Mus	ANCESTRAL SPECIES	1	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Mus_A	ANCESTRAL SPECIES		ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Mus_C	ANCESTRAL SPECIES		ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Steppe mouse	MODERN SPECIES	36										Api5 (ENSMSIG00000017696) #16	Ttc17 (ENSMSIG00000017737) #17	Hsd17b12 (ENSMSIG00000017936) #18	Alkbh3 (ENSMSIG00000017952) #19	Gm13889 (ENSMSIG00000018000) #20	Accsl (ENSMSIG00000018045) #21	Ext2 (ENSMSIG00000018155) #22	Alx4 (ENSMSIG00000018194) #23	ENSMSIG00000018210 #24	ENSMSIG00000018226 #25	Cd82 (ENSMSIG00000018232) #26	Tspan18 (ENSMSIG00000018260) #27	ENSMSIG00000018279 #28	Prdm11 (ENSMSIG00000018308) #29	ENSMSIG00000018406 #30	Syt13 (ENSMSIG00000018415) #31	Chst1 (ENSMSIG00000018432) #32	ENSMSIG00000018438 #33	Slc35c1 (ENSMSIG00000018455) #34	Cry2 (ENSMSIG00000018499) #35	Mapk8ip1 (ENSMSIG00000018534) #36	Frey1 (ENSMSIG00000018641) #37
spretus	MODERN SPECIES	11	Commd9 (MGP_SPRETEiJ_G0024915)	Prr5l (MGP_SPRETEiJ_G0024914)	Traf6 (MGP_SPRETEiJ_G0024913)	Rag1 (MGP_SPRETEiJ_G0024912)	Rag2 (MGP_SPRETEiJ_G0024911)	Iftap (MGP_SPRETEiJ_G0024910)	Lrrc4c (MGP_SPRETEiJ_G0024909)	Api5 (MGP_SPRETEiJ_G0024908) #16	Ttc17 (MGP_SPRETEiJ_G0024907) #17	Hsd17b12 (MGP_SPRETEiJ_G0024906) #18	Alkbh3 (MGP_SPRETEiJ_G0024905) #19	MGP_SPRETEiJ_G0024904 ##19	Gm13889 (MGP_SPRETEiJ_G0024903) #20	Accsl (MGP_SPRETEiJ_G0024902) #21	Accs (MGP_SPRETEiJ_G0024901)	Ext2 (MGP_SPRETEiJ_G0024900) #22	Alx4 (MGP_SPRETEiJ_G0024899) #23	MGP_SPRETEiJ_G0024898 #24	Cd82 (MGP_SPRETEiJ_G0024897) #26	Tspan18 (MGP_SPRETEiJ_G0024896) #27	Trp53i11 (MGP_SPRETEiJ_G0024895) #28	MGP_SPRETEiJ_G0024894 #29	Syt13 (MGP_SPRETEiJ_G0024893) #31	Chst1 (MGP_SPRETEiJ_G0024892) #32	Slc35c1 (MGP_SPRETEiJ_G0024891) #34	Cry2 (MGP_SPRETEiJ_G0024890) #35	Mapk8ip1 (MGP_SPRETEiJ_G0024889) #36	Frey1 (MGP_SPRETEiJ_G0024888) #37	Pex16 (MGP_SPRETEiJ_G0024887)	Large2 (MGP_SPRETEiJ_G0024886)	Phf21a (MGP_SPRETEiJ_G0024885)
Mouse	MODERN SPECIES	11	Commd9 (ENSMUSG00000027163)	Prr5l (ENSMUSG00000032841)	Traf6 (ENSMUSG00000027164)	Rag1 (ENSMUSG00000061311)	Rag2 (ENSMUSG00000032864)	Iftap (ENSMUSG00000027165)	Lrrc4c (ENSMUSG00000050587)	Api5 (ENSMUSG00000027193) #16	Ttc17 (ENSMUSG00000027194) #17	Hsd17b12 (ENSMUSG00000027195) #18	Alkbh3 (ENSMUSG00000040174) #19	Gm27027 (ENSMUSG00000098004)	Gm13889 (ENSMUSG00000087006) #20	Accsl (ENSMUSG00000075023) #21	Accs (ENSMUSG00000040272)	Ext2 (ENSMUSG00000027198) #22	Alx4 (ENSMUSG00000040310) #23	Cd82 (ENSMUSG00000027215) #26	Tspan18 (ENSMUSG00000027217) #27	Trp53i11 (ENSMUSG00000068735) #28	Prdm11 (ENSMUSG00000075028) #29	Syt13 (ENSMUSG00000027220) #31	Chst1 (ENSMUSG00000027221) #32	Slc35c1 (ENSMUSG00000049922) #34	Cry2 (ENSMUSG00000068742) #35	Mapk8ip1 (ENSMUSG00000027223) #36	Frey1 (ENSMUSG00000044916) #37	Pex16 (ENSMUSG00000027222)	Large2 (ENSMUSG00000040434)	Phf21a (ENSMUSG00000058318)	Creb3l1 (ENSMUSG00000027230)
Ryukyu mouse	MODERN SPECIES	11	Commd9 (MGP_CAROLIEiJ_G0024005)	Prr5l (MGP_CAROLIEiJ_G0024004)	Traf6 (MGP_CAROLIEiJ_G0024003)	Rag1 (MGP_CAROLIEiJ_G0024002)	Rag2 (MGP_CAROLIEiJ_G0024001)	Iftap (MGP_CAROLIEiJ_G0024000)	Lrrc4c (MGP_CAROLIEiJ_G0023999)	Api5 (MGP_CAROLIEiJ_G0023998) #16	Ttc17 (MGP_CAROLIEiJ_G0023997) #17	MGP_CAROLIEiJ_G0023996 #18	Alkbh3 (MGP_CAROLIEiJ_G0023995) #19	MGP_CAROLIEiJ_G0023994 ##19	Gm13889 (MGP_CAROLIEiJ_G0023993) #20	MGP_CAROLIEiJ_G0023992 #21	Accs (MGP_CAROLIEiJ_G0023991)	Ext2 (MGP_CAROLIEiJ_G0023990) #22	Alx4 (MGP_CAROLIEiJ_G0023989) #23	MGP_CAROLIEiJ_G0023988 #24	Cd82 (MGP_CAROLIEiJ_G0023987) #26	Tspan18 (MGP_CAROLIEiJ_G0023986) #27	MGP_CAROLIEiJ_G0023985 #28	MGP_CAROLIEiJ_G0023984 #29	Syt13 (MGP_CAROLIEiJ_G0023983) #31	Chst1 (MGP_CAROLIEiJ_G0023982) #32	Slc35c1 (MGP_CAROLIEiJ_G0023981) #34	Cry2 (MGP_CAROLIEiJ_G0023980) #35	Mapk8ip1 (MGP_CAROLIEiJ_G0023979) #36	Frey1 (MGP_CAROLIEiJ_G0023978) #37	Pex16 (MGP_CAROLIEiJ_G0023977)	Large2 (MGP_CAROLIEiJ_G0023976)	Phf21a (MGP_CAROLIEiJ_G0023975)
Shrew mouse	MODERN SPECIES	16	Commd9 (MGP_PahariEiJ_G0025441)	Prr5l (MGP_PahariEiJ_G0025440)	Traf6 (MGP_PahariEiJ_G0025439)	Rag1 (MGP_PahariEiJ_G0025438)	Rag2 (MGP_PahariEiJ_G0025437)	MGP_PahariEiJ_G0025436	Lrrc4c (MGP_PahariEiJ_G0025435)	Api5 (MGP_PahariEiJ_G0025434) #16	Ttc17 (MGP_PahariEiJ_G0025433) #17	Hsd17b12 (MGP_PahariEiJ_G0025432) #18	Alkbh3 (MGP_PahariEiJ_G0025431) #19	MGP_PahariEiJ_G0025430 ##19	Gm13889 (MGP_PahariEiJ_G0025429) #20	Accsl (MGP_PahariEiJ_G0025428) #21	Accs (MGP_PahariEiJ_G0025427)	Ext2 (MGP_PahariEiJ_G0025426) #22	Alx4 (MGP_PahariEiJ_G0025425) #23	MGP_PahariEiJ_G0025424 #24	Cd82 (MGP_PahariEiJ_G0025423) #26	Tspan18 (MGP_PahariEiJ_G0025422) #27	Trp53i11 (MGP_PahariEiJ_G0025421) #28	MGP_PahariEiJ_G0025420 #29	Syt13 (MGP_PahariEiJ_G0025419) #31	Chst1 (MGP_PahariEiJ_G0025418) #32	Cry2 (MGP_PahariEiJ_G0025417) #35	Mapk8ip1 (MGP_PahariEiJ_G0025416) #36	Frey1 (MGP_PahariEiJ_G0025415) #37	Pex16 (MGP_PahariEiJ_G0025414)	Large2 (MGP_PahariEiJ_G0025413)	Phf21a (MGP_PahariEiJ_G0025412)	Creb3l1 (MGP_PahariEiJ_G0025411)