Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163987	ENSGT00940000157140.b.a.b.a	ENSGT00520000058517	ENSGT00940000161273	ENSGT00940000165990.b.a	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000162562.A.a.b	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546	ENSGT00530000063821.b.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437 #27	ENSGT00390000000797 #28	ENSGT00730000110988 #29	ENSGT00950000182917.a.b.a #30	ENSGT00940000155751 #31	ENSGT00950000182915.b.b.b.a #32	ENSGT00940000154690 #33	ENSGT00940000155026 #34	ENSGT00940000159943 #36	ENSGT00390000002443	ENSGT00900000142372 #37	ENSGT00530000063273.a
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163987	ENSGT00940000157140.b.a.b.a	ENSGT00520000058517	ENSGT00940000161273	ENSGT00940000165990.b.a	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000162562.A.a.b	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546	ENSGT00530000063821.b.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437 #27	ENSGT00390000000797 #28	ENSGT00730000110988 #29	ENSGT00950000182917.a.b.a #30	ENSGT00940000155751 #31	ENSGT00950000182915.b.b.b.a #32	ENSGT00940000154690 #33	ENSGT00940000155026 #34	ENSGT00940000159943 #36	ENSGT00390000002443	ENSGT00900000142372 #37	ENSGT00530000063273.a
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163987	ENSGT00940000157140.b.a.b.a	ENSGT00520000058517	ENSGT00940000161273	ENSGT00940000165990.b.a	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000162562.A.a.b	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546	ENSGT00530000063821.b.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437 #27	ENSGT00390000000797 #28	ENSGT00730000110988 #29	ENSGT00950000182917.a.b.a #30	ENSGT00940000155751 #31	ENSGT00950000182915.b.b.b.a #32	ENSGT00940000154690 #33	ENSGT00940000155026 #34	ENSGT00940000159943 #36	ENSGT00390000002443	ENSGT00900000142372 #37	ENSGT00530000063273.a
Steppe mouse	MODERN SPECIES	3208																Elavl4 (ENSMSIG00000010996) #22	ENSMSIG00000010976 #23	Dmrta2 (ENSMSIG00000010966) #24	Faf1 (ENSMSIG00000010918) #25	Cdkn2c (ENSMSIG00000010907) #26	ENSMSIG00000010900 #27	4930522H14Rik (ENSMSIG00000010887) #28	Rnf11 (ENSMSIG00000010854) #29	Ttc39a (ENSMSIG00000010745) #30	Eps15 (ENSMSIG00000010254) #31	Calr4 (ENSMSIG00000010220) #32	Osbpl9 (ENSMSIG00000010057) #33	Nrd1 (ENSMSIG00000009746) #34	ENSMSIG00000009731 #35	Rab3b (ENSMSIG00000009714) #36	ENSMSIG00000009709 #37
spretus	MODERN SPECIES	13	Cmpk1 (MGP_SPRETEiJ_G0027274)	Foxe3 (MGP_SPRETEiJ_G0027273)	Foxd2 (MGP_SPRETEiJ_G0027272)	MGP_SPRETEiJ_G0027271	Trabd2b (MGP_SPRETEiJ_G0027270)	MGP_SPRETEiJ_G0027269	Skint10 (MGP_SPRETEiJ_G0027267)	Skint2 (MGP_SPRETEiJ_G0027266)	Skint1 (MGP_SPRETEiJ_G0027265)	MGP_SPRETEiJ_G0027264	Skint7 (MGP_SPRETEiJ_G0027263)	Slc5a9 (MGP_SPRETEiJ_G0027262)	Spata6 (MGP_SPRETEiJ_G0027261)	Bend5 (MGP_SPRETEiJ_G0027260)	Agbl4 (MGP_SPRETEiJ_G0027259)	Elavl4 (MGP_SPRETEiJ_G0027258) #22	Dmrta2 (MGP_SPRETEiJ_G0027257) #24	Faf1 (MGP_SPRETEiJ_G0027256) #25	Cdkn2c (MGP_SPRETEiJ_G0027255) #26	4930522H14Rik (MGP_SPRETEiJ_G0027254) #28	Rnf11 (MGP_SPRETEiJ_G0027253) #29	Ttc39a (MGP_SPRETEiJ_G0027252) #30	Eps15 (MGP_SPRETEiJ_G0027251) #31	Calr4 (MGP_SPRETEiJ_G0027250) #32	Osbpl9 (MGP_SPRETEiJ_G0027249) #33	Nrd1 (MGP_SPRETEiJ_G0027248) #34	Rab3b (MGP_SPRETEiJ_G0027247) #36	Kti12 (MGP_SPRETEiJ_G0027246)	MGP_SPRETEiJ_G0027245 #37	Txndc12 (MGP_SPRETEiJ_G0027244)	MGP_SPRETEiJ_G0027243
Mouse	MODERN SPECIES	13	Skint11 (ENSMUSG00000057977)	Skint5 (ENSMUSG00000078598)	Skint6 (ENSMUSG00000087194)	Skint10 (ENSMUSG00000048766)	Skint2 (ENSMUSG00000034359)	Skint9 (ENSMUSG00000049972)	Skint3 (ENSMUSG00000070868)	Skint4 (ENSMUSG00000055960)	Skint1 (ENSMUSG00000089773)	Skint7 (ENSMUSG00000049214)	Skint8 (ENSMUSG00000078599)	Slc5a9 (ENSMUSG00000028544)	Spata6 (ENSMUSG00000034401)	Bend5 (ENSMUSG00000028545)	Agbl4 (ENSMUSG00000061298)	Elavl4 (ENSMUSG00000028546) #22	Dmrta2 (ENSMUSG00000047143) #24	Faf1 (ENSMUSG00000010517) #25	Cdkn2c (ENSMUSG00000028551) #26	4930522H14Rik (ENSMUSG00000060491) #28	Rnf11 (ENSMUSG00000028557) #29	Ttc39a (ENSMUSG00000028555) #30	Eps15 (ENSMUSG00000028552) #31	Calr4 (ENSMUSG00000028558) #32	Osbpl9 (ENSMUSG00000028559) #33	Nrd1 (ENSMUSG00000053510) #34	Rab3b (ENSMUSG00000003411) #36	Kti12 (ENSMUSG00000073775)	Txndc12 (ENSMUSG00000028567)	Btf3l4 (ENSMUSG00000028568)	Zfyve9 (ENSMUSG00000034557)
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026305	Tal1 (MGP_CAROLIEiJ_G0026304)	Stil (MGP_CAROLIEiJ_G0026303)	Cmpk1 (MGP_CAROLIEiJ_G0026302)	Foxe3 (MGP_CAROLIEiJ_G0026301)	Foxd2 (MGP_CAROLIEiJ_G0026300)	Trabd2b (MGP_CAROLIEiJ_G0026299)	Skint10 (MGP_CAROLIEiJ_G0026298)	MGP_CAROLIEiJ_G0026297	Skint1 (MGP_CAROLIEiJ_G0026296)	MGP_CAROLIEiJ_G0026294	Slc5a9 (MGP_CAROLIEiJ_G0026293)	Spata6 (MGP_CAROLIEiJ_G0026292)	Bend5 (MGP_CAROLIEiJ_G0026291)	Agbl4 (MGP_CAROLIEiJ_G0026290)	Elavl4 (MGP_CAROLIEiJ_G0026289) #22	Dmrta2 (MGP_CAROLIEiJ_G0026288) #24	Faf1 (MGP_CAROLIEiJ_G0026287) #25	Cdkn2c (MGP_CAROLIEiJ_G0026286) #26	4930522H14Rik (MGP_CAROLIEiJ_G0026285) #28	Rnf11 (MGP_CAROLIEiJ_G0026284) #29	Ttc39a (MGP_CAROLIEiJ_G0026283) #30	Eps15 (MGP_CAROLIEiJ_G0026282) #31	MGP_CAROLIEiJ_G0026281 #32	Osbpl9 (MGP_CAROLIEiJ_G0026280) #33	Nrd1 (MGP_CAROLIEiJ_G0026279) #34	Rab3b (MGP_CAROLIEiJ_G0026278) #36	Kti12 (MGP_CAROLIEiJ_G0026277)	MGP_CAROLIEiJ_G0026276 #37	Txndc12 (MGP_CAROLIEiJ_G0026275)	MGP_CAROLIEiJ_G0026274