Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT01100000264486
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT01100000264486
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Mus	ANCESTRAL SPECIES	1	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Mus_A	ANCESTRAL SPECIES		ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Mus_C	ANCESTRAL SPECIES		ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00940000157226.e ##19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063 #24	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124
Steppe mouse	MODERN SPECIES	36										Api5 (ENSMSIG00000017696) #16	Ttc17 (ENSMSIG00000017737) #17	Hsd17b12 (ENSMSIG00000017936) #18	Alkbh3 (ENSMSIG00000017952) #19	Gm13889 (ENSMSIG00000018000) #20	Accsl (ENSMSIG00000018045) #21	Ext2 (ENSMSIG00000018155) #22	Alx4 (ENSMSIG00000018194) #23	ENSMSIG00000018210 #24	ENSMSIG00000018226 #25	Cd82 (ENSMSIG00000018232) #26	Tspan18 (ENSMSIG00000018260) #27	ENSMSIG00000018279 #28	Prdm11 (ENSMSIG00000018308) #29	ENSMSIG00000018406 #30	Syt13 (ENSMSIG00000018415) #31	Chst1 (ENSMSIG00000018432) #32	ENSMSIG00000018438 #33	Slc35c1 (ENSMSIG00000018455) #34	Cry2 (ENSMSIG00000018499) #35	Mapk8ip1 (ENSMSIG00000018534) #36	Frey1 (ENSMSIG00000018641) #37
spretus	MODERN SPECIES	11	Commd9 (MGP_SPRETEiJ_G0024915)	Prr5l (MGP_SPRETEiJ_G0024914)	Traf6 (MGP_SPRETEiJ_G0024913)	Rag1 (MGP_SPRETEiJ_G0024912)	Rag2 (MGP_SPRETEiJ_G0024911)	Iftap (MGP_SPRETEiJ_G0024910)	Lrrc4c (MGP_SPRETEiJ_G0024909)	Api5 (MGP_SPRETEiJ_G0024908) #16	Ttc17 (MGP_SPRETEiJ_G0024907) #17	Hsd17b12 (MGP_SPRETEiJ_G0024906) #18	Alkbh3 (MGP_SPRETEiJ_G0024905) #19	MGP_SPRETEiJ_G0024904 ##19	Gm13889 (MGP_SPRETEiJ_G0024903) #20	Accsl (MGP_SPRETEiJ_G0024902) #21	Accs (MGP_SPRETEiJ_G0024901)	Ext2 (MGP_SPRETEiJ_G0024900) #22	Alx4 (MGP_SPRETEiJ_G0024899) #23	MGP_SPRETEiJ_G0024898 #24	Cd82 (MGP_SPRETEiJ_G0024897) #26	Tspan18 (MGP_SPRETEiJ_G0024896) #27	Trp53i11 (MGP_SPRETEiJ_G0024895) #28	MGP_SPRETEiJ_G0024894 #29	Syt13 (MGP_SPRETEiJ_G0024893) #31	Chst1 (MGP_SPRETEiJ_G0024892) #32	Slc35c1 (MGP_SPRETEiJ_G0024891) #34	Cry2 (MGP_SPRETEiJ_G0024890) #35	Mapk8ip1 (MGP_SPRETEiJ_G0024889) #36	Frey1 (MGP_SPRETEiJ_G0024888) #37	Pex16 (MGP_SPRETEiJ_G0024887)	Large2 (MGP_SPRETEiJ_G0024886)	Phf21a (MGP_SPRETEiJ_G0024885)
Mouse	MODERN SPECIES	11	Commd9 (ENSMUSG00000027163)	Prr5l (ENSMUSG00000032841)	Traf6 (ENSMUSG00000027164)	Rag1 (ENSMUSG00000061311)	Rag2 (ENSMUSG00000032864)	Iftap (ENSMUSG00000027165)	Lrrc4c (ENSMUSG00000050587)	Api5 (ENSMUSG00000027193) #16	Ttc17 (ENSMUSG00000027194) #17	Hsd17b12 (ENSMUSG00000027195) #18	Alkbh3 (ENSMUSG00000040174) #19	Gm27027 (ENSMUSG00000098004)	Gm13889 (ENSMUSG00000087006) #20	Accsl (ENSMUSG00000075023) #21	Accs (ENSMUSG00000040272)	Ext2 (ENSMUSG00000027198) #22	Alx4 (ENSMUSG00000040310) #23	Cd82 (ENSMUSG00000027215) #26	Tspan18 (ENSMUSG00000027217) #27	Trp53i11 (ENSMUSG00000068735) #28	Prdm11 (ENSMUSG00000075028) #29	Syt13 (ENSMUSG00000027220) #31	Chst1 (ENSMUSG00000027221) #32	Slc35c1 (ENSMUSG00000049922) #34	Cry2 (ENSMUSG00000068742) #35	Mapk8ip1 (ENSMUSG00000027223) #36	Frey1 (ENSMUSG00000044916) #37	Pex16 (ENSMUSG00000027222)	Large2 (ENSMUSG00000040434)	Phf21a (ENSMUSG00000058318)	Creb3l1 (ENSMUSG00000027230)
Ryukyu mouse	MODERN SPECIES	11	Commd9 (MGP_CAROLIEiJ_G0024005)	Prr5l (MGP_CAROLIEiJ_G0024004)	Traf6 (MGP_CAROLIEiJ_G0024003)	Rag1 (MGP_CAROLIEiJ_G0024002)	Rag2 (MGP_CAROLIEiJ_G0024001)	Iftap (MGP_CAROLIEiJ_G0024000)	Lrrc4c (MGP_CAROLIEiJ_G0023999)	Api5 (MGP_CAROLIEiJ_G0023998) #16	Ttc17 (MGP_CAROLIEiJ_G0023997) #17	MGP_CAROLIEiJ_G0023996 #18	Alkbh3 (MGP_CAROLIEiJ_G0023995) #19	MGP_CAROLIEiJ_G0023994 ##19	Gm13889 (MGP_CAROLIEiJ_G0023993) #20	MGP_CAROLIEiJ_G0023992 #21	Accs (MGP_CAROLIEiJ_G0023991)	Ext2 (MGP_CAROLIEiJ_G0023990) #22	Alx4 (MGP_CAROLIEiJ_G0023989) #23	MGP_CAROLIEiJ_G0023988 #24	Cd82 (MGP_CAROLIEiJ_G0023987) #26	Tspan18 (MGP_CAROLIEiJ_G0023986) #27	MGP_CAROLIEiJ_G0023985 #28	MGP_CAROLIEiJ_G0023984 #29	Syt13 (MGP_CAROLIEiJ_G0023983) #31	Chst1 (MGP_CAROLIEiJ_G0023982) #32	Slc35c1 (MGP_CAROLIEiJ_G0023981) #34	Cry2 (MGP_CAROLIEiJ_G0023980) #35	Mapk8ip1 (MGP_CAROLIEiJ_G0023979) #36	Frey1 (MGP_CAROLIEiJ_G0023978) #37	Pex16 (MGP_CAROLIEiJ_G0023977)	Large2 (MGP_CAROLIEiJ_G0023976)	Phf21a (MGP_CAROLIEiJ_G0023975)
Shrew mouse	MODERN SPECIES	16	Commd9 (MGP_PahariEiJ_G0025441)	Prr5l (MGP_PahariEiJ_G0025440)	Traf6 (MGP_PahariEiJ_G0025439)	Rag1 (MGP_PahariEiJ_G0025438)	Rag2 (MGP_PahariEiJ_G0025437)	MGP_PahariEiJ_G0025436	Lrrc4c (MGP_PahariEiJ_G0025435)	Api5 (MGP_PahariEiJ_G0025434) #16	Ttc17 (MGP_PahariEiJ_G0025433) #17	Hsd17b12 (MGP_PahariEiJ_G0025432) #18	Alkbh3 (MGP_PahariEiJ_G0025431) #19	MGP_PahariEiJ_G0025430 ##19	Gm13889 (MGP_PahariEiJ_G0025429) #20	Accsl (MGP_PahariEiJ_G0025428) #21	Accs (MGP_PahariEiJ_G0025427)	Ext2 (MGP_PahariEiJ_G0025426) #22	Alx4 (MGP_PahariEiJ_G0025425) #23	MGP_PahariEiJ_G0025424 #24	Cd82 (MGP_PahariEiJ_G0025423) #26	Tspan18 (MGP_PahariEiJ_G0025422) #27	Trp53i11 (MGP_PahariEiJ_G0025421) #28	MGP_PahariEiJ_G0025420 #29	Syt13 (MGP_PahariEiJ_G0025419) #31	Chst1 (MGP_PahariEiJ_G0025418) #32	Cry2 (MGP_PahariEiJ_G0025417) #35	Mapk8ip1 (MGP_PahariEiJ_G0025416) #36	Frey1 (MGP_PahariEiJ_G0025415) #37	Pex16 (MGP_PahariEiJ_G0025414)	Large2 (MGP_PahariEiJ_G0025413)	Phf21a (MGP_PahariEiJ_G0025412)	Creb3l1 (MGP_PahariEiJ_G0025411)
Rat	MODERN SPECIES	13	Rag1 (ENSRNOG00000004630)	Rag2 (ENSRNOG00000004623)	Iftap (ENSRNOG00000037567)	LOC499843 (ENSRNOG00000032177)	AABR07053065.1 (ENSRNOG00000004381)	Lrrc4c (ENSRNOG00000029798)	ENSRNOG00000066316	Api5 (ENSRNOG00000009689) #16	Ttc17 (ENSRNOG00000010495) #17	Timm23-ps8 (ENSRNOG00000032900)	Hsd17b12 (ENSRNOG00000009630) #18	Alkbh3 (ENSRNOG00000021678) #19	RGD1564664 (ENSRNOG00000055564) #20	Accsl (ENSRNOG00000042533) #21	Accs (ENSRNOG00000009199)	Ext2 (ENSRNOG00000008944) #22	Alx4 (ENSRNOG00000000008) #23	Cd82 (ENSRNOG00000000047) #26	Tspan18 (ENSRNOG00000008758) #27	Tp53i11 (ENSRNOG00000008738) #28	ENSRNOG00000068495	Prdm11 (ENSRNOG00000008674) #29	Syt13 (ENSRNOG00000008000) #31	Chst1 (ENSRNOG00000007989) #32	Slc35c1 (ENSRNOG00000007732) #34	Cry2 (ENSRNOG00000007478) #35	Mapk8ip1 (ENSRNOG00000058478) #36	Frey1 (ENSRNOG00000006884) #37	Pex16 (ENSRNOG00000006539)	Large2 (ENSRNOG00000006353)	Phf21a (ENSRNOG00000006063)
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00550000074784.a.b	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Chinese hamster chok1gshd	MODERN SPECIES	188	Rag1 (ENSCGRG00001002046)	Rag2 (ENSCGRG00001011151)	Iftap (ENSCGRG00001020974)	ENSCGRG00001003416	ENSCGRG00001002351	ENSCGRG00001011370	Lrrc4c (ENSCGRG00001011183)	ENSCGRG00001022153	ENSCGRG00001002994	ENSCGRG00001023209 #16	Ttc17 (ENSCGRG00001008891) #17	Hsd17b12 (ENSCGRG00001024805) #18	Alkbh3 (ENSCGRG00001014489) #19	Gm13889 (ENSCGRG00001015067) #20	Accs (ENSCGRG00001017403)	Ext2 (ENSCGRG00001018610) #22	Alx4 (ENSCGRG00001013158) #23	Cd82 (ENSCGRG00001014213) #26	Tspan18 (ENSCGRG00001014966) #27	Trp53i11 (ENSCGRG00001015881) #28	ENSCGRG00001016971 #29	Syt13 (ENSCGRG00001017740) #31	Chst1 (ENSCGRG00001010952) #32	Slc35c1 (ENSCGRG00001019726) #34	Cry2 (ENSCGRG00001020400) #35	Mapk8ip1 (ENSCGRG00001016399) #36	Frey1 (ENSCGRG00001017596) #37	Pex16 (ENSCGRG00001024899)	Large2 (ENSCGRG00001001247)	Phf21a (ENSCGRG00001007974)	Creb3l1 (ENSCGRG00001011598)
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000010163	Ldlrad3 (ENSMAUG00000009660)	Commd9 (ENSMAUG00000003287)	Prr5l (ENSMAUG00000004032)	Traf6 (ENSMAUG00000005756)	Rag1 (ENSMAUG00000010819)	Rag2 (ENSMAUG00000010934)	Iftap (ENSMAUG00000010224)	Lrrc4c (ENSMAUG00000008203)	ENSMAUG00000008950 #16	Ttc17 (ENSMAUG00000010822) #17	Hsd17b12 (ENSMAUG00000011836) #18	Alkbh3 (ENSMAUG00000009317) #19	ENSMAUG00000010918 #20	Accs (ENSMAUG00000007912)	Ext2 (ENSMAUG00000009741) #22	Alx4 (ENSMAUG00000002663) #23	Cd82 (ENSMAUG00000003346) #26	Tspan18 (ENSMAUG00000003687) #27	Trp53i11 (ENSMAUG00000010266) #28	ENSMAUG00000010059 #29	Syt13 (ENSMAUG00000013295) #31	Chst1 (ENSMAUG00000011799) #32	Cry2 (ENSMAUG00000004486) #35	Mapk8ip1 (ENSMAUG00000005802) #36	Frey1 (ENSMAUG00000006630) #37	Pex16 (ENSMAUG00000011878)	Large2 (ENSMAUG00000008548)	Phf21a (ENSMAUG00000011351)	Creb3l1 (ENSMAUG00000003224)	Dgkz (ENSMAUG00000008433)
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226.f #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Prairie vole	MODERN SPECIES	81	Rag1 (ENSMOCG00000008467)	Rag2 (ENSMOCG00000011926)	Iftap (ENSMOCG00000016114)	ENSMOCG00000001289	ENSMOCG00000016731	ENSMOCG00000016690	Lrrc4c (ENSMOCG00000005308)	ENSMOCG00000017344	Api5 (ENSMOCG00000021910) #16	Ttc17 (ENSMOCG00000001736) #17	Hsd17b12 (ENSMOCG00000007308) #18	Alkbh3 (ENSMOCG00000012816) #19	ENSMOCG00000010059 #20	Accsl (ENSMOCG00000009949) #21	Accs (ENSMOCG00000015335)	Ext2 (ENSMOCG00000018938) #22	Alx4 (ENSMOCG00000004542) #23	Cd82 (ENSMOCG00000016145) #26	Tspan18 (ENSMOCG00000022221) #27	Trp53i11 (ENSMOCG00000022849) #28	ENSMOCG00000019982 #29	Syt13 (ENSMOCG00000013286) #31	Chst1 (ENSMOCG00000013785) #32	ENSMOCG00000015940	Slc35c1 (ENSMOCG00000000842) #34	ENSMOCG00000001841 #35	Mapk8ip1 (ENSMOCG00000007285) #36	Frey1 (ENSMOCG00000012907) #37	Pex16 (ENSMOCG00000015385)	Large2 (ENSMOCG00000004366)	Phf21a (ENSMOCG00000018126)
Northern American deer mouse	MODERN SPECIES	17	Prr5l (ENSPEMG00000014248)	Traf6 (ENSPEMG00000015556)	Rag1 (ENSPEMG00000018077)	Rag2 (ENSPEMG00000018407)	Iftap (ENSPEMG00000007125)	ENSPEMG00000028280	ENSPEMG00000025399	Lrrc4c (ENSPEMG00000012198)	ENSPEMG00000012394	Api5 (ENSPEMG00000019874) #16	Ttc17 (ENSPEMG00000019488) #17	Hsd17b12 (ENSPEMG00000019400) #18	Alkbh3 (ENSPEMG00000019372) #19	Gm13889 (ENSPEMG00000025209) #20	Accs (ENSPEMG00000016421)	Ext2 (ENSPEMG00000022691) #22	Alx4 (ENSPEMG00000022456) #23	Cd82 (ENSPEMG00000014649) #26	Tspan18 (ENSPEMG00000028780) #27	Trp53i11 (ENSPEMG00000028703) #28	ENSPEMG00000031347 #29	ENSPEMG00000025900	Syt13 (ENSPEMG00000000686) #31	Chst1 (ENSPEMG00000023266) #32	Slc35c1 (ENSPEMG00000027919) #34	Cry2 (ENSPEMG00000018313) #35	Mapk8ip1 (ENSPEMG00000019088) #36	Frey1 (ENSPEMG00000018435) #37	Pex16 (ENSPEMG00000008055)	Large2 (ENSPEMG00000013026)	Phf21a (ENSPEMG00000004446)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1714															Accs (ENSNGAG00000008263)	Ext2 (ENSNGAG00000013409) #22	Alx4 (ENSNGAG00000000011) #23	Cd82 (ENSNGAG00000000018) #26	Tspan18 (ENSNGAG00000016162) #27	Trp53i11 (ENSNGAG00000012429) #28	ENSNGAG00000018296 #29	Syt13 (ENSNGAG00000016681) #31	Chst1 (ENSNGAG00000011143) #32
Lesser Egyptian jerboa	MODERN SPECIES	62	ENSJJAG00000023954	Tll1 (ENSJJAG00000012213)	Cpe (ENSJJAG00000009087)	Msmo1 (ENSJJAG00000021536)	Klhl2 (ENSJJAG00000008522)	Asgr2 (ENSJJAG00000023464)	ENSJJAG00000009111	Slc16a11 (ENSJJAG00000016016)	Slc16a13 (ENSJJAG00000020350)	Bcl6b (ENSJJAG00000023524)	0610010K14Rik (ENSJJAG00000018786)	Rnasek (ENSJJAG00000018322)	Alox12 (ENSJJAG00000000399)	ENSJJAG00000008060	Pelp1 (ENSJJAG00000013033)	Ext2 (ENSJJAG00000003668) #22	Alx4 (ENSJJAG00000014358) #23	Cd82 (ENSJJAG00000010666) #26	Tspan18 (ENSJJAG00000009258) #27	Trp53i11 (ENSJJAG00000010306) #28	ENSJJAG00000020448 #29	Syt13 (ENSJJAG00000015391) #31	Chst1 (ENSJJAG00000009883) #32	Slc35c1 (ENSJJAG00000024143) #34	Cry2 (ENSJJAG00000023774) #35	Mapk8ip1 (ENSJJAG00000006389) #36	Frey1 (ENSJJAG00000020049) #37	Pex16 (ENSJJAG00000022973)	Large2 (ENSJJAG00000015799)	Phf21a (ENSJJAG00000016994)	Creb3l1 (ENSJJAG00000014152)
Kangaroo rat	MODERN SPECIES	444									ENSDORG00000029655	Api5 (ENSDORG00000003830) #16	Ttc17 (ENSDORG00000002398) #17	ENSDORG00000004834 #18	Alkbh3 (ENSDORG00000000083) #19	ENSDORG00000004336 #20	Accs (ENSDORG00000005063)	Ext2 (ENSDORG00000012848) #22	Alx4 (ENSDORG00000014002) #23	Cd82 (ENSDORG00000029810) #26	Tspan18 (ENSDORG00000004841) #27	Trp53i11 (ENSDORG00000024778) #28	ENSDORG00000029092 #29	Syt13 (ENSDORG00000005470) #31	Chst1 (ENSDORG00000025502) #32	Slc35c1 (ENSDORG00000027177) #34	Cry2 (ENSDORG00000015496) #35	Mapk8ip1 (ENSDORG00000015499) #36	Frey1 (ENSDORG00000024564) #37	Pex16 (ENSDORG00000015504)	Large2 (ENSDORG00000015507)	Phf21a (ENSDORG00000015508)	ENSDORG00000025559
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00440000034605	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991.p.a #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00940000155035.e.b	ENSGT00390000010991.o #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00940000155035.e.b	ENSGT00390000010991.o #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Long-tailed chinchilla	MODERN SPECIES	129	COMMD9 (ENSCLAG00000014761)	PRR5L (ENSCLAG00000015373)	TRAF6 (ENSCLAG00000015588)	RAG1 (ENSCLAG00000015510)	RAG2 (ENSCLAG00000016493)	IFTAP (ENSCLAG00000016504)	ENSCLAG00000017889	ENSCLAG00000013706	LRRC4C (ENSCLAG00000015479)	ENSCLAG00000015133	API5 (ENSCLAG00000013707) #16	TTC17 (ENSCLAG00000012857) #17	HSD17B12 (ENSCLAG00000016216) #18	ALKBH3 (ENSCLAG00000016579) #19	C11orf96 (ENSCLAG00000018096) #20	EXT2 (ENSCLAG00000014428) #22	ALX4 (ENSCLAG00000013928) #23	CD82 (ENSCLAG00000013557) #26	TSPAN18 (ENSCLAG00000013370) #27	TP53I11 (ENSCLAG00000013412) #28	PRDM11 (ENSCLAG00000015369) #29	SYT13 (ENSCLAG00000014302) #31	CHST1 (ENSCLAG00000013459) #32	SLC35C1 (ENSCLAG00000013258) #34	CRY2 (ENSCLAG00000014719) #35	ENSCLAG00000014881	MAPK8IP1 (ENSCLAG00000014552) #36	PEX16 (ENSCLAG00000013695)	LARGE2 (ENSCLAG00000014846)	PHF21A (ENSCLAG00000016632)	CREB3L1 (ENSCLAG00000013609)
Degu	MODERN SPECIES	59	RAG2 (ENSODEG00000020447)	IFTAP (ENSODEG00000016540)	ENSODEG00000020466	LRRC4C (ENSODEG00000020475)	ENSODEG00000020370	ENSODEG00000020406	ENSODEG00000016521	ENSODEG00000016280 #16	TTC17 (ENSODEG00000016728) #17	ENSODEG00000016649	HSD17B12 (ENSODEG00000016636) #18	ALKBH3 (ENSODEG00000017204) #19	C11orf96 (ENSODEG00000020497) #20	ENSODEG00000020538	ACCS (ENSODEG00000016512)	EXT2 (ENSODEG00000016764) #22	ALX4 (ENSODEG00000016139) #23	ENSODEG00000016065	ENSODEG00000020356	ENSODEG00000016115 #26	TSPAN18 (ENSODEG00000016609) #27	TP53I11 (ENSODEG00000016164) #28	ENSODEG00000015982	PRDM11 (ENSODEG00000016043) #29	SYT13 (ENSODEG00000016104) #31	CHST1 (ENSODEG00000020411) #32	SLC35C1 (ENSODEG00000016358) #34	CRY2 (ENSODEG00000016685) #35	MAPK8IP1 (ENSODEG00000016178) #36	FREY1 (ENSODEG00000016189) #37	PEX16 (ENSODEG00000016153)
Guinea pig	MODERN SPECIES	72								LRRC4C (ENSCPOG00000014997)	ENSCPOG00000025133	ENSCPOG00000011993 #16	TTC17 (ENSCPOG00000013524) #17	HSD17B12 (ENSCPOG00000031159) #18	ALKBH3 (ENSCPOG00000005138) #19	C11orf96 (ENSCPOG00000027092) #20	ACCS (ENSCPOG00000011925)	EXT2 (ENSCPOG00000011931) #22	ALX4 (ENSCPOG00000022496) #23	CD82 (ENSCPOG00000026415) #26	TSPAN18 (ENSCPOG00000001959) #27	TP53I11 (ENSCPOG00000038980) #28	PRDM11 (ENSCPOG00000019447) #29	SYT13 (ENSCPOG00000008033) #31	CHST1 (ENSCPOG00000037376) #32	SLC35C1 (ENSCPOG00000037302) #34	CRY2 (ENSCPOG00000001296) #35	MAPK8IP1 (ENSCPOG00000001298) #36	FREY1 (ENSCPOG00000032012) #37	PEX16 (ENSCPOG00000027497)	LARGE2 (ENSCPOG00000033339)	PHF21A (ENSCPOG00000001299)	CREB3L1 (ENSCPOG00000010073)
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559	ENSGT00390000013149	ENSGT00940000157405	ENSGT00390000010991 #16	ENSGT00390000006196 #17	ENSGT00940000154860 #18	ENSGT00940000157226 #19	ENSGT00390000016821 #20	ENSGT00940000162841 #21	ENSGT00940000161101	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #26	ENSGT00940000157667 #27	ENSGT00390000017249 #28	ENSGT00940000159837 #29	ENSGT00940000160226 #31	ENSGT00940000161262 #32	ENSGT00390000013315 #34	ENSGT00940000159073 #35	ENSGT00940000157089.B #36	ENSGT00390000018235 #37	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000156124	ENSGT00940000159848
Squirrel	MODERN SPECIES	162								API5 (ENSSTOG00000009298) #16	TTC17 (ENSSTOG00000009317) #17	HSD17B12 (ENSSTOG00000005473) #18	ALKBH3 (ENSSTOG00000006060) #19	C11orf96 (ENSSTOG00000030620) #20	ACCSL (ENSSTOG00000001158) #21	ENSSTOG00000033284	ENSSTOG00000004449	EXT2 (ENSSTOG00000004480) #22	ALX4 (ENSSTOG00000029078) #23	ENSSTOG00000023731 #26	TSPAN18 (ENSSTOG00000012343) #27	TP53I11 (ENSSTOG00000025635) #28	PRDM11 (ENSSTOG00000021186) #29	SYT13 (ENSSTOG00000004017) #31	CHST1 (ENSSTOG00000016359) #32	SLC35C1 (ENSSTOG00000022825) #34	CRY2 (ENSSTOG00000011521) #35	FREY1 (ENSSTOG00000027622) #37	MAPK8IP1 (ENSSTOG00000027362) #36	PEX16 (ENSSTOG00000011534)	LARGE2 (ENSSTOG00000011545)	PHF21A (ENSSTOG00000011552)	CREB3L1 (ENSSTOG00000012697)
Arctic ground squirrel	MODERN SPECIES	208																EXT2 (ENSUPAG00010008690) #22	ALX4 (ENSUPAG00010008717) #23	CD82 (ENSUPAG00010008728) #26	TSPAN18 (ENSUPAG00010008743) #27	TP53I11 (ENSUPAG00010008764) #28	ENSUPAG00010008787 #29	SYT13 (ENSUPAG00010008795) #31	CHST1 (ENSUPAG00010008807) #32	SLC35C1 (ENSUPAG00010008815) #34	CRY2 (ENSUPAG00010008829) #35	MAPK8IP1 (ENSUPAG00010008856) #36	FREY1 (ENSUPAG00010008915) #37	PEX16 (ENSUPAG00010008926)	LARGE2 (ENSUPAG00010008955)	PHF21A (ENSUPAG00010009105)	CREB3L1 (ENSUPAG00010010194)
Alpin marmot	MODERN SPECIES	3	PRR5L (ENSMMMG00000011238)	TRAF6 (ENSMMMG00000011285)	RAG1 (ENSMMMG00000011298)	RAG2 (ENSMMMG00000011304)	IFTAP (ENSMMMG00000011311)	LRRC4C (ENSMMMG00000011362)	API5 (ENSMMMG00000011483) #16	TTC17 (ENSMMMG00000011550) #17	HSD17B12 (ENSMMMG00000011610) #18	ENSMMMG00000011626	ALKBH3 (ENSMMMG00000011630) #19	C11orf96 (ENSMMMG00000011645) #20	ACCSL (ENSMMMG00000011649) #21	ENSMMMG00000011721	ACCS (ENSMMMG00000011728)	EXT2 (ENSMMMG00000011786) #22	ALX4 (ENSMMMG00000011816) #23	ENSMMMG00000011823	TSPAN18 (ENSMMMG00000011835) #27	TP53I11 (ENSMMMG00000011860) #28	PRDM11 (ENSMMMG00000011883) #29	SYT13 (ENSMMMG00000011892) #31	CHST1 (ENSMMMG00000011917) #32	SLC35C1 (ENSMMMG00000011928) #34	CRY2 (ENSMMMG00000011931) #35	MAPK8IP1 (ENSMMMG00000011982) #36	FREY1 (ENSMMMG00000012302) #37	PEX16 (ENSMMMG00000012310)	LARGE2 (ENSMMMG00000012317)	PHF21A (ENSMMMG00000012404)	CREB3L1 (ENSMMMG00000013137)
Eurasian red squirrel	MODERN SPECIES	2	PRR5L (ENSSVLG00005019340)	TRAF6 (ENSSVLG00005019219)	RAG1 (ENSSVLG00005019195)	RAG2 (ENSSVLG00005019171)	ENSSVLG00005019047	ENSSVLG00005019010	LRRC4C (ENSSVLG00005018979)	ENSSVLG00005018298 #16	TTC17 (ENSSVLG00005018176) #17	ENSSVLG00005018129	HSD17B12 (ENSSVLG00005018072) #18	ALKBH3 (ENSSVLG00005018027) #19	C11orf96 (ENSSVLG00005018003) #20	ACCSL (ENSSVLG00005017862) #21	ACCS (ENSSVLG00005017673)	EXT2 (ENSSVLG00005017472) #22	ALX4 (ENSSVLG00005017428) #23	ENSSVLG00005017405	CD82 (ENSSVLG00005017346) #26	TSPAN18 (ENSSVLG00005017248) #27	TP53I11 (ENSSVLG00005017174) #28	PRDM11 (ENSSVLG00005017126) #29	SYT13 (ENSSVLG00005017054) #31	CHST1 (ENSSVLG00005017036) #32	SLC35C1 (ENSSVLG00005016968) #34	CRY2 (ENSSVLG00005016727) #35	MAPK8IP1 (ENSSVLG00005016511) #36	FREY1 (ENSSVLG00005016461) #37	PEX16 (ENSSVLG00005016392)	LARGE2 (ENSSVLG00005016132)	PHF21A (ENSSVLG00005016012)