Amniota	ANCESTRAL SPECIES	20	ENSGT00440000034605	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Theria	ANCESTRAL SPECIES	8	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Primates	ANCESTRAL SPECIES		ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Haplorrhini	ANCESTRAL SPECIES		ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Simiiformes	ANCESTRAL SPECIES		ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154430.e.b	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Hominidae	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Orangutan	MODERN SPECIES	2	LDLRAD3 (ENSPPYG00000003354) #7	COMMD9 (ENSPPYG00000003352) #8	PRR5L (ENSPPYG00000003351) #9	TRAF6 (ENSPPYG00000003350) #10	RAG1 (ENSPPYG00000034216) #11	RAG2 (ENSPPYG00000003348) #12	IFTAP (ENSPPYG00000003347) #13	LRRC4C (ENSPPYG00000003346) #14	API5 (ENSPPYG00000003345) #15	TTC17 (ENSPPYG00000003344) #16	HSD17B12 (ENSPPYG00000003343) #17	ALKBH3 (ENSPPYG00000003342) #18	ENSPPYG00000003341 #19	ACCSL (ENSPPYG00000003340) #20	ACCS (ENSPPYG00000003339) #21	EXT2 (ENSPPYG00000003338) #22	ALX4 (ENSPPYG00000003337) #23	CD82 (ENSPPYG00000003336) #24	TSPAN18 (ENSPPYG00000003335) #25	TP53I11 (ENSPPYG00000003334) #26	PRDM11 (ENSPPYG00000036125) #27	SYT13 (ENSPPYG00000033572) #28	CHST1 (ENSPPYG00000031467) #29	SLC35C1 (ENSPPYG00000032339) #30	CRY2 (ENSPPYG00000003329) #31	MAPK8IP1 (ENSPPYG00000003328) #32	FREY1 (ENSPPYG00000041330) #33	PEX16 (ENSPPYG00000003327) #34	LARGE2 (ENSPPYG00000003326) #35	PHF21A (ENSPPYG00000003325) #36	CREB3L1 (ENSPPYG00000003324) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00530000063981.b #9	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154430.e.b	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00530000063981.b #9	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154430.e.b	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Pan	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154430.e.b	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Chimpanzee	MODERN SPECIES	2	PRR5L (ENSPTRG00000003509) #9	TRAF6 (ENSPTRG00000003510) #10	RAG1 (ENSPTRG00000050436) #11	RAG2 (ENSPTRG00000003513) #12	IFTAP (ENSPTRG00000003514) #13	LRRC4C (ENSPTRG00000003515) #14	API5 (ENSPTRG00000003516) #15	TTC17 (ENSPTRG00000003518) #16	ENSPTRG00000048907	HSD17B12 (ENSPTRG00000003522) #17	ENSPTRG00000047126	ALKBH3 (ENSPTRG00000003523) #18	ENSPTRG00000047659	ENSPTRG00000046726 #19	ACCSL (ENSPTRG00000028662) #20	EXT2 (ENSPTRG00000003528) #22	ALX4 (ENSPTRG00000003529) #23	CD82 (ENSPTRG00000003530) #24	TP53I11 (ENSPTRG00000003532) #26	TSPAN18 (ENSPTRG00000003531) #25	PRDM11 (ENSPTRG00000003533) #27	SYT13 (ENSPTRG00000003534) #28	CHST1 (ENSPTRG00000003535) #29	ENSPTRG00000028656	SLC35C1 (ENSPTRG00000003536) #30	CRY2 (ENSPTRG00000003537) #31	MAPK8IP1 (ENSPTRG00000003538) #32	FREY1 (ENSPTRG00000050232) #33	PEX16 (ENSPTRG00000003539) #34	LARGE2 (ENSPTRG00000050910) #35	PHF21A (ENSPTRG00000003542) #36
Bonobo	MODERN SPECIES	2	PRR5L (ENSPPAG00000042360) #9	TRAF6 (ENSPPAG00000042961) #10	RAG1 (ENSPPAG00000043768) #11	RAG2 (ENSPPAG00000004799) #12	IFTAP (ENSPPAG00000024881) #13	LRRC4C (ENSPPAG00000005583) #14	API5 (ENSPPAG00000035313) #15	TTC17 (ENSPPAG00000036754) #16	ENSPPAG00000035030	HSD17B12 (ENSPPAG00000041012) #17	ENSPPAG00000043963	ALKBH3 (ENSPPAG00000028729) #18	ENSPPAG00000033607	ENSPPAG00000033790 #19	ACCSL (ENSPPAG00000033128) #20	EXT2 (ENSPPAG00000041401) #22	CD82 (ENSPPAG00000022324) #24	TSPAN18 (ENSPPAG00000031547) #25	ENSPPAG00000028354 #26	PRDM11 (ENSPPAG00000043398) #27	SYT13 (ENSPPAG00000027303) #28	ENSPPAG00000035471	SLC35C1 (ENSPPAG00000039643) #30	CRY2 (ENSPPAG00000033780) #31	MAPK8IP1 (ENSPPAG00000010367) #32	FREY1 (ENSPPAG00000027942) #33	PEX16 (ENSPPAG00000042419) #34	LARGE2 (ENSPPAG00000037963) #35	PHF21A (ENSPPAG00000040226) #36	CREB3L1 (ENSPPAG00000029634) #37	DGKZ (ENSPPAG00000038574)
Human	MODERN SPECIES	2	LDLRAD3 (ENSG00000179241) #7	COMMD9 (ENSG00000110442) #8	PRR5L (ENSG00000135362) #9	TRAF6 (ENSG00000175104) #10	RAG1 (ENSG00000166349) #11	RAG2 (ENSG00000175097) #12	IFTAP (ENSG00000166352) #13	LRRC4C (ENSG00000148948) #14	API5 (ENSG00000166181) #15	TTC17 (ENSG00000052841) #16	HSD17B12 (ENSG00000149084) #17	ALKBH3 (ENSG00000166199) #18	C11orf96 (ENSG00000187479) #19	ACCSL (ENSG00000205126) #20	ACCS (ENSG00000110455) #21	EXT2 (ENSG00000151348) #22	ALX4 (ENSG00000052850) #23	CD82 (ENSG00000085117) #24	TSPAN18 (ENSG00000157570) #25	TP53I11 (ENSG00000175274) #26	PRDM11 (ENSG00000019485) #27	SYT13 (ENSG00000019505) #28	CHST1 (ENSG00000175264) #29	SLC35C1 (ENSG00000181830) #30	CRY2 (ENSG00000121671) #31	MAPK8IP1 (ENSG00000121653) #32	FREY1 (ENSG00000234776) #33	PEX16 (ENSG00000121680) #34	LARGE2 (ENSG00000165905) #35	PHF21A (ENSG00000135365) #36	CREB3L1 (ENSG00000157613) #37
Gorilla	MODERN SPECIES	2	RAG1 (ENSGGOG00000041736) #11	RAG2 (ENSGGOG00000027505) #12	IFTAP (ENSGGOG00000004773) #13	ENSGGOG00000024548	LRRC4C (ENSGGOG00000006776) #14	API5 (ENSGGOG00000002358) #15	TTC17 (ENSGGOG00000008811) #16	ENSGGOG00000022574	HSD17B12 (ENSGGOG00000002003) #17	ENSGGOG00000024238	ALKBH3 (ENSGGOG00000001931) #18	ENSGGOG00000007196	ENSGGOG00000001934 #19	ACCSL (ENSGGOG00000004173) #20	ACCS (ENSGGOG00000003124) #21	EXT2 (ENSGGOG00000010737) #22	ALX4 (ENSGGOG00000014265) #23	CD82 (ENSGGOG00000010189) #24	TSPAN18 (ENSGGOG00000006952) #25	ENSGGOG00000006941 #26	PRDM11 (ENSGGOG00000017094) #27	SYT13 (ENSGGOG00000017096) #28	ENSGGOG00000014803	SLC35C1 (ENSGGOG00000001327) #30	CRY2 (ENSGGOG00000002293) #31	ENSGGOG00000002296 #32	FREY1 (ENSGGOG00000027882) #33	PEX16 (ENSGGOG00000002298) #34	LARGE2 (ENSGGOG00000002302) #35	PHF21A (ENSGGOG00000002304) #36	CREB3L1 (ENSGGOG00000015181) #37
Gibbon	MODERN SPECIES	5	PRR5L (ENSNLEG00000017945) #9	TRAF6 (ENSNLEG00000017949) #10	RAG1 (ENSNLEG00000017951) #11	RAG2 (ENSNLEG00000017952) #12	IFTAP (ENSNLEG00000017953) #13	LRRC4C (ENSNLEG00000017955) #14	API5 (ENSNLEG00000017956) #15	TTC17 (ENSNLEG00000017958) #16	HSD17B12 (ENSNLEG00000035088) #17	ENSNLEG00000033255	ALKBH3 (ENSNLEG00000027521) #18	ENSNLEG00000030198	ENSNLEG00000017965 #19	ACCSL (ENSNLEG00000017966) #20	ACCS (ENSNLEG00000017967) #21	EXT2 (ENSNLEG00000017968) #22	CD82 (ENSNLEG00000017971) #24	ENSNLEG00000017974 #26	TSPAN18 (ENSNLEG00000031862) #25	PRDM11 (ENSNLEG00000017975) #27	SYT13 (ENSNLEG00000017977) #28	PEX16 (ENSNLEG00000031315) #34	FREY1 (ENSNLEG00000032767) #33	ENSNLEG00000017982 #32	ENSNLEG00000017983 #31	SLC35C1 (ENSNLEG00000017984) #30	ENSNLEG00000017985	ENSNLEG00000031203	ENSNLEG00000027973	PTPRJ (ENSNLEG00000014775)	ENSNLEG00000033967
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154430.e.b	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154430.e.b	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00390000009130.a.a.a.b	ENSGT00940000157405 #14	ENSGT00910000147254	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00390000009130.a.a.a.b	ENSGT00940000157405 #14	ENSGT00910000147254	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00910000147254	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.b.c.a.a.a.a	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000154860.q #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT01100000263577.a.a.b.a.b.a.a.b.b.a.a	ENSGT00940000162841 #20	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000161627.a.a.a.a.b.a.a.a.a.b.b.a.a.b.b.a
Rhesus	MODERN SPECIES	5	RAG1 (ENSMMUG00000049488) #11	RAG2 (ENSMMUG00000018268) #12	IFTAP (ENSMMUG00000018269) #13	LRRC4C (ENSMMUG00000007945) #14	ENSMMUG00000049895	ENSMMUG00000049945	API5 (ENSMMUG00000008827) #15	TTC17 (ENSMMUG00000000844) #16	ENSMMUG00000048799	HSD17B12 (ENSMMUG00000018465) #17	ENSMMUG00000056754	ALKBH3 (ENSMMUG00000017294) #18	C14H11orf96 (ENSMMUG00000018464) #19	ENSMMUG00000059789	ACCSL (ENSMMUG00000019693) #20	EXT2 (ENSMMUG00000013095) #22	ALX4 (ENSMMUG00000049355) #23	ENSMMUG00000053780	CD82 (ENSMMUG00000019268) #24	TSPAN18 (ENSMMUG00000000368) #25	TP53I11 (ENSMMUG00000059728) #26	ENSMMUG00000052571	PRDM11 (ENSMMUG00000015106) #27	SYT13 (ENSMMUG00000011449) #28	CHST1 (ENSMMUG00000000874) #29	ENSMMUG00000047219	SLC35C1 (ENSMMUG00000002452) #30	CRY2 (ENSMMUG00000002453) #31	MAPK8IP1 (ENSMMUG00000002456) #32	PEX16 (ENSMMUG00000008878) #34	LARGE2 (ENSMMUG00000002611) #35
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000065238	ENSMFAG00000052848	ENSMFAG00000059926	ENSMFAG00000052309	ENSMFAG00000063638	ENSMFAG00000045706	API5 (ENSMFAG00000037679) #15	TTC17 (ENSMFAG00000033718) #16	ENSMFAG00000022553	ENSMFAG00000032353	HSD17B12 (ENSMFAG00000030974) #17	ALKBH3 (ENSMFAG00000031334) #18	C11orf96 (ENSMFAG00000030397) #19	ENSMFAG00000064908	ACCSL (ENSMFAG00000041332) #20	EXT2 (ENSMFAG00000043519) #22	ALX4 (ENSMFAG00000002075) #23	CD82 (ENSMFAG00000035741) #24	TSPAN18 (ENSMFAG00000054272) #25	TP53I11 (ENSMFAG00000035363) #26	PRDM11 (ENSMFAG00000045073) #27	SYT13 (ENSMFAG00000056606) #28	CHST1 (ENSMFAG00000033195) #29	ENSMFAG00000029506	SLC35C1 (ENSMFAG00000052749) #30	CRY2 (ENSMFAG00000045219) #31	MAPK8IP1 (ENSMFAG00000045393) #32	FREY1 (ENSMFAG00000056527) #33	PEX16 (ENSMFAG00000002349) #34	LARGE2 (ENSMFAG00000002253) #35	PHF21A (ENSMFAG00000043688) #36
Pig-tailed macaque	MODERN SPECIES	485	RAG2 (ENSMNEG00000022173) #12	IFTAP (ENSMNEG00000044678) #13	ENSMNEG00000032979	LRRC4C (ENSMNEG00000017892) #14	ENSMNEG00000008856	ENSMNEG00000013022	ENSMNEG00000031138	API5 (ENSMNEG00000030042) #15	TTC17 (ENSMNEG00000045201) #16	HSD17B12 (ENSMNEG00000013166) #17	ENSMNEG00000041918	ALKBH3 (ENSMNEG00000042403) #18	C11orf96 (ENSMNEG00000026217) #19	ACCSL (ENSMNEG00000028079) #20	ACCS (ENSMNEG00000038482) #21	EXT2 (ENSMNEG00000018683) #22	ALX4 (ENSMNEG00000037261) #23	CD82 (ENSMNEG00000031650) #24	TSPAN18 (ENSMNEG00000036152) #25	TP53I11 (ENSMNEG00000039232) #26	PRDM11 (ENSMNEG00000028352) #27	SYT13 (ENSMNEG00000042088) #28	ENSMNEG00000040801	SLC35C1 (ENSMNEG00000031995) #30	CRY2 (ENSMNEG00000032337) #31	MAPK8IP1 (ENSMNEG00000038621) #32	FREY1 (ENSMNEG00000035102) #33	PEX16 (ENSMNEG00000043356) #34	LARGE2 (ENSMNEG00000040995) #35	PHF21A (ENSMNEG00000041377) #36	CREB3L1 (ENSMNEG00000041356) #37
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00390000009130.a.a.a.b	ENSGT00940000157405 #14	ENSGT00910000147254	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Olive baboon	MODERN SPECIES	3	ENSPANG00000024857	OR5D14 (ENSPANG00000046458)	OR5D3P (ENSPANG00000047909)	OR4C11 (ENSPANG00000040117)	OR4C15 (ENSPANG00000030496)	OR4A15 (ENSPANG00000030032)	OR4A5 (ENSPANG00000040615)	OR4A8 (ENSPANG00000008177)	OR4A47 (ENSPANG00000039598)	API5 (ENSPANG00000008592) #15	TTC17 (ENSPANG00000018410) #16	ENSPANG00000047558	HSD17B12 (ENSPANG00000010432) #17	ACCSL (ENSPANG00000016162) #20	ALKBH3 (ENSPANG00000003104) #18	EXT2 (ENSPANG00000007186) #22	ALX4 (ENSPANG00000023497) #23	CD82 (ENSPANG00000017077) #24	TSPAN18 (ENSPANG00000017380) #25	TP53I11 (ENSPANG00000016551) #26	ENSPANG00000044641	ENSPANG00000040777	PRDM11 (ENSPANG00000019134) #27	SYT13 (ENSPANG00000014366) #28	CHST1 (ENSPANG00000005033) #29	ENSPANG00000029497	SLC35C1 (ENSPANG00000046643) #30	CRY2 (ENSPANG00000013724) #31	MAPK8IP1 (ENSPANG00000018015) #32	FREY1 (ENSPANG00000011142) #33	PEX16 (ENSPANG00000005226) #34
Cercopithecinae_d	ANCESTRAL SPECIES	61	ENSGT00940000155426.s #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00390000009130.a.a.a.b	ENSGT00940000157405 #14	ENSGT00910000147254	ENSGT00390000010991.e #15	ENSGT00390000006196 #16	ENSGT00940000154860.q #17	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Sooty mangabey	MODERN SPECIES	660	IFTAP (ENSCATG00000030440) #13	ENSCATG00000007177	LRRC4C (ENSCATG00000021681) #14	ENSCATG00000037205	ENSCATG00000036798	API5 (ENSCATG00000030276) #15	TTC17 (ENSCATG00000032553) #16	ENSCATG00000009013	ENSCATG00000018523	HSD17B12 (ENSCATG00000039158) #17	ENSCATG00000029253	ALKBH3 (ENSCATG00000035646) #18	ENSCATG00000038560 #19	ACCSL (ENSCATG00000011907) #20	ACCS (ENSCATG00000034670) #21	EXT2 (ENSCATG00000000776) #22	ALX4 (ENSCATG00000029177) #23
Drill	MODERN SPECIES	1384								ENSMLEG00000044323	API5 (ENSMLEG00000005217) #15	TTC17 (ENSMLEG00000029329) #16	HSD17B12 (ENSMLEG00000042493) #17	ENSMLEG00000043569	ALKBH3 (ENSMLEG00000038324) #18	ACCSL (ENSMLEG00000040591) #20	ACCS (ENSMLEG00000031788) #21	EXT2 (ENSMLEG00000028504) #22	ALX4 (ENSMLEG00000030036) #23	CD82 (ENSMLEG00000038298) #24	TSPAN18 (ENSMLEG00000033147) #25	TP53I11 (ENSMLEG00000038198) #26	PRDM11 (ENSMLEG00000006161) #27	SYT13 (ENSMLEG00000028737) #28	ENSMLEG00000037814	SLC35C1 (ENSMLEG00000038176) #30	CRY2 (ENSMLEG00000043646) #31	MAPK8IP1 (ENSMLEG00000011311) #32	FREY1 (ENSMLEG00000030295) #33	PEX16 (ENSMLEG00000036346) #34	LARGE2 (ENSMLEG00000030482) #35	PHF21A (ENSMLEG00000024105) #36	CREB3L1 (ENSMLEG00000044403) #37
Vervet Monkey	MODERN SPECIES		PRR5L (ENSCSAG00000005478) #9	TRAF6 (ENSCSAG00000005486) #10	RAG1 (ENSCSAG00000005489) #11	RAG2 (ENSCSAG00000019213) #12	IFTAP (ENSCSAG00000005492) #13	ENSCSAG00000005494	LRRC4C (ENSCSAG00000019212) #14	API5 (ENSCSAG00000005506) #15	TTC17 (ENSCSAG00000005526) #16	ENSCSAG00000005530	HSD17B12 (ENSCSAG00000005534) #17	ALKBH3 (ENSCSAG00000005539) #18	ENSCSAG00000005541 #19	ACCSL (ENSCSAG00000005546) #20	ACCS (ENSCSAG00000005552) #21	EXT2 (ENSCSAG00000005563) #22	ALX4 (ENSCSAG00000005569) #23	CD82 (ENSCSAG00000005577) #24	TSPAN18 (ENSCSAG00000005584) #25	TP53I11 (ENSCSAG00000005590) #26	ENSCSAG00000005593 #27	SYT13 (ENSCSAG00000005596) #28	CHST1 (ENSCSAG00000019211) #29	SLC35C1 (ENSCSAG00000005597) #30	CRY2 (ENSCSAG00000005615) #31	FREY1 (ENSCSAG00000005627) #33	MAPK8IP1 (ENSCSAG00000005632) #32	PEX16 (ENSCSAG00000005637) #34	LARGE2 (ENSCSAG00000005648) #35	PHF21A (ENSCSAG00000005653) #36	CREB3L1 (ENSCSAG00000005658) #37
Rhinopithecus	ANCESTRAL SPECIES	64							ENSGT00390000010991.e #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00950000183070.a.b.g.b.b.a.b	ENSGT00940000154860.q #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00410000028889	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Golden snub-nosed monkey	MODERN SPECIES	2052							API5 (ENSRROG00000044828) #15	TTC17 (ENSRROG00000037403) #16	ENSRROG00000030841	HSD17B12 (ENSRROG00000041742) #17	ENSRROG00000041792	ALKBH3 (ENSRROG00000042173) #18	ENSRROG00000033606 #19	ACCSL (ENSRROG00000030953) #20	ACCS (ENSRROG00000026946) #21	EXT2 (ENSRROG00000044283) #22	ALX4 (ENSRROG00000030701) #23
Black snub-nosed monkey	MODERN SPECIES	1919							API5 (ENSRBIG00000029193) #15	ENSRBIG00000044980	TTC17 (ENSRBIG00000029297) #16	ENSRBIG00000044584	HSD17B12 (ENSRBIG00000044912) #17	ALKBH3 (ENSRBIG00000034161) #18	ENSRBIG00000035154 #19	ACCSL (ENSRBIG00000009585) #20	ACCS (ENSRBIG00000030372) #21	EXT2 (ENSRBIG00000028133) #22	ALX4 (ENSRBIG00000037930) #23	CD82 (ENSRBIG00000027262) #24	TSPAN18 (ENSRBIG00000033885) #25	TP53I11 (ENSRBIG00000038004) #26	PRDM11 (ENSRBIG00000038416) #27	SYT13 (ENSRBIG00000039991) #28	CHST1 (ENSRBIG00000041102) #29	ENSRBIG00000031332	SLC35C1 (ENSRBIG00000037020) #30	CRY2 (ENSRBIG00000011544) #31	MAPK8IP1 (ENSRBIG00000044423) #32	FREY1 (ENSRBIG00000026731) #33	PEX16 (ENSRBIG00000038630) #34	LARGE2 (ENSRBIG00000043312) #35	PHF21A (ENSRBIG00000033320) #36
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183070.a.b.g.b.a	ENSGT00940000162841.c.a #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Cebidae	ANCESTRAL SPECIES		ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183070.a.b.g.b.a	ENSGT00940000162841.c.a #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00950000183087.A.b.a	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183070.a.b.g.b.a	ENSGT00940000162841.c.a #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Bolivian squirrel monkey	MODERN SPECIES	42	RAG2 (ENSSBOG00000017623) #12	IFTAP (ENSSBOG00000025933) #13	ENSSBOG00000033020	LRRC4C (ENSSBOG00000018653) #14	ENSSBOG00000031892	ENSSBOG00000029311	API5 (ENSSBOG00000021448) #15	TTC17 (ENSSBOG00000027019) #16	ENSSBOG00000026907	HSD17B12 (ENSSBOG00000023716) #17	ALKBH3 (ENSSBOG00000023947) #18	C11orf96 (ENSSBOG00000012454) #19	ENSSBOG00000024546	ENSSBOG00000020375 #20	ACCS (ENSSBOG00000025833) #21	EXT2 (ENSSBOG00000012532) #22	ALX4 (ENSSBOG00000032868) #23	CD82 (ENSSBOG00000029660) #24	TSPAN18 (ENSSBOG00000032945) #25	TP53I11 (ENSSBOG00000028120) #26	PRDM11 (ENSSBOG00000000613) #27	SYT13 (ENSSBOG00000026952) #28	CHST1 (ENSSBOG00000018516) #29	SLC35C1 (ENSSBOG00000031356) #30	CRY2 (ENSSBOG00000028749) #31	MAPK8IP1 (ENSSBOG00000021861) #32	FREY1 (ENSSBOG00000032977) #33	PEX16 (ENSSBOG00000001635) #34	LARGE2 (ENSSBOG00000024444) #35	PHF21A (ENSSBOG00000026213) #36	CREB3L1 (ENSSBOG00000026826) #37
Capuchin	MODERN SPECIES	58				LRRC4C (ENSCCAG00000019589) #14	ENSCCAG00000026256	ENSCCAG00000021429	API5 (ENSCCAG00000031287) #15	ENSCCAG00000026499	TTC17 (ENSCCAG00000035081) #16	ENSCCAG00000019236	HSD17B12 (ENSCCAG00000031540) #17	ALKBH3 (ENSCCAG00000036907) #18	C11orf96 (ENSCCAG00000006365) #19	ACCSL (ENSCCAG00000037654) #20	ACCS (ENSCCAG00000034085) #21	EXT2 (ENSCCAG00000033740) #22	ALX4 (ENSCCAG00000029037) #23	ENSCCAG00000020098	ENSCCAG00000030210	CD82 (ENSCCAG00000037197) #24	TSPAN18 (ENSCCAG00000025852) #25	TP53I11 (ENSCCAG00000035507) #26	PRDM11 (ENSCCAG00000028556) #27	SYT13 (ENSCCAG00000033600) #28	CHST1 (ENSCCAG00000009268) #29	SLC35C1 (ENSCCAG00000026564) #30	CRY2 (ENSCCAG00000021672) #31	MAPK8IP1 (ENSCCAG00000020551) #32	C11orf94 (ENSCCAG00000021208) #33	PEX16 (ENSCCAG00000030937) #34	LARGE2 (ENSCCAG00000022292) #35
Marmoset	MODERN SPECIES	2	RAG1 (ENSCJAG00000039101) #11	RAG2 (ENSCJAG00000011084) #12	ENSCJAG00000069702	ENSCJAG00000056043	ENSCJAG00000086386	ENSCJAG00000071318	ENSCJAG00000051814	ENSCJAG00000081434	TTC17 (ENSCJAG00000011232) #16	ENSCJAG00000076955	HSD17B12 (ENSCJAG00000011325) #17	ALKBH3 (ENSCJAG00000011353) #18	C11orf96 (ENSCJAG00000041387) #19	ENSCJAG00000011384 #20	ACCS (ENSCJAG00000011398) #21	EXT2 (ENSCJAG00000011414) #22	ALX4 (ENSCJAG00000011438) #23	CD82 (ENSCJAG00000011453) #24	TSPAN18 (ENSCJAG00000011479) #25	TP53I11 (ENSCJAG00000011462) #26	PRDM11 (ENSCJAG00000011508) #27	SYT13 (ENSCJAG00000038216) #28	CHST1 (ENSCJAG00000011537) #29	SLC35C1 (ENSCJAG00000011547) #30	CRY2 (ENSCJAG00000011551) #31	MAPK8IP1 (ENSCJAG00000011571) #32	FREY1 (ENSCJAG00000011591) #33	PEX16 (ENSCJAG00000011594) #34	ENSCJAG00000078830	LARGE2 (ENSCJAG00000011627) #35	PHF21A (ENSCJAG00000011670) #36
Mas night monkey	MODERN SPECIES	349	COMMD9 (ENSANAG00000022827) #8	PRR5L (ENSANAG00000020046) #9	TRAF6 (ENSANAG00000027972) #10	RAG1 (ENSANAG00000020150) #11	RAG2 (ENSANAG00000020159) #12	IFTAP (ENSANAG00000034158) #13	LRRC4C (ENSANAG00000002444) #14	API5 (ENSANAG00000035535) #15	TTC17 (ENSANAG00000033544) #16	HSD17B12 (ENSANAG00000001245) #17	ALKBH3 (ENSANAG00000033941) #18	ENSANAG00000032918 #19	ENSANAG00000021583	ACCSL (ENSANAG00000038530) #20	ACCS (ENSANAG00000023624) #21	EXT2 (ENSANAG00000027569) #22	ALX4 (ENSANAG00000028117) #23	CD82 (ENSANAG00000036520) #24	TSPAN18 (ENSANAG00000027315) #25	TP53I11 (ENSANAG00000031078) #26	PRDM11 (ENSANAG00000038312) #27	SYT13 (ENSANAG00000038476) #28	ENSANAG00000000306	CHST1 (ENSANAG00000020142) #29	SLC35C1 (ENSANAG00000036877) #30	CRY2 (ENSANAG00000028154) #31	MAPK8IP1 (ENSANAG00000023346) #32	FREY1 (ENSANAG00000023251) #33	PEX16 (ENSANAG00000024741) #34	LARGE2 (ENSANAG00000024552) #35	PHF21A (ENSANAG00000033662) #36
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6578															ENSTSYG00000011619 #21	ENSTSYG00000032753 #22	ENSTSYG00000035097
Tarsier	MODERN SPECIES	5104															ENSTSYG00000031368 #21	ENSTSYG00000033372 #22
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Bushbaby	MODERN SPECIES	116	TRAF6 (ENSOGAG00000007506) #10	ENSOGAG00000027339 #11	ENSOGAG00000031605 #12	IFTAP (ENSOGAG00000011890) #13	ENSOGAG00000029194	ENSOGAG00000031537	ENSOGAG00000025009	LRRC4C (ENSOGAG00000001283) #14	API5 (ENSOGAG00000013625) #15	TTC17 (ENSOGAG00000013632) #16	HSD17B12 (ENSOGAG00000009102) #17	ALKBH3 (ENSOGAG00000009107) #18	ENSOGAG00000028628 #19	ENSOGAG00000013452 #20	ACCS (ENSOGAG00000013457) #21	EXT2 (ENSOGAG00000013459) #22	ENSOGAG00000029737	ALX4 (ENSOGAG00000034351) #23	CD82 (ENSOGAG00000015627) #24	TSPAN18 (ENSOGAG00000015266) #25	TP53I11 (ENSOGAG00000015257) #26	ENSOGAG00000004585 #27	SYT13 (ENSOGAG00000004588) #28	ENSOGAG00000034921	CHST1 (ENSOGAG00000025459) #29	SLC35C1 (ENSOGAG00000029726) #30	CRY2 (ENSOGAG00000012553) #31	MAPK8IP1 (ENSOGAG00000012556) #32	FREY1 (ENSOGAG00000034239) #33	PEX16 (ENSOGAG00000012559) #34	LARGE2 (ENSOGAG00000012560) #35
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315.i.b #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Mouse lemur	MODERN SPECIES	27	COMMD9 (ENSMICG00000008594) #8	PRR5L (ENSMICG00000047184) #9	TRAF6 (ENSMICG00000008604) #10	IFTAP (ENSMICG00000008620) #13	ENSMICG00000043108	LRRC4C (ENSMICG00000047157) #14	ENSMICG00000014581 #15	TTC17 (ENSMICG00000014602) #16	HSD17B12 (ENSMICG00000014632) #17	ALKBH3 (ENSMICG00000014651) #18	C11orf96 (ENSMICG00000041610) #19	ENSMICG00000034539	ACCSL (ENSMICG00000014661) #20	ACCS (ENSMICG00000007981) #21	ENSMICG00000028094	EXT2 (ENSMICG00000014680) #22	ALX4 (ENSMICG00000048133) #23	CD82 (ENSMICG00000010264) #24	TSPAN18 (ENSMICG00000006504) #25	TP53I11 (ENSMICG00000033784) #26	PRDM11 (ENSMICG00000014133) #27	SYT13 (ENSMICG00000029048) #28	CHST1 (ENSMICG00000037424) #29	SLC35C1 (ENSMICG00000014174) #30	CRY2 (ENSMICG00000014177) #31	MAPK8IP1 (ENSMICG00000014190) #32	FREY1 (ENSMICG00000042017) #33	PEX16 (ENSMICG00000014206) #34	LARGE2 (ENSMICG00000014226) #35	PHF21A (ENSMICG00000014259) #36	CREB3L1 (ENSMICG00000006853) #37
Lemuriformes_a	ANCESTRAL SPECIES	75									ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315.i.b #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Coquerels sifaka	MODERN SPECIES	623										API5 (ENSPCOG00000021482) #15	TTC17 (ENSPCOG00000018167) #16	HSD17B12 (ENSPCOG00000011901) #17	ALKBH3 (ENSPCOG00000020139) #18	ENSPCOG00000023668 #19	ACCS (ENSPCOG00000016942) #21	EXT2 (ENSPCOG00000021172) #22	ALX4 (ENSPCOG00000016478) #23	CD82 (ENSPCOG00000011651) #24
Greater bamboo lemur	MODERN SPECIES	653	GLIPR1L2 (ENSPSMG00000010610)	GLIPR1 (ENSPSMG00000010638)	KRR1 (ENSPSMG00000010670)	ENSPSMG00000010677	ENSPSMG00000010684	NAP1L1 (ENSPSMG00000010832)	ENSPSMG00000010987	BBS10 (ENSPSMG00000010996)	API5 (ENSPSMG00000011122) #15	TTC17 (ENSPSMG00000011324) #16	HSD17B12 (ENSPSMG00000011395) #17	ALKBH3 (ENSPSMG00000011436) #18	C11orf96 (ENSPSMG00000011448) #19	ACCSL (ENSPSMG00000011452) #20	ACCS (ENSPSMG00000011499) #21	EXT2 (ENSPSMG00000011571) #22	ALX4 (ENSPSMG00000011596) #23	CD82 (ENSPSMG00000011626) #24	TSPAN18 (ENSPSMG00000011657) #25	TP53I11 (ENSPSMG00000011679) #26	PRDM11 (ENSPSMG00000011702) #27	SYT13 (ENSPSMG00000011718) #28	CHST1 (ENSPSMG00000011726) #29	ENSPSMG00000011737 #30	CRY2 (ENSPSMG00000011764) #31	MAPK8IP1 (ENSPSMG00000011822) #32	FREY1 (ENSPSMG00000011844) #33	PEX16 (ENSPSMG00000011863) #34	LARGE2 (ENSPSMG00000011890) #35	PHF21A (ENSPSMG00000012023) #36	ENSPSMG00000012083
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Tree shrew	MODERN SPECIES	5254														ACCSL (ENSTBEG00000016623) #20	ACCS (ENSTBEG00000016687) #21	EXT2 (ENSTBEG00000016744) #22
Glires	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT01100000264486
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT01100000264486
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00550000074784.a.b	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Chinese hamster chok1gshd	MODERN SPECIES	188	Rag1 (ENSCGRG00001002046) #11	Rag2 (ENSCGRG00001011151) #12	Iftap (ENSCGRG00001020974) #13	ENSCGRG00001003416	ENSCGRG00001002351	ENSCGRG00001011370	Lrrc4c (ENSCGRG00001011183) #14	ENSCGRG00001022153	ENSCGRG00001002994	ENSCGRG00001023209 #15	Ttc17 (ENSCGRG00001008891) #16	Hsd17b12 (ENSCGRG00001024805) #17	Alkbh3 (ENSCGRG00001014489) #18	Gm13889 (ENSCGRG00001015067) #19	Accs (ENSCGRG00001017403) #21	Ext2 (ENSCGRG00001018610) #22	Alx4 (ENSCGRG00001013158) #23	Cd82 (ENSCGRG00001014213) #24	Tspan18 (ENSCGRG00001014966) #25	Trp53i11 (ENSCGRG00001015881) #26	ENSCGRG00001016971 #27	Syt13 (ENSCGRG00001017740) #28	Chst1 (ENSCGRG00001010952) #29	Slc35c1 (ENSCGRG00001019726) #30	Cry2 (ENSCGRG00001020400) #31	Mapk8ip1 (ENSCGRG00001016399) #32	Frey1 (ENSCGRG00001017596) #33	Pex16 (ENSCGRG00001024899) #34	Large2 (ENSCGRG00001001247) #35	Phf21a (ENSCGRG00001007974) #36	Creb3l1 (ENSCGRG00001011598) #37
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000010163	Ldlrad3 (ENSMAUG00000009660) #7	Commd9 (ENSMAUG00000003287) #8	Prr5l (ENSMAUG00000004032) #9	Traf6 (ENSMAUG00000005756) #10	Rag1 (ENSMAUG00000010819) #11	Rag2 (ENSMAUG00000010934) #12	Iftap (ENSMAUG00000010224) #13	Lrrc4c (ENSMAUG00000008203) #14	ENSMAUG00000008950 #15	Ttc17 (ENSMAUG00000010822) #16	Hsd17b12 (ENSMAUG00000011836) #17	Alkbh3 (ENSMAUG00000009317) #18	ENSMAUG00000010918 #19	Accs (ENSMAUG00000007912) #21	Ext2 (ENSMAUG00000009741) #22	Alx4 (ENSMAUG00000002663) #23	Cd82 (ENSMAUG00000003346) #24	Tspan18 (ENSMAUG00000003687) #25	Trp53i11 (ENSMAUG00000010266) #26	ENSMAUG00000010059 #27	Syt13 (ENSMAUG00000013295) #28	Chst1 (ENSMAUG00000011799) #29	Cry2 (ENSMAUG00000004486) #31	Mapk8ip1 (ENSMAUG00000005802) #32	Frey1 (ENSMAUG00000006630) #33	Pex16 (ENSMAUG00000011878) #34	Large2 (ENSMAUG00000008548) #35	Phf21a (ENSMAUG00000011351) #36	Creb3l1 (ENSMAUG00000003224) #37	Dgkz (ENSMAUG00000008433)
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Prairie vole	MODERN SPECIES	81	Rag1 (ENSMOCG00000008467) #11	Rag2 (ENSMOCG00000011926) #12	Iftap (ENSMOCG00000016114) #13	ENSMOCG00000001289	ENSMOCG00000016731	ENSMOCG00000016690	Lrrc4c (ENSMOCG00000005308) #14	ENSMOCG00000017344	Api5 (ENSMOCG00000021910) #15	Ttc17 (ENSMOCG00000001736) #16	Hsd17b12 (ENSMOCG00000007308) #17	Alkbh3 (ENSMOCG00000012816) #18	ENSMOCG00000010059 #19	Accsl (ENSMOCG00000009949) #20	Accs (ENSMOCG00000015335) #21	Ext2 (ENSMOCG00000018938) #22	Alx4 (ENSMOCG00000004542) #23	Cd82 (ENSMOCG00000016145) #24	Tspan18 (ENSMOCG00000022221) #25	Trp53i11 (ENSMOCG00000022849) #26	ENSMOCG00000019982 #27	Syt13 (ENSMOCG00000013286) #28	Chst1 (ENSMOCG00000013785) #29	ENSMOCG00000015940	Slc35c1 (ENSMOCG00000000842) #30	ENSMOCG00000001841 #31	Mapk8ip1 (ENSMOCG00000007285) #32	Frey1 (ENSMOCG00000012907) #33	Pex16 (ENSMOCG00000015385) #34	Large2 (ENSMOCG00000004366) #35	Phf21a (ENSMOCG00000018126) #36
Northern American deer mouse	MODERN SPECIES	17	Prr5l (ENSPEMG00000014248) #9	Traf6 (ENSPEMG00000015556) #10	Rag1 (ENSPEMG00000018077) #11	Rag2 (ENSPEMG00000018407) #12	Iftap (ENSPEMG00000007125) #13	ENSPEMG00000028280	ENSPEMG00000025399	Lrrc4c (ENSPEMG00000012198) #14	ENSPEMG00000012394	Api5 (ENSPEMG00000019874) #15	Ttc17 (ENSPEMG00000019488) #16	Hsd17b12 (ENSPEMG00000019400) #17	Alkbh3 (ENSPEMG00000019372) #18	Gm13889 (ENSPEMG00000025209) #19	Accs (ENSPEMG00000016421) #21	Ext2 (ENSPEMG00000022691) #22	Alx4 (ENSPEMG00000022456) #23	Cd82 (ENSPEMG00000014649) #24	Tspan18 (ENSPEMG00000028780) #25	Trp53i11 (ENSPEMG00000028703) #26	ENSPEMG00000031347 #27	ENSPEMG00000025900	Syt13 (ENSPEMG00000000686) #28	Chst1 (ENSPEMG00000023266) #29	Slc35c1 (ENSPEMG00000027919) #30	Cry2 (ENSPEMG00000018313) #31	Mapk8ip1 (ENSPEMG00000019088) #32	Frey1 (ENSPEMG00000018435) #33	Pex16 (ENSPEMG00000008055) #34	Large2 (ENSPEMG00000013026) #35	Phf21a (ENSPEMG00000004446) #36
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Mus	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00940000157226.e #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Mus_A	ANCESTRAL SPECIES		ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00940000157226.e #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00940000157226.e #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Mouse	MODERN SPECIES	11	Commd9 (ENSMUSG00000027163) #8	Prr5l (ENSMUSG00000032841) #9	Traf6 (ENSMUSG00000027164) #10	Rag1 (ENSMUSG00000061311) #11	Rag2 (ENSMUSG00000032864) #12	Iftap (ENSMUSG00000027165) #13	Lrrc4c (ENSMUSG00000050587) #14	Api5 (ENSMUSG00000027193) #15	Ttc17 (ENSMUSG00000027194) #16	Hsd17b12 (ENSMUSG00000027195) #17	Alkbh3 (ENSMUSG00000040174) #18	Gm27027 (ENSMUSG00000098004)	Gm13889 (ENSMUSG00000087006) #19	Accsl (ENSMUSG00000075023) #20	Accs (ENSMUSG00000040272) #21	Ext2 (ENSMUSG00000027198) #22	Alx4 (ENSMUSG00000040310) #23	Cd82 (ENSMUSG00000027215) #24	Tspan18 (ENSMUSG00000027217) #25	Trp53i11 (ENSMUSG00000068735) #26	Prdm11 (ENSMUSG00000075028) #27	Syt13 (ENSMUSG00000027220) #28	Chst1 (ENSMUSG00000027221) #29	Slc35c1 (ENSMUSG00000049922) #30	Cry2 (ENSMUSG00000068742) #31	Mapk8ip1 (ENSMUSG00000027223) #32	Frey1 (ENSMUSG00000044916) #33	Pex16 (ENSMUSG00000027222) #34	Large2 (ENSMUSG00000040434) #35	Phf21a (ENSMUSG00000058318) #36	Creb3l1 (ENSMUSG00000027230) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226.f #18	ENSGT00940000157226.e #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00860000136063	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Steppe mouse	MODERN SPECIES	36										Api5 (ENSMSIG00000017696) #15	Ttc17 (ENSMSIG00000017737) #16	Hsd17b12 (ENSMSIG00000017936) #17	Alkbh3 (ENSMSIG00000017952) #18	Gm13889 (ENSMSIG00000018000) #19	Accsl (ENSMSIG00000018045) #20	Ext2 (ENSMSIG00000018155) #22	Alx4 (ENSMSIG00000018194) #23	ENSMSIG00000018210	ENSMSIG00000018226	Cd82 (ENSMSIG00000018232) #24	Tspan18 (ENSMSIG00000018260) #25	ENSMSIG00000018279 #26	Prdm11 (ENSMSIG00000018308) #27	ENSMSIG00000018406	Syt13 (ENSMSIG00000018415) #28	Chst1 (ENSMSIG00000018432) #29	ENSMSIG00000018438	Slc35c1 (ENSMSIG00000018455) #30	Cry2 (ENSMSIG00000018499) #31	Mapk8ip1 (ENSMSIG00000018534) #32	Frey1 (ENSMSIG00000018641) #33
spretus	MODERN SPECIES	11	Commd9 (MGP_SPRETEiJ_G0024915) #8	Prr5l (MGP_SPRETEiJ_G0024914) #9	Traf6 (MGP_SPRETEiJ_G0024913) #10	Rag1 (MGP_SPRETEiJ_G0024912) #11	Rag2 (MGP_SPRETEiJ_G0024911) #12	Iftap (MGP_SPRETEiJ_G0024910) #13	Lrrc4c (MGP_SPRETEiJ_G0024909) #14	Api5 (MGP_SPRETEiJ_G0024908) #15	Ttc17 (MGP_SPRETEiJ_G0024907) #16	Hsd17b12 (MGP_SPRETEiJ_G0024906) #17	Alkbh3 (MGP_SPRETEiJ_G0024905) #18	MGP_SPRETEiJ_G0024904 #18	Gm13889 (MGP_SPRETEiJ_G0024903) #19	Accsl (MGP_SPRETEiJ_G0024902) #20	Accs (MGP_SPRETEiJ_G0024901) #21	Ext2 (MGP_SPRETEiJ_G0024900) #22	Alx4 (MGP_SPRETEiJ_G0024899) #23	MGP_SPRETEiJ_G0024898	Cd82 (MGP_SPRETEiJ_G0024897) #24	Tspan18 (MGP_SPRETEiJ_G0024896) #25	Trp53i11 (MGP_SPRETEiJ_G0024895) #26	MGP_SPRETEiJ_G0024894 #27	Syt13 (MGP_SPRETEiJ_G0024893) #28	Chst1 (MGP_SPRETEiJ_G0024892) #29	Slc35c1 (MGP_SPRETEiJ_G0024891) #30	Cry2 (MGP_SPRETEiJ_G0024890) #31	Mapk8ip1 (MGP_SPRETEiJ_G0024889) #32	Frey1 (MGP_SPRETEiJ_G0024888) #33	Pex16 (MGP_SPRETEiJ_G0024887) #34	Large2 (MGP_SPRETEiJ_G0024886) #35	Phf21a (MGP_SPRETEiJ_G0024885) #36
Ryukyu mouse	MODERN SPECIES	11	Commd9 (MGP_CAROLIEiJ_G0024005) #8	Prr5l (MGP_CAROLIEiJ_G0024004) #9	Traf6 (MGP_CAROLIEiJ_G0024003) #10	Rag1 (MGP_CAROLIEiJ_G0024002) #11	Rag2 (MGP_CAROLIEiJ_G0024001) #12	Iftap (MGP_CAROLIEiJ_G0024000) #13	Lrrc4c (MGP_CAROLIEiJ_G0023999) #14	Api5 (MGP_CAROLIEiJ_G0023998) #15	Ttc17 (MGP_CAROLIEiJ_G0023997) #16	MGP_CAROLIEiJ_G0023996 #17	Alkbh3 (MGP_CAROLIEiJ_G0023995) #18	MGP_CAROLIEiJ_G0023994 #18	Gm13889 (MGP_CAROLIEiJ_G0023993) #19	MGP_CAROLIEiJ_G0023992 #20	Accs (MGP_CAROLIEiJ_G0023991) #21	Ext2 (MGP_CAROLIEiJ_G0023990) #22	Alx4 (MGP_CAROLIEiJ_G0023989) #23	MGP_CAROLIEiJ_G0023988	Cd82 (MGP_CAROLIEiJ_G0023987) #24	Tspan18 (MGP_CAROLIEiJ_G0023986) #25	MGP_CAROLIEiJ_G0023985 #26	MGP_CAROLIEiJ_G0023984 #27	Syt13 (MGP_CAROLIEiJ_G0023983) #28	Chst1 (MGP_CAROLIEiJ_G0023982) #29	Slc35c1 (MGP_CAROLIEiJ_G0023981) #30	Cry2 (MGP_CAROLIEiJ_G0023980) #31	Mapk8ip1 (MGP_CAROLIEiJ_G0023979) #32	Frey1 (MGP_CAROLIEiJ_G0023978) #33	Pex16 (MGP_CAROLIEiJ_G0023977) #34	Large2 (MGP_CAROLIEiJ_G0023976) #35	Phf21a (MGP_CAROLIEiJ_G0023975) #36
Shrew mouse	MODERN SPECIES	16	Commd9 (MGP_PahariEiJ_G0025441) #8	Prr5l (MGP_PahariEiJ_G0025440) #9	Traf6 (MGP_PahariEiJ_G0025439) #10	Rag1 (MGP_PahariEiJ_G0025438) #11	Rag2 (MGP_PahariEiJ_G0025437) #12	MGP_PahariEiJ_G0025436 #13	Lrrc4c (MGP_PahariEiJ_G0025435) #14	Api5 (MGP_PahariEiJ_G0025434) #15	Ttc17 (MGP_PahariEiJ_G0025433) #16	Hsd17b12 (MGP_PahariEiJ_G0025432) #17	Alkbh3 (MGP_PahariEiJ_G0025431) #18	MGP_PahariEiJ_G0025430 #18	Gm13889 (MGP_PahariEiJ_G0025429) #19	Accsl (MGP_PahariEiJ_G0025428) #20	Accs (MGP_PahariEiJ_G0025427) #21	Ext2 (MGP_PahariEiJ_G0025426) #22	Alx4 (MGP_PahariEiJ_G0025425) #23	MGP_PahariEiJ_G0025424	Cd82 (MGP_PahariEiJ_G0025423) #24	Tspan18 (MGP_PahariEiJ_G0025422) #25	Trp53i11 (MGP_PahariEiJ_G0025421) #26	MGP_PahariEiJ_G0025420 #27	Syt13 (MGP_PahariEiJ_G0025419) #28	Chst1 (MGP_PahariEiJ_G0025418) #29	Cry2 (MGP_PahariEiJ_G0025417) #31	Mapk8ip1 (MGP_PahariEiJ_G0025416) #32	Frey1 (MGP_PahariEiJ_G0025415) #33	Pex16 (MGP_PahariEiJ_G0025414) #34	Large2 (MGP_PahariEiJ_G0025413) #35	Phf21a (MGP_PahariEiJ_G0025412) #36	Creb3l1 (MGP_PahariEiJ_G0025411) #37
Rat	MODERN SPECIES	13	Rag1 (ENSRNOG00000004630) #11	Rag2 (ENSRNOG00000004623) #12	Iftap (ENSRNOG00000037567) #13	LOC499843 (ENSRNOG00000032177)	AABR07053065.1 (ENSRNOG00000004381)	Lrrc4c (ENSRNOG00000029798) #14	ENSRNOG00000066316	Api5 (ENSRNOG00000009689) #15	Ttc17 (ENSRNOG00000010495) #16	Timm23-ps8 (ENSRNOG00000032900)	Hsd17b12 (ENSRNOG00000009630) #17	Alkbh3 (ENSRNOG00000021678) #18	RGD1564664 (ENSRNOG00000055564) #19	Accsl (ENSRNOG00000042533) #20	Accs (ENSRNOG00000009199) #21	Ext2 (ENSRNOG00000008944) #22	Alx4 (ENSRNOG00000000008) #23	Cd82 (ENSRNOG00000000047) #24	Tspan18 (ENSRNOG00000008758) #25	Tp53i11 (ENSRNOG00000008738) #26	ENSRNOG00000068495	Prdm11 (ENSRNOG00000008674) #27	Syt13 (ENSRNOG00000008000) #28	Chst1 (ENSRNOG00000007989) #29	Slc35c1 (ENSRNOG00000007732) #30	Cry2 (ENSRNOG00000007478) #31	Mapk8ip1 (ENSRNOG00000058478) #32	Frey1 (ENSRNOG00000006884) #33	Pex16 (ENSRNOG00000006539) #34	Large2 (ENSRNOG00000006353) #35	Phf21a (ENSRNOG00000006063) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1714															Accs (ENSNGAG00000008263) #21	Ext2 (ENSNGAG00000013409) #22	Alx4 (ENSNGAG00000000011) #23	Cd82 (ENSNGAG00000000018) #24	Tspan18 (ENSNGAG00000016162) #25	Trp53i11 (ENSNGAG00000012429) #26	ENSNGAG00000018296 #27	Syt13 (ENSNGAG00000016681) #28	Chst1 (ENSNGAG00000011143) #29
Lesser Egyptian jerboa	MODERN SPECIES	62	ENSJJAG00000023954	Tll1 (ENSJJAG00000012213)	Cpe (ENSJJAG00000009087)	Msmo1 (ENSJJAG00000021536)	Klhl2 (ENSJJAG00000008522)	Asgr2 (ENSJJAG00000023464)	ENSJJAG00000009111	Slc16a11 (ENSJJAG00000016016)	Slc16a13 (ENSJJAG00000020350)	Bcl6b (ENSJJAG00000023524)	0610010K14Rik (ENSJJAG00000018786)	Rnasek (ENSJJAG00000018322)	Alox12 (ENSJJAG00000000399)	ENSJJAG00000008060	Pelp1 (ENSJJAG00000013033)	Ext2 (ENSJJAG00000003668) #22	Alx4 (ENSJJAG00000014358) #23	Cd82 (ENSJJAG00000010666) #24	Tspan18 (ENSJJAG00000009258) #25	Trp53i11 (ENSJJAG00000010306) #26	ENSJJAG00000020448 #27	Syt13 (ENSJJAG00000015391) #28	Chst1 (ENSJJAG00000009883) #29	Slc35c1 (ENSJJAG00000024143) #30	Cry2 (ENSJJAG00000023774) #31	Mapk8ip1 (ENSJJAG00000006389) #32	Frey1 (ENSJJAG00000020049) #33	Pex16 (ENSJJAG00000022973) #34	Large2 (ENSJJAG00000015799) #35	Phf21a (ENSJJAG00000016994) #36	Creb3l1 (ENSJJAG00000014152) #37
Kangaroo rat	MODERN SPECIES	444									ENSDORG00000029655	Api5 (ENSDORG00000003830) #15	Ttc17 (ENSDORG00000002398) #16	ENSDORG00000004834 #17	Alkbh3 (ENSDORG00000000083) #18	ENSDORG00000004336 #19	Accs (ENSDORG00000005063) #21	Ext2 (ENSDORG00000012848) #22	Alx4 (ENSDORG00000014002) #23	Cd82 (ENSDORG00000029810) #24	Tspan18 (ENSDORG00000004841) #25	Trp53i11 (ENSDORG00000024778) #26	ENSDORG00000029092 #27	Syt13 (ENSDORG00000005470) #28	Chst1 (ENSDORG00000025502) #29	Slc35c1 (ENSDORG00000027177) #30	Cry2 (ENSDORG00000015496) #31	Mapk8ip1 (ENSDORG00000015499) #32	Frey1 (ENSDORG00000024564) #33	Pex16 (ENSDORG00000015504) #34	Large2 (ENSDORG00000015507) #35	Phf21a (ENSDORG00000015508) #36	ENSDORG00000025559
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00440000034605	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991.p.a #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00940000155035.e.b	ENSGT00390000010991.o #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00940000155035.e.b	ENSGT00390000010991.o #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Long-tailed chinchilla	MODERN SPECIES	129	COMMD9 (ENSCLAG00000014761) #8	PRR5L (ENSCLAG00000015373) #9	TRAF6 (ENSCLAG00000015588) #10	RAG1 (ENSCLAG00000015510) #11	RAG2 (ENSCLAG00000016493) #12	IFTAP (ENSCLAG00000016504) #13	ENSCLAG00000017889	ENSCLAG00000013706	LRRC4C (ENSCLAG00000015479) #14	ENSCLAG00000015133	API5 (ENSCLAG00000013707) #15	TTC17 (ENSCLAG00000012857) #16	HSD17B12 (ENSCLAG00000016216) #17	ALKBH3 (ENSCLAG00000016579) #18	C11orf96 (ENSCLAG00000018096) #19	EXT2 (ENSCLAG00000014428) #22	ALX4 (ENSCLAG00000013928) #23	CD82 (ENSCLAG00000013557) #24	TSPAN18 (ENSCLAG00000013370) #25	TP53I11 (ENSCLAG00000013412) #26	PRDM11 (ENSCLAG00000015369) #27	SYT13 (ENSCLAG00000014302) #28	CHST1 (ENSCLAG00000013459) #29	SLC35C1 (ENSCLAG00000013258) #30	CRY2 (ENSCLAG00000014719) #31	ENSCLAG00000014881	MAPK8IP1 (ENSCLAG00000014552) #32	PEX16 (ENSCLAG00000013695) #34	LARGE2 (ENSCLAG00000014846) #35	PHF21A (ENSCLAG00000016632) #36	CREB3L1 (ENSCLAG00000013609) #37
Degu	MODERN SPECIES	59	RAG2 (ENSODEG00000020447) #12	IFTAP (ENSODEG00000016540) #13	ENSODEG00000020466	LRRC4C (ENSODEG00000020475) #14	ENSODEG00000020370	ENSODEG00000020406	ENSODEG00000016521	ENSODEG00000016280 #15	TTC17 (ENSODEG00000016728) #16	ENSODEG00000016649	HSD17B12 (ENSODEG00000016636) #17	ALKBH3 (ENSODEG00000017204) #18	C11orf96 (ENSODEG00000020497) #19	ENSODEG00000020538	ACCS (ENSODEG00000016512) #21	EXT2 (ENSODEG00000016764) #22	ALX4 (ENSODEG00000016139) #23	ENSODEG00000016065	ENSODEG00000020356	ENSODEG00000016115 #24	TSPAN18 (ENSODEG00000016609) #25	TP53I11 (ENSODEG00000016164) #26	ENSODEG00000015982	PRDM11 (ENSODEG00000016043) #27	SYT13 (ENSODEG00000016104) #28	CHST1 (ENSODEG00000020411) #29	SLC35C1 (ENSODEG00000016358) #30	CRY2 (ENSODEG00000016685) #31	MAPK8IP1 (ENSODEG00000016178) #32	FREY1 (ENSODEG00000016189) #33	PEX16 (ENSODEG00000016153) #34
Guinea pig	MODERN SPECIES	72								LRRC4C (ENSCPOG00000014997) #14	ENSCPOG00000025133	ENSCPOG00000011993 #15	TTC17 (ENSCPOG00000013524) #16	HSD17B12 (ENSCPOG00000031159) #17	ALKBH3 (ENSCPOG00000005138) #18	C11orf96 (ENSCPOG00000027092) #19	ACCS (ENSCPOG00000011925) #21	EXT2 (ENSCPOG00000011931) #22	ALX4 (ENSCPOG00000022496) #23	CD82 (ENSCPOG00000026415) #24	TSPAN18 (ENSCPOG00000001959) #25	TP53I11 (ENSCPOG00000038980) #26	PRDM11 (ENSCPOG00000019447) #27	SYT13 (ENSCPOG00000008033) #28	CHST1 (ENSCPOG00000037376) #29	SLC35C1 (ENSCPOG00000037302) #30	CRY2 (ENSCPOG00000001296) #31	MAPK8IP1 (ENSCPOG00000001298) #32	FREY1 (ENSCPOG00000032012) #33	PEX16 (ENSCPOG00000027497) #34	LARGE2 (ENSCPOG00000033339) #35	PHF21A (ENSCPOG00000001299) #36	CREB3L1 (ENSCPOG00000010073) #37
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Squirrel	MODERN SPECIES	162								API5 (ENSSTOG00000009298) #15	TTC17 (ENSSTOG00000009317) #16	HSD17B12 (ENSSTOG00000005473) #17	ALKBH3 (ENSSTOG00000006060) #18	C11orf96 (ENSSTOG00000030620) #19	ACCSL (ENSSTOG00000001158) #20	ENSSTOG00000033284 #21	ENSSTOG00000004449 #21	EXT2 (ENSSTOG00000004480) #22	ALX4 (ENSSTOG00000029078) #23	ENSSTOG00000023731 #24	TSPAN18 (ENSSTOG00000012343) #25	TP53I11 (ENSSTOG00000025635) #26	PRDM11 (ENSSTOG00000021186) #27	SYT13 (ENSSTOG00000004017) #28	CHST1 (ENSSTOG00000016359) #29	SLC35C1 (ENSSTOG00000022825) #30	CRY2 (ENSSTOG00000011521) #31	FREY1 (ENSSTOG00000027622) #33	MAPK8IP1 (ENSSTOG00000027362) #32	PEX16 (ENSSTOG00000011534) #34	LARGE2 (ENSSTOG00000011545) #35	PHF21A (ENSSTOG00000011552) #36	CREB3L1 (ENSSTOG00000012697) #37
Arctic ground squirrel	MODERN SPECIES	208																EXT2 (ENSUPAG00010008690) #22	ALX4 (ENSUPAG00010008717) #23	CD82 (ENSUPAG00010008728) #24	TSPAN18 (ENSUPAG00010008743) #25	TP53I11 (ENSUPAG00010008764) #26	ENSUPAG00010008787 #27	SYT13 (ENSUPAG00010008795) #28	CHST1 (ENSUPAG00010008807) #29	SLC35C1 (ENSUPAG00010008815) #30	CRY2 (ENSUPAG00010008829) #31	MAPK8IP1 (ENSUPAG00010008856) #32	FREY1 (ENSUPAG00010008915) #33	PEX16 (ENSUPAG00010008926) #34	LARGE2 (ENSUPAG00010008955) #35	PHF21A (ENSUPAG00010009105) #36	CREB3L1 (ENSUPAG00010010194) #37
Alpin marmot	MODERN SPECIES	3	PRR5L (ENSMMMG00000011238) #9	TRAF6 (ENSMMMG00000011285) #10	RAG1 (ENSMMMG00000011298) #11	RAG2 (ENSMMMG00000011304) #12	IFTAP (ENSMMMG00000011311) #13	LRRC4C (ENSMMMG00000011362) #14	API5 (ENSMMMG00000011483) #15	TTC17 (ENSMMMG00000011550) #16	HSD17B12 (ENSMMMG00000011610) #17	ENSMMMG00000011626	ALKBH3 (ENSMMMG00000011630) #18	C11orf96 (ENSMMMG00000011645) #19	ACCSL (ENSMMMG00000011649) #20	ENSMMMG00000011721	ACCS (ENSMMMG00000011728) #21	EXT2 (ENSMMMG00000011786) #22	ALX4 (ENSMMMG00000011816) #23	ENSMMMG00000011823	TSPAN18 (ENSMMMG00000011835) #25	TP53I11 (ENSMMMG00000011860) #26	PRDM11 (ENSMMMG00000011883) #27	SYT13 (ENSMMMG00000011892) #28	CHST1 (ENSMMMG00000011917) #29	SLC35C1 (ENSMMMG00000011928) #30	CRY2 (ENSMMMG00000011931) #31	MAPK8IP1 (ENSMMMG00000011982) #32	FREY1 (ENSMMMG00000012302) #33	PEX16 (ENSMMMG00000012310) #34	LARGE2 (ENSMMMG00000012317) #35	PHF21A (ENSMMMG00000012404) #36	CREB3L1 (ENSMMMG00000013137) #37
Eurasian red squirrel	MODERN SPECIES	2	PRR5L (ENSSVLG00005019340) #9	TRAF6 (ENSSVLG00005019219) #10	RAG1 (ENSSVLG00005019195) #11	RAG2 (ENSSVLG00005019171) #12	ENSSVLG00005019047 #13	ENSSVLG00005019010	LRRC4C (ENSSVLG00005018979) #14	ENSSVLG00005018298 #15	TTC17 (ENSSVLG00005018176) #16	ENSSVLG00005018129	HSD17B12 (ENSSVLG00005018072) #17	ALKBH3 (ENSSVLG00005018027) #18	C11orf96 (ENSSVLG00005018003) #19	ACCSL (ENSSVLG00005017862) #20	ACCS (ENSSVLG00005017673) #21	EXT2 (ENSSVLG00005017472) #22	ALX4 (ENSSVLG00005017428) #23	ENSSVLG00005017405	CD82 (ENSSVLG00005017346) #24	TSPAN18 (ENSSVLG00005017248) #25	TP53I11 (ENSSVLG00005017174) #26	PRDM11 (ENSSVLG00005017126) #27	SYT13 (ENSSVLG00005017054) #28	CHST1 (ENSSVLG00005017036) #29	SLC35C1 (ENSSVLG00005016968) #30	CRY2 (ENSSVLG00005016727) #31	MAPK8IP1 (ENSSVLG00005016511) #32	FREY1 (ENSSVLG00005016461) #33	PEX16 (ENSSVLG00005016392) #34	LARGE2 (ENSSVLG00005016132) #35	PHF21A (ENSSVLG00005016012) #36
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37	ENSGT00940000156152
Pika	MODERN SPECIES	2107											HSD17B12 (ENSOPRG00000006761) #17	ALKBH3 (ENSOPRG00000006771) #18	C11orf96 (ENSOPRG00000006787) #19	ENSOPRG00000006805 #20	ACCS (ENSOPRG00000006821) #21	EXT2 (ENSOPRG00000006838) #22	ALX4 (ENSOPRG00000006865) #23
Rabbit	MODERN SPECIES		ENSOCUG00000031380	ENSOCUG00000028119	LRRC4C (ENSOCUG00000017587) #14	ENSOCUG00000027982	ENSOCUG00000026202	ENSOCUG00000022894	ENSOCUG00000029420	ENSOCUG00000021849	ENSOCUG00000024568	API5 (ENSOCUG00000034334) #15	TTC17 (ENSOCUG00000014674) #16	HSD17B12 (ENSOCUG00000016351) #17	ALKBH3 (ENSOCUG00000016359) #18	C11orf96 (ENSOCUG00000021313) #19	ACCSL (ENSOCUG00000007146) #20	EXT2 (ENSOCUG00000007361) #22	ALX4 (ENSOCUG00000007369) #23	CD82 (ENSOCUG00000000861) #24	ENSOCUG00000023681 #25	TP53I11 (ENSOCUG00000001307) #26	PRDM11 (ENSOCUG00000027797) #27	SYT13 (ENSOCUG00000005321) #28	CHST1 (ENSOCUG00000006596) #29	SLC35C1 (ENSOCUG00000015335) #30	CRY2 (ENSOCUG00000025433) #31	ENSOCUG00000023020 #32	PEX16 (ENSOCUG00000001670) #34	LARGE2 (ENSOCUG00000001671) #35	PHF21A (ENSOCUG00000001675) #36	CREB3L1 (ENSOCUG00000004418) #37	ENSOCUG00000024752
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156620 #22
Hedgehog	MODERN SPECIES	4657																EXT2 (ENSEEUG00000011600) #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Ursidae	ANCESTRAL SPECIES	2	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Ursus	ANCESTRAL SPECIES	85							ENSGT00390000010991 #15	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.b	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000169558	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Polar bear	MODERN SPECIES	229						LRRC4C (ENSUMAG00000015809) #14	ENSUMAG00000015788	API5 (ENSUMAG00000015677) #15	ENSUMAG00000015652	TTC17 (ENSUMAG00000015633) #16	HSD17B12 (ENSUMAG00000015611) #17	ALKBH3 (ENSUMAG00000015602) #18	ENSUMAG00000015598	ENSUMAG00000015568 #20	ACCS (ENSUMAG00000015553) #21	EXT2 (ENSUMAG00000015542) #22	ENSUMAG00000015538	ENSUMAG00000015524	CD82 (ENSUMAG00000015516) #24	TSPAN18 (ENSUMAG00000015509) #25	TP53I11 (ENSUMAG00000015491) #26	PRDM11 (ENSUMAG00000015467) #27	SYT13 (ENSUMAG00000015449) #28	CHST1 (ENSUMAG00000015445) #29	SLC35C1 (ENSUMAG00000015429) #30	CRY2 (ENSUMAG00000015407) #31	PEX16 (ENSUMAG00000015365) #34	LARGE2 (ENSUMAG00000015352) #35	PHF21A (ENSUMAG00000015340) #36	CREB3L1 (ENSUMAG00000015322) #37	DGKZ (ENSUMAG00000014597)
American black bear	MODERN SPECIES	1122														ACCSL (ENSUAMG00000006113) #20	ACCS (ENSUAMG00000006128) #21	EXT2 (ENSUAMG00000006132) #22	ALX4 (ENSUAMG00000006136) #23
Giant Panda	MODERN SPECIES	7	TRIM44 (ENSAMEG00000030107)	LDLRAD3 (ENSAMEG00000013817) #7	COMMD9 (ENSAMEG00000013820) #8	PRR5L (ENSAMEG00000013834) #9	TRAF6 (ENSAMEG00000013844) #10	RAG1 (ENSAMEG00000019378) #11	RAG2 (ENSAMEG00000019398) #12	IFTAP (ENSAMEG00000013857) #13	ENSAMEG00000029325	LRRC4C (ENSAMEG00000018951) #14	API5 (ENSAMEG00000011377) #15	TTC17 (ENSAMEG00000011414) #16	HSD17B12 (ENSAMEG00000004853) #17	ALKBH3 (ENSAMEG00000004842) #18	ACCSL (ENSAMEG00000004827) #20	EXT2 (ENSAMEG00000004795) #22	ALX4 (ENSAMEG00000027276) #23	CD82 (ENSAMEG00000009274) #24	TSPAN18 (ENSAMEG00000000765) #25	TP53I11 (ENSAMEG00000000751) #26	ENSAMEG00000024608 #26	PRDM11 (ENSAMEG00000000745) #27	SYT13 (ENSAMEG00000024139) #28	CHST1 (ENSAMEG00000018807) #29	SLC35C1 (ENSAMEG00000026256) #30	CRY2 (ENSAMEG00000000688) #31	MAPK8IP1 (ENSAMEG00000000657) #32	FREY1 (ENSAMEG00000000654) #33	PEX16 (ENSAMEG00000000638) #34	LARGE2 (ENSAMEG00000000610) #35	PHF21A (ENSAMEG00000000598) #36
Mustelinae	ANCESTRAL SPECIES	74								ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
American mink	MODERN SPECIES	45							ENSNVIG00000013863	LRC4C (ENSNVIG00000013846) #14	API5 (ENSNVIG00000013744) #15	TTC17 (ENSNVIG00000013621) #16	HSD17B12 (ENSNVIG00000013534) #17	ALKBH3 (ENSNVIG00000013523) #18	C11orf96 (ENSNVIG00000013521) #19	ACCSL (ENSNVIG00000013497) #20	ACCS (ENSNVIG00000013477) #21	EXT2 (ENSNVIG00000013441) #22	ALX4 (ENSNVIG00000013421) #23	ENSNVIG00000013407	CD82 (ENSNVIG00000013361) #24	ENSNVIG00000013354	TSPAN18 (ENSNVIG00000013342) #25	P5I11 (ENSNVIG00000013330) #26	PRDM11 (ENSNVIG00000013288) #27	SYT13 (ENSNVIG00000013272) #28	CHST1 (ENSNVIG00000013259) #29	FUCT1 (ENSNVIG00000013223) #30	CRY2 (ENSNVIG00000013168) #31	MAPK8IP1 (ENSNVIG00000013121) #32	FREY1 (ENSNVIG00000013108) #33	PEX16 (ENSNVIG00000013046) #34	LARGE2 (ENSNVIG00000013006) #35
Ferret	MODERN SPECIES	255									LRRC4C (ENSMPUG00000018442) #14	API5 (ENSMPUG00000006174) #15	TTC17 (ENSMPUG00000006164) #16	HSD17B12 (ENSMPUG00000006159) #17	ALKBH3 (ENSMPUG00000006151) #18	ACCSL (ENSMPUG00000006138) #20	ACCS (ENSMPUG00000006124) #21	EXT2 (ENSMPUG00000006112) #22	ALX4 (ENSMPUG00000006095) #23	CD82 (ENSMPUG00000006084) #24	TP53I11 (ENSMPUG00000006042) #26	TSPAN18 (ENSMPUG00000006031) #25	ENSMPUG00000006027	ENSMPUG00000006019 #27	ENSMPUG00000006010	ENSMPUG00000005998 #28	ENSMPUG00000005991	CHST1 (ENSMPUG00000018441) #29	SLC35C1 (ENSMPUG00000005984) #30	CRY2 (ENSMPUG00000005785) #31	MAPK8IP1 (ENSMPUG00000005682) #32	PEX16 (ENSMPUG00000005672) #34	LARGE2 (ENSMPUG00000005660) #35
Canidae	ANCESTRAL SPECIES	13	ENSGT00390000013104	ENSGT00940000162219	ENSGT00940000156076.a.a.b	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760	ENSGT00440000033504.A	ENSGT00940000160155	ENSGT00550000074828.a.h	ENSGT00940000161780	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00390000013104	ENSGT00940000162219	ENSGT00940000156076.a.a.b	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760	ENSGT00440000033504.A	ENSGT00940000160155	ENSGT00550000074828.a.h	ENSGT00940000161780	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Dog	MODERN SPECIES	9	ENSCAFG00845008318	ENSCAFG00845008259	ENSCAFG00845008123	ENSCAFG00845008048	MUC2 (ENSCAFG00845007971)	ENSCAFG00845007587	AP2A2 (ENSCAFG00845007202)	CHID1 (ENSCAFG00845007048)	TSPAN4 (ENSCAFG00845006877)	CHID1 (ENSCAFG00845006784)	CD151 (ENSCAFG00845006743)	CRACR2B (ENSCAFG00845006671)	PNPLA2 (ENSCAFG00845006576)	ENSCAFG00845006496	ENSCAFG00845006388	EXT2 (ENSCAFG00845006136) #22	ALX4 (ENSCAFG00845006003) #23	CD82 (ENSCAFG00845005975) #24	TSPAN18 (ENSCAFG00845005948) #25	TP53I11 (ENSCAFG00845005919) #26	PRDM11 (ENSCAFG00845029718) #27	SYT13 (ENSCAFG00845029683) #28	CHST1 (ENSCAFG00845029662) #29	SLC35C1 (ENSCAFG00845029632) #30	CRY2 (ENSCAFG00845029583) #31	MAPK8IP1 (ENSCAFG00845029426) #32	C18H11orf94 (ENSCAFG00845029379) #33	PEX16 (ENSCAFG00845029302) #34	LARGE2 (ENSCAFG00845029215) #35	PHF21A (ENSCAFG00845029086) #36	CREB3L1 (ENSCAFG00845028997) #37
Dingo	MODERN SPECIES	69	TOLLIP (ENSCAFG00020017534)	ENSCAFG00020017539	ENSCAFG00020017550	MUC2 (ENSCAFG00020017580)	ENSCAFG00020017595	AP2A2 (ENSCAFG00020017611)	CHID1 (ENSCAFG00020017617)	TSPAN4 (ENSCAFG00020017618)	POLR2L (ENSCAFG00020017621)	CD151 (ENSCAFG00020017622)	ENSCAFG00020017624	PNPLA2 (ENSCAFG00020017628)	ENSCAFG00020017684	PIDD1 (ENSCAFG00020017688)	ACCS (ENSCAFG00020017697) #21	EXT2 (ENSCAFG00020017760) #22	ALX4 (ENSCAFG00020017762) #23	CD82 (ENSCAFG00020017766) #24	TSPAN18 (ENSCAFG00020017771) #25	TP53I11 (ENSCAFG00020017772) #26	PRDM11 (ENSCAFG00020017777) #27	SYT13 (ENSCAFG00020017779) #28	CHST1 (ENSCAFG00020017785) #29	SLC35C1 (ENSCAFG00020017788) #30	CRY2 (ENSCAFG00020017805) #31	MAPK8IP1 (ENSCAFG00020018475) #32	PEX16 (ENSCAFG00020018482) #34	LARGE2 (ENSCAFG00020018489) #35	PHF21A (ENSCAFG00020018990) #36	CREB3L1 (ENSCAFG00020019008) #37	DGKZ (ENSCAFG00020019055)
Red fox	MODERN SPECIES	49	BRSK2 (ENSVVUG00000002149)	TOLLIP (ENSVVUG00000002119)	ENSVVUG00000001833	ENSVVUG00000001468	ENSVVUG00000000878	ENSVVUG00000000617	AP2A2 (ENSVVUG00000000592)	CHID1 (ENSVVUG00000000574)	TSPAN4 (ENSVVUG00000000266)	POLR2L (ENSVVUG00000000205)	CD151 (ENSVVUG00000000184)	CRACR2B (ENSVVUG00000000162)	PNPLA2 (ENSVVUG00000000122)	PIDD1 (ENSVVUG00000000083)	ACCS (ENSVVUG00000000057) #21	EXT2 (ENSVVUG00000027292) #22	ALX4 (ENSVVUG00000027285) #23	CD82 (ENSVVUG00000027274) #24	TSPAN18 (ENSVVUG00000027267) #25	TP53I11 (ENSVVUG00000027262) #26	PRDM11 (ENSVVUG00000027249) #27	SYT13 (ENSVVUG00000027243) #28	CHST1 (ENSVVUG00000027239) #29	SLC35C1 (ENSVVUG00000027235) #30	CRY2 (ENSVVUG00000027229) #31	MAPK8IP1 (ENSVVUG00000027198) #32	PEX16 (ENSVVUG00000027196) #34	LARGE2 (ENSVVUG00000027012) #35	PHF21A (ENSVVUG00000026999) #36	CREB3L1 (ENSVVUG00000026984) #37	DGKZ (ENSVVUG00000026981)
Felidae	ANCESTRAL SPECIES		ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT01080000258056	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT01020000230401.a.a.a.i.b	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Panthera	ANCESTRAL SPECIES	13	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT01080000258056	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT01020000230401.a.a.a.i.b	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT01080000258056	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT01020000230401.a.a.a.i.b	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
leopard	MODERN SPECIES	58	COMMD9 (ENSPPRG00000019409) #8	PRR5L (ENSPPRG00000016644) #9	TRAF6 (ENSPPRG00000014400) #10	RAG1 (ENSPPRG00000014408) #11	RAG2 (ENSPPRG00000014398) #12	IFTAP (ENSPPRG00000011787) #13	ENSPPRG00000010539	LRRC4C (ENSPPRG00000014339) #14	API5 (ENSPPRG00000009130) #15	TTC17 (ENSPPRG00000007478) #16	HSD17B12 (ENSPPRG00000006417) #17	ALKBH3 (ENSPPRG00000005278) #18	C11orf96 (ENSPPRG00000014216) #19	ACCSL (ENSPPRG00000005058) #20	ACCS (ENSPPRG00000004897) #21	EXT2 (ENSPPRG00000004504) #22	ALX4 (ENSPPRG00000001680) #23	ENSPPRG00000000608	CD82 (ENSPPRG00000000435) #24	TSPAN18 (ENSPPRG00000023207) #25	TP53I11 (ENSPPRG00000023362) #26	PRDM11 (ENSPPRG00000024084) #27	SYT13 (ENSPPRG00000017141) #28	CHST1 (ENSPPRG00000022251) #29	ENSPPRG00000016519	ENSPPRG00000016136	SLC35C1 (ENSPPRG00000015807) #30	CRY2 (ENSPPRG00000013303) #31	MAPK8IP1 (ENSPPRG00000011063) #32	FREY1 (ENSPPRG00000010618) #33	PEX16 (ENSPPRG00000010501) #34
lion	MODERN SPECIES	10	COMMD9 (ENSPLOG00000008326) #8	PRR5L (ENSPLOG00000008389) #9	TRAF6 (ENSPLOG00000008425) #10	RAG1 (ENSPLOG00000008443) #11	RAG2 (ENSPLOG00000008456) #12	ENSPLOG00000008466 #13	ENSPLOG00000008507	LRRC4C (ENSPLOG00000008513) #14	API5 (ENSPLOG00000008595) #15	TTC17 (ENSPLOG00000008790) #16	HSD17B12 (ENSPLOG00000008903) #17	ALKBH3 (ENSPLOG00000009033) #18	C11orf96 (ENSPLOG00000009053) #19	ACCSL (ENSPLOG00000009077) #20	ACCS (ENSPLOG00000009169) #21	EXT2 (ENSPLOG00000009265) #22	ALX4 (ENSPLOG00000009372) #23	CD82 (ENSPLOG00000009416) #24	TSPAN18 (ENSPLOG00000009462) #25	TP53I11 (ENSPLOG00000009507) #26	PRDM11 (ENSPLOG00000009558) #27	SYT13 (ENSPLOG00000009590) #28	CHST1 (ENSPLOG00000009626) #29	OTUB1 (ENSPLOG00000009639)	SLC35C1 (ENSPLOG00000009663) #30	CRY2 (ENSPLOG00000009691) #31	MAPK8IP1 (ENSPLOG00000009776) #32	FREY1 (ENSPLOG00000009880) #33	PEX16 (ENSPLOG00000009908) #34	PHF21A (ENSPLOG00000010070) #36	CREB3L1 (ENSPLOG00000004966) #37
Tiger	MODERN SPECIES	167	PAMR1 (ENSPTIG00000014525)	TRIM44 (ENSPTIG00000015209)	LDLRAD3 (ENSPTIG00000015733) #7	COMMD9 (ENSPTIG00000015891) #8	PRR5L (ENSPTIG00000016288) #9	TRAF6 (ENSPTIG00000016499) #10	RAG1 (ENSPTIG00000010538) #11	RAG2 (ENSPTIG00000010550) #12	IFTAP (ENSPTIG00000016603) #13	API5 (ENSPTIG00000016928) #15	TTC17 (ENSPTIG00000018326) #16	HSD17B12 (ENSPTIG00000019106) #17	ALKBH3 (ENSPTIG00000019393) #18	ACCSL (ENSPTIG00000019690) #20	ACCS (ENSPTIG00000019737) #21	EXT2 (ENSPTIG00000019939) #22	ALX4 (ENSPTIG00000020743) #23	CD82 (ENSPTIG00000001923) #24	TSPAN18 (ENSPTIG00000005160) #25	TP53I11 (ENSPTIG00000005398) #26	PRDM11 (ENSPTIG00000006200) #27	SYT13 (ENSPTIG00000007185) #28
Cat	MODERN SPECIES	241	PAMR1 (ENSFCAG00000005892)	FJX1 (ENSFCAG00000046575)	TRIM44 (ENSFCAG00000025850)	LDLRAD3 (ENSFCAG00000040060) #7	COMMD9 (ENSFCAG00000038308) #8	PRR5L (ENSFCAG00000028983) #9	TRAF6 (ENSFCAG00000036371) #10	RAG2 (ENSFCAG00000002909) #12	CD1H11orf74 (ENSFCAG00000039567) #13	ENSFCAG00000030215	LRRC4C (ENSFCAG00000027958) #14	API5 (ENSFCAG00000031994) #15	TTC17 (ENSFCAG00000023058) #16	HSD17B12 (ENSFCAG00000022122) #17	ACCSL (ENSFCAG00000005617) #20	EXT2 (ENSFCAG00000005619) #22	ALX4 (ENSFCAG00000005620) #23	ENSFCAG00000035141	CD82 (ENSFCAG00000012861) #24	TSPAN18 (ENSFCAG00000004186) #25	TP53I11 (ENSFCAG00000044947) #26	PRDM11 (ENSFCAG00000006658) #27	SYT13 (ENSFCAG00000030929) #28	CHST1 (ENSFCAG00000006661) #29	SLC35C1 (ENSFCAG00000026308) #30	CRY2 (ENSFCAG00000003188) #31	MAPK8IP1 (ENSFCAG00000003189) #32	FREY1 (ENSFCAG00000041581) #33	PEX16 (ENSFCAG00000003190) #34	LARGE2 (ENSFCAG00000021941) #35	PHF21A (ENSFCAG00000027311) #36
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Equus	ANCESTRAL SPECIES	56	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Horse	MODERN SPECIES	3	COMMD9 (ENSECAG00000019749) #8	PRR5L (ENSECAG00000020162) #9	TRAF6 (ENSECAG00000021091) #10	RAG1 (ENSECAG00000021936) #11	RAG2 (ENSECAG00000021988) #12	IFTAP (ENSECAG00000022013) #13	LRRC4C (ENSECAG00000022329) #14	ENSECAG00000002481	API5 (ENSECAG00000047216) #15	TTC17 (ENSECAG00000000753) #16	ENSECAG00000057228	HSD17B12 (ENSECAG00000010538) #17	ALKBH3 (ENSECAG00000010673) #18	ACCSL (ENSECAG00000011908) #20	ACCS (ENSECAG00000013484) #21	EXT2 (ENSECAG00000015881) #22	ALX4 (ENSECAG00000019892) #23	CD82 (ENSECAG00000020051) #24	TP53I11 (ENSECAG00000023101) #26	PRDM11 (ENSECAG00000023612) #27	SYT13 (ENSECAG00000023889) #28	CHST1 (ENSECAG00000024106) #29	SLC35C1 (ENSECAG00000000770) #31	MAPK8IP1 (ENSECAG00000007619) #32	PEX16 (ENSECAG00000011531) #34	LARGE2 (ENSECAG00000014596) #35	PHF21A (ENSECAG00000017082) #36	CREB3L1 (ENSECAG00000018306) #37	DGKZ (ENSECAG00000018796)	ENSECAG00000029071	CHRM4 (ENSECAG00000023751)
Donkey	MODERN SPECIES	8	COMMD9 (ENSEASG00005013520) #8	PRR5L (ENSEASG00005013530) #9	TRAF6 (ENSEASG00005033142) #10	RAG1 (ENSEASG00005013538) #11	RAG2 (ENSEASG00005013540) #12	IFTAP (ENSEASG00005013541) #13	LRRC4C (ENSEASG00005014797) #14	ENSEASG00005014801	API5 (ENSEASG00005014816) #15	TTC17 (ENSEASG00005014829) #16	HSD17B12 (ENSEASG00005014853) #17	ALKBH3 (ENSEASG00005014856) #18	C11orf96 (ENSEASG00005014860) #19	ACCSL (ENSEASG00005014863) #20	ACCS (ENSEASG00005014868) #21	EXT2 (ENSEASG00005014877) #22	ALX4 (ENSEASG00005014886) #23	CD82 (ENSEASG00005014890) #24	TSPAN18 (ENSEASG00005026170) #25	ENSEASG00005024242 #26	PRDM11 (ENSEASG00005014907) #27	SYT13 (ENSEASG00005014911) #28	CHST1 (ENSEASG00005014919) #29	SLC35C1 (ENSEASG00005014922) #30	CRY2 (ENSEASG00005014923) #31	MAPK8IP1 (ENSEASG00005014927) #32	FREY1 (ENSEASG00005030976) #33	PEX16 (ENSEASG00005014929) #34	LARGE2 (ENSEASG00005014935) #35	PHF21A (ENSEASG00005014943) #36	CREB3L1 (ENSEASG00005014953) #37
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00520000059086	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010004464	IFTAP (ENSRFEG00010004417) #13	ENSRFEG00010004383	ENSRFEG00010004372	ENSRFEG00010004357	LRRC4C (ENSRFEG00010004345) #14	ENSRFEG00010004319	ENSRFEG00010004309	API5 (ENSRFEG00010004247) #15	TTC17 (ENSRFEG00010004131) #16	HSD17B12 (ENSRFEG00010004074) #17	ALKBH3 (ENSRFEG00010004046) #18	C11orf96 (ENSRFEG00010004030) #19	ACCSL (ENSRFEG00010004009) #20	ACCS (ENSRFEG00010003969) #21	EXT2 (ENSRFEG00010003919) #22	ALX4 (ENSRFEG00010003877) #23	CD82 (ENSRFEG00010003839) #24	TSPAN18 (ENSRFEG00010003813) #25	TP53I11 (ENSRFEG00010003790) #26	PRDM11 (ENSRFEG00010003762) #27	SYT13 (ENSRFEG00010003732) #28	CHST1 (ENSRFEG00010003717) #29	SLC35C1 (ENSRFEG00010003706) #30	CRY2 (ENSRFEG00010003641) #31	MAPK8IP1 (ENSRFEG00010003534) #32	FREY1 (ENSRFEG00010003489) #33	PEX16 (ENSRFEG00010003462) #34	LARGE2 (ENSRFEG00010003418) #35	PHF21A (ENSRFEG00010003386) #36	CREB3L1 (ENSRFEG00010003317) #37
Microbat	MODERN SPECIES	1150					ENSMLUG00000025321	ENSMLUG00000027385	ENSMLUG00000026246	ENSMLUG00000013546 #15	TTC17 (ENSMLUG00000013560) #16	ENSMLUG00000025455	HSD17B12 (ENSMLUG00000002890) #17	ALKBH3 (ENSMLUG00000029289) #18	C11orf96 (ENSMLUG00000008003) #19	ACCSL (ENSMLUG00000005151) #20	ACCS (ENSMLUG00000005157) #21	EXT2 (ENSMLUG00000008303) #22	ALX4 (ENSMLUG00000008344) #23	CD82 (ENSMLUG00000004271) #24	TSPAN18 (ENSMLUG00000001033) #25	TP53I11 (ENSMLUG00000029195) #26
Megabat	MODERN SPECIES	6365																EXT2 (ENSPVAG00000002129) #22	ALX4 (ENSPVAG00000002128) #23
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Suina	ANCESTRAL SPECIES	34	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Pig	DUPLICATION
Pig	MODERN SPECIES	10	PRR5L (ENSSSCG00000013292) #9	TRAF6 (ENSSSCG00000038082) #10	RAG1 (ENSSSCG00000026145) #11	RAG2 (ENSSSCG00000034285) #12	IFTAP (ENSSSCG00000035489) #13	ENSSSCG00000044221	ENSSSCG00000048619	LRRC4C (ENSSSCG00000013286) #14	ENSSSCG00000049087	API5 (ENSSSCG00000013285) #15	TTC17 (ENSSSCG00000013284) #16	HSD17B12 (ENSSSCG00000021739) #17	ALKBH3 (ENSSSCG00000040937) #18	ACCSL (ENSSSCG00000057793) #20	ACCS (ENSSSCG00000013282) #21	ENSSSCG00000013281 #22	ENSSSCG00000061941 #22	ALX4 (ENSSSCG00000040329) #23	CD82 (ENSSSCG00000029521) #24	TSPAN18 (ENSSSCG00000013278) #25	TP53I11 (ENSSSCG00000031819) #26	PRDM11 (ENSSSCG00000013276) #27	SYT13 (ENSSSCG00000031590) #28	CHST1 (ENSSSCG00000013273) #29	SLC35C1 (ENSSSCG00000025647) #30	CRY2 (ENSSSCG00000013270) #31	MAPK8IP1 (ENSSSCG00000013269) #32	FREY1 (ENSSSCG00000056689) #33	PEX16 (ENSSSCG00000013267) #34	LARGE2 (ENSSSCG00000013266) #35	ENSSSCG00000049982
Pig	MODERN SPECIES	10	TRAF6 (ENSSSCG00000038082) #10	RAG1 (ENSSSCG00000026145) #11	RAG2 (ENSSSCG00000034285) #12	IFTAP (ENSSSCG00000035489) #13	ENSSSCG00000044221	ENSSSCG00000048619	LRRC4C (ENSSSCG00000013286) #14	ENSSSCG00000049087	API5 (ENSSSCG00000013285) #15	TTC17 (ENSSSCG00000013284) #16	HSD17B12 (ENSSSCG00000021739) #17	ALKBH3 (ENSSSCG00000040937) #18	ACCSL (ENSSSCG00000057793) #20	ACCS (ENSSSCG00000013282) #21	ENSSSCG00000013281 #22	ENSSSCG00000061941 #22	ALX4 (ENSSSCG00000040329) #23	CD82 (ENSSSCG00000029521) #24	TSPAN18 (ENSSSCG00000013278) #25	TP53I11 (ENSSSCG00000031819) #26	PRDM11 (ENSSSCG00000013276) #27	SYT13 (ENSSSCG00000031590) #28	CHST1 (ENSSSCG00000013273) #29	SLC35C1 (ENSSSCG00000025647) #30	CRY2 (ENSSSCG00000013270) #31	MAPK8IP1 (ENSSSCG00000013269) #32	FREY1 (ENSSSCG00000056689) #33	PEX16 (ENSSSCG00000013267) #34	LARGE2 (ENSSSCG00000013266) #35	ENSSSCG00000049982	PHF21A (ENSSSCG00000023974) #36
Chacoan peccary	MODERN SPECIES	919	LDLRAD3 (ENSCWAG00000021589) #7	COMMD9 (ENSCWAG00000021577) #8	PRR5L (ENSCWAG00000021567) #9	TRAF6 (ENSCWAG00000021557) #10	RAG1 (ENSCWAG00000021554) #11	RAG2 (ENSCWAG00000021551) #12	IFTAP (ENSCWAG00000021537) #13	LRRC4C (ENSCWAG00000021529) #14	API5 (ENSCWAG00000021500) #15	TTC17 (ENSCWAG00000021487) #16	HSD17B12 (ENSCWAG00000021466) #17	ALKBH3 (ENSCWAG00000021459) #18	C11orf96 (ENSCWAG00000021454) #19	ACCSL (ENSCWAG00000021443) #20	ACCS (ENSCWAG00000021431) #21	EXT2 (ENSCWAG00000021417) #22	ALX4 (ENSCWAG00000021413) #23	CD82 (ENSCWAG00000021401) #24	TSPAN18 (ENSCWAG00000021388) #25	TP53I11 (ENSCWAG00000021382) #26	PRDM11 (ENSCWAG00000021374) #27	SYT13 (ENSCWAG00000021365) #28	CHST1 (ENSCWAG00000021361) #29	SLC35C1 (ENSCWAG00000021357) #30	CRY2 (ENSCWAG00000021334) #31	MAPK8IP1 (ENSCWAG00000021296) #32	FREY1 (ENSCWAG00000021286) #33	PEX16 (ENSCWAG00000021270) #34	LARGE2 (ENSCWAG00000021255) #35	PHF21A (ENSCWAG00000021231) #36	CREB3L1 (ENSCWAG00000021208) #37
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000017491.s.b.g	ENSGT00930000151314.e	ENSGT00390000016292.i.a.b	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00930000151992	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000017491.s.b.g	ENSGT00930000151314.e	ENSGT00390000016292.i.a.b	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000017491.s.b.g	ENSGT00930000151314.e	ENSGT00390000016292.i.a.b	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000017491.s.b.g	ENSGT00930000151314.e	ENSGT00390000016292.i.a.b	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000017491.s.b.g	ENSGT00930000151314.e	ENSGT00390000016292.i.a.b	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Narwhal	MODERN SPECIES	314	LDLRAD3 (ENSMMNG00015020881) #7	COMMD9 (ENSMMNG00015020902) #8	PRR5L (ENSMMNG00015020929) #9	TRAF6 (ENSMMNG00015020943) #10	RAG1 (ENSMMNG00015020958) #11	RAG2 (ENSMMNG00015020969) #12	IFTAP (ENSMMNG00015020977) #13	LRRC4C (ENSMMNG00015020998) #14	ENSMMNG00015015888	ENSMMNG00015015919	API5 (ENSMMNG00015015999) #15	TTC17 (ENSMMNG00015016233) #16	HSD17B12 (ENSMMNG00015016514) #17	ACCSL (ENSMMNG00015016665) #20	ACCS (ENSMMNG00015016880) #21	EXT2 (ENSMMNG00015017366) #22	ALX4 (ENSMMNG00015017478) #23	CD82 (ENSMMNG00015017522) #24	TSPAN18 (ENSMMNG00015017592) #25	TP53I11 (ENSMMNG00015017641) #26	PRDM11 (ENSMMNG00015017700) #27	SYT13 (ENSMMNG00015017742) #28	CHST1 (ENSMMNG00015017784) #29	SLC35C1 (ENSMMNG00015017798) #30	CRY2 (ENSMMNG00015017838) #31	MAPK8IP1 (ENSMMNG00015017984) #32	FREY1 (ENSMMNG00015018127) #33	PEX16 (ENSMMNG00015018197) #34	LARGE2 (ENSMMNG00015018329) #35	PHF21A (ENSMMNG00015018555) #36	CREB3L1 (ENSMMNG00015018682) #37
Beluga whale	MODERN SPECIES	7						ENSDLEG00000019913	ENSDLEG00000019893	FMN2 (ENSDLEG00000019873)	ENSDLEG00000019868	API5 (ENSDLEG00000019864) #15	TTC17 (ENSDLEG00000019853) #16	HSD17B12 (ENSDLEG00000019838) #17	ALKBH3 (ENSDLEG00000019830) #18	ENSDLEG00000019821 #20	ACCS (ENSDLEG00000019811) #21	EXT2 (ENSDLEG00000019803) #22	ALX4 (ENSDLEG00000019799) #23	CD82 (ENSDLEG00000019794) #24	TSPAN18 (ENSDLEG00000019787) #25	TP53I11 (ENSDLEG00000019784) #26	PRDM11 (ENSDLEG00000019779) #27	SYT13 (ENSDLEG00000019775) #28	CHST1 (ENSDLEG00000019771) #29	SLC35C1 (ENSDLEG00000019768) #30	CRY2 (ENSDLEG00000019743) #31	MAPK8IP1 (ENSDLEG00000019735) #32	PEX16 (ENSDLEG00000019675) #34	LARGE2 (ENSDLEG00000019658) #35	ENSDLEG00000019655	PHF21A (ENSDLEG00000019624) #36	CREB3L1 (ENSDLEG00000019610) #37
Vaquita	MODERN SPECIES	19	RAG2 (ENSPSNG00000020227) #12	IFTAP (ENSPSNG00000020245) #13	ENSPSNG00000020284	ENSPSNG00000020308	LRRC4C (ENSPSNG00000020317) #14	ENSPSNG00000020331	ENSPSNG00000020355	ENSPSNG00000020378	API5 (ENSPSNG00000020459) #15	TTC17 (ENSPSNG00000020829) #16	HSD17B12 (ENSPSNG00000020946) #17	ALKBH3 (ENSPSNG00000020981) #18	C11orf96 (ENSPSNG00000021018) #19	ENSPSNG00000021026	ACCS (ENSPSNG00000021036) #21	EXT2 (ENSPSNG00000021099) #22	ALX4 (ENSPSNG00000021198) #23	CD82 (ENSPSNG00000021231) #24	TP53I11 (ENSPSNG00000004006) #26	PRDM11 (ENSPSNG00000004037) #27	SYT13 (ENSPSNG00000004053) #28	CHST1 (ENSPSNG00000004065) #29	SLC35C1 (ENSPSNG00000004076) #30	CRY2 (ENSPSNG00000004100) #31	MAPK8IP1 (ENSPSNG00000004148) #32	FREY1 (ENSPSNG00000004225) #33	PEX16 (ENSPSNG00000004261) #34	LARGE2 (ENSPSNG00000004402) #35	PHF21A (ENSPSNG00000004656) #36	CREB3L1 (ENSPSNG00000004707) #37	DGKZ (ENSPSNG00000004933)
Dolphin	MODERN SPECIES	1058																EXT2 (ENSTTRG00000003292) #22	ALX4 (ENSTTRG00000003295) #23
Sperm whale	MODERN SPECIES	7	PRR5L (ENSPCTG00005013353) #9	TRAF6 (ENSPCTG00005013602) #10	RAG1 (ENSPCTG00005013675) #11	RAG2 (ENSPCTG00005013695) #12	C16H11orf74 (ENSPCTG00005013719) #13	LRRC4C (ENSPCTG00005013853) #14	ENSPCTG00005013896	ENSPCTG00005013926	ENSPCTG00005013951	API5 (ENSPCTG00005014154) #15	TTC17 (ENSPCTG00005014617) #16	HSD17B12 (ENSPCTG00005014877) #17	ALKBH3 (ENSPCTG00005014964) #18	C16H11orf96 (ENSPCTG00005015005) #19	ACCSL (ENSPCTG00005015019) #20	EXT2 (ENSPCTG00005015291) #22	ALX4 (ENSPCTG00005015649) #23	TSPAN18 (ENSPCTG00005015731) #25	ENSPCTG00005015760 #24	PRDM11 (ENSPCTG00005015782) #27	SYT13 (ENSPCTG00005015941) #28	CHST1 (ENSPCTG00005016008) #29	SLC35C1 (ENSPCTG00005016021) #30	CRY2 (ENSPCTG00005016092) #31	MAPK8IP1 (ENSPCTG00005016404) #32	C16H11orf94 (ENSPCTG00005016710) #33	PEX16 (ENSPCTG00005016747) #34	LARGE2 (ENSPCTG00005016908) #35	PHF21A (ENSPCTG00005017366) #36	AMBRA1 (ENSPCTG00005017524)	ENSPCTG00005018324
Blue whale	MODERN SPECIES	19	RAG1 (ENSBMSG00010013155) #11	RAG2 (ENSBMSG00010013164) #12	ENSBMSG00010013173 #13	ENSBMSG00010013188	LRRC4C (ENSBMSG00010013196) #14	ENSBMSG00010013207	ENSBMSG00010013215	ENSBMSG00010013220	API5 (ENSBMSG00010013262) #15	TTC17 (ENSBMSG00010013363) #16	HSD17B12 (ENSBMSG00010013402) #17	ALKBH3 (ENSBMSG00010013420) #18	C11orf96 (ENSBMSG00010013431) #19	ENSBMSG00010013443	ACCS (ENSBMSG00010013522) #21	EXT2 (ENSBMSG00010013657) #22	ALX4 (ENSBMSG00010013696) #23	CD82 (ENSBMSG00010013718) #24	TSPAN18 (ENSBMSG00010013734) #25	TP53I11 (ENSBMSG00010013752) #26	PRDM11 (ENSBMSG00010013777) #27	ENSBMSG00010013795	SYT13 (ENSBMSG00010013804) #28	CHST1 (ENSBMSG00010013813) #29	SLC35C1 (ENSBMSG00010013820) #30	CRY2 (ENSBMSG00010013886) #31	MAPK8IP1 (ENSBMSG00010014091) #32	FREY1 (ENSBMSG00010014231) #33	PEX16 (ENSBMSG00010014252) #34	LARGE2 (ENSBMSG00010014314) #35	PHF21A (ENSBMSG00010014561) #36
Pecora	ANCESTRAL SPECIES	7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Yarkand deer	MODERN SPECIES		COMMD9 (ENSCHYG00000016864) #8	PRR5L (ENSCHYG00000017023) #9	TRAF6 (ENSCHYG00000017116) #10	RAG1 (ENSCHYG00000017160) #11	RAG2 (ENSCHYG00000017191) #12	IFTAP (ENSCHYG00000000051) #13	LRRC4C (ENSCHYG00000000081) #14	ENSCHYG00000000090	API5 (ENSCHYG00000000112) #15	ENSCHYG00000000150 #16	HSD17B12 (ENSCHYG00000000235) #17	ALKBH3 (ENSCHYG00000000269) #18	C11orf96 (ENSCHYG00000000279) #19	ACCSL (ENSCHYG00000000316) #20	ACCS (ENSCHYG00000000358) #21	EXT2 (ENSCHYG00000000443) #22	ALX4 (ENSCHYG00000000519) #23	CD82 (ENSCHYG00000000545) #24	TSPAN18 (ENSCHYG00000000585) #25	ENSCHYG00000000622 #26	ENSCHYG00000000654	PRDM11 (ENSCHYG00000000644) #27	SYT13 (ENSCHYG00000000666) #28	CHST1 (ENSCHYG00000000673) #29	SLC35C1 (ENSCHYG00000000680) #30	CRY2 (ENSCHYG00000000698) #31	MAPK8IP1 (ENSCHYG00000000750) #32	FREY1 (ENSCHYG00000000819) #33	PEX16 (ENSCHYG00000000848) #34	LARGE2 (ENSCHYG00000000920) #35	PHF21A (ENSCHYG00000000954) #36
Percora_a	ANCESTRAL SPECIES	6	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Bovidae	ANCESTRAL SPECIES	6	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Bovinae	ANCESTRAL SPECIES	26	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Bos	ANCESTRAL SPECIES	25	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00950000185588	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Bos_b	ANCESTRAL SPECIES	12	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00950000185588	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Cow	MODERN SPECIES	6	COMMD9 (ENSBTAG00000019045) #8	PRR5L (ENSBTAG00000021029) #9	TRAF6 (ENSBTAG00000036009) #10	RAG1 (ENSBTAG00000040293) #11	RAG2 (ENSBTAG00000031309) #12	IFTAP (ENSBTAG00000021611) #13	LRRC4C (ENSBTAG00000007324) #14	ENSBTAG00000051591	API5 (ENSBTAG00000014474) #15	TTC17 (ENSBTAG00000031299) #16	HSD17B12 (ENSBTAG00000000087) #17	ALKBH3 (ENSBTAG00000009518) #18	C15H11orf96 (ENSBTAG00000045822) #19	ACCSL (ENSBTAG00000012053) #20	ACCS (ENSBTAG00000008465) #21	EXT2 (ENSBTAG00000019644) #22	ALX4 (ENSBTAG00000027563) #23	CD82 (ENSBTAG00000031252) #24	TSPAN18 (ENSBTAG00000021484) #25	ENSBTAG00000053859	TP53I11 (ENSBTAG00000017228) #26	PRDM11 (ENSBTAG00000006443) #27	SYT13 (ENSBTAG00000001703) #28	ENSBTAG00000054083	CHST1 (ENSBTAG00000003721) #29	SLC35C1 (ENSBTAG00000003199) #30	CRY2 (ENSBTAG00000021223) #31	MAPK8IP1 (ENSBTAG00000000317) #32	FREY1 (ENSBTAG00000027562) #33	PEX16 (ENSBTAG00000003126) #34	LARGE2 (ENSBTAG00000009607) #35
Hybrid Bos Indicus	MODERN SPECIES	6	RAG1 (ENSBIXG00005016289) #11	RAG2 (ENSBIXG00005006240) #12	IFTAP (ENSBIXG00005016428) #13	LRRC4C (ENSBIXG00005016515) #14	API5 (ENSBIXG00005016658) #15	ENSBIXG00005002693	TTC17 (ENSBIXG00005006754) #16	ENSBIXG00005016808	ENSBIXG00005016812	HSD17B12 (ENSBIXG00005007044) #17	ALKBH3 (ENSBIXG00005016885) #18	ENSBIXG00005016904	C11orf96 (ENSBIXG00005002746) #19	ACCSL (ENSBIXG00005016927) #20	ACCS (ENSBIXG00005002769) #21	EXT2 (ENSBIXG00005017227) #22	ALX4 (ENSBIXG00005017263) #23	CD82 (ENSBIXG00005017303) #24	ENSBIXG00005017320	TSPAN18 (ENSBIXG00005017360) #25	TP53I11 (ENSBIXG00005006359) #26	PRDM11 (ENSBIXG00005002842) #27	SYT13 (ENSBIXG00005017503) #28	ENSBIXG00005017575	CHST1 (ENSBIXG00005017606) #29	SLC35C1 (ENSBIXG00005002867) #30	CRY2 (ENSBIXG00005017785) #31	MAPK8IP1 (ENSBIXG00005017891) #32	FREY1 (ENSBIXG00005017911) #33	PEX16 (ENSBIXG00005005656) #34	LARGE2 (ENSBIXG00005018050) #35
Bos_a	ANCESTRAL SPECIES	36	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426.r #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00950000185588	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Domestic yak	MODERN SPECIES	4	PRR5L (ENSBGRG00000023331) #9	ENSBGRG00000023402 #10	RAG1 (ENSBGRG00000023505) #11	RAG2 (ENSBGRG00000023532) #12	IFTAP (ENSBGRG00000023557) #13	LRRC4C (ENSBGRG00000023742) #14	ENSBGRG00000023797	API5 (ENSBGRG00000023877) #15	TTC17 (ENSBGRG00000024330) #16	ENSBGRG00000024524	HSD17B12 (ENSBGRG00000024610) #17	ALKBH3 (ENSBGRG00000024727) #18	ENSBGRG00000024758	ENSBGRG00000024769 #20	ACCS (ENSBGRG00000024813) #21	EXT2 (ENSBGRG00000024837) #22	ALX4 (ENSBGRG00000024852) #23	CD82 (ENSBGRG00000024889) #24	TSPAN18 (ENSBGRG00000024939) #25	ENSBGRG00000024991 #26	PRDM11 (ENSBGRG00000008834) #27	SYT13 (ENSBGRG00000009098) #28	CHST1 (ENSBGRG00000009183) #29	SLC35C1 (ENSBGRG00000009196) #30	CRY2 (ENSBGRG00000009273) #31	MAPK8IP1 (ENSBGRG00000009722) #32	FREY1 (ENSBGRG00000009996) #33	PEX16 (ENSBGRG00000010057) #34	LARGE2 (ENSBGRG00000010390) #35	PHF21A (ENSBGRG00000010552) #36	CREB3L1 (ENSBGRG00000010789) #37
Wild yak	MODERN SPECIES	1748											HSD17B12 (ENSBMUG00000012520) #17	ALKBH3 (ENSBMUG00000012545) #18	C11orf96 (ENSBMUG00000012555) #19	ACCSL (ENSBMUG00000012620) #20	ACCS (ENSBMUG00000012650) #21	EXT2 (ENSBMUG00000012685) #22	ALX4 (ENSBMUG00000012706) #23	CD82 (ENSBMUG00000012774) #24	TSPAN18 (ENSBMUG00000012833) #25	TP53I11 (ENSBMUG00000012889) #26	PRDM11 (ENSBMUG00000012966) #27	SYT13 (ENSBMUG00000013020) #28
American bison	MODERN SPECIES	2600																EXT2 (ENSBBBG00000022926) #22	ALX4 (ENSBBBG00000008407) #23	CD82 (ENSBBBG00000022777) #24	TSPAN18 (ENSBBBG00000022737) #25
Caprinae	ANCESTRAL SPECIES	6	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT01090000260040.b.b.b.b.b.a	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00910000148817	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Goat	MODERN SPECIES	6	COMMD9 (ENSCHIG00000020550) #8	PRR5L (ENSCHIG00000001684) #9	TRAF6 (ENSCHIG00000015888) #10	RAG1 (ENSCHIG00000013265) #11	RAG2 (ENSCHIG00000009200) #12	ENSCHIG00000010847 #13	LRRC4C (ENSCHIG00000005885) #14	ENSCHIG00000008612	API5 (ENSCHIG00000015343) #15	TTC17 (ENSCHIG00000011579) #16	HSD17B12 (ENSCHIG00000011795) #17	ALKBH3 (ENSCHIG00000017579) #18	ENSCHIG00000016194 #19	ACCSL (ENSCHIG00000010057) #20	ACCS (ENSCHIG00000026253) #21	EXT2 (ENSCHIG00000026007) #22	ALX4 (ENSCHIG00000010305) #23	CD82 (ENSCHIG00000015537) #24	TSPAN18 (ENSCHIG00000024681) #25	TP53I11 (ENSCHIG00000017884) #26	PRDM11 (ENSCHIG00000003161) #27	SYT13 (ENSCHIG00000027048) #28	CHST1 (ENSCHIG00000008696) #29	SLC35C1 (ENSCHIG00000021201) #30	CRY2 (ENSCHIG00000023621) #31	MAPK8IP1 (ENSCHIG00000015720) #32	PEX16 (ENSCHIG00000011489) #34	LARGE2 (ENSCHIG00000021453) #35	PHF21A (ENSCHIG00000023760) #36	CREB3L1 (ENSCHIG00000008753) #37	DGKZ (ENSCHIG00000018020)
Rambouillet Sheep	MODERN SPECIES	6	TRAF6 (ENSOARG00020017492) #10	RAG1 (ENSOARG00020017552) #11	RAG2 (ENSOARG00020017591) #12	ENSOARG00020017606 #13	ENSOARG00020017646	ENSOARG00020017700	LRRC4C (ENSOARG00020017737) #14	ENSOARG00020017753	TTC17 (ENSOARG00020017912) #16	ENSOARG00020019476 #17	ALKBH3 (ENSOARG00020019554) #18	C11orf96 (ENSOARG00020019596) #19	ENSOARG00020019621	ENSOARG00020019654 #20	ACCS (ENSOARG00020019774) #21	EXT2 (ENSOARG00020019927) #22	ALX4 (ENSOARG00020020142) #23	CD82 (ENSOARG00020020176) #24	TSPAN18 (ENSOARG00020020280) #25	TP53I11 (ENSOARG00020020367) #26	PRDM11 (ENSOARG00020020437) #27	SYT13 (ENSOARG00020020545) #28	SLC35C1 (ENSOARG00020020655) #30	CRY2 (ENSOARG00020020700) #31	MAPK8IP1 (ENSOARG00020021179) #32	FREY1 (ENSOARG00020021284) #33	PEX16 (ENSOARG00020021321) #34	LARGE2 (ENSOARG00020021424) #35	PHF21A (ENSOARG00020021567) #36	CREB3L1 (ENSOARG00020021730) #37	DGKZ (ENSOARG00020021820)
Siberian musk deer	MODERN SPECIES	118									LRRC4C (ENSMMSG00000011762) #14	API5 (ENSMMSG00000011658) #15	TTC17 (ENSMMSG00000011534) #16	HSD17B12 (ENSMMSG00000011385) #17	ALKBH3 (ENSMMSG00000011296) #18	ACCSL (ENSMMSG00000011043) #20	ACCS (ENSMMSG00000010941) #21	EXT2 (ENSMMSG00000010833) #22	ALX4 (ENSMMSG00000010786) #23	CD82 (ENSMMSG00000010721) #24	TSPAN18 (ENSMMSG00000010679) #25	TP53I11 (ENSMMSG00000010631) #26	PRDM11 (ENSMMSG00000010568) #27	SYT13 (ENSMMSG00000010526) #28	CHST1 (ENSMMSG00000010503) #29	SLC35C1 (ENSMMSG00000010467) #30	CRY2 (ENSMMSG00000010187) #31	MAPK8IP1 (ENSMMSG00000010074) #32	FREY1 (ENSMMSG00000010042) #33	PEX16 (ENSMMSG00000009980) #34	LARGE2 (ENSMMSG00000009888) #35	PHF21A (ENSMMSG00000009796) #36	CREB3L1 (ENSMMSG00000009753) #37
Camelidae	ANCESTRAL SPECIES	25	ENSGT00390000006218 #8	ENSGT00390000004029.m	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Arabian camel	MODERN SPECIES	1	PRR5L (ENSCDRG00005014325) #9	TRAF6 (ENSCDRG00005014279) #10	RAG1 (ENSCDRG00005014267) #11	RAG2 (ENSCDRG00005014248) #12	IFTAP (ENSCDRG00005014214) #13	ENSCDRG00005014183	LRRC4C (ENSCDRG00005014168) #14	API5 (ENSCDRG00005013676) #15	TTC17 (ENSCDRG00005013500) #16	ENSCDRG00005013476	HSD17B12 (ENSCDRG00005013288) #17	ALKBH3 (ENSCDRG00005013227) #18	C11orf96 (ENSCDRG00005013211) #19	ACCSL (ENSCDRG00005013037) #20	ACCS (ENSCDRG00005012856) #21	EXT2 (ENSCDRG00005012724) #22	ALX4 (ENSCDRG00005012645) #23	CD82 (ENSCDRG00005012531) #24	TSPAN18 (ENSCDRG00005012470) #25	TP53I11 (ENSCDRG00005012371) #26	PRDM11 (ENSCDRG00005012242) #27	SYT13 (ENSCDRG00005012181) #28	CHST1 (ENSCDRG00005012167) #29	SLC35C1 (ENSCDRG00005012129) #30	CRY2 (ENSCDRG00005011968) #31	MAPK8IP1 (ENSCDRG00005011734) #32	FREY1 (ENSCDRG00005011672) #33	PEX16 (ENSCDRG00005011593) #34	LARGE2 (ENSCDRG00005011467) #35	PHF21A (ENSCDRG00005011242) #36	CREB3L1 (ENSCDRG00005011173) #37
Alpaca	MODERN SPECIES	3540															ACCS (ENSVPAG00000007394) #21	EXT2 (ENSVPAG00000007398) #22
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00440000034605	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860.j #17	ENSGT00940000157226 #18	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37	ENSGT00940000156152
Tenrec	MODERN SPECIES	1255																EXT2 (ENSETEG00000019558) #22
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00440000034605	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860.j #17	ENSGT00940000157226 #18	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000018235 #33	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37	ENSGT00940000156152
Elephant	MODERN SPECIES	209	LDLRAD3 (ENSLAFG00000017028) #7	COMMD9 (ENSLAFG00000001396) #8	PRR5L (ENSLAFG00000016459) #9	TRAF6 (ENSLAFG00000016463) #10	RAG1 (ENSLAFG00000023175) #11	RAG2 (ENSLAFG00000016472) #12	IFTAP (ENSLAFG00000016474) #13	LRRC4C (ENSLAFG00000006244) #14	ENSLAFG00000028516	API5 (ENSLAFG00000001688) #15	TTC17 (ENSLAFG00000001692) #16	ENSLAFG00000003439 #17	ALKBH3 (ENSLAFG00000003441) #18	ACCSL (ENSLAFG00000014256) #20	ACCS (ENSLAFG00000010662) #21	EXT2 (ENSLAFG00000010668) #22	ALX4 (ENSLAFG00000010673) #23	TSPAN18 (ENSLAFG00000005533) #25	TP53I11 (ENSLAFG00000005709) #26	ENSLAFG00000001091 #27	SYT13 (ENSLAFG00000017702) #28	CHST1 (ENSLAFG00000009782) #29	SLC35C1 (ENSLAFG00000003806) #30	CRY2 (ENSLAFG00000027340) #31	MAPK8IP1 (ENSLAFG00000029841) #32	FREY1 (ENSLAFG00000031789) #33	PEX16 (ENSLAFG00000031489) #34	LARGE2 (ENSLAFG00000022018) #35	PHF21A (ENSLAFG00000003576) #36	CREB3L1 (ENSLAFG00000005092) #37	DGKZ (ENSLAFG00000015107)
Hyrax	MODERN SPECIES	3779																EXT2 (ENSPCAG00000005131) #22	ALX4 (ENSPCAG00000005209) #23
Xenarthra	ANCESTRAL SPECIES	613											ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000162841 #20	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24
Armadillo	MODERN SPECIES	2400										ENSDNOG00000015114 #17	ALKBH3 (ENSDNOG00000036652) #18	ENSDNOG00000011682 #19	ACCSL (ENSDNOG00000005612) #20	ENSDNOG00000045457 #21	ENSDNOG00000005721 #21	EXT2 (ENSDNOG00000015967) #22	ALX4 (ENSDNOG00000009877) #23	CD82 (ENSDNOG00000042791) #24
Sloth	MODERN SPECIES	4118																ENSCHOG00000007022 #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149.g.b #13	ENSGT00940000153298.m.b.a.a.h.a	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Opossum	MODERN SPECIES	4	ENSMODG00000027830	ENSMODG00000029605	ENSMODG00000024462	ENSMODG00000044338	LRRC4C (ENSMODG00000024461) #14	ENSMODG00000048963	ENSMODG00000050454	API5 (ENSMODG00000019854) #15	TTC17 (ENSMODG00000019858) #16	HSD17B12 (ENSMODG00000019862) #17	ALKBH3 (ENSMODG00000019863) #18	C11orf96 (ENSMODG00000040262) #19	ENSMODG00000019866	ENSMODG00000019865	ENSMODG00000019867 #21	EXT2 (ENSMODG00000019868) #22	ALX4 (ENSMODG00000019869) #23	CD82 (ENSMODG00000040483) #24	TSPAN18 (ENSMODG00000019871) #25	TP53I11 (ENSMODG00000019873) #26	PRDM11 (ENSMODG00000019874) #27	ENSMODG00000042658	SYT13 (ENSMODG00000019875) #28	ENSMODG00000019876	CHST1 (ENSMODG00000024450) #29	SLC35C1 (ENSMODG00000019878) #30	CRY2 (ENSMODG00000019881) #31	MAPK8IP1 (ENSMODG00000019877) #32	PEX16 (ENSMODG00000019884) #34	LARGE2 (ENSMODG00000019885) #35	PHF21A (ENSMODG00000019887) #36
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149.h #13	ENSGT00940000153298.m.b.a.a.h.a	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Diprotodontia	ANCESTRAL SPECIES	46	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149.g.a #13	ENSGT00940000153298.m.b.a.a.h.a	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Diprotodontia_a	ANCESTRAL SPECIES	46	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149.g.a #13	ENSGT00940000153298.m.b.a.a.h.a	ENSGT00390000008099.`c.a	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000161101 #21	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Common wonbat	MODERN SPECIES	1058	RAG1 (ENSVURG00010011733) #11	RAG2 (ENSVURG00010011726) #12	ENSVURG00010011715 #13	ENSVURG00010011704	ENSVURG00010011691	ENSVURG00010011681	ENSVURG00010011671	LRRC4C (ENSVURG00010011660) #14	API5 (ENSVURG00010011565) #15	TTC17 (ENSVURG00010011530) #16	HSD17B12 (ENSVURG00010011495) #17	ALKBH3 (ENSVURG00010011481) #18	C11orf96 (ENSVURG00010011478) #19	ENSVURG00010011462	ACCS (ENSVURG00010011433) #21	EXT2 (ENSVURG00010011405) #22	ALX4 (ENSVURG00010011388) #23	CD82 (ENSVURG00010011375) #24	TSPAN18 (ENSVURG00010011338) #25	TP53I11 (ENSVURG00010011301) #26	PRDM11 (ENSVURG00010011272) #27	SYT13 (ENSVURG00010011263) #28	CHST1 (ENSVURG00010011252) #29	SLC35C1 (ENSVURG00010011245) #30	CRY2 (ENSVURG00010011233) #31	MAPK8IP1 (ENSVURG00010010986) #32	PEX16 (ENSVURG00010010942) #34	LARGE2 (ENSVURG00010010886) #35	PHF21A (ENSVURG00010010860) #36	CREB3L1 (ENSVURG00010010813) #37	DGKZ (ENSVURG00010010658)
koala	MODERN SPECIES	139							ENSPCIG00000037030 #14	API5 (ENSPCIG00000021779) #15	TTC17 (ENSPCIG00000021783) #16	HSD17B12 (ENSPCIG00000034473) #17	ALKBH3 (ENSPCIG00000021794) #18	C11orf96 (ENSPCIG00000021797) #19	ENSPCIG00000016360	ENSPCIG00000016363	ACCS (ENSPCIG00000016364) #21	EXT2 (ENSPCIG00000032707) #22	ALX4 (ENSPCIG00000036593) #23	ENSPCIG00000025054 #24	TSPAN18 (ENSPCIG00000025051) #25	ENSPCIG00000025050 #26	PRDM11 (ENSPCIG00000020145) #27	SYT13 (ENSPCIG00000020143) #28	ENSPCIG00000001772	CHST1 (ENSPCIG00000001789) #29	SLC35C1 (ENSPCIG00000020139) #30	CRY2 (ENSPCIG00000020134) #31	MAPK8IP1 (ENSPCIG00000020132) #32	PEX16 (ENSPCIG00000020128) #34	LARGE2 (ENSPCIG00000020123) #35	PHF21A (ENSPCIG00000020119) #36	CREB3L1 (ENSPCIG00000020114) #37
Wallaby	MODERN SPECIES	5730																EXT2 (ENSMEUG00000001063) #22
Tasmanian devil	MODERN SPECIES	5	LDLRAD3 (ENSSHAG00000030828) #7	COMMD9 (ENSSHAG00000013073) #8	PRR5L (ENSSHAG00000027462) #9	TRAF6 (ENSSHAG00000021499) #10	RAG1 (ENSSHAG00000030524) #11	RAG2 (ENSSHAG00000027759) #12	ENSSHAG00000024309 #13	ENSSHAG00000032308	LRRC4C (ENSSHAG00000015017) #14	ENSSHAG00000018895 #15	TTC17 (ENSSHAG00000018903) #16	HSD17B12 (ENSSHAG00000026618) #17	ALKBH3 (ENSSHAG00000024968) #18	ENSSHAG00000008476	ACCS (ENSSHAG00000008665) #21	EXT2 (ENSSHAG00000025904) #22	ALX4 (ENSSHAG00000030684) #23	ENSSHAG00000000290	ENSSHAG00000021679	ENSSHAG00000031773	CD82 (ENSSHAG00000020992) #24	TSPAN18 (ENSSHAG00000020531) #25	TP53I11 (ENSSHAG00000032139) #26	PRDM11 (ENSSHAG00000030251) #27	SYT13 (ENSSHAG00000010487) #28	ENSSHAG00000028085	CHST1 (ENSSHAG00000026002) #29	SLC35C1 (ENSSHAG00000027014) #30	CRY2 (ENSSHAG00000025020) #31	PEX16 (ENSSHAG00000031730) #34	LARGE2 (ENSSHAG00000022457) #35
Platypus	MODERN SPECIES	14	ENSOANG00000007388	LDLRAD3 (ENSOANG00000031345) #7	ENSOANG00000011767 #8	PRR5L (ENSOANG00000011768) #9	TRAF6 (ENSOANG00000011769) #10	RAG1 (ENSOANG00000046813) #11	RAG2 (ENSOANG00000011771) #12	ENSOANG00000011773 #13	LRRC4C (ENSOANG00000000566) #14	API5 (ENSOANG00000009405) #15	TTC17 (ENSOANG00000009406) #16	ENSOANG00000009210 #17	ALKBH3 (ENSOANG00000009208) #18	ENSOANG00000037961	ACCS (ENSOANG00000040441) #21	EXT2 (ENSOANG00000003194) #22	ALX4 (ENSOANG00000037260) #23	CD82 (ENSOANG00000042613) #24	TSPAN18 (ENSOANG00000038384) #25	TP53I11 (ENSOANG00000042889) #26	PRDM11 (ENSOANG00000011927) #27	SYT13 (ENSOANG00000039954) #28	ENSOANG00000010924	CHST1 (ENSOANG00000051109) #29	SLC35C1 (ENSOANG00000005349) #30	CRY2 (ENSOANG00000005350) #31	MAPK8IP1 (ENSOANG00000038913) #32	ENSOANG00000046338 #33	PEX16 (ENSOANG00000002458) #34	LARGE2 (ENSOANG00000005352) #35	PHF21A (ENSOANG00000005355) #36
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Episquamata	ANCESTRAL SPECIES		ENSGT00440000034605	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481.g #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000016768	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481.g #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000016768	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481.g #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000154234.a	ENSGT00390000016768	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481.g #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00390000016768	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00990000214222	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481.g #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36	ENSGT00940000159848 #37
Mainland tiger snake	MODERN SPECIES	9	COMMD9 (ENSNSUG00000008978) #8	PRR5L (ENSNSUG00000008970) #9	TRAF6 (ENSNSUG00000008969) #10	RAG1 (ENSNSUG00000008968) #11	RAG2 (ENSNSUG00000008967) #12	ENSNSUG00000008966	LRRC4C (ENSNSUG00000008965) #14	ENSNSUG00000008964	API5 (ENSNSUG00000008963) #15	TTC17 (ENSNSUG00000008875) #16	ENSNSUG00000008873	HSD17B12 (ENSNSUG00000008872) #17	ALKBH3 (ENSNSUG00000008871) #18	C11orf96 (ENSNSUG00000008870) #19	ENSNSUG00000008869	EXT2 (ENSNSUG00000008732) #22	ALX4 (ENSNSUG00000008731) #23	ENSNSUG00000008730 #24	TSPAN18 (ENSNSUG00000008729) #25	TP53I11 (ENSNSUG00000008727) #26
Eastern brown snake	MODERN SPECIES	1	PAMR1 (ENSPTXG00000008676)	FJX1 (ENSPTXG00000008677)	LDLRAD3 (ENSPTXG00000008678) #7	COMMD9 (ENSPTXG00000008679) #8	PRR5L (ENSPTXG00000008680) #9	TRAF6 (ENSPTXG00000008681) #10	RAG1 (ENSPTXG00000008682) #11	RAG2 (ENSPTXG00000008683) #12	LRRC4C (ENSPTXG00000008684) #14	API5 (ENSPTXG00000008685) #15	TTC17 (ENSPTXG00000008686) #16	ENSPTXG00000008689	ALKBH3 (ENSPTXG00000008690) #18	C11orf96 (ENSPTXG00000008691) #19	ENSPTXG00000008692	EXT2 (ENSPTXG00000008693) #22	ALX4 (ENSPTXG00000008695) #23	ENSPTXG00000008696 #24	TSPAN18 (ENSPTXG00000008697) #25	TP53I11 (ENSPTXG00000008698) #26	PRDM11 (ENSPTXG00000008699) #27	SYT13 (ENSPTXG00000008700) #28	ENSPTXG00000008705	CHST1 (ENSPTXG00000008707) #29	SLC35C1 (ENSPTXG00000008708) #30	CRY2 (ENSPTXG00000008709) #31	MAPK8IP1 (ENSPTXG00000008710) #32	PEX16 (ENSPTXG00000008712) #34	LARGE2 (ENSPTXG00000008713) #35	PHF21A (ENSPTXG00000008714) #36	CREB3L1 (ENSPTXG00000008716) #37
Blue-lipped sea krait	MODERN SPECIES	6534																EXT2 (ENSLLTG00000006318) #22
Indian cobra	MODERN SPECIES		COMMD9 (ENSNNAG00000008937) #8	PRR5L (ENSNNAG00000008974) #9	ENSNNAG00000009086	TRAF6 (ENSNNAG00000009096) #10	RAG1 (ENSNNAG00000009122) #11	RAG2 (ENSNNAG00000009131) #12	LRRC4C (ENSNNAG00000009141) #14	API5 (ENSNNAG00000009155) #15	TTC17 (ENSNNAG00000009255) #16	HSD17B12 (ENSNNAG00000010264) #17	ALKBH3 (ENSNNAG00000010286) #18	C11orf96 (ENSNNAG00000010307) #19	ENSNNAG00000010425	ENSNNAG00000010340	ENSNNAG00000010452	EXT2 (ENSNNAG00000010463) #22	ALX4 (ENSNNAG00000010499) #23	ENSNNAG00000010552 #24	TSPAN18 (ENSNNAG00000010573) #25	ENSNNAG00000010595 #26	PRDM11 (ENSNNAG00000010628) #27	ENSNNAG00000010688	SYT13 (ENSNNAG00000010715) #28	ENSNNAG00000010840	CHST1 (ENSNNAG00000010881) #29	ENSNNAG00000010894	SLC35C1 (ENSNNAG00000010949) #30	CRY2 (ENSNNAG00000010955) #31	MAPK8IP1 (ENSNNAG00000011005) #32	PEX16 (ENSNNAG00000011154) #34	LARGE2 (ENSNNAG00000011188) #35
Lizard	MODERN SPECIES		CELF1 (ENSACAG00000002114)	PTPMT1 (ENSACAG00000002085)	KBTBD4 (ENSACAG00000002052)	NDUFS3 (ENSACAG00000001966)	ENSACAG00000045049	C1QTNF4 (ENSACAG00000037453)	ENSACAG00000001858	ENSACAG00000044894	ENSACAG00000043516	ENSACAG00000038770	ENSACAG00000000717 #17	ENSACAG00000000855 #18	ENSACAG00000000510 #17	ENSACAG00000000365 #19	ENSACAG00000014115	EXT2 (ENSACAG00000014199) #22	ALX4 (ENSACAG00000014352) #23	ENSACAG00000036806	ENSACAG00000014373 #24	ENSACAG00000036339	TSPAN18 (ENSACAG00000014461) #25	TP53I11 (ENSACAG00000014509) #26	PRDM11 (ENSACAG00000014563) #27	SYT13 (ENSACAG00000014581) #28	ENSACAG00000014622	CHST1 (ENSACAG00000014634) #29	ENSACAG00000044872	SLC35C1 (ENSACAG00000014640) #30	CRY2 (ENSACAG00000014653) #31	MAPK8IP1 (ENSACAG00000014739) #32	ENSACAG00000038905
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481.g #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35	ENSGT00940000156124 #36
Common wall lizard	MODERN SPECIES		TRIM44 (ENSPMRG00000000331)	LDLRAD3 (ENSPMRG00000000306) #7	COMMD9 (ENSPMRG00000000266) #8	PRR5L (ENSPMRG00000000221) #9	ENSPMRG00000000199	RAG1 (ENSPMRG00000000184) #11	RAG2 (ENSPMRG00000000173) #12	ENSPMRG00000000162	LRRC4C (ENSPMRG00000000147) #14	API5 (ENSPMRG00000000132) #15	TTC17 (ENSPMRG00000000104) #16	HSD17B12 (ENSPMRG00000014818) #17	ALKBH3 (ENSPMRG00000014811) #18	C11orf96 (ENSPMRG00000014805) #19	ENSPMRG00000014791	EXT2 (ENSPMRG00000014776) #22	ALX4 (ENSPMRG00000014763) #23	CD82 (ENSPMRG00000014744) #24	ENSPMRG00000014731	TSPAN18 (ENSPMRG00000014727) #25	TP53I11 (ENSPMRG00000014716) #26	PRDM11 (ENSPMRG00000014709) #27	SYT13 (ENSPMRG00000014700) #28	ENSPMRG00000014692	ENSPMRG00000014684	CHST1 (ENSPMRG00000014681) #29	SLC35C1 (ENSPMRG00000014679) #30	CRY2 (ENSPMRG00000014673) #31	MAPK8IP1 (ENSPMRG00000014660) #32	PEX16 (ENSPMRG00000014649) #34	LARGE2 (ENSPMRG00000014630) #35
Argentine black and white tegu	MODERN SPECIES	3	RAG2 (ENSSMRG00000004809) #12	ENSSMRG00000004832	LRRC4C (ENSSMRG00000004842) #14	ENSSMRG00000004851	ENSSMRG00000004858	ENSSMRG00000004867	API5 (ENSSMRG00000004889) #15	ATP6V1FNB (ENSSMRG00000004909)	ATP6V1F (ENSSMRG00000004918)	LSM8 (ENSSMRG00000004921)	TTC17 (ENSSMRG00000004923) #16	HSD17B12 (ENSSMRG00000004956) #17	ALKBH3 (ENSSMRG00000005011) #18	C11orf96 (ENSSMRG00000005018) #19	ENSSMRG00000005022	EXT2 (ENSSMRG00000005057) #22	ALX4 (ENSSMRG00000005074) #23	ENSSMRG00000005121	ENSSMRG00000005130 #24	ENSSMRG00000005143	TSPAN18 (ENSSMRG00000005149) #25	TP53I11 (ENSSMRG00000005157) #26	PRDM11 (ENSSMRG00000005163) #27	SYT13 (ENSSMRG00000005208) #28	ENSSMRG00000005354	ENSSMRG00000005379	CHST1 (ENSSMRG00000005418) #29	SLC35C1 (ENSSMRG00000005444) #30	CRY2 (ENSSMRG00000005452) #31	MAPK8IP1 (ENSSMRG00000005458) #32	PEX16 (ENSSMRG00000005465) #34
tuatara	MODERN SPECIES	1650															ENSSPUG00000004597	EXT2 (ENSSPUG00000004589) #22	ALX4 (ENSSPUG00000004577) #23
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d.a	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34	ENSGT00940000158758 #35
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d.a	ENSGT00940000161051.b.e	ENSGT00940000161051.b.d.b	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00990000212297	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d.a	ENSGT00940000161051.b.e	ENSGT00940000161051.b.d.b	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34
Three-toed box turtle	MODERN SPECIES	40	PRR5L (ENSTMTG00000008916) #9	TRAF6 (ENSTMTG00000008934) #10	RAG1 (ENSTMTG00000008950) #11	RAG2 (ENSTMTG00000008953) #12	IFTAP (ENSTMTG00000008963) #13	LRRC4C (ENSTMTG00000008975) #14	ENSTMTG00000008983	API5 (ENSTMTG00000008992) #15	TTC17 (ENSTMTG00000009031) #16	HSD17B12 (ENSTMTG00000009085) #17	ENSTMTG00000009108	ALKBH3 (ENSTMTG00000009123) #18	ENSTMTG00000009140	C11orf96 (ENSTMTG00000009151) #19	ENSTMTG00000009155	EXT2 (ENSTMTG00000009184) #22	ALX4 (ENSTMTG00000009213) #23	CD82 (ENSTMTG00000000072) #24	TSPAN18 (ENSTMTG00000000107) #25	TP53I11 (ENSTMTG00000000133) #26	PRDM11 (ENSTMTG00000000166) #27	SYT13 (ENSTMTG00000000209) #28	ENSTMTG00000000261	ENSTMTG00000000324	ENSTMTG00000000366	CHST1 (ENSTMTG00000000417) #29	SLC35C1 (ENSTMTG00000000435) #30	CRY2 (ENSTMTG00000000450) #31	MAPK8IP1 (ENSTMTG00000000485) #32	PEX16 (ENSTMTG00000000523) #34	LARGE2 (ENSTMTG00000000547) #35
painted turtle	MODERN SPECIES	13	LDLRAD3 (ENSCPBG00000012541) #7	COMMD9 (ENSCPBG00000012542) #8	PRR5L (ENSCPBG00000012543) #9	TRAF6 (ENSCPBG00000012545) #10	RAG1 (ENSCPBG00000012546) #11	RAG2 (ENSCPBG00000012547) #12	IFTAP (ENSCPBG00000012548) #13	LRRC4C (ENSCPBG00000012554) #14	API5 (ENSCPBG00000012564) #15	TTC17 (ENSCPBG00000012566) #16	HSD17B12 (ENSCPBG00000012572) #17	ENSCPBG00000012573	ALKBH3 (ENSCPBG00000012575) #18	C11orf96 (ENSCPBG00000012577) #19	ENSCPBG00000012580	EXT2 (ENSCPBG00000012585) #22	ALX4 (ENSCPBG00000012590) #23	CD82 (ENSCPBG00000012593) #24	TSPAN18 (ENSCPBG00000012596) #25	TP53I11 (ENSCPBG00000012600) #26	PRDM11 (ENSCPBG00000012601) #27	SYT13 (ENSCPBG00000012602) #28	ENSCPBG00000012603	ENSCPBG00000012605	ENSCPBG00000012607	ENSCPBG00000012613	CHST1 (ENSCPBG00000012615) #29	SLC35C1 (ENSCPBG00000012617) #30	CRY2 (ENSCPBG00000012619) #31	MAPK8IP1 (ENSCPBG00000012622) #32	PEX16 (ENSCPBG00000012625) #34
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196.e #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d.a	ENSGT00940000161051.b.e	ENSGT00940000161051.b.d.b	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34
Goode s thornscrub tortoise	MODERN SPECIES	18	LDLRAD3 (ENSGEVG00005015195) #7	COMMD9 (ENSGEVG00005015180) #8	PRR5L (ENSGEVG00005015154) #9	TRAF6 (ENSGEVG00005015114) #10	RAG1 (ENSGEVG00005015081) #11	RAG2 (ENSGEVG00005015067) #12	IFTAP (ENSGEVG00005015044) #13	LRRC4C (ENSGEVG00005015025) #14	ENSGEVG00005014999	API5 (ENSGEVG00005014961) #15	TTC17 (ENSGEVG00005014269) #16	HSD17B12 (ENSGEVG00005014144) #17	ALKBH3 (ENSGEVG00005014116) #18	C11orf96 (ENSGEVG00005014097) #19	ENSGEVG00005014034	EXT2 (ENSGEVG00005013950) #22	ALX4 (ENSGEVG00005013888) #23	CD82 (ENSGEVG00005013867) #24	TSPAN18 (ENSGEVG00005013791) #25	TP53I11 (ENSGEVG00005013726) #26	PRDM11 (ENSGEVG00005013687) #27	SYT13 (ENSGEVG00005013529) #28	ENSGEVG00005013341	ENSGEVG00005013168	ENSGEVG00005012968	ENSGEVG00005012924	CHST1 (ENSGEVG00005012904) #29	SLC35C1 (ENSGEVG00005012889) #30	CRY2 (ENSGEVG00005012859) #31	MAPK8IP1 (ENSGEVG00005012653) #32	PEX16 (ENSGEVG00005012603) #34
Abingdon island giant tortoise	MODERN SPECIES	1512				ATP2B1 (ENSCABG00000013308)	POC1B (ENSCABG00000013604)	DUSP6 (ENSCABG00000013612)	API5 (ENSCABG00000000117) #15	ENSCABG00000000158 #16	ENSCABG00000000315 #16	HSD17B12 (ENSCABG00000000367) #17	ALKBH3 (ENSCABG00000000396) #18	ENSCABG00000000409	C11orf96 (ENSCABG00000000419) #19	ENSCABG00000000426	ENSCABG00000000432	EXT2 (ENSCABG00000000447) #22	ALX4 (ENSCABG00000000459) #23	CD82 (ENSCABG00000000468) #24
Chinese turtle	MODERN SPECIES	1173	RAG1 (ENSPSIG00000001811) #11	RAG2 (ENSPSIG00000001813) #12	IFTAP (ENSPSIG00000011179) #13	ENSPSIG00000011231	ENSPSIG00000001816	LRRC4C (ENSPSIG00000001820) #14	ENSPSIG00000001824	ENSPSIG00000011275	ENSPSIG00000011281	API5 (ENSPSIG00000011287) #15	TTC17 (ENSPSIG00000011414) #16	HSD17B12 (ENSPSIG00000011423) #17	ENSPSIG00000011915	ALKBH3 (ENSPSIG00000011933) #18	ENSPSIG00000011971	EXT2 (ENSPSIG00000012310) #22	ALX4 (ENSPSIG00000012524) #23	CD82 (ENSPSIG00000012591) #24	TSPAN18 (ENSPSIG00000012726) #25	TP53I11 (ENSPSIG00000012730) #26	ENSPSIG00000012784 #27	ENSPSIG00000001826 #27	SYT13 (ENSPSIG00000012824) #28	ENSPSIG00000012857	ENSPSIG00000012922	ENSPSIG00000001830	CHST1 (ENSPSIG00000001832) #29	SLC35C1 (ENSPSIG00000012962) #30	CRY2 (ENSPSIG00000012972) #31	MAPK8IP1 (ENSPSIG00000013107) #32	PEX16 (ENSPSIG00000013249) #34
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00940000161051.b.e	ENSGT00390000013899.b	ENSGT00940000161262 #29	ENSGT00390000013315 #30	ENSGT00940000159073 #31	ENSGT00940000157089.B #32	ENSGT00390000017790 #34
Australian saltwater crocodile	MODERN SPECIES	64	PAMR1 (ENSCPRG00005011143)	TRIM44 (ENSCPRG00005011181)	LDLRAD3 (ENSCPRG00005011188) #7	COMMD9 (ENSCPRG00005011189) #8	PRR5L (ENSCPRG00005011191) #9	TRAF6 (ENSCPRG00005011195) #10	RAG1 (ENSCPRG00005011199) #11	RAG2 (ENSCPRG00005011203) #12	IFTAP (ENSCPRG00005011211) #13	LRRC4C (ENSCPRG00005011233) #14	API5 (ENSCPRG00005011242) #15	TTC17 (ENSCPRG00005011263) #16	HSD17B12 (ENSCPRG00005011319) #17	ALKBH3 (ENSCPRG00005011323) #18	ENSCPRG00005011338	EXT2 (ENSCPRG00005011390) #22	ALX4 (ENSCPRG00005011563) #23	CD82 (ENSCPRG00005011637) #24	TSPAN18 (ENSCPRG00005011666) #25	TP53I11 (ENSCPRG00005011670) #26	PRDM11 (ENSCPRG00005011712) #27	SYT13 (ENSCPRG00005011716) #28	ENSCPRG00005011755	ENSCPRG00005011758	ENSCPRG00005011761	ENSCPRG00005011790	CHST1 (ENSCPRG00005011793) #29	SLC35C1 (ENSCPRG00005011817) #30	CRY2 (ENSCPRG00005011818) #31	MAPK8IP1 (ENSCPRG00005011827) #32	PEX16 (ENSCPRG00005011836) #34
Aves	ANCESTRAL SPECIES	2	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
African ostrich	MODERN SPECIES	885								LRRC4C (ENSSCUG00000012479) #14	ENSSCUG00000012473	API5 (ENSSCUG00000012464) #15	TTC17 (ENSSCUG00000012452) #16	HSD17B12 (ENSSCUG00000012444) #17	ALKBH3 (ENSSCUG00000012438) #18	ENSSCUG00000012435	ENSSCUG00000012432	EXT2 (ENSSCUG00000012429) #22	ALX4 (ENSSCUG00000012428) #23	CD82 (ENSSCUG00000012426) #24	TSPAN18 (ENSSCUG00000012424) #25	TP53I11 (ENSSCUG00000012423) #26	PRDM11 (ENSSCUG00000012420) #27	SYT13 (ENSSCUG00000012417) #28	ENSSCUG00000012414	ENSSCUG00000017350	FUT8 (ENSSCUG00000017348)	C1QTNF4 (ENSSCUG00000017344)	FAM180B (ENSSCUG00000017343)	NDUFS3 (ENSSCUG00000017342)	KBTBD4 (ENSSCUG00000017340)	CELF1 (ENSSCUG00000017336)	RAPSN (ENSSCUG00000017332)
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00390000016768	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00950000183478	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Golden eagle	MODERN SPECIES	11	ENSACCG00020004954	ENSACCG00020004950	FJX1 (ENSACCG00020004943)	LDLRAD3 (ENSACCG00020004933) #7	COMMD9 (ENSACCG00020004925) #8	PRR5L (ENSACCG00020004911) #9	TRAF6 (ENSACCG00020004898) #10	RAG1 (ENSACCG00020004891) #11	IFTAP (ENSACCG00020004876) #13	LRRC4C (ENSACCG00020004870) #14	API5 (ENSACCG00020004854) #15	TTC17 (ENSACCG00020004828) #16	HSD17B12 (ENSACCG00020004804) #17	ALKBH3 (ENSACCG00020004784) #18	ENSACCG00020004761	EXT2 (ENSACCG00020004732) #22	ALX4 (ENSACCG00020004719) #23	CD82 (ENSACCG00020004713) #24	TSPAN18 (ENSACCG00020004701) #25	TP53I11 (ENSACCG00020004696) #26	PRDM11 (ENSACCG00020004687) #27	SYT13 (ENSACCG00020004674) #28	ENSACCG00020004664	FUT8 (ENSACCG00020004646)	C1QTNF4 (ENSACCG00020004637)	FAM180B (ENSACCG00020004632)	NDUFS3 (ENSACCG00020004622)	KBTBD4 (ENSACCG00020004612)	PTPMT1 (ENSACCG00020004607)	CELF1 (ENSACCG00020004593)	RAPSN (ENSACCG00020004581)
Kakapo	MODERN SPECIES	21	CD59 (ENSSHBG00005001975)	ENSSHBG00005001998	ENSSHBG00005002043	SHANK2 (ENSSHBG00005002111)	ENSSHBG00005002163	CTTN (ENSSHBG00005002184)	PPFIA1 (ENSSHBG00005002212)	FADD (ENSSHBG00005002226)	API5 (ENSSHBG00005002238) #15	TTC17 (ENSSHBG00005002263) #16	HSD17B12 (ENSSHBG00005002298) #17	ALKBH3 (ENSSHBG00005002317) #18	C11orf96 (ENSSHBG00005002329) #19	ENSSHBG00005002340	ENSSHBG00005002368	EXT2 (ENSSHBG00005002401) #22	ALX4 (ENSSHBG00005002416) #23	CD82 (ENSSHBG00005002436) #24	TSPAN18 (ENSSHBG00005002453) #25	TP53I11 (ENSSHBG00005002470) #26	PRDM11 (ENSSHBG00005002494) #27	SYT13 (ENSSHBG00005002521) #28	ENSSHBG00005002560	FUT8 (ENSSHBG00005002608)	ENSSHBG00005002630	C1QTNF4 (ENSSHBG00005002642)	ENSSHBG00005002652	NDUFS3 (ENSSHBG00005002665)	KBTBD4 (ENSSHBG00005002689)	PTPMT1 (ENSSHBG00005002711)	CELF1 (ENSSHBG00005002788)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000016768	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Great tit	MODERN SPECIES	25	FJX1 (ENSPMJG00000009999)	LDLRAD3 (ENSPMJG00000010000) #7	PRR5L (ENSPMJG00000010019) #9	COMMD9 (ENSPMJG00000010021) #8	TRAF6 (ENSPMJG00000010023) #10	RAG1 (ENSPMJG00000010025) #11	RAG2 (ENSPMJG00000010027) #12	ENSPMJG00000010028 #13	LRRC4C (ENSPMJG00000010037) #14	API5 (ENSPMJG00000000083) #15	TTC17 (ENSPMJG00000000119) #16	HSD17B12 (ENSPMJG00000000290) #17	ALKBH3 (ENSPMJG00000000332) #18	C11orf96 (ENSPMJG00000000347) #19	ENSPMJG00000000356	EXT2 (ENSPMJG00000000379) #22	ALX4 (ENSPMJG00000000438) #23	CD82 (ENSPMJG00000000467) #24	TSPAN18 (ENSPMJG00000000485) #25	TP53I11 (ENSPMJG00000000505) #26	PRDM11 (ENSPMJG00000000581) #27	SYT13 (ENSPMJG00000000628) #28	FUT8 (ENSPMJG00000000654)	C1QTNF4 (ENSPMJG00000000868)	ENSPMJG00000000873	NDUFS3 (ENSPMJG00000000879)	KBTBD4 (ENSPMJG00000000885)	PTPMT1 (ENSPMJG00000000896)	CELF1 (ENSPMJG00000000899)	PSMC3 (ENSPMJG00000000915)	ENSPMJG00000000920
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00960000189471	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00960000189471	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000154234.a	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00930000151992	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Common canary	MODERN SPECIES	3	SLC1A2 (ENSSCAG00000003675)	PAMR1 (ENSSCAG00000003670)	LDLRAD3 (ENSSCAG00000003644) #7	COMMD9 (ENSSCAG00000003638) #8	PRR5L (ENSSCAG00000003631) #9	TRAF6 (ENSSCAG00000003629) #10	RAG1 (ENSSCAG00000003627) #11	RAG2 (ENSSCAG00000003622) #12	IFTAP (ENSSCAG00000003620) #13	LRRC4C (ENSSCAG00000003606) #14	API5 (ENSSCAG00000003585) #15	TTC17 (ENSSCAG00000003561) #16	HSD17B12 (ENSSCAG00000003538) #17	ALKBH3 (ENSSCAG00000003531) #18	ENSSCAG00000003525	EXT2 (ENSSCAG00000003516) #22	ALX4 (ENSSCAG00000003511) #23	CD82 (ENSSCAG00000003496) #24	TSPAN18 (ENSSCAG00000003489) #25	TP53I11 (ENSSCAG00000003483) #26	ENSSCAG00000003478	PRDM11 (ENSSCAG00000003474) #27	SYT13 (ENSSCAG00000003465) #28	ENSSCAG00000003458	FUT8 (ENSSCAG00000003442)	C1QTNF4 (ENSSCAG00000003436)	ENSSCAG00000003433	NDUFS3 (ENSSCAG00000003420)	KBTBD4 (ENSSCAG00000003415)	PTPMT1 (ENSSCAG00000003409)	CELF1 (ENSSCAG00000003397)
Zebra finch	MODERN SPECIES	27	COMMD9 (ENSTGUG00000010117) #8	PRR5L (ENSTGUG00000010127) #9	TRAF6 (ENSTGUG00000023943) #10	ENSTGUG00000019722	RAG1 (ENSTGUG00000010147) #11	RAG2 (ENSTGUG00000010148) #12	ENSTGUG00000010152 #13	LRRC4C (ENSTGUG00000010154) #14	ENSTGUG00000023168	API5 (ENSTGUG00000010156) #15	TTC17 (ENSTGUG00000010175) #16	HSD17B12 (ENSTGUG00000010212) #17	ALKBH3 (ENSTGUG00000010222) #18	C11orf96 (ENSTGUG00000010210) #19	ENSTGUG00000010232	EXT2 (ENSTGUG00000010249) #22	ALX4 (ENSTGUG00000022675) #23	CD82 (ENSTGUG00000010270) #24	TSPAN18 (ENSTGUG00000028163) #25	TP53I11 (ENSTGUG00000019013) #26	PRDM11 (ENSTGUG00000028029) #27	SYT13 (ENSTGUG00000027086) #28	FUT8 (ENSTGUG00000010311)	C1QTNF4 (ENSTGUG00000010341)	ENSTGUG00000019362	NDUFS3 (ENSTGUG00000010343)	KBTBD4 (ENSTGUG00000010361)	PTPMT1 (ENSTGUG00000010369)	CELF1 (ENSTGUG00000010377)	RAPSN (ENSTGUG00000010400)	PSMC3 (ENSTGUG00000028944)
Medium ground finch	MODERN SPECIES	15	PAMR1 (ENSGFOG00000006647)	ENSGFOG00000006638	LDLRAD3 (ENSGFOG00000006635) #7	COMMD9 (ENSGFOG00000006633) #8	PRR5L (ENSGFOG00000006629) #9	TRAF6 (ENSGFOG00000006624) #10	RAG1 (ENSGFOG00000006622) #11	RAG2 (ENSGFOG00000006600) #12	IFTAP (ENSGFOG00000006589) #13	LRRC4C (ENSGFOG00000006584) #14	API5 (ENSGFOG00000006568) #15	TTC17 (ENSGFOG00000006550) #16	HSD17B12 (ENSGFOG00000006352) #17	ALKBH3 (ENSGFOG00000006323) #18	ENSGFOG00000006309	EXT2 (ENSGFOG00000006274) #22	ALX4 (ENSGFOG00000006267) #23	CD82 (ENSGFOG00000006256) #24	TSPAN18 (ENSGFOG00000006246) #25	TP53I11 (ENSGFOG00000006237) #26	PRDM11 (ENSGFOG00000006231) #27	SYT13 (ENSGFOG00000006222) #28	ENSGFOG00000006183	FUT8 (ENSGFOG00000006169)	C1QTNF4 (ENSGFOG00000006164)	ENSGFOG00000006160	NDUFS3 (ENSGFOG00000006152)	KBTBD4 (ENSGFOG00000006147)	CELF1 (ENSGFOG00000006114)	RAPSN (ENSGFOG00000006104)	PSMC3 (ENSGFOG00000006090)
Flycatcher	MODERN SPECIES	24	SLC1A2 (ENSFALG00000012468)	PAMR1 (ENSFALG00000012457)	LDLRAD3 (ENSFALG00000025257) #7	PRR5L (ENSFALG00000012439) #9	TRAF6 (ENSFALG00000012435) #10	RAG1 (ENSFALG00000014372) #11	RAG2 (ENSFALG00000014365) #12	IFTAP (ENSFALG00000012432) #13	LRRC4C (ENSFALG00000014357) #14	API5 (ENSFALG00000012414) #15	TTC17 (ENSFALG00000012400) #16	HSD17B12 (ENSFALG00000012377) #17	ENSFALG00000027931 #18	C11orf96 (ENSFALG00000026575) #19	ENSFALG00000012325	EXT2 (ENSFALG00000012307) #22	ALX4 (ENSFALG00000012294) #23	CD82 (ENSFALG00000012287) #24	TSPAN18 (ENSFALG00000012281) #25	TP53I11 (ENSFALG00000012278) #26	ENSFALG00000027620	PRDM11 (ENSFALG00000012271) #27	ENSFALG00000028360	SYT13 (ENSFALG00000012266) #28	ENSFALG00000012241	ENSFALG00000006418	C1QTNF4 (ENSFALG00000006415)	FAM180B (ENSFALG00000014206)	KBTBD4 (ENSFALG00000006408)	NDUFS3 (ENSFALG00000006411)	PTPMT1 (ENSFALG00000006406)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00960000189471	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Anatidae	ANCESTRAL SPECIES	50	ENSGT00960000189471	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620 #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667 #25	ENSGT00390000017249 #26	ENSGT00940000159837 #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00990000214181	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970
Pink-footed goose	MODERN SPECIES	39	LDLRAD3 (ENSABRG00000017763) #7	COMMD9 (ENSABRG00000017756) #8	PRR5L (ENSABRG00000017749) #9	TRAF6 (ENSABRG00000017746) #10	RAG1 (ENSABRG00000017745) #11	RAG2 (ENSABRG00000017743) #12	IFTAP (ENSABRG00000017742) #13	ENSABRG00000017736	LRRC4C (ENSABRG00000017724) #14	API5 (ENSABRG00000017703) #15	TTC17 (ENSABRG00000017698) #16	HSD17B12 (ENSABRG00000017694) #17	ALKBH3 (ENSABRG00000017692) #18	C11orf96 (ENSABRG00000017690) #19	ENSABRG00000017680	EXT2 (ENSABRG00000017677) #22	ALX4 (ENSABRG00000017675) #23	CD82 (ENSABRG00000017668) #24	TSPAN18 (ENSABRG00000017662) #25	TP53I11 (ENSABRG00000017658) #26	PRDM11 (ENSABRG00000017655) #27	SYT13 (ENSABRG00000017650) #28	ENSABRG00000017633	FUT8 (ENSABRG00000017622)	C1QTNF4 (ENSABRG00000017618)	FAM180B (ENSABRG00000017617)	NDUFS3 (ENSABRG00000017605)	KBTBD4 (ENSABRG00000017600)	PTPMT1 (ENSABRG00000017594)	CELF1 (ENSABRG00000017589)	RAPSN (ENSABRG00000017555)
Duck	MODERN SPECIES	23	PRR5L (ENSAPLG00000013479) #9	TRAF6 (ENSAPLG00000013488) #10	RAG1 (ENSAPLG00000011756) #11	RAG2 (ENSAPLG00000011769) #12	IFTAP (ENSAPLG00000013519) #13	ENSAPLG00000023896	ENSAPLG00000018386	LRRC4C (ENSAPLG00000001447) #14	ENSAPLG00000030081	API5 (ENSAPLG00000008406) #15	TTC17 (ENSAPLG00000007273) #16	HSD17B12 (ENSAPLG00000026765) #17	ALKBH3 (ENSAPLG00000019115) #18	C11orf96 (ENSAPLG00000026568) #19	ENSAPLG00000007401	EXT2 (ENSAPLG00000007139) #22	ALX4 (ENSAPLG00000007118) #23	CD82 (ENSAPLG00000006580) #24	TSPAN18 (ENSAPLG00000006371) #25	PRDM11 (ENSAPLG00000006096) #27	SYT13 (ENSAPLG00000006046) #28	ENSAPLG00000005604	FUT8 (ENSAPLG00000009017)	ENSAPLG00000024392	C1QTNF4 (ENSAPLG00000000930)	FAM180B (ENSAPLG00000018391)	KBTBD4 (ENSAPLG00000008802)	NDUFS3 (ENSAPLG00000008862)	CELF1 (ENSAPLG00000020823)	RAPSN (ENSAPLG00000008323)	PSMC3 (ENSAPLG00000008009)
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00960000189471	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196 #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00390000016821 #19	ENSGT00940000164760	ENSGT00940000156620.m #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667.e #25	ENSGT00390000017249 #26	ENSGT00940000159837.n #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785
Japanese quail	MODERN SPECIES	23	SERGEF (ENSCJPG00005010791)	KCNC1 (ENSCJPG00005010792)	ENSCJPG00005010796	ENSCJPG00005010797	PRR5L (ENSCJPG00005010799) #9	TRAF6 (ENSCJPG00005010800) #10	RAG1 (ENSCJPG00005010801) #11	IFTAP (ENSCJPG00005010802) #13	LRRC4C (ENSCJPG00005010806) #14	API5 (ENSCJPG00005010812) #15	TTC17 (ENSCJPG00005010813) #16	HSD17B12 (ENSCJPG00005010818) #17	ALKBH3 (ENSCJPG00005010819) #18	C11orf96 (ENSCJPG00005010820) #19	ENSCJPG00005010821	EXT2 (ENSCJPG00005010822) #22	ALX4 (ENSCJPG00005010823) #23	CD82 (ENSCJPG00005010825) #24	TSPAN18 (ENSCJPG00005010826) #25	TP53I11 (ENSCJPG00005010827) #26	PRDM11 (ENSCJPG00005010830) #27	SYT13 (ENSCJPG00005010831) #28	ENSCJPG00005010832	FUT8 (ENSCJPG00005010835)	C1QTNF4 (ENSCJPG00005010836)	FAM180B (ENSCJPG00005010837)	NDUFS3 (ENSCJPG00005010838)	KBTBD4 (ENSCJPG00005010839)	PTPMT1 (ENSCJPG00005010840)	CELF1 (ENSCJPG00005010841)	RAPSN (ENSCJPG00005010842)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000016768	ENSGT00960000189471	ENSGT00940000160574 #7	ENSGT00390000006218 #8	ENSGT00530000063981.b #9	ENSGT00940000155426 #10	ENSGT00390000008679 #11	ENSGT00390000012559 #12	ENSGT00390000013149 #13	ENSGT00940000157405 #14	ENSGT00390000010991 #15	ENSGT00390000006196.c #16	ENSGT00940000154860 #17	ENSGT00940000157226 #18	ENSGT00940000164760	ENSGT00940000156620.m #22	ENSGT00940000159662 #23	ENSGT00940000158481 #24	ENSGT00940000157667.e #25	ENSGT00390000017249 #26	ENSGT00940000159837.n #27	ENSGT00940000160226 #28	ENSGT00940000161051.b.d	ENSGT00530000063737	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785
Chicken	MODERN SPECIES	34	FJX1 (ENSGALG00010026537)	ENSGALG00010025143	LDLRAD3 (ENSGALG00010025163) #7	COMMD9 (ENSGALG00010025170) #8	PRR5L (ENSGALG00010025190) #9	TRAF6 (ENSGALG00010025204) #10	RAG1 (ENSGALG00010025211) #11	RAG2 (ENSGALG00010025239) #12	C11orf74 (ENSGALG00010025248) #13	LRRC4C (ENSGALG00010023696) #14	API5 (ENSGALG00010021048) #15	TTC17 (ENSGALG00010021074) #16	HSD17B12 (ENSGALG00010019546) #17	ALKBH3 (ENSGALG00010019592) #18	ENSGALG00010019670	EXT2 (ENSGALG00010019800) #22	ALX4 (ENSGALG00010019838) #23	CD82 (ENSGALG00010021703) #24	TSPAN18 (ENSGALG00010021714) #25	TP53I11 (ENSGALG00010021721) #26	PRDM11 (ENSGALG00010021738) #27	SYT13 (ENSGALG00010021743) #28	ASTL (ENSGALG00010021777)	FUT8 (ENSGALG00010021805)	C1QTNF4 (ENSGALG00010021945)	FAM180B (ENSGALG00010021988)	KBTBD4 (ENSGALG00010022032)	NDUFS3 (ENSGALG00010023836)	PTPMT1 (ENSGALG00010022073)	CELF1 (ENSGALG00010022161)	RAPSN (ENSGALG00010022229)
Turkey	MODERN SPECIES	25	KBTBD4 (ENSMGAG00000010626)	ENSMGAG00000010627	NDUFS3 (ENSMGAG00000010620)	C1QTNF4 (ENSMGAG00000022056)	ENSMGAG00000022471	ENSMGAG00000010576	ENSMGAG00000010571 #28	ENSMGAG00000010570 #27	ENSMGAG00000010565 #27	ENSMGAG00000019078 #25	ENSMGAG00000018166 #26	ENSMGAG00000010543 #25	ENSMGAG00000010519 #24	ENSMGAG00000021480 #23	ENSMGAG00000010518	ENSMGAG00000010502 #22	ENSMGAG00000010485	ENSMGAG00000010479 #18	ENSMGAG00000023007 #17	ENSMGAG00000017965	ENSMGAG00000010477 #17	ENSMGAG00000020200 #16	ENSMGAG00000010440 #16	ENSMGAG00000010414 #15	TMEM87A (ENSMGAG00000011436)	GANC (ENSMGAG00000011445)	CAPN3 (ENSMGAG00000011468)	ZNF106 (ENSMGAG00000011512)	SNAP23 (ENSMGAG00000011528)	LRRC57 (ENSMGAG00000011547)	ENSMGAG00000011559
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000156620.n #22
Japanese quail	MODERN SPECIES	617																ENSCJPG00005002851 #22