009552)	GRM5 (ENSSMRG00000009569)	TYR (ENSSMRG00000009675)	NOX4 (ENSSMRG00000009686)	FOLH1 (ENSSMRG00000009691)	NAALAD2 (ENSSMRG00000009705)
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787.m	ENSGT00940000155787.n	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	4	FAM181B (ENSNNAG00000008960)	PRCP (ENSNNAG00000007309)	RAB30 (ENSNNAG00000007200)	PCF11 (ENSNNAG00000007053)	ANKRD42 (ENSNNAG00000006940)	CCDC90B (ENSNNAG00000006911)	ENSNNAG00000006872	ENSNNAG00000006844	ENSNNAG00000006824	ENSNNAG00000006814	TMEM126A (ENSNNAG00000006796)	CCDC89 (ENSNNAG00000006775)	ENSNNAG00000006760	PICALM (ENSNNAG00000006381)	ENSNNAG00000006310 #22	ENSNNAG00000006304 #22	HIKESHI (ENSNNAG00000006290)	CCDC81 (ENSNNAG00000006203)	ENSNNAG00000006162	ENSNNAG00000006142	PRSS23 (ENSNNAG00000006135)	FZD4 (ENSNNAG00000006121)	ENSNNAG00000006106	ENSNNAG00000006047	ENSNNAG00000006022	ENSNNAG00000006003	ENSNNAG00000005993	ENSNNAG00000005985	GRM5 (ENSNNAG00000005247)	TYR (ENSNNAG00000005074)	NOX4 (ENSNNAG00000005040)
Indian cobra	MODERN SPECIES	4	ENSNNAG00000008981	FAM181B (ENSNNAG00000008960)	PRCP (ENSNNAG00000007309)	RAB30 (ENSNNAG00000007200)	PCF11 (ENSNNAG00000007053)	ANKRD42 (ENSNNAG00000006940)	CCDC90B (ENSNNAG00000006911)	ENSNNAG00000006872	ENSNNAG00000006844	ENSNNAG00000006824	ENSNNAG00000006814	TMEM126A (ENSNNAG00000006796)	CCDC89 (ENSNNAG00000006775)	ENSNNAG00000006760	PICALM (ENSNNAG00000006381)	ENSNNAG00000006310 #22	ENSNNAG00000006304 #22	HIKESHI (ENSNNAG00000006290)	CCDC81 (ENSNNAG00000006203)	ENSNNAG00000006162	ENSNNAG00000006142	PRSS23 (ENSNNAG00000006135)	FZD4 (ENSNNAG00000006121)	ENSNNAG00000006106	ENSNNAG00000006047	ENSNNAG00000006022	ENSNNAG00000006003	ENSNNAG00000005993	ENSNNAG00000005985	GRM5 (ENSNNAG00000005247)	TYR (ENSNNAG00000005074)
Elapidae_a	ANCESTRAL SPECIES	41	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a.k	ENSGT00940000155453	ENSGT00940000155156.b.vb	ENSGT01000000214875	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a.b	ENSGT00950000183134.c.a.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787.m	ENSGT00940000155787.n	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i
Acanthophiinae	ANCESTRAL SPECIES	42	ENSGT00980000198692	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a.k	ENSGT00940000155453	ENSGT00940000155156.b.vb	ENSGT01000000214875	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a.b	ENSGT00950000183134.c.a.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787.m	ENSGT00940000155787.n	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i
Mainland tiger snake	MODERN SPECIES	135		ENSNSUG00000018618	FAM181B (ENSNSUG00000018617)	RAB30 (ENSNSUG00000018615)	PCF11 (ENSNSUG00000018614)	ENSNSUG00000018613	ENSNSUG00000018612	CCDC90B (ENSNSUG00000018611)	DLG2 (ENSNSUG00000018608)	ENSNSUG00000018605	TMEM126A (ENSNSUG00000018604)	CREBZF (ENSNSUG00000018603)	CCDC89 (ENSNSUG00000018602)	ENSNSUG00000018601	PICALM (ENSNSUG00000018598)	EED (ENSNSUG00000018585) #22	ENSNSUG00000018580	CCDC81 (ENSNSUG00000018575)	ME3 (ENSNSUG00000018568)	PRSS23 (ENSNSUG00000018564)	FZD4 (ENSNSUG00000018563)	TMEM135 (ENSNSUG00000018562)
Eastern brown snake	MODERN SPECIES	33	ENSPTXG00000003187	PRCP (ENSPTXG00000003190)	ENSPTXG00000003563	RAB30 (ENSPTXG00000003564)	PCF11 (ENSPTXG00000003566)	ENSPTXG00000003568	CCDC90B (ENSPTXG00000003570)	DLG2 (ENSPTXG00000003776)	ENSPTXG00000003779	TMEM126A (ENSPTXG00000003780)	CREBZF (ENSPTXG00000003782)	CCDC89 (ENSPTXG00000000099)	SYTL2 (ENSPTXG00000000140)	CCDC83 (ENSPTXG00000000218)	PICALM (ENSPTXG00000000248)	EED (ENSPTXG00000000288) #22	HIKESHI (ENSPTXG00000000303)	CCDC81 (ENSPTXG00000000350)	ME3 (ENSPTXG00000001185)	PRSS23 (ENSPTXG00000001186)	FZD4 (ENSPTXG00000001190)	TMEM135 (ENSPTXG00000001194)	RAB38 (ENSPTXG00000001201)	CTSC (ENSPTXG00000001207)	GRM5 (ENSPTXG00000001252)	TYR (ENSPTXG00000002601)	NOX4 (ENSPTXG00000002912)	FOLH1 (ENSPTXG00000002913)	NAALAD2 (ENSPTXG00000003043)	CHORDC1 (ENSPTXG00000004173)	FAT3 (ENSPTXG00000004176)
Blue-lipped sea krait	MODERN SPECIES	4642																EED (ENSLLTG00000008862) #22	HIKESHI (ENSLLTG00000008968)	CCDC81 (ENSLLTG00000008980)	ENSLLTG00000009021
Lizard	MODERN SPECIES	2	PRCP (ENSACAG00000001032)	ENSACAG00000043810	RAB30 (ENSACAG00000001098)	ANKRD42 (ENSACAG00000001390)	CCDC90B (ENSACAG00000001469)	ENSACAG00000041050	ENSACAG00000001627	ENSACAG00000039241	TMEM126A (ENSACAG00000001894)	CREBZF (ENSACAG00000044560)	CCDC89 (ENSACAG00000027099)	ENSACAG00000001917	CCDC83 (ENSACAG00000002001)	PICALM (ENSACAG00000002037)	ENSACAG00000028726	EED (ENSACAG00000002420) #22	CCDC81 (ENSACAG00000002561)	HIKESHI (ENSACAG00000039755)	ME3 (ENSACAG00000002632)	ENSACAG00000043722	PRSS23 (ENSACAG00000002734)	FZD4 (ENSACAG00000002739)	TMEM135 (ENSACAG00000034771)	CTSC (ENSACAG00000015158)	GRM5 (ENSACAG00000015032)	TYR (ENSACAG00000014963)	ENSACAG00000044205	NOX4 (ENSACAG00000014875)	ENSACAG00000014644	ENSACAG00000037169	NAALAD2 (ENSACAG00000014471)
tuatara	MODERN SPECIES	1945									ENSSPUG00000012759	ENSSPUG00000012740	ENSSPUG00000012730	TMEM126A (ENSSPUG00000012722)	CCDC89 (ENSSPUG00000012713)	ENSSPUG00000012663	PICALM (ENSSPUG00000012595)	EED (ENSSPUG00000012553) #22	HIKESHI (ENSSPUG00000012540)	CCDC81 (ENSSPUG00000012453)	ME3 (ENSSPUG00000012403)	PRSS23 (ENSSPUG00000012392)	ENSSPUG00000012370	ENSSPUG00000012350	ENSSPUG00000012342	ENSSPUG00000012321
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Aves	ANCESTRAL SPECIES	33	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT00950000183127.b.h.a.b	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.a	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958
Galloanserae	ANCESTRAL SPECIES	1	ENSGT01100000265350	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.a.a	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.a.a	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942.c	ENSGT00940000160906	ENSGT00940000153733.A.c	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411
Japanese quail	MODERN SPECIES		ME3 (ENSCJPG00005004170)	PRCP (ENSCJPG00005004171)	ENSCJPG00005004173	RAB30 (ENSCJPG00005004175)	ENSCJPG00005004176	ANKRD42 (ENSCJPG00005004177)	CCDC90B (ENSCJPG00005004187)	ENSCJPG00005004310	ENSCJPG00005004364	TMEM126A (ENSCJPG00005004371)	CREBZF (ENSCJPG00005004375)	CCDC89 (ENSCJPG00005004376)	ENSCJPG00005004380	ENSCJPG00005004381	PICALM (ENSCJPG00005004383)	EED (ENSCJPG00005004385) #22	HIKESHI (ENSCJPG00005004388)	ENSCJPG00005004403	TENM4 (ENSCJPG00005004438)	NARS2 (ENSCJPG00005004456)	GAB2 (ENSCJPG00005004489)	ENSCJPG00005004490	KCTD21 (ENSCJPG00005004491)	ALG8 (ENSCJPG00005004492)	NDUFC2 (ENSCJPG00005004495)	ENSCJPG00005004497	ENSCJPG00005004498	ENSCJPG00005004500	ENSCJPG00005004501	KCTD14 (ENSCJPG00005004503)	INTS4 (ENSCJPG00005004504)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00950000183134.c.a.a	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.a.a	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942.c	ENSGT00940000160906	ENSGT00940000153733.A.c	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411
Turkey	MODERN SPECIES		KCTD14 (ENSMGAG00000015253)	ENSMGAG00000015254	AAMDC (ENSMGAG00000019319)	ENSMGAG00000021463	ENSMGAG00000015251	ENSMGAG00000015250	ENSMGAG00000015249	KCTD21 (ENSMGAG00000017260)	ENSMGAG00000018248	GAB2 (ENSMGAG00000015248)	ENSMGAG00000015247	ENSMGAG00000018402	ENSMGAG00000015244	ENSMGAG00000019282	ENSMGAG00000015242	ENSMGAG00000015239 #22	ENSMGAG00000015241	ENSMGAG00000015238	ENSMGAG00000015237	ENSMGAG00000015637	ENSMGAG00000015236	ENSMGAG00000020506	ENSMGAG00000020572	ENSMGAG00000016818	ENSMGAG00000015234	ENSMGAG00000015232	ENSMGAG00000015233	PCF11 (ENSMGAG00000015231)	ENSMGAG00000015228	ENSMGAG00000015229	ENSMGAG00000015230
Chicken	MODERN SPECIES		FAM181B (ENSGALG00010007854)	PRCP (ENSGALG00010007811)	ENSGALG00010007818	ENSGALG00010007846	RAB30 (ENSGALG00010007979)	PCF11 (ENSGALG00010007991)	ANKRD42 (ENSGALG00010008005)	CCDC90B (ENSGALG00010008012)	DLG2 (ENSGALG00010008069)	TMEM126A (ENSGALG00010008098)	CREBZF (ENSGALG00010009144)	CCDC89 (ENSGALG00010008102)	SYTL2 (ENSGALG00010008111)	CCDC83 (ENSGALG00010008119)	PICALM (ENSGALG00010008170)	EED (ENSGALG00010009092) #22	HIKESHI (ENSGALG00010009101)	ENSGALG00010009107	ENSGALG00010009169	TENM4 (ENSGALG00010009135)	NARS2 (ENSGALG00010001903)	ENSGALG00010001905	GAB2 (ENSGALG00010003818)	USP35 (ENSGALG00010001911)	KCTD21 (ENSGALG00010001928)	ALG8 (ENSGALG00010001938)	NDUFC2 (ENSGALG00010001957)	THRSPB (ENSGALG00010003522)	THRSP (ENSGALG00010001976)	KCTD14 (ENSGALG00010001987)	INTS4 (ENSGALG00010001997)
Anatidae	ANCESTRAL SPECIES	64									ENSGT00940000155156.a.a	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411	ENSGT00390000010063
Duck	MODERN SPECIES		PROSER1 (ENSAPLG00000003606)	STOML3 (ENSAPLG00000003783)	ENSAPLG00000004070	FREM2 (ENSAPLG00000005184)	UFM1 (ENSAPLG00000030396)	FAM181B (ENSAPLG00000030157)	ENSAPLG00000022867	PRCP (ENSAPLG00000012966)	ENSAPLG00000020064	RAB30 (ENSAPLG00000019842)	ENSAPLG00000017312	CCDC89 (ENSAPLG00000011655)	ENSAPLG00000011673	CCDC83 (ENSAPLG00000012173)	PICALM (ENSAPLG00000012265)	EED (ENSAPLG00000012886) #22	HIKESHI (ENSAPLG00000018234)	ENSAPLG00000021685	FCHSD2 (ENSAPLG00000014854)	ENSAPLG00000014513	SERPINH1 (ENSAPLG00000014348)	ENSAPLG00000025890	GDPD5 (ENSAPLG00000011999)	ENSAPLG00000021295	MAP6 (ENSAPLG00000029565)	MOGAT2 (ENSAPLG00000011246)	DGAT2 (ENSAPLG00000011172)	UVRAG (ENSAPLG00000010570)	WNT11 (ENSAPLG00000010439)	THAP12 (ENSAPLG00000010379)	EMSY (ENSAPLG00000010078)
Pink-footed goose	MODERN SPECIES	81										ENSABRG00000005335	ENSABRG00000005304	TMEM126A (ENSABRG00000005297)	CCDC89 (ENSABRG00000005288)	ENSABRG00000005262	PICALM (ENSABRG00000005201)	EED (ENSABRG00000005077) #22	HIKESHI (ENSABRG00000005045)	ENSABRG00000005009	TENM4 (ENSABRG00000004910)	ENSABRG00000004892	GAB2 (ENSABRG00000004871)	USP35 (ENSABRG00000004859)	KCTD21 (ENSABRG00000004855)	ALG8 (ENSABRG00000004842)	NDUFC2 (ENSABRG00000004836)	ENSABRG00000004830	KCTD14 (ENSABRG00000004823)	INTS4 (ENSABRG00000004795)	AAMDC (ENSABRG00000004768)	RSF1 (ENSABRG00000004729)	CLNS1A (ENSABRG00000004719)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.a	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958
Flycatcher	MODERN SPECIES		ME3 (ENSFALG00000007794)	ENSFALG00000007780	PRCP (ENSFALG00000007776)	ENSFALG00000027423	RAB30 (ENSFALG00000007765)	PCF11 (ENSFALG00000007754)	ANKRD42 (ENSFALG00000007744)	CCDC90B (ENSFALG00000007739)	ENSFALG00000007731	ENSFALG00000029086	ENSFALG00000024900	TMEM126A (ENSFALG00000007726)	ENSFALG00000007705	CCDC83 (ENSFALG00000007697)	PICALM (ENSFALG00000007689)	EED (ENSFALG00000007678) #22	HIKESHI (ENSFALG00000023535)	ENSFALG00000026075	TENM4 (ENSFALG00000007664)	NARS2 (ENSFALG00000026154)	GAB2 (ENSFALG00000007657)	USP35 (ENSFALG00000007648)	KCTD21 (ENSFALG00000015047)	ALG8 (ENSFALG00000007638)	ENSFALG00000015022	ENSFALG00000015008	ENSFALG00000022877	KCTD14 (ENSFALG00000024292)	INTS4 (ENSFALG00000007624)	AAMDC (ENSFALG00000027164)	RSF1 (ENSFALG00000007612)
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958
Medium ground finch	MODERN SPECIES	5	ME3 (ENSGFOG00000005337)	PRCP (ENSGFOG00000005352)	ENSGFOG00000005366	RAB30 (ENSGFOG00000005381)	PCF11 (ENSGFOG00000005400)	ANKRD42 (ENSGFOG00000005425)	CCDC90B (ENSGFOG00000005480)	DLG2 (ENSGFOG00000005564)	ENSGFOG00000005841	ENSGFOG00000005844	TMEM126A (ENSGFOG00000005849)	CCDC89 (ENSGFOG00000005856)	ENSGFOG00000005867	CCDC83 (ENSGFOG00000005886)	PICALM (ENSGFOG00000005903)	EED (ENSGFOG00000005964) #22	HIKESHI (ENSGFOG00000005993)	ENSGFOG00000006022	TENM4 (ENSGFOG00000006199)	NARS2 (ENSGFOG00000006269)	GAB2 (ENSGFOG00000006294)	USP35 (ENSGFOG00000006306)	KCTD21 (ENSGFOG00000006319)	ALG8 (ENSGFOG00000006325)	NDUFC2 (ENSGFOG00000006340)
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00390000000155.a.a	ENSGT00950000183134.c.a.a	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT00520000055616.a	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411	ENSGT00390000010063	ENSGT00530000063816.c
Zebra finch	MODERN SPECIES		ME3 (ENSTGUG00000012920)	FAM181B (ENSTGUG00000022639)	PRCP (ENSTGUG00000012934)	ENSTGUG00000021729	RAB30 (ENSTGUG00000020570)	PCF11 (ENSTGUG00000012944)	ANKRD42 (ENSTGUG00000012948)	ENSTGUG00000026995	ENSTGUG00000027854	CCDC90B (ENSTGUG00000012950)	DLG2 (ENSTGUG00000012956)	TMEM126A (ENSTGUG00000012961)	SYTL2 (ENSTGUG00000012963)	ENSTGUG00000012968	PICALM (ENSTGUG00000012969)	EED (ENSTGUG00000012982) #22	HIKESHI (ENSTGUG00000012986)	TENM4 (ENSTGUG00000012991)	NARS2 (ENSTGUG00000013001)	GAB2 (ENSTGUG00000013005)	USP35 (ENSTGUG00000013010)	ENSTGUG00000021851	KCTD21 (ENSTGUG00000028148)	ALG8 (ENSTGUG00000013014)	NDUFC2 (ENSTGUG00000022186)	ENSTGUG00000022842	ENSTGUG00000020689	ENSTGUG00000027862	ENSTGUG00000020386	ENSTGUG00000013017	KCTD14 (ENSTGUG00000013019)
Common canary	MODERN SPECIES	4	FZD4 (ENSSCAG00000003017)	PRSS23 (ENSSCAG00000002988)	ME3 (ENSSCAG00000002985)	PRCP (ENSSCAG00000002976)	ENSSCAG00000002952	RAB30 (ENSSCAG00000002948)	PCF11 (ENSSCAG00000002940)	ANKRD42 (ENSSCAG00000002924)	CCDC90B (ENSSCAG00000002918)	DLG2 (ENSSCAG00000002598)	ENSSCAG00000002488	TMEM126A (ENSSCAG00000002479)	ENSSCAG00000002467	ENSSCAG00000002460	PICALM (ENSSCAG00000001782)	EED (ENSSCAG00000001579) #22	HIKESHI (ENSSCAG00000001551)	TENM4 (ENSSCAG00000001503)	NARS2 (ENSSCAG00000001306)	GAB2 (ENSSCAG00000001264)	USP35 (ENSSCAG00000001248)	ENSSCAG00000001238	KCTD21 (ENSSCAG00000001228)	ALG8 (ENSSCAG00000001149)	NDUFC2 (ENSSCAG00000001114)	KCTD14 (ENSSCAG00000001102)	INTS4 (ENSSCAG00000001084)	AAMDC (ENSSCAG00000001075)	RSF1 (ENSSCAG00000001065)	ENSSCAG00000001060	AQP11 (ENSSCAG00000001051)
Great tit	MODERN SPECIES		ME3 (ENSPMJG00000001028)	FAM181B (ENSPMJG00000001078)	PRCP (ENSPMJG00000001085)	ENSPMJG00000001091	RAB30 (ENSPMJG00000001108)	PCF11 (ENSPMJG00000001112)	ANKRD42 (ENSPMJG00000001132)	CCDC90B (ENSPMJG00000001139)	ENSPMJG00000001264	ENSPMJG00000001563	TMEM126A (ENSPMJG00000001566)	CREBZF (ENSPMJG00000001593)	SYTL2 (ENSPMJG00000001685)	CCDC83 (ENSPMJG00000001732)	PICALM (ENSPMJG00000001746)	EED (ENSPMJG00000001816) #22	HIKESHI (ENSPMJG00000001825)	ENSPMJG00000001878	TENM4 (ENSPMJG00000002222)	NARS2 (ENSPMJG00000002370)	GAB2 (ENSPMJG00000002591)	USP35 (ENSPMJG00000002606)	KCTD21 (ENSPMJG00000002622)	ALG8 (ENSPMJG00000002636)	NDUFC2 (ENSPMJG00000002647)	ENSPMJG00000002650	KCTD14 (ENSPMJG00000002652)	INTS4 (ENSPMJG00000002654)	AAMDC (ENSPMJG00000002671)	RSF1 (ENSPMJG00000002677)	CLNS1A (ENSPMJG00000002686)
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.a	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b.e	ENSGT00500000044890.a.b.f	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411
Golden eagle	MODERN SPECIES	10	PRCP (ENSACCG00020008550)	ENSACCG00020008564	RAB30 (ENSACCG00020008577)	ENSACCG00020008589	PCF11 (ENSACCG00020008605)	ANKRD42 (ENSACCG00020008637)	CCDC90B (ENSACCG00020008670)	ENSACCG00020008763	ENSACCG00020008856	TMEM126A (ENSACCG00020008886)	CREBZF (ENSACCG00020008904)	CCDC89 (ENSACCG00020008913)	ENSACCG00020008947	CCDC83 (ENSACCG00020008977)	PICALM (ENSACCG00020009051)	EED (ENSACCG00020009118) #22	HIKESHI (ENSACCG00020009148)	ENSACCG00020009166	TENM4 (ENSACCG00020009361)	NARS2 (ENSACCG00020009489)	GAB2 (ENSACCG00020009521)	USP35 (ENSACCG00020009536)	KCTD21 (ENSACCG00020009555)	ALG8 (ENSACCG00020009570)	NDUFC2 (ENSACCG00020009583)	ENSACCG00020009591	ENSACCG00020009607	ENSACCG00020009616	KCTD14 (ENSACCG00020009629)	INTS4 (ENSACCG00020009671)	AAMDC (ENSACCG00020009724)
Kakapo	MODERN SPECIES	11	PRCP (ENSSHBG00005000200)	ENSSHBG00005000219	RAB30 (ENSSHBG00005000224)	PCF11 (ENSSHBG00005001785)	ANKRD42 (ENSSHBG00005001836)	CCDC90B (ENSSHBG00005001860)	ENSSHBG00005003273	ENSSHBG00005016026	TMEM126A (ENSSHBG00005016034)	CREBZF (ENSSHBG00005016039)	CCDC89 (ENSSHBG00005016044)	ENSSHBG00005016046	ENSSHBG00005016055	CCDC83 (ENSSHBG00005016062)	PICALM (ENSSHBG00005016076)	EED (ENSSHBG00005016083) #22	HIKESHI (ENSSHBG00005016088)	ENSSHBG00005016096	TENM4 (ENSSHBG00005016336)	NARS2 (ENSSHBG00005019116)	GAB2 (ENSSHBG00005019121)	USP35 (ENSSHBG00005019128)	KCTD21 (ENSSHBG00005019132)	ALG8 (ENSSHBG00005019138)	NDUFC2 (ENSSHBG00005019140)	ENSSHBG00005019141	ENSSHBG00005019143	KCTD14 (ENSSHBG00005019145)	ENSSHBG00005019147	AAMDC (ENSSHBG00005019150)	RSF1 (ENSSHBG00005019153)
African ostrich	MODERN SPECIES	538														CCDC83 (ENSSCUG00000004709)	PICALM (ENSSCUG00000004695)	EED (ENSSCUG00000004682) #22	HIKESHI (ENSSCUG00000004675)	ENSSCUG00000004666	TENM4 (ENSSCUG00000004650)	ENSSCUG00000004646	NARS2 (ENSSCUG00000004641)	ENSSCUG00000004638	GAB2 (ENSSCUG00000004633)	USP35 (ENSSCUG00000004630)	KCTD21 (ENSSCUG00000004628)	ALG8 (ENSSCUG00000004620)	NDUFC2 (ENSSCUG00000004615)
Australian saltwater crocodile	MODERN SPECIES	27	TENM4 (ENSCPRG00005016289)	ENSCPRG00005016261	PRCP (ENSCPRG00005016228)	DDIAS (ENSCPRG00005016217)	RAB30 (ENSCPRG00005016207)	PCF11 (ENSCPRG00005016193)	ANKRD42 (ENSCPRG00005016174)	CCDC90B (ENSCPRG00005016161)	ENSCPRG00005016157	ENSCPRG00005016151	ENSCPRG00005016140	TMEM126A (ENSCPRG00005016136)	ENSCPRG00005016131	CCDC83 (ENSCPRG00005016129)	PICALM (ENSCPRG00005016082)	EED (ENSCPRG00005016068) #22	HIKESHI (ENSCPRG00005016067)	ME3 (ENSCPRG00005016065)	PRSS23 (ENSCPRG00005016061)	FZD4 (ENSCPRG00005016056)	TMEM135 (ENSCPRG00005016050)	RAB38 (ENSCPRG00005016034)	CTSC (ENSCPRG00005016032)	GRM5 (ENSCPRG00005016003)	TYR (ENSCPRG00005015987)	NOX4 (ENSCPRG00005015970)	FOLH1 (ENSCPRG00005015598)	ENSCPRG00005015519	ENSCPRG00005015516	CHORDC1 (ENSCPRG00005015503)	FAT3 (ENSCPRG00005015491)
Cryptodira	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT01100000265350	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787.o	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	41	DDIAS (ENSTMTG00000016280)	RAB30 (ENSTMTG00000016291)	ENSTMTG00000016303	PCF11 (ENSTMTG00000016313)	ENSTMTG00000016349	ENSTMTG00000016360	CCDC90B (ENSTMTG00000016374)	ENSTMTG00000016399	ENSTMTG00000016416	ENSTMTG00000016448	TMEM126A (ENSTMTG00000016454)	CREBZF (ENSTMTG00000016468)	CCDC89 (ENSTMTG00000016486)	ENSTMTG00000016506	PICALM (ENSTMTG00000016582)	ENSTMTG00000016675 #22	HIKESHI (ENSTMTG00000016701)	ME3 (ENSTMTG00000016711)	PRSS23 (ENSTMTG00000016824)	FZD4 (ENSTMTG00000016832)	ENSTMTG00000016839	ENSTMTG00000016850	RAB38 (ENSTMTG00000016878)	ENSTMTG00000016889	GRM5 (ENSTMTG00000016932)	TYR (ENSTMTG00000017343)	NOX4 (ENSTMTG00000017371)	ENSTMTG00000017415	FOLH1 (ENSTMTG00000017450)	NAALAD2 (ENSTMTG00000018096)	CHORDC1 (ENSTMTG00000020258)
Three-toed box turtle	MODERN SPECIES	1927																ENSTMTG00000012370 #22
painted turtle	MODERN SPECIES	753	PRCP (ENSCPBG00000006891)	DDIAS (ENSCPBG00000006875)	RAB30 (ENSCPBG00000006855)	PCF11 (ENSCPBG00000006842)	ANKRD42 (ENSCPBG00000006830)	CCDC90B (ENSCPBG00000006821)	ENSCPBG00000006811	ENSCPBG00000006766	ENSCPBG00000006719	TMEM126A (ENSCPBG00000006706)	CREBZF (ENSCPBG00000006697)	CCDC89 (ENSCPBG00000006691)	ENSCPBG00000006665	CCDC83 (ENSCPBG00000006650)	PICALM (ENSCPBG00000006596)	EED (ENSCPBG00000006558) #22	HIKESHI (ENSCPBG00000006540)	CCDC81 (ENSCPBG00000006529)	ME3 (ENSCPBG00000006522)	PRSS23 (ENSCPBG00000006510)	FZD4 (ENSCPBG00000006503)	TMEM135 (ENSCPBG00000006491)
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000016046	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00960000190865	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a
Abingdon island giant tortoise	MODERN SPECIES	2453							ENSCABG00000019849	GCLC (ENSCABG00000019845)	ELOVL5 (ENSCABG00000019838)	GCM1 (ENSCABG00000019835)	FBXO9 (ENSCABG00000019830)	CILK1 (ENSCABG00000019810)	ENSCABG00000019808	ENSCABG00000019687	ENSCABG00000019612	EED (ENSCABG00000019569) #22	HIKESHI (ENSCABG00000019563)	CCDC81 (ENSCABG00000019555)	ENSCABG00000019551	ENSCABG00000019550	ENSCABG00000019549	PRSS23 (ENSCABG00000019546)
Goode s thornscrub tortoise	MODERN SPECIES		FAM181B (ENSGEVG00005001798)	PRCP (ENSGEVG00005001811)	DDIAS (ENSGEVG00005001827)	RAB30 (ENSGEVG00005001843)	PCF11 (ENSGEVG00005001855)	ENSGEVG00005001874	ENSGEVG00005001886	CCDC90B (ENSGEVG00005001904)	DLG2 (ENSGEVG00005001935)	ENSGEVG00005002025	TMEM126A (ENSGEVG00005002036)	CREBZF (ENSGEVG00005002049)	CCDC89 (ENSGEVG00005002061)	SYTL2 (ENSGEVG00005002100)	PICALM (ENSGEVG00005002184)	EED (ENSGEVG00005002273) #22	ENSGEVG00005002287	CCDC81 (ENSGEVG00005002301)	ME3 (ENSGEVG00005002332)	ENSGEVG00005002358	ENSGEVG00005002369	PRSS23 (ENSGEVG00005002374)	FZD4 (ENSGEVG00005002383)	TMEM135 (ENSGEVG00005002398)	RAB38 (ENSGEVG00005002424)	CTSC (ENSGEVG00005002445)	GRM5 (ENSGEVG00005002494)	TYR (ENSGEVG00005002619)	ENSGEVG00005002630	NOX4 (ENSGEVG00005002640)	ENSGEVG00005002656
Chinese turtle	MODERN SPECIES	706											TMEM126A (ENSPSIG00000006667)	CCDC89 (ENSPSIG00000001567)	ENSPSIG00000006701	CCDC83 (ENSPSIG00000007052)	PICALM (ENSPSIG00000009433)	EED (ENSPSIG00000010993) #22	HIKESHI (ENSPSIG00000011852)	CCDC81 (ENSPSIG00000012206)	ME3 (ENSPSIG00000012232)	PRSS23 (ENSPSIG00000013760)	FZD4 (ENSPSIG00000013806)	TMEM135 (ENSPSIG00000013965)	ENSPSIG00000014919	RAB38 (ENSPSIG00000015574)	CTSC (ENSPSIG00000015613)	TYR (ENSPSIG00000016986)	NOX4 (ENSPSIG00000017588)	FOLH1 (ENSPSIG00000017747)	NAALAD2 (ENSPSIG00000017958)	CHORDC1 (ENSPSIG00000006884)	ENSPSIG00000001573
Anura	ANCESTRAL SPECIES	28	ENSGT01030000234566.e.b.b.a	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00940000155843	ENSGT00390000013087	ENSGT00950000183068.a.b	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00940000157141	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336.f	ENSGT00940000159621	ENSGT01030000234598.b.a.b.i	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Frog	MODERN SPECIES	2	prcp (ENSXETG00000023175)	FAM181B (ENSXETG00000037323)	ENSXETG00000042576	ENSXETG00000047484	ENSXETG00000046737	tenm4 (ENSXETG00000015288)	klhdc1 (ENSXETG00000010455)	gab2 (ENSXETG00000010452)	usp35 (ENSXETG00000010451)	alg8 (ENSXETG00000010450)	kctd14 (ENSXETG00000010449)	ints4 (ENSXETG00000010447)	aamdc (ENSXETG00000038985)	rsf1 (ENSXETG00000010445)	clns1a (ENSXETG00000010442)	eed (ENSXETG00000010440) #22	hikeshi (ENSXETG00000010439)	ccdc81 (ENSXETG00000010437)	me3 (ENSXETG00000010436)	prss23 (ENSXETG00000044339)	fzd4 (ENSXETG00000034910)	tmem135 (ENSXETG00000010432)	ENSXETG00000035317	ENSXETG00000011752	rab38 (ENSXETG00000011751)	ctsc (ENSXETG00000011748)	grm5 (ENSXETG00000011740)	tyr (ENSXETG00000011738)	nox4 (ENSXETG00000011734)	ENSXETG00000042189	ENSXETG00000040698
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003139	RNF169 (ENSLLEG00000003192)	XRRA1 (ENSLLEG00000003211)	ENSLLEG00000003281	NEU3 (ENSLLEG00000003294)	ENSLLEG00000003327	ENSLLEG00000003335	ENSLLEG00000003345	ENSLLEG00000003395	RSF1 (ENSLLEG00000003406)	ENSLLEG00000003432	CLNS1A (ENSLLEG00000003456)	AQP11 (ENSLLEG00000003475)	PICALM (ENSLLEG00000003542)	ENSLLEG00000003726	EED (ENSLLEG00000003752) #22	ENSLLEG00000003796	MOCS3 (ENSLLEG00000003803)	CCDC81 (ENSLLEG00000003829)	ENSLLEG00000003887	PRSS23 (ENSLLEG00000003893)	ENSLLEG00000003900	ME3 (ENSLLEG00000003909)	ENSLLEG00000004141	FZD4 (ENSLLEG00000004168)	ENSLLEG00000004175	TMEM135 (ENSLLEG00000004184)	KCTD14 (ENSLLEG00000004200)	ENSLLEG00000004206	THRSP (ENSLLEG00000004209)	ENSLLEG00000004211
Coelacanth	MODERN SPECIES	464									ENSLACG00000016646	TMEM126A (ENSLACG00000016479)	CREBZF (ENSLACG00000016406)	ELAC1 (ENSLACG00000016367)	ENSLACG00000016175	ENSLACG00000022643	PICALM (ENSLACG00000014492)	EED (ENSLACG00000013624) #22	HIKESHI (ENSLACG00000013404)	CCDC81 (ENSLACG00000012549)	ME3 (ENSLACG00000009057)	PRSS23 (ENSLACG00000007588)
Actinopterygii	ANCESTRAL SPECIES	32	ENSGT00390000005596.a	ENSGT00940000159169	ENSGT00510000047809	ENSGT00530000063558.A	ENSGT00530000063503.a.a	ENSGT00940000157308	ENSGT00530000063907.d	ENSGT00390000010779.a.b.b	ENSGT00530000063169.b.b	ENSGT00390000010218	ENSGT00900000141090	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b	ENSGT00950000183058.A.a	ENSGT00940000160248	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000158209	ENSGT00940000154474.A
Neopterygii	ANCESTRAL SPECIES	15	ENSGT00390000005596.a	ENSGT00940000159169	ENSGT00510000047809	ENSGT00530000063558.A	ENSGT00530000063503.a.a	ENSGT00940000157308	ENSGT00530000063907.d	ENSGT00390000010779.a.b.b	ENSGT00530000063169.b.b	ENSGT00390000010218	ENSGT00900000141090	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b	ENSGT00950000183058.A.a	ENSGT00940000160248	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209
Osteoglossocephalai	ANCESTRAL SPECIES	129											ENSGT00390000010218	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00950000183134.c.a.a	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677	ENSGT00940000154474.A
Osteoglossiformes	ANCESTRAL SPECIES	92	ENSGT01050000244905.D.b	ENSGT01050000244905.F.a	ENSGT00390000010463.a.b.b	ENSGT00390000006330.a.a.a	ENSGT00390000002174.b	ENSGT00530000063599.B.f	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b.e.b	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.g.a	ENSGT00940000161997.a	ENSGT00390000013151.a.a.a.e	ENSGT00390000012561.b.ob	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000018895.a.c	ENSGT00950000183058.A.a.f	ENSGT00940000154851.A.b	ENSGT00940000159723	ENSGT00940000154652.n	ENSGT01030000234579.B.b	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00940000163254	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000159499	ENSGT00940000159677.a.b
Asian bonytongue	MODERN SPECIES	5	ncam2 (ENSSFOG00015016108)	ENSSFOG00015029109	ADAMTS1 (ENSSFOG00015027602)	cyyr1 (ENSSFOG00015016068)	ENSSFOG00015016010	ENSSFOG00015031552	ENSSFOG00015015902	ENSSFOG00015015887	txnl4b (ENSSFOG00015027515)	pcnp (ENSSFOG00015015871)	rpl24 (ENSSFOG00015015863)	cep97 (ENSSFOG00015015856)	ENSSFOG00015025764	ENSSFOG00015029353	ENSSFOG00015032793	eed (ENSSFOG00015023408) #22	hikeshi (ENSSFOG00015023419)	tmem39a (ENSSFOG00015029844)	ENSSFOG00015032534	ENSSFOG00015000151	dusp27 (ENSSFOG00015000217)	ENSSFOG00015000231	ENSSFOG00015030454	ENSSFOG00015000252	ENSSFOG00015000387	ENSSFOG00015025471	ENSSFOG00015000478	cpox (ENSSFOG00015000500)	prrg1 (ENSSFOG00015024994)	ENSSFOG00015000545	ENSSFOG00015025496
P. kingsleyae	MODERN SPECIES	886																eed (ENSPKIG00000025571) #22
Clupeocephala	ANCESTRAL SPECIES	109													ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677
Otomorpha	ANCESTRAL SPECIES	104												ENSGT00940000164201.c.b.a	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Otophysi	ANCESTRAL SPECIES	60											ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a	ENSGT00950000183105.A	ENSGT00910000144283.r	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00940000165888.f	ENSGT00390000006290	ENSGT00940000175812	ENSGT00940000168744	ENSGT01030000234915.b.a.a	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916.ab	ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a.c	ENSGT00950000183105.A	ENSGT00910000144283.q.a	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00940000165888.f	ENSGT00390000006290	ENSGT00940000175812	ENSGT00940000168744	ENSGT01030000234915.b.a.a	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916.ab	ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a.c	ENSGT00950000183105.A	ENSGT00910000144283.q.a	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000165888.f	ENSGT00390000006290	ENSGT00940000163871.a.d.c	ENSGT00940000156984.a.a	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916.ab	ENSGT00940000164201.c.b.b.a	ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a.c.c	ENSGT00950000183105.A	ENSGT00910000144283.q.a	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Mexicana tetra	MODERN SPECIES	3	GJA3 (ENSAMXG00000024831)	pspc1 (ENSAMXG00000036881)	ENSAMXG00000024832	ENSAMXG00000030337	ENSAMXG00000038532	ENSAMXG00000015779	ENSAMXG00000030475	ENSAMXG00000040238	ENSAMXG00000043681	ENSAMXG00000015797	ENSAMXG00000031827	rpl24 (ENSAMXG00000015842)	ENSAMXG00000043000	cep97 (ENSAMXG00000015863)	NFKBIZ (ENSAMXG00000015888)	eed (ENSAMXG00000015898) #22	hikeshi (ENSAMXG00000034127)	CCDC81 (ENSAMXG00000015928)	PRSS23 (ENSAMXG00000024833)	tmem39a (ENSAMXG00000015939)	ENSAMXG00000043219	ildr1a (ENSAMXG00000039418)	ILDR2 (ENSAMXG00000038621)	ENSAMXG00000030850	ENSAMXG00000016020	dusp27 (ENSAMXG00000033251)	ENSAMXG00000037806	CD247 (ENSAMXG00000030068)	creg1 (ENSAMXG00000039279)	ENSAMXG00000039576	ENSAMXG00000016092
Red-bellied piranha	MODERN SPECIES	78												ENSPNAG00000001998	rpl24 (ENSPNAG00000011883)	ENSPNAG00000011855	NFKBIZ (ENSPNAG00000011841)	eed (ENSPNAG00000001959) #22	hikeshi (ENSPNAG00000011803)	CCDC81 (ENSPNAG00000011655)	PRSS23 (ENSPNAG00000011642)	tmem39a (ENSPNAG00000001839)	ildr1a (ENSPNAG00000005869)	ILDR2 (ENSPNAG00000011585)	ENSPNAG00000011569	ENSPNAG00000001789	dusp27 (ENSPNAG00000001783)	ENSPNAG00000011512	CD247 (ENSPNAG00000011477)	creg1 (ENSPNAG00000001749)	ENSPNAG00000011463	ENSPNAG00000011459	f7l (ENSPNAG00000011388)
Electric eel	MODERN SPECIES	8	ENSEEEG00000011808	ENSEEEG00000011809	ENSEEEG00000011810	fgf14 (ENSEEEG00000011811)	GJB6 (ENSEEEG00000011812)	ENSEEEG00000011814	GJA3 (ENSEEEG00000011817)	pspc1 (ENSEEEG00000011818)	ENSEEEG00000011875	ENSEEEG00000011876	ENSEEEG00000011878	ENSEEEG00000011879	rpl24 (ENSEEEG00000011882)	cep97 (ENSEEEG00000011885)	NFKBIZ (ENSEEEG00000011887)	eed (ENSEEEG00000011894) #22	hikeshi (ENSEEEG00000011906)	PRSS23 (ENSEEEG00000011921)	tmem39a (ENSEEEG00000011922)	ildr1a (ENSEEEG00000011924)	ILDR2 (ENSEEEG00000011925)	GPA33 (ENSEEEG00000011929)	ENSEEEG00000011935	dusp27 (ENSEEEG00000011939)	ENSEEEG00000011940	CD247 (ENSEEEG00000011941)	creg1 (ENSEEEG00000011942)	ENSEEEG00000011943	ENSEEEG00000011944	f7i (ENSEEEG00000011945)	f10 (ENSEEEG00000012023)
Channel catfish	MODERN SPECIES	18	zgc:136472 (ENSIPUG00000013078)	Fgf14 (ENSIPUG00000013131)	pspc1 (ENSIPUG00000013192)	ENSIPUG00000013264	FDX1 (ENSIPUG00000013307)	ENSIPUG00000013331	ENSIPUG00000013364	ENSIPUG00000013391	ENSIPUG00000013435	ENSIPUG00000013531	ENSIPUG00000013540	rpl24 (ENSIPUG00000013552)	ENSIPUG00000013601	ENSIPUG00000013606	nfkbiz (ENSIPUG00000013611)	eed (ENSIPUG00000013630) #22	hikeshi (ENSIPUG00000013670)	ENSIPUG00000013703	ENSIPUG00000013716	cckbra (ENSIPUG00000013725)	NALF1 (ENSIPUG00000013739)	lig4 (ENSIPUG00000013748)	irs2a (ENSIPUG00000013753)	RAB20 (ENSIPUG00000013758)	cars2 (ENSIPUG00000013774)	Ube2a (ENSIPUG00000013875)	ing1 (ENSIPUG00000013868)	ankrd10 (ENSIPUG00000013887)	hsf2bp (ENSIPUG00000013890)	ENSIPUG00000013895	cryaa (ENSIPUG00000013900)
Cyprinoidei	ANCESTRAL SPECIES	34													ENSGT00950000183105.A	ENSGT00910000144283.r	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Zebrafish	MODERN SPECIES													rpl24 (ENSDARG00000099104)	cep97 (ENSDARG00000102407)	NFKBIZ (ENSDARG00000102097)	ENSDARG00000099319	eed (ENSDARG00000099640) #22	hikeshi (ENSDARG00000104071)	tmem39a (ENSDARG00000102746)	ildr1a (ENSDARG00000103929)	ENSDARG00000101073	gpa33a (ENSDARG00000100223)	f7l (ENSDARG00000100782)	f7 (ENSDARG00000034862)	f7i (ENSDARG00000075827)	f10 (ENSDARG00000088581)	prozb (ENSDARG00000076900)	pcid2 (ENSDARG00000013802)	cul4a (ENSDARG00000096578)	ENSDARG00000109848	LAMP1 (ENSDARG00000100181)	grtp1a (ENSDARG00000029936)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	279															ENSGT00940000153695.B.b	ENSGT00510000047334.o #22	ENSGT00390000004056	ENSGT00390000000155.a.a.a	ENSGT00390000018895.a.e	ENSGT00950000183058.A.b.b.j	ENSGT00950000183058.A.a.d.a	ENSGT00940000160248.b	ENSGT00940000154851.A.c.a	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a.i	ENSGT00940000153118.f	ENSGT00940000158209	ENSGT00940000154474.A.i	ENSGT00940000154474.B.a.i
Cyprininae_a	ANCESTRAL SPECIES	277															ENSGT00940000153695.B.b	ENSGT00510000047334.o #22	ENSGT00390000004056	ENSGT00390000011985	ENSGT00390000000155.a.a.a	ENSGT00390000018895.a.e	ENSGT00950000183058.A.b.b.j	ENSGT00950000183058.A.a.d.a	ENSGT00940000160248.b	ENSGT00940000154851.A.c.a	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a.i	ENSGT00940000153118.f	ENSGT00940000158209	ENSGT00940000154474.A.i
Common carp reference	MODERN SPECIES	27													cep97 (ENSCCRG00000032957)	rpl24 (ENSCCRG00000032964)	ENSCCRG00000064482	eed (ENSCCRG00000001122) #22	hikeshi (ENSCCRG00000001128)	ENSCCRG00000060980	tmem39a (ENSCCRG00000047906)	ILDR2 (ENSCCRG00000082215)	ENSCCRG00000070152	ENSCCRG00000079561	ENSCCRG00000063707	STYXL2 (ENSCCRG00000018027)	ENSCCRG00000060903	CD247 (ENSCCRG00000058388)	creg1 (ENSCCRG00000017997)	ENSCCRG00000065089	ENSCCRG00000018008	f7l (ENSCCRG00000077146)	ENSCCRG00000069274
Golden-line barbel	MODERN SPECIES	2666																ENSSGRG00000010968 #22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	18	ENSCARG00000014050	mettl21e (ENSCARG00000014035)	trmt10c (ENSCARG00000014028)	mrpl16 (ENSCARG00000014021)	ENSCARG00000014017	ENSCARG00000014007	jam2a (ENSCARG00000013978)	atp5pf (ENSCARG00000013964)	APP (ENSCARG00000005185)	cyyr1 (ENSCARG00000004821)	ADAMTS1 (ENSCARG00000004657)	ADAMTS5 (ENSCARG00000004544)	NCAM2 (ENSCARG00000004349)	rpl24 (ENSCARG00000004310)	cep97 (ENSCARG00000004292)	eed (ENSCARG00000004215) #22	hikeshi (ENSCARG00000004190)	FAM184A (ENSCARG00000004101)	mcm9 (ENSCARG00000004082)	PLN (ENSCARG00000004074)	CEP85L (ENSCARG00000004048)	si:dkeyp-114g9.1 (ENSCARG00000004018)	SLC35F1 (ENSCARG00000070178)	nus1 (ENSCARG00000070177)	ENSCARG00000070176	gopc (ENSCARG00000070175)	dcbld1 (ENSCARG00000070174)	vgll2a (ENSCARG00000070173)	rfx6 (ENSCARG00000070161)	tdrd15 (ENSCARG00000070155)	ube2f (ENSCARG00000070154)
Goldfish	MODERN SPECIES	18	ENSCARG00000014764	grk1a (ENSCARG00000014773)	tfdp1b (ENSCARG00000014786)	ENSCARG00000014792	ENSCARG00000014797	f10 (ENSCARG00000014838)	f7 (ENSCARG00000014870)	f7l (ENSCARG00000014881)	ENSCARG00000014896	ENSCARG00000014903	ENSCARG00000014906	ENSCARG00000014930	dusp27 (ENSCARG00000014946)	rpl24 (ENSCARG00000014961)	cep97 (ENSCARG00000014981)	eed (ENSCARG00000015002) #22	hikeshi (ENSCARG00000015061)	PRSS23 (ENSCARG00000015089)	tmem39a (ENSCARG00000015108)	ildr1a (ENSCARG00000015164)	ENSCARG00000015178	ENSCARG00000015190	ENSCARG00000015217	ENSCARG00000015235	ildr1a (ENSCARG00000015244)	ILDR2 (ENSCARG00000015253)	ENSCARG00000015264	ENSCARG00000015278	dusp27 (ENSCARG00000015286)
Cyprininae	ANCESTRAL SPECIES	119												ENSGT00940000157887.s	ENSGT00950000183105.A.j.b	ENSGT00910000144283.r.b	ENSGT00940000153695.B.a	ENSGT00510000047334.p #22	ENSGT00390000011985	ENSGT00390000000155.a.a.b	ENSGT00390000018895.a.f	ENSGT00950000183058.A.a.d.b	ENSGT00940000154851.A.d	ENSGT00940000157831.l.a	ENSGT00990000210185	ENSGT00390000005914.a.j	ENSGT00940000153118.e	ENSGT00940000154474.A.j	ENSGT00940000154474.B.a.j	ENSGT00940000154474.B.b	ENSGT00940000157694.d	ENSGT00940000154505.A.c	ENSGT00390000001101
Goldfish	MODERN SPECIES		ENSCARG00000027951	zgc:112980 (ENSCARG00000027908)	mief2 (ENSCARG00000027888)	alkbh5 (ENSCARG00000027876)	syngr3b (ENSCARG00000027857)	CACNA1H (ENSCARG00000027752)	grapb (ENSCARG00000027726)	FAM83G (ENSCARG00000027695)	SLC5A10 (ENSCARG00000027618)	ENSCARG00000027605	dnajb14 (ENSCARG00000027554)	RPL24 (ENSCARG00000027519)	ENSCARG00000027511	cep97 (ENSCARG00000027486)	NFKBIZ (ENSCARG00000027405)	eed (ENSCARG00000027290) #22	ENSCARG00000027275	ENSCARG00000027269	tmem39a (ENSCARG00000027247)	ildr1a (ENSCARG00000027236)	ENSCARG00000027230	ENSCARG00000027229	ENSCARG00000027218	ENSCARG00000027205	ENSCARG00000027202	ENSCARG00000027196	ENSCARG00000027148	ENSCARG00000027126	creg1 (ENSCARG00000027114)	ENSCARG00000027108	ENSCARG00000027103
Cyprininae_a	ANCESTRAL SPECIES	125												ENSGT00940000157887.s	ENSGT00950000183105.A.j.b	ENSGT00910000144283.r.b	ENSGT00940000153695.B.a	ENSGT00510000047334.p #22	ENSGT00390000000155.a.a.b	ENSGT00390000018895.a.f	ENSGT00950000183058.A.a.d.b	ENSGT00940000154851.A.d	ENSGT00940000157831.l.a	ENSGT00990000210185	ENSGT00390000005914.a.j	ENSGT00940000153118.e	ENSGT00940000154474.A.j	ENSGT00940000154474.B.a.j	ENSGT00940000154474.B.b	ENSGT00940000157694.d	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000156905.a
Common carp reference	MODERN SPECIES	22	ENSCCRG00000063311	ENSCCRG00000075744	ENSCCRG00000049719	ENSCCRG00000040866	ENSCCRG00000059685	ENSCCRG00000068564	ENSCCRG00000081556	ENSCCRG00000009584	ENSCCRG00000071229	ENSCCRG00000022172	ENSCCRG00000069831	ENSCCRG00000059608	rpl24 (ENSCCRG00000082332)	cep97 (ENSCCRG00000050490)	NFKBIZ (ENSCCRG00000050489)	eed (ENSCCRG00000051665) #22	ENSCCRG00000028755	tmem39a (ENSCCRG00000024492)	ildr1a (ENSCCRG00000047905)	ENSCCRG00000073453	ENSCCRG00000014946	ENSCCRG00000001008	ENSCCRG00000076913	ENSCCRG00000000977	ENSCCRG00000000954	ENSCCRG00000075371	f7 (ENSCCRG00000055192)	f7i (ENSCCRG00000052477)	f10 (ENSCCRG00000052475)	prozb (ENSCCRG00000017700)	pcid2 (ENSCCRG00000017657)
Golden-line barbel	MODERN SPECIES	413		f7 (ENSSGRG00000008190)	f7l (ENSSGRG00000008187)	ENSSGRG00000008183	creg1 (ENSSGRG00000008182)	ENSSGRG00000008181	ENSSGRG00000008180	ENSSGRG00000008178	ENSSGRG00000008177	ENSSGRG00000008176	tmem39a (ENSSGRG00000008171)	PRSS23 (ENSSGRG00000008170)	rpl24 (ENSSGRG00000008166)	cep97 (ENSSGRG00000008165)	NFKBIZ (ENSSGRG00000008127)	eed (ENSSGRG00000007840) #22	dnajb14 (ENSSGRG00000007823)	PCDH8 (ENSSGRG00000007820)	sugt1 (ENSSGRG00000007818)
Clupeiformes	ANCESTRAL SPECIES	126												ENSGT00940000164201.c.b.a	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00390000000155.a.a	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00940000179735	ENSGT01020000232945	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209
Denticle herring	MODERN SPECIES	6	adprhl1 (ENSDCDG00000024624)	ENSDCDG00000024622	ENSDCDG00000024620	CARS2 (ENSDCDG00000024503)	irs2a (ENSDCDG00000024480)	lig4 (ENSDCDG00000024475)	NALF1 (ENSDCDG00000024471)	ENSDCDG00000024467	ENSDCDG00000021371	ENSDCDG00000035273	ENSDCDG00000035271	mxg (ENSDCDG00000035242)	rpl24 (ENSDCDG00000035229)	cep97 (ENSDCDG00000035228)	NFKBIZ (ENSDCDG00000035223)	eed (ENSDCDG00000035214) #22	hikeshi (ENSDCDG00000035211)	PRSS23 (ENSDCDG00000035208)	tmem39a (ENSDCDG00000035207)	ildr1a (ENSDCDG00000035206)	ILDR2 (ENSDCDG00000035204)	ENSDCDG00000035202	ENSDCDG00000035199	dusp27 (ENSDCDG00000035196)	ENSDCDG00000035194	ENSDCDG00000035193	creg1 (ENSDCDG00000035191)	ENSDCDG00000035190	ENSDCDG00000035187	f7l (ENSDCDG00000035158)	f7 (ENSDCDG00000035136)
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000003389	ENSCHAG00000002942	creg1 (ENSCHAG00000002868)	CD247 (ENSCHAG00000002834)	dusp27 (ENSCHAG00000002811)	ENSCHAG00000002497	ENSCHAG00000002650	ENSCHAG00000023661	ENSCHAG00000023651	ENSCHAG00000023647	ENSCHAG00000023641	ENSCHAG00000023627	ENSCHAG00000023624	rpl24 (ENSCHAG00000023610)	lig4 (ENSCHAG00000023608)	eed (ENSCHAG00000023540) #22	hikeshi (ENSCHAG00000023518)	ildr1a (ENSCHAG00000023509)	tmem39a (ENSCHAG00000023500)
Euteleosteomorpha	ANCESTRAL SPECIES	563																ENSGT00510000047334 #22	ENSGT00390000004056
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00510000047334 #22
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000158614	ENSGT00940000156634.b	ENSGT00940000158687.a.b	ENSGT00940000159723	ENSGT00940000154851.A
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Tiger tail seahorse	MODERN SPECIES	404	ENSHCOG00000018520	actr3 (ENSHCOG00000018497)	LYPD1 (ENSHCOG00000018450)	ENSHCOG00000018442	NCKAP5 (ENSHCOG00000018424)	OSBPL11 (ENSHCOG00000018415)	ENSHCOG00000018361	gpd1c (ENSHCOG00000018335)	ENSHCOG00000018303	ENSHCOG00000018263	ENSHCOG00000018192	ENSHCOG00000018182	ENSHCOG00000018153	ENSHCOG00000018137	pwp2h (ENSHCOG00000018121)	eed (ENSHCOG00000018019) #22	ATP7B (ENSHCOG00000017943)	LRRC3 (ENSHCOG00000017887)	ENSHCOG00000017868	ENSHCOG00000017845	gpd2 (ENSHCOG00000017803)	NR4A2 (ENSHCOG00000017757)	TUBA4A (ENSHCOG00000017595)	ENSHCOG00000017484	SLC9A2 (ENSHCOG00000017234)	inpp4ab (ENSHCOG00000016979)	zgc:113142 (ENSHCOG00000016820)	ALS2 (ENSHCOG00000016773)	MPP4 (ENSHCOG00000016686)	tmem237b (ENSHCOG00000015966)	cyp20a1 (ENSHCOG00000015947)
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00940000155065.yb	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939
Oryzias	ANCESTRAL SPECIES	40	ENSGT00390000012561.b.pb.b	ENSGT00940000166136	ENSGT00940000167103	ENSGT00940000158539.b	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233.c	ENSGT01040000240400.c.a.b.b	ENSGT00950000183208.A.c.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Oryzias_b	ANCESTRAL SPECIES	50	ENSGT00940000166136	ENSGT00940000160835	ENSGT00940000167103	ENSGT00940000158539.b	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233.c	ENSGT01040000240400.c.a.b.b	ENSGT00950000183208.A.c.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000000641	ENSOJAG00000000634	KIF5C (ENSOJAG00000000574)	ENSOJAG00000000556	MBD5 (ENSOJAG00000000554)	orc4 (ENSOJAG00000000527)	ACVR2A (ENSOJAG00000000471)	ENSOJAG00000000428	ENSOJAG00000000414	zeb2b (ENSOJAG00000000338)	ENSOJAG00000000086	ENSOJAG00000000067	ENSOJAG00000022984	ENSOJAG00000022978	ENSOJAG00000022951	eed (ENSOJAG00000022814) #22	ATP7B (ENSOJAG00000022389)	LRRC3 (ENSOJAG00000022345)	ENSOJAG00000022299	ENSOJAG00000022286	gpd2 (ENSOJAG00000021848)	TUBA4A (ENSOJAG00000021745)	ENSOJAG00000021533	ENSOJAG00000021491	inpp4ab (ENSOJAG00000020924)	zgc:113142 (ENSOJAG00000020888)	ENSOJAG00000020865	ENSOJAG00000020858	ENSOJAG00000020853	ENSOJAG00000020823	ENSOJAG00000020803
Indian medaka	MODERN SPECIES	20	ENSOMEG00000020053	ENSOMEG00000020061	KIF5C (ENSOMEG00000020228)	MBD5 (ENSOMEG00000020281)	orc4 (ENSOMEG00000020335)	ACVR2A (ENSOMEG00000020423)	ENSOMEG00000020445	ENSOMEG00000020453	zeb2b (ENSOMEG00000020511)	FAM171B (ENSOMEG00000020541)	ENSOMEG00000020567	ENSOMEG00000020589	ENSOMEG00000020601	ENSOMEG00000020623	pwp2h (ENSOMEG00000020671)	eed (ENSOMEG00000020708) #22	ENSOMEG00000020746	ENSOMEG00000020760	LRRC3 (ENSOMEG00000020765)	ENSOMEG00000020811	ENSOMEG00000020831	gpd2 (ENSOMEG00000020845)	NR4A2 (ENSOMEG00000020865)	TUBA4A (ENSOMEG00000020878)	ENSOMEG00000020950
Oryzias_a	ANCESTRAL SPECIES	56	ENSGT00940000160639.a	ENSGT00950000183114.a.b.b	ENSGT00390000012561.b.pb.b	ENSGT00940000167103	ENSGT00940000158539.b	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233.c	ENSGT01040000240400.c.a.b.b	ENSGT01100000264591	ENSGT00950000183208.A.c.a	ENSGT00950000183184.a.a.b	ENSGT00940000165235.a.a	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Chinese medaka	MODERN SPECIES	357												ENSOSIG00000023680	ENSOSIG00000023682	ENSOSIG00000023688	pwp2h (ENSOSIG00000023690)	eed (ENSOSIG00000023692) #22	ATP7B (ENSOSIG00000023702)	LRRC3 (ENSOSIG00000023721)	ENSOSIG00000023727	gpd2 (ENSOSIG00000023732)	NR4A2 (ENSOSIG00000023733)	TUBA4A (ENSOSIG00000023736)	ENSOSIG00000023741
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000000112	KIF5C (ENSORLG00000000108)	MBD5 (ENSORLG00000000104)	orc4 (ENSORLG00000000103)	ACVR2A (ENSORLG00000000099)	ENSORLG00000027108	ENSORLG00000024724	zeb2b (ENSORLG00000000098)	ENSORLG00000000095	ENSORLG00000000091	ENSORLG00000023624	ENSORLG00000000079	ENSORLG00000029677	ENSORLG00000000068	pwp2h (ENSORLG00000000066)	eed (ENSORLG00000030215) #22	ENSORLG00000000063	LRRC3 (ENSORLG00000000061)	ENSORLG00000000059	ENSORLG00000027750	gpd2 (ENSORLG00000000052)	ENSORLG00000000050	ENSORLG00000000046	ENSORLG00000000040	ENSORLG00000027764	ENSORLG00000000211	ENSORLG00000026826	ENSORLG00000022471	ENSORLG00000022036	inpp4ab (ENSORLG00000000030)	zgc:113142 (ENSORLG00000000026)
Cyprinodontiformes	ANCESTRAL SPECIES	26	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Aplocheiloidei	ANCESTRAL SPECIES	204										ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r
Mangrove rivulus	MODERN SPECIES	576										FAM171B (ENSKMAG00000003639)	zswim2 (ENSKMAG00000003610)	ENSKMAG00000003535	COL5A2 (ENSKMAG00000003302)	ENSKMAG00000003229	pwp2h (ENSKMAG00000003143)	eed (ENSKMAG00000003128) #22	ENSKMAG00000003095	LRRC3 (ENSKMAG00000003089)	ENSKMAG00000003046
Turquoise killifish	MODERN SPECIES	1619	ENSNFUG00015008412	ENSNFUG00015008729	ENSNFUG00015008757	bzw1a (ENSNFUG00015008762)	AOX1 (ENSNFUG00015008831)	ENSNFUG00015011037	ENSNFUG00015011047	zeb2b (ENSNFUG00015011080)	ENSNFUG00015011163	ENSNFUG00015011167	ACVR2A (ENSNFUG00015011205)	MBD5 (ENSNFUG00015011296)	FAM171B (ENSNFUG00015011440)	ENSNFUG00015011470	ENSNFUG00015012170	eed (ENSNFUG00015012208) #22	ENSNFUG00015012237	ENSNFUG00015012335	gpd2 (ENSNFUG00015012357)	NR4A2 (ENSNFUG00015012524)	ENSNFUG00015012691	znf16l (ENSNFUG00015012724)	ache (ENSNFUG00015012736)	BX005022.1 (ENSNFUG00015012742)	cd248a (ENSNFUG00015012749)	RCE1A (ENSNFUG00015012764)	ALOX12 (ENSNFUG00015012795)	senp3b (ENSNFUG00015013061)	EIF4A1 (ENSNFUG00015004769)	MED11 (ENSNFUG00015005054)	ENSNFUG00015005064
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Poecilia	ANCESTRAL SPECIES	45	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
NAME_6	ANCESTRAL SPECIES	239	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Amazon molly	MODERN SPECIES	309	OSBPL11 (ENSPFOG00000013280)	gpd1c (ENSPFOG00000013450)	NCKAP5 (ENSPFOG00000013527)	LYPD1 (ENSPFOG00000013617)	actr3 (ENSPFOG00000013626)	ENSPFOG00000013697	pou3f3b (ENSPFOG00000013701)	mrps9 (ENSPFOG00000013721)	ENSPFOG00000013825	FAM171B (ENSPFOG00000013868)	ENSPFOG00000021831	ENSPFOG00000013924	COL5A2 (ENSPFOG00000014044)	ENSPFOG00000014758	pwp2h (ENSPFOG00000014764)	eed (ENSPFOG00000014791) #22	ATP7B (ENSPFOG00000014876)	LRRC3 (ENSPFOG00000020176)	ENSPFOG00000015051	ENSPFOG00000015163
Sailfin molly	MODERN SPECIES	1391												ENSPLAG00000011790	ENSPLAG00000011688	ENSPLAG00000011604	pwp2h (ENSPLAG00000011559)	eed (ENSPLAG00000011512) #22	ATP7B (ENSPLAG00000011499)	LRRC3 (ENSPLAG00000011458)	ENSPLAG00000011449	ENSPLAG00000011407
Guppy	MODERN SPECIES	450	gpd1c (ENSPREG00000016404)	NCKAP5 (ENSPREG00000016365)	LYPD1 (ENSPREG00000016343)	ENSPREG00000016318	ENSPREG00000016302	pou3f3b (ENSPREG00000016284)	mrps9 (ENSPREG00000016254)	ENSPREG00000016230	FAM171B (ENSPREG00000016216)	zswim2 (ENSPREG00000016206)	ENSPREG00000016193	ENSPREG00000016172	COL5A2 (ENSPREG00000015993)	ENSPREG00000015932	pwp2h (ENSPREG00000015887)	eed (ENSPREG00000015809) #22	ATP7B (ENSPREG00000015767)	LRRC3 (ENSPREG00000015757)	ENSPREG00000015736	ENSPREG00000015714	gpd2 (ENSPREG00000015690)	NR4A2 (ENSPREG00000015677)	ENSPREG00000015663	ENSPREG00000015607	ENSPREG00000015476	inpp4ab (ENSPREG00000015264)	ALS2 (ENSPREG00000015098)	MPP4 (ENSPREG00000015049)	tmem237b (ENSPREG00000015009)	cyp20a1 (ENSPREG00000014976)	abi2b (ENSPREG00000014947)
Platyfish	MODERN SPECIES	16	gpd1c (ENSXMAG00000007949)	NCKAP5 (ENSXMAG00000003034)	LYPD1 (ENSXMAG00000007958)	ACTR3 (ENSXMAG00000007959)	ENSXMAG00000026038	ENSXMAG00000022133	pou3f3b (ENSXMAG00000021922)	mrps9 (ENSXMAG00000007974)	ENSXMAG00000007979	ENSXMAG00000022497	zswim2 (ENSXMAG00000024598)	ENSXMAG00000007989	ENSXMAG00000007999	ENSXMAG00000008123	pwp2h (ENSXMAG00000008124)	eed (ENSXMAG00000008149) #22	ATP7B (ENSXMAG00000008157)	LRRC3 (ENSXMAG00000019730)	ENSXMAG00000008175	ENSXMAG00000029591	gpd2 (ENSXMAG00000008190)	NR4A2 (ENSXMAG00000008198)	TUBA4A (ENSXMAG00000026340)	ENSXMAG00000008207	inpp4ab (ENSXMAG00000008270)	ALS2 (ENSXMAG00000008272)	MPP4 (ENSXMAG00000008285)	tmem237b (ENSXMAG00000008299)	cyp20a1 (ENSXMAG00000008300)	abi2b (ENSXMAG00000008309)	DMD (ENSXMAG00000008318)
NAME_4	ANCESTRAL SPECIES	90	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a
Mummichog	MODERN SPECIES	2385																eed (ENSFHEG00000016575) #22	ATP7B (ENSFHEG00000016584)	LRRC3 (ENSFHEG00000000887)	ENSFHEG00000016615	ENSFHEG00000016665	gpd2 (ENSFHEG00000016695)	NR4A2 (ENSFHEG00000016790)	ENSFHEG00000016803	ENSFHEG00000017707	ENSFHEG00000017960	inpp4ab (ENSFHEG00000018010)	ALS2 (ENSFHEG00000018208)	MPP4 (ENSFHEG00000018412)	tmem237b (ENSFHEG00000018428)	cyp20a1 (ENSFHEG00000018443)	abi2b (ENSFHEG00000018481)
Sheepshead minnow	MODERN SPECIES	265					LYPD1 (ENSCVAG00000000808)	ACTR3 (ENSCVAG00000000211)	pou3f3b (ENSCVAG00000007726)	mrps9 (ENSCVAG00000007791)	ENSCVAG00000007816	FAM171B (ENSCVAG00000007832)	zswim2 (ENSCVAG00000000212)	ENSCVAG00000008212	ENSCVAG00000014163	ENSCVAG00000014333	pwp2h (ENSCVAG00000000996)	eed (ENSCVAG00000014409) #22	ATP7B (ENSCVAG00000014446)	ENSCVAG00000014466	LRRC3 (ENSCVAG00000014472)	ENSCVAG00000014482	ENSCVAG00000014489	gpd2 (ENSCVAG00000014507)	NR4A2 (ENSCVAG00000014515)	ENSCVAG00000014521	ENSCVAG00000014674	ENSCVAG00000014684	inpp4ab (ENSCVAG00000014936)	ENSCVAG00000014968	MPP4 (ENSCVAG00000015060)	ENSCVAG00000015075	tmem237b (ENSCVAG00000015114)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00390000009940	ENSGT00940000164444.b	ENSGT00950000182882.A.b.b.f	ENSGT00950000183165.b.a.e.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00940000154095.b.b.a.a	ENSGT00390000003164
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00390000009940	ENSGT00940000164444.b	ENSGT00950000182882.A.b.b.f	ENSGT00950000183165.b.a.e.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00940000154095.b.b.a.a	ENSGT00390000003164
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00390000009940	ENSGT00940000164444.b	ENSGT00950000182882.A.b.b.f	ENSGT00390000015484.i.f	ENSGT00950000183165.b.a.e.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00940000154095.b.b.a.a
Haplochromini	ANCESTRAL SPECIES	41	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d
Haplochromini_A	ANCESTRAL SPECIES	76	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d
Haplochromini_B	ANCESTRAL SPECIES	91	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d
Zebra mbuna	MODERN SPECIES	1105	gpd1c (ENSMZEG00005015157)	NCKAP5 (ENSMZEG00005015180)	LYPD1 (ENSMZEG00005015213)	ACTR3 (ENSMZEG00005015223)	ENSMZEG00005015233	ENSMZEG00005015241	pou3f3b (ENSMZEG00005015253)	mrps9 (ENSMZEG00005015264)	SLAIN1 (ENSMZEG00005015282)	ENSMZEG00005015297	inpp4ab (ENSMZEG00005015313)	ENSMZEG00005015345	ENSMZEG00005015382	ENSMZEG00005015426	pwp2h (ENSMZEG00005015448)	eed (ENSMZEG00005015490) #22	ENSMZEG00005015497	gpd2 (ENSMZEG00005015505)	nr4a2b (ENSMZEG00005015529)	ENSMZEG00005015539	ENSMZEG00005015580	mfsd6a (ENSMZEG00005015608)	ENSMZEG00005015623	ahr1b (ENSMZEG00005015628)	ENSMZEG00005015646	ENSMZEG00005015665	ENSMZEG00005015678	s100b (ENSMZEG00005015684)	sh3bp4a (ENSMZEG00005015690)	ENSMZEG00005015698	AOX1 (ENSMZEG00005015711)
Eastern happy	MODERN SPECIES	14	NCKAP5 (ENSACLG00000010348)	LYPD1 (ENSACLG00000010372)	actr3 (ENSACLG00000010384)	ENSACLG00000010396	ENSACLG00000010404	pou3f3b (ENSACLG00000010758)	ENSACLG00000010806	mrps9 (ENSACLG00000010815)	SLAIN1 (ENSACLG00000010893)	ENSACLG00000010924	inpp4ab (ENSACLG00000010937)	ENSACLG00000010997	ENSACLG00000011037	ENSACLG00000011140	pwp2h (ENSACLG00000011425)	eed (ENSACLG00000011473) #22	ATP7B (ENSACLG00000011489)	ENSACLG00000011525	ENSACLG00000011541	ENSACLG00000011549	ENSACLG00000011572	ENSACLG00000011578	zgc:172131 (ENSACLG00000011585)	ENSACLG00000011599	ENSACLG00000011611	LRRC3 (ENSACLG00000011634)	ENSACLG00000011835	ENSACLG00000011842	ENSACLG00000011875	gpd2 (ENSACLG00000011889)	nr4a2b (ENSACLG00000011957)
P. nyererei	MODERN SPECIES	413	gpd1c (ENSPNYG00000008925)	NCKAP5 (ENSPNYG00000008855)	LYPD1 (ENSPNYG00000008826)	actr3 (ENSPNYG00000008790)	ENSPNYG00000008774	ENSPNYG00000008750	pou3f3b (ENSPNYG00000008739)	mrps9 (ENSPNYG00000008697)	ENSPNYG00000008662	ENSPNYG00000008633	INPP4A (ENSPNYG00000008561)	ENSPNYG00000008513	ENSPNYG00000008421	ENSPNYG00000008393	pwp2h (ENSPNYG00000008379)	eed (ENSPNYG00000008359) #22
Burton s mouthbrooder	MODERN SPECIES	304	NCKAP5 (ENSHBUG00000004916)	LYPD1 (ENSHBUG00000004940)	actr3 (ENSHBUG00000004956)	ENSHBUG00000004970	ENSHBUG00000005011	pou3f3b (ENSHBUG00000000126)	mrps9 (ENSHBUG00000005067)	SLAIN1 (ENSHBUG00000005081)	FAM171B (ENSHBUG00000005092)	INPP4A (ENSHBUG00000005299)	ENSHBUG00000005353	ENSHBUG00000005415	ENSHBUG00000005434	ENSHBUG00000005457	pwp2h (ENSHBUG00000005530)	eed (ENSHBUG00000005542) #22	ENSHBUG00000005560	WDR49 (ENSHBUG00000005604)	pdcd10a (ENSHBUG00000005860)	serpini1 (ENSHBUG00000005921)	ENSHBUG00000005934	ENSHBUG00000005939	ENSHBUG00000005954	PTX3 (ENSHBUG00000005964)	veph1 (ENSHBUG00000005977)	ccnl1a (ENSHBUG00000006011)	ENSHBUG00000006024	TIPARP (ENSHBUG00000001162)	ssr3 (ENSHBUG00000006051)	kcnab1a (ENSHBUG00000006103)	ENSHBUG00000006145
Lyretail cichlid	MODERN SPECIES	315	gpd1c (ENSNBRG00000016963)	NCKAP5 (ENSNBRG00000016948)	LYPD1 (ENSNBRG00000016930)	actr3 (ENSNBRG00000016906)	ENSNBRG00000016892	pou3f3b (ENSNBRG00000016867)	mrps9 (ENSNBRG00000016845)	SLAIN1 (ENSNBRG00000016815)	ENSNBRG00000016769	INPP4A (ENSNBRG00000016726)	ENSNBRG00000016687	ENSNBRG00000016673	ENSNBRG00000016650	ENSNBRG00000016629	pwp2h (ENSNBRG00000016527)	eed (ENSNBRG00000016506) #22	ATP7B (ENSNBRG00000016446)	ENSNBRG00000016409	ENSNBRG00000016366	gpd2 (ENSNBRG00000016315)	nr4a2b (ENSNBRG00000016182)	ENSNBRG00000016160	ENSNBRG00000016116	nhej1 (ENSNBRG00000016100)	ihhb (ENSNBRG00000016088)	bin1b (ENSNBRG00000016065)	si:ch211-114n24.6 (ENSNBRG00000016028)	ENSNBRG00000016002	PTPRN (ENSNBRG00000015952)	dnpep (ENSNBRG00000015753)	desmb (ENSNBRG00000015713)
Nile tilapia	MODERN SPECIES	14	OSBPL11 (ENSONIG00000013436)	NCKAP5 (ENSONIG00000013447)	gpd1c (ENSONIG00000013442)	LYPD1 (ENSONIG00000042130)	actr3 (ENSONIG00000013451)	ENSONIG00000040824	pou3f3b (ENSONIG00000033851)	mrps9 (ENSONIG00000013457)	SLAIN1 (ENSONIG00000013458)	ENSONIG00000013460	inpp4ab (ENSONIG00000007183)	ENSONIG00000007178	ENSONIG00000007142	ENSONIG00000007140	pwp2h (ENSONIG00000007136)	eed (ENSONIG00000007134) #22	ATP7B (ENSONIG00000012121)	LRRC3 (ENSONIG00000021036)	ENSONIG00000012122	ENSONIG00000041348	gpd2 (ENSONIG00000012127)	NR4A2 (ENSONIG00000012131)	ENSONIG00000038870	ENSONIG00000012140	nhej1 (ENSONIG00000012157)	ihhb (ENSONIG00000033552)	bin1b (ENSONIG00000012159)	LECT2 (ENSONIG00000036359)	si:ch211-114n24.6 (ENSONIG00000037168)	dnpep (ENSONIG00000012175)	desmb (ENSONIG00000012177)
Midas cichlid	MODERN SPECIES	1022	gpd1c (ENSACIG00000024080)	NCKAP5 (ENSACIG00000024082)	LYPD1 (ENSACIG00000024083)	actr3 (ENSACIG00000024085)	ENSACIG00000024086	pou3f3b (ENSACIG00000024088)	mrps9 (ENSACIG00000024089)	ENSACIG00000024092	ENSACIG00000024094	inpp4ab (ENSACIG00000024097)	ENSACIG00000024101	ENSACIG00000024104	ENSACIG00000024105	ENSACIG00000024107	pwp2h (ENSACIG00000024109)	eed (ENSACIG00000024110) #22	ENSACIG00000024113
Pomacentridae	ANCESTRAL SPECIES	200									ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Bicolor damselfish	MODERN SPECIES	1128									SLAIN1 (ENSSPAG00000023388)	FAM171B (ENSSPAG00000023385)	zswim2 (ENSSPAG00000023383)	ENSSPAG00000023380	ENSSPAG00000023376	ENSSPAG00000023373	pwp2h (ENSSPAG00000023368)	eed (ENSSPAG00000023363) #22	ATP7B (ENSSPAG00000023357)	LRRC3 (ENSSPAG00000023355)	ENSSPAG00000023341	ENSSPAG00000023327
Pomacentridae_A	ANCESTRAL SPECIES	253														ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Amphiprion	ANCESTRAL SPECIES	126	ENSGT00390000008490	ENSGT00940000156564.b	ENSGT00530000068760	ENSGT00940000157507	ENSGT00940000155050.b	ENSGT00940000158737.h	ENSGT01030000234579.C.n	ENSGT00390000017193	ENSGT00950000183022.a.b	ENSGT00390000010308	ENSGT00390000006347.b	ENSGT00390000009987	ENSGT00940000165508	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00390000017860.a.b.f	ENSGT00940000155009.b	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000008701	ankrd10a (ENSAPEG00000008689)	ENSAPEG00000008675	ddx4 (ENSAPEG00000008490)	UBE3A (ENSAPEG00000008455)	CNGA3 (ENSAPEG00000008425)	atp1b1b (ENSAPEG00000008396)	DDRGK1 (ENSAPEG00000008381)	SLC19A2 (ENSAPEG00000008374)	atg3 (ENSAPEG00000008361)	ENSAPEG00000008343	ENSAPEG00000008318	ENSAPEG00000008265	ENSAPEG00000008229	pwp2h (ENSAPEG00000008152)	eed (ENSAPEG00000008130) #22	ATP7B (ENSAPEG00000008040)	LRRC3 (ENSAPEG00000008027)	ENSAPEG00000008011	ENSAPEG00000007995	ENSAPEG00000007959	ENSAPEG00000007932	FAM171B (ENSAPEG00000007899)	slain1b (ENSAPEG00000007892)	dynlt3 (ENSAPEG00000007870)	cybb (ENSAPEG00000007823)	ENSAPEG00000007776	dusp27 (ENSAPEG00000007759)	ENSAPEG00000007740	ENSAPEG00000007724	plaat1l (ENSAPEG00000007696)
Clown anemonefish	MODERN SPECIES	810					UBE3A (ENSAOCG00000000965)	CNGA3 (ENSAOCG00000014603)	atp1b1b (ENSAOCG00000014615)	DDRGK1 (ENSAOCG00000014632)	SLC19A2 (ENSAOCG00000014642)	atg3 (ENSAOCG00000014661)	ENSAOCG00000014696	ENSAOCG00000014713	ENSAOCG00000014763	ENSAOCG00000014780	pwp2h (ENSAOCG00000014853)	eed (ENSAOCG00000014876) #22	ATP7B (ENSAOCG00000001045)
Spiny chromis	MODERN SPECIES	1243		ENSAPOG00000020859	ENSAPOG00000020878	ENSAPOG00000020920	ENSAPOG00000020945	ENSAPOG00000021034	atg3 (ENSAPOG00000021088)	SLC19A2 (ENSAPOG00000021104)	DDRGK1 (ENSAPOG00000021115)	atp1b1b (ENSAPOG00000021147)	CNGA3 (ENSAPOG00000021215)	UBE3A (ENSAPOG00000021260)	ddx4 (ENSAPOG00000021394)	ENSAPOG00000021434	pwp2h (ENSAPOG00000021522)	eed (ENSAPOG00000021554) #22	ATP7B (ENSAPOG00000021619)
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Tetraodontidae	ANCESTRAL SPECIES	26			ENSGT00940000155515.a.a	ENSGT00390000014995	ENSGT00390000003896	ENSGT00950000182910.a.a.d	ENSGT00940000166383	ENSGT00950000183014.f.a	ENSGT00940000162403	ENSGT00730000111696.a	ENSGT00950000183138.a.b.r.a	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183165.a.a.a	ENSGT00950000183165.b.b.b.b	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158239.a.b	ENSGT00940000159606	ENSGT00940000164897.a.b	ENSGT00390000007225	ENSGT00390000003114.e.b.a	ENSGT00390000002215.i.b	ENSGT00940000164385.a.a.a.b
Tetraodon	MODERN SPECIES	18				cd59 (ENSTNIG00000010603)	eef1b2 (ENSTNIG00000010604)	arl11 (ENSTNIG00000010605)	vps16 (ENSTNIG00000010606)	RGN (ENSTNIG00000010607)	ENSTNIG00000019444	ENSTNIG00000010608	mlpha (ENSTNIG00000010609)	ENSTNIG00000010610	ENSTNIG00000010611	ENSTNIG00000010612	pwp2h (ENSTNIG00000010613)	eed (ENSTNIG00000001661) #22	ATP7B (ENSTNIG00000010614)	ENSTNIG00000010615	ENSTNIG00000010616	gpd2 (ENSTNIG00000010617)	TUBA4A (ENSTNIG00000010618)	TUBA4A (ENSTNIG00000010619)	inpp4ab (ENSTNIG00000010620)	zgc:113142 (ENSTNIG00000010621)	fzd7a (ENSTNIG00000010622)	cdk15 (ENSTNIG00000010623)	ENSTNIG00000000037	gpd1c (ENSTNIG00000010624)	LYPD1 (ENSTNIG00000010625)	pou3f3b (ENSTNIG00000003464)	mrps9 (ENSTNIG00000003463)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Ballan wrasse	MODERN SPECIES	65	gpd1c (ENSLBEG00000007203)	NCKAP5 (ENSLBEG00000007143)	LYPD1 (ENSLBEG00000007128)	actr3 (ENSLBEG00000007072)	ENSLBEG00000007033	pou3f3b (ENSLBEG00000007009)	ENSLBEG00000006977	mrps9 (ENSLBEG00000006954)	SLAIN1 (ENSLBEG00000006927)	FAM171B (ENSLBEG00000006878)	zswim2 (ENSLBEG00000006844)	ENSLBEG00000006775	ENSLBEG00000006549	ENSLBEG00000006488	pwp2h (ENSLBEG00000006388)	eed (ENSLBEG00000006356) #22	ATP7B (ENSLBEG00000006266)	LRRC3 (ENSLBEG00000006245)	ENSLBEG00000006201	ENSLBEG00000006143	gpd2 (ENSLBEG00000006019)	nr4a2b (ENSLBEG00000005973)	ENSLBEG00000005944	ENSLBEG00000005866	ENSLBEG00000005825	ENSLBEG00000005806	ENSLBEG00000005744	abi2b (ENSLBEG00000005666)	cyp20a1 (ENSLBEG00000005612)	tmem237b (ENSLBEG00000005555)	MPP4 (ENSLBEG00000005345)
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Perciformes	ANCESTRAL SPECIES	27	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Perciformes_a	ANCESTRAL SPECIES	29	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Channel bull blenny	MODERN SPECIES	11	gpd1c (ENSCGOG00000012810)	NCKAP5 (ENSCGOG00000013216)	LYPD1 (ENSCGOG00000013222)	actr3 (ENSCGOG00000013242)	ENSCGOG00000013928	pou3f3b (ENSCGOG00000013930)	mrps9 (ENSCGOG00000013936)	ENSCGOG00000014061	n6amt1 (ENSCGOG00000014068)	FAM171B (ENSCGOG00000014069)	zswim2 (ENSCGOG00000014072)	ENSCGOG00000014080	ENSCGOG00000014139	ENSCGOG00000014216	pwp2h (ENSCGOG00000014224)	eed (ENSCGOG00000014468) #22	ATP7B (ENSCGOG00000014706)	LRRC3 (ENSCGOG00000016789)	PCBP3 (ENSCGOG00000016792)	ENSCGOG00000016794	gpd2 (ENSCGOG00000016825)	nr4a2b (ENSCGOG00000017337)	ENSCGOG00000017339	ENSCGOG00000017369	ENSCGOG00000018232	inpp4ab (ENSCGOG00000018278)	zgc:113142 (ENSCGOG00000019818)	CHRNA2 (ENSCGOG00000019821)	ALS2 (ENSCGOG00000019865)	MPP4 (ENSCGOG00000019924)	tmem237b (ENSCGOG00000019929)
Cottioidei	ANCESTRAL SPECIES	48	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b	ENSGT00940000155065.xb.a	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000163454.a.a.a.b.b	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Stickleback	MODERN SPECIES	530							actr3 (ENSGACG00000014876)	ENSGACG00000014894	NCKAP5 (ENSGACG00000014896)	gpd1c (ENSGACG00000014899)	OSBPL11 (ENSGACG00000014904)	ENSGACG00000014913	ENSGACG00000014916	ENSGACG00000014923	pwp2h (ENSGACG00000014928)	eed (ENSGACG00000014939) #22	ATP7B (ENSGACG00000014945)	LRRC3 (ENSGACG00000014953)	ENSGACG00000014955	ENSGACG00000014958	gpd2 (ENSGACG00000014962)	TUBA4A (ENSGACG00000014965)	ENSGACG00000014974	ENSGACG00000014984	ENSGACG00000014986	inpp4ab (ENSGACG00000014988)	zgc:113142 (ENSGACG00000014992)	CHRNA2 (ENSGACG00000014995)	ALS2 (ENSGACG00000014998)	MPP4 (ENSGACG00000015002)	tmem237b (ENSGACG00000015016)
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d.cb	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d.cb	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b
Large yellow croaker	MODERN SPECIES	486	ENSLCRG00005017145	KIF5C (ENSLCRG00005019928)	MBD5 (ENSLCRG00005020022)	orc4 (ENSLCRG00005020026)	ACVR2A (ENSLCRG00005020035)	zeb2b (ENSLCRG00005020091)	ENSLCRG00005020092	KYNU (ENSLCRG00005020095)	ENSLCRG00005020117	bzw1a (ENSLCRG00005020120)	ENSLCRG00005020126	AOX1 (ENSLCRG00005020138)	ENSLCRG00005020635	ENSLCRG00005020643	pwp2h (ENSLCRG00005020649)	eed (ENSLCRG00005020653) #22	ATP7B (ENSLCRG00005020672)	ENSLCRG00005021202	ENSLCRG00005021205	ENSLCRG00005021230	gpd2 (ENSLCRG00005021231)	nr4a2b (ENSLCRG00005021475)	ENSLCRG00005021477	ENSLCRG00005021485	SLC9A2 (ENSLCRG00005021508)	inpp4ab (ENSLCRG00005021544)	zgc:113142 (ENSLCRG00005022456)	CHRNA2 (ENSLCRG00005022458)	ENSLCRG00005022467	ENSLCRG00005022468	ENSLCRG00005022470
European seabass	MODERN SPECIES	15	ENSDLAG00005026230	ENSDLAG00005026223	ENSDLAG00005027126	ENSDLAG00005026218	ENSDLAG00005026217	ENSDLAG00005026212	ENSDLAG00005026210	ENSDLAG00005028117	ENSDLAG00005031664	ENSDLAG00005033457	ENSDLAG00005026194	ENSDLAG00005026180	ENSDLAG00005032136	ENSDLAG00005026175	ENSDLAG00005026165	ENSDLAG00005026359 #22	ENSDLAG00005026064	ENSDLAG00005028144	ENSDLAG00005026006	ENSDLAG00005026002	ENSDLAG00005025994	ENSDLAG00005025989	ENSDLAG00005025985	ENSDLAG00005025884	ENSDLAG00005025813	ENSDLAG00005025783	ENSDLAG00005025771	ENSDLAG00005025769	ENSDLAG00005025101	ENSDLAG00005009168	ENSDLAG00005034195
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Anabantaria	ANCESTRAL SPECIES	32	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939
Anabantoidei	ANCESTRAL SPECIES	28	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Siamese fighting fish	MODERN SPECIES	10	gpd2 (ENSBSLG00000001802)	OSBPL11 (ENSBSLG00000001729)	gpd1c (ENSBSLG00000001710)	NCKAP5 (ENSBSLG00000001671)	LYPD1 (ENSBSLG00000001663)	actr3 (ENSBSLG00000001636)	pou3f3b (ENSBSLG00000001618)	mrps9 (ENSBSLG00000001466)	ENSBSLG00000001411	FAM171B (ENSBSLG00000001401)	ENSBSLG00000001392	ENSBSLG00000001375	ENSBSLG00000001320	ENSBSLG00000001294	pwp2h (ENSBSLG00000001247)	eed (ENSBSLG00000000888) #22	ATP7B (ENSBSLG00000000664)	ENSBSLG00000000540	LRRC3 (ENSBSLG00000000527)	ENSBSLG00000000465	ENSBSLG00000000444	ENSBSLG00000000394	acadl (ENSBSLG00000000333)	ENSBSLG00000000302
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Carangaria_A	ANCESTRAL SPECIES	38	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00390000017581.b.b	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000163454.a.a.a.b.b	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Seriola	ANCESTRAL SPECIES	47	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00940000164908	ENSGT00940000158299.b	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j
Greater amberjack	MODERN SPECIES	7	gpd1c (ENSSDUG00000011096)	NCKAP5 (ENSSDUG00000011127)	LYPD1 (ENSSDUG00000011164)	actr3 (ENSSDUG00000011172)	ENSSDUG00000011199	pou3f3b (ENSSDUG00000011212)	mrps9 (ENSSDUG00000011236)	SLAIN1 (ENSSDUG00000011268)	zswim2 (ENSSDUG00000011305)	FAM171B (ENSSDUG00000011334)	ENSSDUG00000011349	ENSSDUG00000011373	ENSSDUG00000011421	ENSSDUG00000011435	pwp2h (ENSSDUG00000011462)	eed (ENSSDUG00000011532) #22	ATP7B (ENSSDUG00000011556)	LRRC3 (ENSSDUG00000011592)	ENSSDUG00000011608	ENSSDUG00000011623	gpd2 (ENSSDUG00000011657)	nr4a2b (ENSSDUG00000011809)	TUBA4A (ENSSDUG00000012063)	ENSSDUG00000012079	ENSSDUG00000012129	inpp4ab (ENSSDUG00000012280)	zgc:113142 (ENSSDUG00000012326)	CHRNA2 (ENSSDUG00000012342)	ALS2 (ENSSDUG00000012481)	MPP4 (ENSSDUG00000012636)	tmem237b (ENSSDUG00000012718)
Yellowtail amberjack	MODERN SPECIES	3147	cyp20a1 (ENSSLDG00000010047)	abi2b (ENSSLDG00000010004)	ENSSLDG00000009979	ENSSLDG00000009703	ENSSLDG00000009626	ENSSLDG00000009607	ENSSLDG00000009473	KIF5C (ENSSLDG00000009394)	ENSSLDG00000009226	ENSSLDG00000009124	ENSSLDG00000009080	nr4a2b (ENSSLDG00000008882)	gpd2 (ENSSLDG00000008768)	ENSSLDG00000008738	pwp2h (ENSSLDG00000008651)	eed (ENSSLDG00000008607) #22	ATP7B (ENSSLDG00000008579)	LRRC3 (ENSSLDG00000008559)	ENSSLDG00000008518	ENSSLDG00000008487	ENSSLDG00000008443
Barramundi perch	MODERN SPECIES	115	pou3f3b (ENSLCAG00010009863)	ENSLCAG00010009865	ENSLCAG00010009867	actr3 (ENSLCAG00010009875)	LYPD1 (ENSLCAG00010009884)	NCKAP5 (ENSLCAG00010009890)	gpd1c (ENSLCAG00010009903)	OSBPL11 (ENSLCAG00010009913)	ENSLCAG00010009938	FAM171B (ENSLCAG00010009946)	zswim2 (ENSLCAG00010009948)	ENSLCAG00010009959	ENSLCAG00010010090	ENSLCAG00010010465	pwp2h (ENSLCAG00010010467)	eed (ENSLCAG00010010473) #22	ATP7B (ENSLCAG00010010607)	LRRC3 (ENSLCAG00010011355)	ENSLCAG00010011361	ENSLCAG00010011385	gpd2 (ENSLCAG00010011410)	NR4A2 (ENSLCAG00010011496)	TUBA4A (ENSLCAG00010011538)	ENSLCAG00010011642	ENSLCAG00010011730	inpp4ab (ENSLCAG00010011751)	zgc:113142 (ENSLCAG00010011850)	CHRNA2 (ENSLCAG00010011867)	ALS2 (ENSLCAG00010011964)	MPP4 (ENSLCAG00010012045)	tmem237b (ENSLCAG00010012060)
Pleuronectoidei	ANCESTRAL SPECIES	47	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.yb	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334 #22	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.a	ENSGT00940000154657.A.d	ENSGT00940000156807.f	ENSGT00940000155861.C.e	ENSGT00940000156444.c	ENSGT00390000005159.j	ENSGT00500000044939	ENSGT00940000156089.e.a	ENSGT00940000165423.a.b
Turbot	MODERN SPECIES		ENSSMAG00000010164	ENSSMAG00000033279	ENSSMAG00000010624	ENSSMAG00000010680	ENSSMAG00000010693	ENSSMAG00000010706	ENSSMAG00000010712	ENSSMAG00000031472	ENSSMAG00000028603	zswim2 (ENSSMAG00000011667)	ENSSMAG00000011680	ENSSMAG00000011709	ENSSMAG00000030332	ENSSMAG00000011793	ENSSMAG00000011839	ENSSMAG00000011872 #22	ENSSMAG00000011898	ENSSMAG00000011922	ENSSMAG00000011929	ENSSMAG00000029800	ENSSMAG00000011966	ENSSMAG00000022266	ENSSMAG00000012080	ENSSMAG00000012175	ENSSMAG00000012184	ENSSMAG00000012262	ENSSMAG00000022817	ENSSMAG00000023245	ENSSMAG00000012332	ENSSMAG00000012341	ENSSMAG00000012364
Tongue sole	MODERN SPECIES	5	ATP1A1 (ENSCSEG00000001076)	ENSCSEG00000001070	ENSCSEG00000001057	rpgrb (ENSCSEG00000001033)	si:ch211-114n24.6 (ENSCSEG00000001027)	bin1b (ENSCSEG00000001008)	ihhb (ENSCSEG00000000996)	ENSCSEG00000000969	COL8A1 (ENSCSEG00000000963)	FILIP1L (ENSCSEG00000000958)	ENSCSEG00000000946	ENSCSEG00000000939	ENSCSEG00000000903	ENSCSEG00000000887	pwp2h (ENSCSEG00000000861)	eed (ENSCSEG00000000854) #22	ATP7B (ENSCSEG00000000836)	ENSCSEG00000000833	ENSCSEG00000000822	ENSCSEG00000000811	pomk (ENSCSEG00000000808)	ambp (ENSCSEG00000000802)	nrarpa (ENSCSEG00000000797)	ENSCSEG00000000750	cdc37l1 (ENSCSEG00000000733)	ak3 (ENSCSEG00000000726)	rcl1 (ENSCSEG00000000712)	anxa3b (ENSCSEG00000000702)	ENSCSEG00000000671	npdc1a (ENSCSEG00000019197)	pou5f3 (ENSCSEG00000019193)
Pinecone sodierfish	MODERN SPECIES	11	SNX4 (ENSMMDG00005000443)	OSBPL11 (ENSMMDG00005000421)	gpd1c (ENSMMDG00005000403)	NCKAP5 (ENSMMDG00005000392)	LYPD1 (ENSMMDG00005000386)	actr3 (ENSMMDG00005000371)	ENSMMDG00005000359	pou3f3b (ENSMMDG00005000354)	mrps9 (ENSMMDG00005000347)	SLAIN1 (ENSMMDG00005000336)	FAM171B (ENSMMDG00005000328)	zswim2 (ENSMMDG00005000318)	ENSMMDG00005000123	ENSMMDG00005000081	pwp2h (ENSMMDG00005007880)	eed (ENSMMDG00005007873) #22	ATP7B (ENSMMDG00005007871)	LRRC3 (ENSMMDG00005007869)	ENSMMDG00005007814	ENSMMDG00005007805	gpd2 (ENSMMDG00005007801)	NR4A2 (ENSMMDG00005007659)	ENSMMDG00005007653	ENSMMDG00005007641	ENSMMDG00005007609	inpp4ab (ENSMMDG00005006689)	zgc:113142 (ENSMMDG00005006652)	chrna2a (ENSMMDG00005006649)	ENSMMDG00005006646	plaat1l (ENSMMDG00005006643)	ENSMMDG00005006641
Protacanthopterygii	ANCESTRAL SPECIES	66	ENSGT00390000006826	ENSGT00980000202691	ENSGT00940000162403	ENSGT00950000183014.f.a	ENSGT00940000153514.b.m.b	ENSGT00390000009987	ENSGT00390000012731.a.b.i	ENSGT00940000155248.vb.f	ENSGT00390000008812.a.b	ENSGT00940000155515.a.a	ENSGT00390000017916	ENSGT00390000002188	ENSGT00940000160000	ENSGT00390000018525.a.b.e.a	ENSGT00940000153695.B	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00940000155749.d	ENSGT00990000204351	ENSGT01000000214434.B.a.b	ENSGT00550000074981	ENSGT01000000221844	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.b	ENSGT00550000075037	ENSGT00940000160059.a.b.a	ENSGT00390000004553.f	ENSGT00940000155126.s.a	ENSGT00940000161508.b	ENSGT00390000003338
Salmoninae	ANCESTRAL SPECIES	57	ENSGT00940000178777	ENSGT00940000179271	ENSGT00970000193449	ENSGT00940000162403	ENSGT00950000183014.f.a	ENSGT00940000153514.b.m.b.g	ENSGT00390000009987	ENSGT00390000012731.a.b.i	ENSGT00940000155248.vb.f.a.b	ENSGT00390000008812.a.b.c.a	ENSGT00940000155515.a.a.g.b	ENSGT00390000017916	ENSGT00390000002188	ENSGT00940000160000.e	ENSGT00940000153695.B.d	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00940000155749.d	ENSGT00990000204351	ENSGT01000000214434.B.a.b.a	ENSGT00550000074981	ENSGT01000000221844	ENSGT00390000001718.b.b.a.a	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.b	ENSGT00550000075037.b	ENSGT00940000160059.a.b.a	ENSGT00390000004553.f.b.a.a	ENSGT00940000155126.s.a.k.b	ENSGT00940000161508.b.o.a	ENSGT00390000003338.z
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3953								ENSHHUG00000048701	ENSHHUG00000048692	sft2d2b (ENSHHUG00000048691)	ENSHHUG00000048690	ENSHHUG00000048688	ENSHHUG00000048687	ENSHHUG00000048684	ENSHHUG00000048683	eed (ENSHHUG00000048467) #22	hikeshi (ENSHHUG00000048460)	ATP7B (ENSHHUG00000048286)	ENSHHUG00000048284
Huchen	MODERN SPECIES	3638				ENSHHUG00000049543	ENSHHUG00000049541	cdk5r2a (ENSHHUG00000049538)	ENSHHUG00000049536	ENSHHUG00000049365	ENSHHUG00000049361	ENSHHUG00000049357	ENSHHUG00000049354	sft2d2b (ENSHHUG00000049346)	ENSHHUG00000049344	ENSHHUG00000049343	ENSHHUG00000049330	eed (ENSHHUG00000049291) #22	hikeshi (ENSHHUG00000049288)	ATP7B (ENSHHUG00000048938)	ENSHHUG00000048928	ENSHHUG00000048913	pwp2h (ENSHHUG00000048777)
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT00390000006826	ENSGT00940000162403	ENSGT00950000183014.f.a	ENSGT00940000153514.b.m.b.g	ENSGT00390000009987	ENSGT00390000012731.a.b.i	ENSGT00940000155248.vb.f.a.b	ENSGT00940000155248.vb.e	ENSGT00390000008812.a.b.c.b	ENSGT00940000155515.a.a.h.a.b	ENSGT00940000155515.a.a.h.a.a	ENSGT00390000017916	ENSGT00390000002188	ENSGT00940000160000.e	ENSGT00940000153695.B.d	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00940000155749.d	ENSGT00990000204351.b	ENSGT01000000214434.B.a.b.b	ENSGT00990000204351.a	ENSGT01000000214434.B.a.b.a	ENSGT00550000074981	ENSGT00390000001718.b.b.a.b	ENSGT01000000221844	ENSGT00390000001718.b.b.a.a	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.b	ENSGT00550000075037.b	ENSGT00940000160059.a.b.a	ENSGT00390000004553.f.b.a.a
Salmo	ANCESTRAL SPECIES	108												ENSGT00390000002188	ENSGT00940000160000.e	ENSGT00390000018525.a.b.e.a.h	ENSGT00940000153695.B.c.a	ENSGT00510000047334 #22	ENSGT00390000004056	ENSGT00940000155749.d.eb	ENSGT00990000204351.a	ENSGT01000000214434.B.a.b.a	ENSGT00550000074981	ENSGT00390000001718.b.b.a.b	ENSGT00950000183038.a.b.b.b.r.f	ENSGT00950000183165.a.a.b.e	ENSGT00550000075037.b.b	ENSGT00940000160059.a.b.a.d	ENSGT00390000004553.f.a.a	ENSGT00940000155126.s.a.k.b.b	ENSGT00940000161508.b.o.a.e	ENSGT00940000161508.b.o.b.a	ENSGT00390000003338.y
River trout	DUPLICATION
River trout	MODERN SPECIES	36	GULP1 (ENSSTUG00000023168)	ENSSTUG00000022579	zswim2 (ENSSTUG00000022558)	dytn (ENSSTUG00000022550)	eef1b2 (ENSSTUG00000022511)	ndufs1 (ENSSTUG00000022318)	arl6ip6 (ENSSTUG00000022298)	ENSSTUG00000022288	ENSSTUG00000022271	ENSSTUG00000022260	ENSSTUG00000022239	sft2d2b (ENSSTUG00000022216)	ENSSTUG00000022212	ENSSTUG00000022200	ENSSTUG00000022172	eed (ENSSTUG00000021992) #22	hikeshi (ENSSTUG00000021976)	ATP7B (ENSSTUG00000018499)	ENSSTUG00000018432	ENSSTUG00000017764	ENSSTUG00000020363	gpd2 (ENSSTUG00000019084)	nr4a2b (ENSSTUG00000018948)	tuba8l2 (ENSSTUG00000018945)	stk16 (ENSSTUG00000018934)	mnx2b (ENSSTUG00000018928)	atic (ENSSTUG00000018666)	fn1b (ENSSTUG00000011785)	cpo (ENSSTUG00000011526)	cpo (ENSSTUG00000011487)	nudt15 (ENSSTUG00000011453)
River trout	MODERN SPECIES	32	ENSSTUG00000039539	ndufs1 (ENSSTUG00000039871)	eef1b2 (ENSSTUG00000039946)	arl6ip6 (ENSSTUG00000040033)	ENSSTUG00000040037	ENSSTUG00000040050	ENSSTUG00000040095	ENSSTUG00000040098	ENSSTUG00000040103	ENSSTUG00000040125	ENSSTUG00000040133	sft2d2b (ENSSTUG00000040141)	ENSSTUG00000040145	ENSSTUG00000040149	ENSSTUG00000040166	eed (ENSSTUG00000040198) #22	hikeshi (ENSSTUG00000040334)	ATP7B (ENSSTUG00000040444)	ENSSTUG00000045582	ENSSTUG00000045611	pwp2h (ENSSTUG00000046190)	gpd2 (ENSSTUG00000046498)	NR4A2 (ENSSTUG00000046787)	tuba8l2 (ENSSTUG00000046796)	stk16 (ENSSTUG00000046809)	mnx2b (ENSSTUG00000046816)	atic (ENSSTUG00000046839)	fn1b (ENSSTUG00000047017)	cpo (ENSSTUG00000047754)	cpo (ENSSTUG00000047773)	nudt15 (ENSSTUG00000047788)
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	7	eef1b2 (ENSSSAG00000041178)	ndufs1 (ENSSSAG00000042889)	arl6ip6 (ENSSSAG00000041213)	ENSSSAG00000041229	ENSSSAG00000113561	ENSSSAG00000017658	ENSSSAG00000118756	ENSSSAG00000092634	ENSSSAG00000101961	ENSSSAG00000054519	ENSSSAG00000109602	sft2d2b (ENSSSAG00000093441)	ENSSSAG00000033202	ENSSSAG00000046459	ENSSSAG00000046310	ENSSSAG00000046298 #22	ENSSSAG00000040247	ENSSSAG00000046633	ENSSSAG00000093775	glpk3 (ENSSSAG00000045972)	ENSSSAG00000045894	ENSSSAG00000116115	ENSSSAG00000042287	ENSSSAG00000015387	tuba8l2 (ENSSSAG00000042151)	stk16 (ENSSSAG00000042133)	ENSSSAG00000082902	atic (ENSSSAG00000054060)	fn1b (ENSSSAG00000105424)	cpo (ENSSSAG00000007265)	ENSSSAG00000007260
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000007434	zswim2 (ENSSSAG00000090849)	ENSSSAG00000042848	ENSSSAG00000042864	ENSSSAG00000041206	ENSSSAG00000099867	ENSSSAG00000109371	ENSSSAG00000098018	ENSSSAG00000089218	ENSSSAG00000044440	ENSSSAG00000006972	ENSSSAG00000082954	ENSSSAG00000106943	ENSSSAG00000121919	ENSSSAG00000099614	ENSSSAG00000114830 #22	ENSSSAG00000006987	ENSSSAG00000007072	ENSSSAG00000012823	ENSSSAG00000013302	ENSSSAG00000008545	ENSSSAG00000042186	tuba8l2 (ENSSSAG00000015785)	stk16 (ENSSSAG00000079250)	ENSSSAG00000107415	ENSSSAG00000009429	ENSSSAG00000082766	ENSSSAG00000108422	ENSSSAG00000103060	ENSSSAG00000006910	ENSSSAG00000114244
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT01060000253578	ENSGT00940000155248.vb.e	ENSGT00390000008812.a.b.c.b	ENSGT00940000155515.a.a.h.a.b	ENSGT00940000155515.a.a.h.a.a	ENSGT00390000017916	ENSGT00390000002188	ENSGT00940000160000.f	ENSGT00390000018525.a.b.e.a	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000153695.B.d	ENSGT00510000047334.x #22	ENSGT00390000004056.qb	ENSGT00510000047334.w #22	ENSGT00390000004056.pb	ENSGT00940000155749.d	ENSGT00990000204351.b	ENSGT01000000214434.B.a.b.a	ENSGT00550000074981.c	ENSGT01000000221844	ENSGT00390000001718.b.b.b	ENSGT00390000001718.b.b.a.a	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.b	ENSGT00550000075037.b	ENSGT00940000160059.a.b.a	ENSGT00390000004553.f.b.a.a	ENSGT00940000155126.s.a.k.b	ENSGT00940000161508.b.o.a
Oncorhynchus_a	ANCESTRAL SPECIES	147								ENSGT00940000155515.a.a.h.a.a	ENSGT00390000017916	ENSGT00390000002188	ENSGT00940000160000.f	ENSGT00390000018525.a.b.e.a	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000153695.B.d	ENSGT00510000047334.w #22	ENSGT00390000004056.pb	ENSGT00940000155749.d	ENSGT00990000204351.a	ENSGT01000000214434.B.a.b.a	ENSGT00550000074981.c	ENSGT00390000001718.b.b.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.b	ENSGT00550000075037.b	ENSGT00940000160059.a.b.a	ENSGT00390000004553.f.b.a.b	ENSGT00940000164719	ENSGT00390000004553.f.b.a.a	ENSGT00940000155126.s.a.k.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2992	eif2s3 (ENSOTSG00005040462)	klhl15 (ENSOTSG00005040460)	APOO (ENSOTSG00005040459)	ACOT9 (ENSOTSG00005039546)	sat1b (ENSOTSG00005039542)	ENSOTSG00005039537	ENSOTSG00005039535	ENSOTSG00005045813	ENSOTSG00005045810	ENSOTSG00005045809	ENSOTSG00005045808	ENSOTSG00005045807	sft2d2b (ENSOTSG00005045806)	ENSOTSG00005045805	ENSOTSG00005045804	eed (ENSOTSG00005045802) #22	hikeshi (ENSOTSG00005045801)	pwp2h (ENSOTSG00005045800)	ENSOTSG00005045796	ENSOTSG00005045795	ENSOTSG00005045794	ENSOTSG00005045793	hikeshi (ENSOTSG00005045792)	eed (ENSOTSG00005045791) #22	ENSOTSG00005045790	ENSOTSG00005045789	ENSOTSG00005045788	sft2d2b (ENSOTSG00005045787)	ENSOTSG00005045786	ENSOTSG00005045785	ENSOTSG00005045784
Chinook salmon	MODERN SPECIES	2992								ENSOTSG00005045783	ENSOTSG00005045784	ENSOTSG00005045785	ENSOTSG00005045786	sft2d2b (ENSOTSG00005045787)	ENSOTSG00005045788	ENSOTSG00005045789	ENSOTSG00005045790	eed (ENSOTSG00005045791) #22	hikeshi (ENSOTSG00005045792)	ENSOTSG00005045793	ENSOTSG00005045794	ENSOTSG00005045795	ENSOTSG00005045796	pwp2h (ENSOTSG00005045800)	hikeshi (ENSOTSG00005045801)	eed (ENSOTSG00005045802) #22	ENSOTSG00005045804	ENSOTSG00005045805	sft2d2b (ENSOTSG00005045806)	ENSOTSG00005045807	ENSOTSG00005045808	ENSOTSG00005045809	ENSOTSG00005045810
Coho salmon	MODERN SPECIES	34							cdk5r2a (ENSOKIG00005042176)	ENSOKIG00005042513	ENSOKIG00005046001	ENSOKIG00005046007	ENSOKIG00005046015	sft2d2b (ENSOKIG00005046022)	ENSOKIG00005046033	ENSOKIG00005046040	ENSOKIG00005046051	eed (ENSOKIG00005046074) #22	hikeshi (ENSOKIG00005046200)	ATP7B (ENSOKIG00005046428)	ENSOKIG00005048379	GK3 (ENSOKIG00005048415)	pwp2h (ENSOKIG00005048674)	ENSOKIG00005048778	NR4A2 (ENSOKIG00005049206)	tuba8l2 (ENSOKIG00005049209)	stk16 (ENSOKIG00005049212)	ENSOKIG00005049214	atic (ENSOKIG00005049252)	fn1b (ENSOKIG00005049616)	ENSOKIG00005050160	faimb (ENSOKIG00005050166)	ENSOKIG00005050176
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT00390000012731.a.b.i	ENSGT00940000155248.vb.f.a.b	ENSGT01060000253578	ENSGT00940000155248.vb.e	ENSGT00390000008812.a.b.c.b	ENSGT00940000155515.a.a.h.a.b	ENSGT00940000155515.a.a.h.a.a	ENSGT00390000017916	ENSGT00390000002188	ENSGT00940000160000.f	ENSGT00390000018525.a.b.e.a	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000153695.B.d	ENSGT00510000047334.x #22	ENSGT00390000004056.qb	ENSGT00510000047334.w #22	ENSGT00390000004056.pb	ENSGT00940000155749.d	ENSGT00990000204351.b	ENSGT01000000214434.B.a.b.a	ENSGT00550000074981.c	ENSGT01000000221844	ENSGT00390000001718.b.b.b	ENSGT00390000001718.b.b.a.a	ENSGT00950000183038.a.b.b.b.r	ENSGT00950000183165.a.a.b	ENSGT00550000075037.b	ENSGT00940000160059.a.b.a	ENSGT00390000004553.f.b.a.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000063072	ENSOMYG00000049709	ENSOMYG00000004263	ENSOMYG00000055796	ENSOMYG00000052582	ENSOMYG00000062129	ENSOMYG00000059170	ENSOMYG00000010528	ENSOMYG00000010486	ENSOMYG00000010393	ENSOMYG00000049924	sft2d2b (ENSOMYG00000056798)	ENSOMYG00000055017	ENSOMYG00000010228	ENSOMYG00000010168	ENSOMYG00000010041 #22	ck073 (ENSOMYG00000009818)	ENSOMYG00000008730	ENSOMYG00000008902	ENSOMYG00000055697	ENSOMYG00000007956	ENSOMYG00000069237	ENSOMYG00000056151	ENSOMYG00000060607	tuba8l2 (ENSOMYG00000009711)	stk16 (ENSOMYG00000009701)	ENSOMYG00000009675	atic (ENSOMYG00000008659)	ENSOMYG00000060190	ENSOMYG00000074661	fn1b (ENSOMYG00000006459)
Rainbow trout	MODERN SPECIES	9	eef1b2 (ENSOMYG00000004672)	ndufs1 (ENSOMYG00000004516)	arl6ip6 (ENSOMYG00000057345)	ENSOMYG00000004303	ENSOMYG00000066169	ENSOMYG00000076187	ENSOMYG00000010566	ENSOMYG00000010509	ENSOMYG00000057369	ENSOMYG00000067658	ENSOMYG00000056166	sft2d2b (ENSOMYG00000065190)	ENSOMYG00000013450	ENSOMYG00000013438	ENSOMYG00000013419	ENSOMYG00000076427 #22	ck073 (ENSOMYG00000061426)	ENSOMYG00000009899	ENSOMYG00000008599	ENSOMYG00000008375	ENSOMYG00000008885	ENSOMYG00000007725	ENSOMYG00000007694	tuba8l2 (ENSOMYG00000007598)	ENSOMYG00000007531	ENSOMYG00000055057	atic (ENSOMYG00000059980)	fn1b (ENSOMYG00000067929)	cpo (ENSOMYG00000004299)	ENSOMYG00000067824	ENSOMYG00000074365
Oncorhynchus_a	ANCESTRAL SPECIES	706																ENSGT00510000047334.x #22	ENSGT00390000004056.qb
Chinook salmon	MODERN SPECIES	1908																ENSOTSG00005018859 #22	ENSOTSG00005018858
Northern pike	MODERN SPECIES	21	eef1b2 (ENSELUG00000002024)	ndufs1 (ENSELUG00000002014)	ENSELUG00000002008	ENSELUG00000002006	ENSELUG00000002002	ENSELUG00000001996	cdk5r2a (ENSELUG00000001981)	ENSELUG00000001957	ENSELUG00000001926	iqcb1 (ENSELUG00000001921)	ENSELUG00000001301	sft2d2b (ENSELUG00000001914)	ENSELUG00000001903	ENSELUG00000001909	ENSELUG00000001900	eed (ENSELUG00000001896) #22	hikeshi (ENSELUG00000001892)	ATP7B (ENSELUG00000001889)	ENSELUG00000001886	ENSELUG00000001883	pwp2h (ENSELUG00000001878)	ENSELUG00000034064	gpd2 (ENSELUG00000001876)	NR4A2 (ENSELUG00000001873)	tuba8l2 (ENSELUG00000001871)	stk16 (ENSELUG00000001868)	mnx2b (ENSELUG00000001866)	atic (ENSELUG00000001864)	fn1b (ENSELUG00000001859)	cpo (ENSELUG00000000052)	cpo (ENSELUG00000001515)
Spotted gar	MODERN SPECIES	655	jagn1b (ENSLOCG00000009456)	ADGRG7 (ENSLOCG00000009466)	tfg (ENSLOCG00000009472)	abi3bpb (ENSLOCG00000009480)	IMPG2 (ENSLOCG00000009490)	senp7b (ENSLOCG00000009501)	si:ch73-41e3.7 (ENSLOCG00000009518)	txnl4b (ENSLOCG00000009526)	trmt10c (ENSLOCG00000017802)	pcnp (ENSLOCG00000009530)	ENSLOCG00000009538	rpl24 (ENSLOCG00000009548)	cep97 (ENSLOCG00000009560)	nxpe3 (ENSLOCG00000009568)	NFKBIZ (ENSLOCG00000009576)	eed (ENSLOCG00000009588) #22	hikeshi (ENSLOCG00000009599)	CCDC81 (ENSLOCG00000009607)	me3 (ENSLOCG00000009615)	PRSS23 (ENSLOCG00000017803)	tmem39a (ENSLOCG00000009633)	ildr1a (ENSLOCG00000009645)	ildr2 (ENSLOCG00000009660)	GPA33 (ENSLOCG00000009679)	ENSLOCG00000009686	dusp27 (ENSLOCG00000009695)	pou2f1b (ENSLOCG00000009711)	CD247 (ENSLOCG00000009728)	creg1 (ENSLOCG00000009735)	ENSLOCG00000017804	ENSLOCG00000009739
Reedfish	MODERN SPECIES	12	C2CD2 (ENSECRG00000002856)	atg101 (ENSECRG00000002851)	ZBTB21 (ENSECRG00000002844)	ENSECRG00000002834	ENSECRG00000002828	MAP6 (ENSECRG00000002822)	mogat2 (ENSECRG00000002814)	dgat2 (ENSECRG00000002807)	uvrag (ENSECRG00000002795)	ENSECRG00000002787	wnt11 (ENSECRG00000002768)	ENSECRG00000002752	DOCK9 (ENSECRG00000002654)	nxpe3 (ENSECRG00000002616)	NFKBIZ (ENSECRG00000002600)	eed (ENSECRG00000002586) #22	hikeshi (ENSECRG00000002579)	CCDC81 (ENSECRG00000002568)	me3 (ENSECRG00000002542)	PRSS23 (ENSECRG00000002500)	tmem39a (ENSECRG00000002466)	ildr1a (ENSECRG00000002446)	ILDR2 (ENSECRG00000002435)	ENSECRG00000002425	GPA33 (ENSECRG00000002415)	ENSECRG00000002377	dusp27 (ENSECRG00000002295)	pou2f1b (ENSECRG00000002245)	CD247 (ENSECRG00000002223)	creg1 (ENSECRG00000002206)	ENSECRG00000002191
Elephant shark	MODERN SPECIES	1489	NELL2 (ENSCMIG00000015661)	tenm4 (ENSCMIG00000015412)	ENSCMIG00000015338	prcp (ENSCMIG00000015317)	ENSCMIG00000015306	rab30 (ENSCMIG00000015297)	PCF11 (ENSCMIG00000015293)	ANKRD42 (ENSCMIG00000015276)	ccdc90b (ENSCMIG00000015262)	dlg2 (ENSCMIG00000014774)	tmem126a (ENSCMIG00000014504)	ENSCMIG00000014503	ENSCMIG00000014494	ENSCMIG00000014486	picalma (ENSCMIG00000014421)	eed (ENSCMIG00000014389) #22	hikeshi (ENSCMIG00000014377)	CCDC81 (ENSCMIG00000014361)	me3 (ENSCMIG00000014053)	fzd4 (ENSCMIG00000013939)	tmem135 (ENSCMIG00000013928)	RAB38 (ENSCMIG00000013904)	ctsc (ENSCMIG00000013900)	grm5b (ENSCMIG00000013895)	tyr (ENSCMIG00000013755)	NOX4 (ENSCMIG00000013715)	ENSCMIG00000013676	naalad2 (ENSCMIG00000013613)	chordc1a (ENSCMIG00000013595)	ENSCMIG00000013592	ENSCMIG00000013585
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00510000047334 #22
Lamprey	MODERN SPECIES	4219																eed (ENSPMAG00000001662) #22
Hagfish	MODERN SPECIES	761														ENSEBUG00000009038	ENSEBUG00000005792	eed (ENSEBUG00000014883) #22	ENSEBUG00000015175	ENSEBUG00000003362	ENSEBUG00000005210	GPR4 (ENSEBUG00000017069)	INTS5 (ENSEBUG00000008149)	ENSEBUG00000015643	EVA1A (ENSEBUG00000012949)
Ciona	ANCESTRAL SPECIES	1190															ENSGT00950000182950.A	ENSGT00510000047334 #22
Ciona savignyi	MODERN SPECIES	276	ENSCSAVG00000005564	ENSCSAVG00000005556	ENSCSAVG00000005553	ENSCSAVG00000005549	ENSCSAVG00000005547	ENSCSAVG00000005498	ENSCSAVG00000005364	ENSCSAVG00000005359	ENSCSAVG00000005260	ENSCSAVG00000005257	ENSCSAVG00000005255	ENSCSAVG00000005252	ENSCSAVG00000005199	ENSCSAVG00000005179	ENSCSAVG00000005137	ENSCSAVG00000005024 #22	ENSCSAVG00000005020	ENSCSAVG00000005015	ENSCSAVG00000005003	ENSCSAVG00000004992	ENSCSAVG00000004986	ENSCSAVG00000004769	ENSCSAVG00000004631	ENSCSAVG00000004623	ENSCSAVG00000004560	ENSCSAVG00000004554	ENSCSAVG00000004550	ENSCSAVG00000004538	ENSCSAVG00000004533	ENSCSAVG00000004517	ENSCSAVG00000004452
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000005607	ENSCING00000022698	ENSCING00000020253	ENSCING00000005608	ENSCING00000024974	ENSCING00000005611	ENSCING00000005613	ENSCING00000025144	ENSCING00000006960	ENSCING00000018447	ENSCING00000013136	ENSCING00000013137	ENSCING00000023148	ENSCING00000013134	ENSCING00000006939	ENSCING00000006948 #22	ENSCING00000023511	ENSCING00000006921	ENSCING00000006936	ENSCING00000013133	ENSCING00000022305	ENSCING00000024721	ENSCING00000018802	ENSCING00000006906	ENSCING00000021332	ENSCING00000006896	ENSCING00000023556	ENSCING00000020100	ENSCING00000013125	ENSCING00000006878	ENSCING00000006869