Bilateria	ANCESTRAL SPECIES																	ENSGT00940000157399 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000157399 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000157399 #22
Gnathostomata	ANCESTRAL SPECIES	55	ENSGT00940000171673	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042 #20	ENSGT00940000157399 #22
Euteleostomi	ANCESTRAL SPECIES	48	ENSGT00940000155136	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000155042.a.b ##20	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33
Sarcopterygii	ANCESTRAL SPECIES	100	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162805	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.a.a	ENSGT00390000006387	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00390000012765	ENSGT00390000011196	ENSGT00940000161527	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Amniota	ANCESTRAL SPECIES	9	ENSGT00390000011196	ENSGT00940000161527.c	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Mammalia	ANCESTRAL SPECIES	47	ENSGT00390000012765	ENSGT00390000016446	ENSGT00390000011196	ENSGT00980000201734	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000159943 #33	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Theria	ANCESTRAL SPECIES	3	ENSGT00390000012765	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Eutheria	ANCESTRAL SPECIES		ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Primates	ANCESTRAL SPECIES	4	ENSGT00940000160927.e	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296.jb.a #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00950000183073.b.p	ENSGT00940000154319.u.b.b	ENSGT00940000155751 #30	ENSGT00940000154690.ub.b ##31	ENSGT00940000155026 #32	ENSGT00940000159943 #33
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000160927.e	ENSGT00940000163504.d ##7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00950000183073.b.p	ENSGT00940000154319.u.b.b	ENSGT00940000155751 #30	ENSGT00940000154690.ub.b ##31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.jb.a #35
Vervet Monkey	MODERN SPECIES	12	CYP4A22 (ENSCSAG00000001245) #7	ENSCSAG00000000142 #8	PDZK1IP1 (ENSCSAG00000001246) #9	TAL1 (ENSCSAG00000001247) #10	STIL (ENSCSAG00000001248) #11	CMPK1 (ENSCSAG00000001249) #12	FOXE3 (ENSCSAG00000000143) #13	FOXD2 (ENSCSAG00000000144) #14	TRABD2B (ENSCSAG00000001250) #15	ENSCSAG00000001251 #16	ENSCSAG00000001252 #17	SLC5A9 (ENSCSAG00000001253) #18	SPATA6 (ENSCSAG00000001254) #19	ENSCSAG00000001255 #20	BEND5 (ENSCSAG00000001256) #21	ELAVL4 (ENSCSAG00000001257) #22	ENSCSAG00000001258 #23	DMRTA2 (ENSCSAG00000001259) #24	FAF1 (ENSCSAG00000001260) #25	CDKN2C (ENSCSAG00000001261) #26	C1orf185 (ENSCSAG00000001262) #27	RNF11 (ENSCSAG00000001264) #28	TTC39A (ENSCSAG00000001265) #29	EPS15 (ENSCSAG00000001266) #30	OSBPL9 (ENSCSAG00000001267) #31	NRDC (ENSCSAG00000001268) #32	RAB3B (ENSCSAG00000001269) #33	TXNDC12 (ENSCSAG00000001270) #34	BTF3L4 (ENSCSAG00000001271) #35	ENSCSAG00000001272 #36	ZFYVE9 (ENSCSAG00000001273) #37
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000163504.c.a #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000157399 #22	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000154326.a.a.h.f	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00910000146631	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00950000183073.b.p	ENSGT00940000154319.u.b.b	ENSGT00940000155751 #30
Macaca	ANCESTRAL SPECIES		ENSGT00940000163504.c.a #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589.g.b #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000157399 #22	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000154326.a.a.h.f	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00910000146631	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690.ub.b ##31	ENSGT00940000155026 #32
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000163504.c.b #7	ENSGT00940000160927.e	ENSGT00940000163504.c.a #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589.h #12	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.b.b.d	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000157399 #22	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT01030000238095.a.a.b.b	ENSGT00940000163721	ENSGT00950000182917.a.b.a #29	ENSGT00940000154319.u.b.b	ENSGT00940000155751 #30	ENSGT00940000154690.ub.b ##31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00980000202150.b
Crab-eating macaque	MODERN SPECIES		CYP4A11 (ENSMFAG00000032544) #7	CYP4X1 (ENSMFAG00000000631)	CYP4A45P (ENSMFAG00000042796) #7	PDZK1IP1 (ENSMFAG00000002324) #9	TAL1 (ENSMFAG00000047639) #10	ENSMFAG00000063835	STIL (ENSMFAG00000024408) #11	ENSMFAG00000035854 #12	TRABD2B (ENSMFAG00000003902) #15	ENSMFAG00000003658 #16	ENSMFAG00000049065 #17	SLC5A9 (ENSMFAG00000035463) #18	ENSMFAG00000051495	ENSMFAG00000030500	AGBL4 (ENSMFAG00000032630) #20	ELAVL4 (ENSMFAG00000039866) #22	ENSMFAG00000020472	DMRTA2 (ENSMFAG00000062675) #24	FAF1 (ENSMFAG00000031563) #25	CDKN2C (ENSMFAG00000024172) #26	C1orf185 (ENSMFAG00000000049) #27	ENSMFAG00000003545	ENSMFAG00000047249	ENSMFAG00000003664	TTC39A (ENSMFAG00000037823) #29	ENSMFAG00000053090	ENSMFAG00000038258	EPS15 (ENSMFAG00000044060) #30	OSBPL9 (ENSMFAG00000043512) ##31	NRDC (ENSMFAG00000036148) #32	RAB3B (ENSMFAG00000056941) #33
Rhesus	MODERN SPECIES		CYP4A45 (ENSMMUG00000019871) #7	CYP4X1 (ENSMMUG00000018867)	CYP4A11 (ENSMMUG00000032143) #7	PDZK1IP1 (ENSMMUG00000061850) #10	STIL (ENSMMUG00000020389) #11	CMPK1 (ENSMMUG00000017375) #12	FOXE3 (ENSMMUG00000064635) #13	FOXD2 (ENSMMUG00000018556) #14	ENSMMUG00000057159	TRABD2B (ENSMMUG00000032139) #15	ENSMMUG00000049296	SLC5A9 (ENSMMUG00000007558) #18	SPATA6 (ENSMMUG00000009282) #19	ENSMMUG00000056990	BEND5 (ENSMMUG00000008828) #20	ELAVL4 (ENSMMUG00000021933) #22	DMRTA2 (ENSMMUG00000052908) #24	FAF1 (ENSMMUG00000019056) #25	CDKN2C (ENSMMUG00000019057) #26	C1H1orf185 (ENSMMUG00000006651) #27	ENSMMUG00000058388	RNF11 (ENSMMUG00000012112)	TTC39A (ENSMMUG00000004564) #29	ENSMMUG00000058438	ENSMMUG00000043311	EPS15 (ENSMMUG00000012055) #30	OSBPL9 (ENSMMUG00000004735) ##31	NRDC (ENSMMUG00000004738) #32	ENSMMUG00000047290	RAB3B (ENSMMUG00000014035) #33	ENSMMUG00000061924
Pig-tailed macaque	MODERN SPECIES	217	ENSMNEG00000026248 #7	PDZK1IP1 (ENSMNEG00000034766) #9	TAL1 (ENSMNEG00000043031) #10	STIL (ENSMNEG00000044743) #11	CMPK1 (ENSMNEG00000037131) #12	FOXE3 (ENSMNEG00000009558) #13	FOXD2 (ENSMNEG00000024922) #14	TRABD2B (ENSMNEG00000028952) #15	ENSMNEG00000023828 #16	ENSMNEG00000042343 #17	SLC5A9 (ENSMNEG00000028284) #18	SPATA6 (ENSMNEG00000036437) #19	AGBL4 (ENSMNEG00000028894) #20	BEND5 (ENSMNEG00000030902) #21	ENSMNEG00000030170	ELAVL4 (ENSMNEG00000035576) #22	ENSMNEG00000021112	ENSMNEG00000014551	ENSMNEG00000029667	DMRTA2 (ENSMNEG00000036377) #24	FAF1 (ENSMNEG00000029437) #25	CDKN2C (ENSMNEG00000031706) #26	ENSMNEG00000039144	ENSMNEG00000042352	C1orf185 (ENSMNEG00000034636) #27	ENSMNEG00000043444	RNF11 (ENSMNEG00000044248) #28	TTC39A (ENSMNEG00000043223) #29	EPS15 (ENSMNEG00000032927) #30	ENSMNEG00000044016	OSBPL9 (ENSMNEG00000045152) ##31
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000160927.e	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000157399 #22	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000154326.a.a.h.f	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00910000146631	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00950000183073.b.p	ENSGT00940000154319.u.b.b	ENSGT00940000155751 #30
Cercopithecinae_d	ANCESTRAL SPECIES	19															ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000157399 #22	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000154326.a.a.h.f	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00910000146631	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00950000183073.b.p	ENSGT00940000154319.u.b.b	ENSGT00940000155751 #30
Sooty mangabey	MODERN SPECIES	357													ENSCATG00000037935 #21	ENSCATG00000033836	ENSCATG00000037973 #20	ELAVL4 (ENSCATG00000029867) #22	ENSCATG00000043475	ENSCATG00000036372	ENSCATG00000033016	DMRTA2 (ENSCATG00000036373) #24	FAF1 (ENSCATG00000006210) #25	ENSCATG00000030251	CDKN2C (ENSCATG00000028763) #26	C1orf185 (ENSCATG00000035564) #27	ENSCATG00000033774	RNF11 (ENSCATG00000015957) #28	TTC39A (ENSCATG00000037731) #29	ENSCATG00000040273	ENSCATG00000034910	EPS15 (ENSCATG00000040033) #30
Drill	MODERN SPECIES	285															ENSMLEG00000035489	ELAVL4 (ENSMLEG00000028616) #22	ENSMLEG00000026564	ENSMLEG00000032385	ENSMLEG00000003360	DMRTA2 (ENSMLEG00000021929) #24	FAF1 (ENSMLEG00000028226) #25
Olive baboon	MODERN SPECIES		ENSPANG00000039694 #7	ENSPANG00000044971	PDZK1IP1 (ENSPANG00000035359) #9	TAL1 (ENSPANG00000009893) #10	STIL (ENSPANG00000020258) #11	CMPK1 (ENSPANG00000019968) #12	FOXE3 (ENSPANG00000011983) #13	FOXD2 (ENSPANG00000017227) #14	TRABD2B (ENSPANG00000012233) #15	ENSPANG00000001010 #16	ENSPANG00000011532 #17	ENSPANG00000005788	ENSPANG00000021593	SPATA6 (ENSPANG00000014017) #19	AGBL4 (ENSPANG00000034366) #20	ELAVL4 (ENSPANG00000017754) #22	ENSPANG00000033296	DMRTA2 (ENSPANG00000012592) #24	FAF1 (ENSPANG00000015883) #25	CDKN2C (ENSPANG00000035708) #26	C1orf185 (ENSPANG00000005045) #27	ENSPANG00000029418	RNF11 (ENSPANG00000019410) #28	TTC39A (ENSPANG00000018680) #29	EPS15 (ENSPANG00000002942) #30	ENSPANG00000032379	ENSPANG00000039561	OSBPL9 (ENSPANG00000005884) ##31	NRDC (ENSPANG00000017224) #32	RAB3B (ENSPANG00000018024) #33	TXNDC12 (ENSPANG00000024234) #34
Rhinopithecus	ANCESTRAL SPECIES	703																ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25
Golden snub-nosed monkey	MODERN SPECIES	809																ELAVL4 (ENSRROG00000044786) #22	ENSRROG00000039410	ENSRROG00000045215	DMRTA2 (ENSRROG00000013168) #24	FAF1 (ENSRROG00000035565) #25
Black snub-nosed monkey	MODERN SPECIES	449																ELAVL4 (ENSRBIG00000043810) #22	ENSRBIG00000030797	ENSRBIG00000031795	DMRTA2 (ENSRBIG00000031089) #24	FAF1 (ENSRBIG00000033052) #25	ENSRBIG00000029162	ADCYAP1 (ENSRBIG00000033794)	ENSRBIG00000040234	ENOSF1 (ENSRBIG00000034196)	TYMS (ENSRBIG00000040749)	CLUL1 (ENSRBIG00000030751)	CETN1 (ENSRBIG00000006152)	COLEC12 (ENSRBIG00000032206)	THOC1 (ENSRBIG00000033738)	USP14 (ENSRBIG00000044842)	ROCK1 (ENSRBIG00000028817)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000160927.f	ENSGT00940000163504.a.a #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34
Gorilla	MODERN SPECIES		ENSGGOG00000021983 #7	CYP4X1 (ENSGGOG00000000133)	ENSGGOG00000001801	ENSGGOG00000015363 #7	PDZK1IP1 (ENSGGOG00000011765) #9	TAL1 (ENSGGOG00000043148) #10	STIL (ENSGGOG00000000512) #11	ENSGGOG00000039974 #12	TRABD2B (ENSGGOG00000037702) #15	ENSGGOG00000044020 #17	SLC5A9 (ENSGGOG00000012140) #18	ENSGGOG00000028320	SPATA6 (ENSGGOG00000001284) #19	AGBL4 (ENSGGOG00000043434) #20	BEND5 (ENSGGOG00000003566) #21	ELAVL4 (ENSGGOG00000000634) #22	ENSGGOG00000024575	ENSGGOG00000013269 #24	FAF1 (ENSGGOG00000013273) #25	CDKN2C (ENSGGOG00000017023) #26	C1orf185 (ENSGGOG00000015902) #27	ENSGGOG00000040829	RNF11 (ENSGGOG00000004919) #28	ENSGGOG00000025934	TTC39A (ENSGGOG00000012965) #29	EPS15 (ENSGGOG00000006160) #30	OSBPL9 (ENSGGOG00000004787) #31	NRDC (ENSGGOG00000004793) #32	RAB3B (ENSGGOG00000001562) #33	TXNDC12 (ENSGGOG00000010208) #34	BTF3L4 (ENSGGOG00000010677) #35
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000160927.f	ENSGT00940000163504.b #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34
Human	MODERN SPECIES		CYP4A11 (ENSG00000187048) #7	CYP4X1 (ENSG00000186377)	CYP4Z1 (ENSG00000186160)	CYP4A22 (ENSG00000162365) #7	PDZK1IP1 (ENSG00000162366) #9	TAL1 (ENSG00000162367) #10	STIL (ENSG00000123473) #11	CMPK1 (ENSG00000162368) #12	FOXE3 (ENSG00000186790) #13	FOXD2 (ENSG00000186564) #14	TRABD2B (ENSG00000269113) #15	SLC5A9 (ENSG00000117834) #18	SPATA6 (ENSG00000132122) #19	AGBL4 (ENSG00000186094) #20	BEND5 (ENSG00000162373) #21	ELAVL4 (ENSG00000162374) #22	DMRTA2 (ENSG00000142700) #24	FAF1 (ENSG00000185104) #25	CDKN2C (ENSG00000123080) #26	C1orf185 (ENSG00000204006) #27	RNF11 (ENSG00000123091) #28	TTC39A (ENSG00000085831) #29	EPS15 (ENSG00000085832) #30	OSBPL9 (ENSG00000117859) #31	NRDC (ENSG00000078618) #32	RAB3B (ENSG00000169213) #33	TXNDC12 (ENSG00000117862) #34	KTI12 (ENSG00000198841)	BTF3L4 (ENSG00000134717) #35	ZFYVE9 (ENSG00000157077) #37	CC2D1B (ENSG00000154222)
Pan	ANCESTRAL SPECIES		ENSGT00940000160927.f	ENSGT00940000163504.b #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000154326.a.a.h	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.jb.a.f.a #35
Bonobo	MODERN SPECIES		CYP4B1 (ENSPPAG00000033977)	CYP4A11 (ENSPPAG00000040374) #7	CYP4X1 (ENSPPAG00000034593)	CYP4Z1 (ENSPPAG00000033041)	CYP4A22 (ENSPPAG00000030867) #7	PDZK1IP1 (ENSPPAG00000032727) #9	TAL1 (ENSPPAG00000033189) #10	STIL (ENSPPAG00000037591) #11	ENSPPAG00000027235 #12	TRABD2B (ENSPPAG00000015081) #15	SLC5A9 (ENSPPAG00000034646) #18	ENSPPAG00000009942	SPATA6 (ENSPPAG00000028728) #19	AGBL4 (ENSPPAG00000033362) #20	BEND5 (ENSPPAG00000040466) #21	ELAVL4 (ENSPPAG00000042402) #22	ENSPPAG00000023840	ENSPPAG00000035672	ENSPPAG00000033541 #24	FAF1 (ENSPPAG00000032838) #25	CDKN2C (ENSPPAG00000038172) #26	C1orf185 (ENSPPAG00000024891) #27	ENSPPAG00000032042	RNF11 (ENSPPAG00000039746) #28	TTC39A (ENSPPAG00000031439) #29	EPS15 (ENSPPAG00000033044) #30	OSBPL9 (ENSPPAG00000021541) #31	NRDC (ENSPPAG00000034186) #32	RAB3B (ENSPPAG00000044044) #33	TXNDC12 (ENSPPAG00000044043) #34	ENSPPAG00000042598
Chimpanzee	MODERN SPECIES		CYP4Z1 (ENSPTRG00000000707)	ENSPTRG00000000708 #7	PDZK1IP1 (ENSPTRG00000000709) #9	TAL1 (ENSPTRG00000051380) #10	STIL (ENSPTRG00000000711) #11	CMPK1 (ENSPTRG00000000712) #12	FOXE3 (ENSPTRG00000030618) #13	FOXD2 (ENSPTRG00000030617) #14	TRABD2B (ENSPTRG00000052213) #15	ENSPTRG00000043073 #17	SLC5A9 (ENSPTRG00000000716) #18	ENSPTRG00000048491	SPATA6 (ENSPTRG00000000718) #19	AGBL4 (ENSPTRG00000043865) #20	BEND5 (ENSPTRG00000000721) #21	ELAVL4 (ENSPTRG00000000723) #22	ENSPTRG00000051295	ENSPTRG00000051047	DMRTA2 (ENSPTRG00000000724) #24	FAF1 (ENSPTRG00000000725) #25	CDKN2C (ENSPTRG00000000726) #26	C1H1orf185 (ENSPTRG00000030611) #27	ENSPTRG00000046419	RNF11 (ENSPTRG00000041089) #28	TTC39A (ENSPTRG00000000728) #29	EPS15 (ENSPTRG00000000729) #30	OSBPL9 (ENSPTRG00000000730) #31	NRDC (ENSPTRG00000000731) #32	RAB3B (ENSPTRG00000000732) #33	TXNDC12 (ENSPTRG00000000733) #34	BTF3L4 (ENSPTRG00000000735) #35
Orangutan	MODERN SPECIES		CYP4B1 (ENSPPYG00000001387)	CYP4A22 (ENSPPYG00000001385) #7	CYP4X1 (ENSPPYG00000001384)	CYP4Z1 (ENSPPYG00000001386)	PDZK1IP1 (ENSPPYG00000001383) #9	ENSPPYG00000035408 #10	STIL (ENSPPYG00000001381) #11	CMPK1 (ENSPPYG00000001380) #12	FOXD2 (ENSPPYG00000001378) #14	TRABD2B (ENSPPYG00000001376) #15	SLC5A9 (ENSPPYG00000001373) #18	SPATA6 (ENSPPYG00000001372) #19	BEND5 (ENSPPYG00000001371) #21	ENSPPYG00000038734	AGBL4 (ENSPPYG00000001368) #20	ELAVL4 (ENSPPYG00000001367) #22	DMRTA2 (ENSPPYG00000001366) #24	FAF1 (ENSPPYG00000029417) #25	CDKN2C (ENSPPYG00000001365) #26	C1orf185 (ENSPPYG00000001364) #27	ENSPPYG00000039022	ENSPPYG00000001362	RNF11 (ENSPPYG00000040291) #28	TTC39A (ENSPPYG00000001360) #29	EPS15 (ENSPPYG00000001359) #30	OSBPL9 (ENSPPYG00000001358) #31	NRDC (ENSPPYG00000001357) #32	RAB3B (ENSPPYG00000040594) #33	TXNDC12 (ENSPPYG00000001354) #34	BTF3L4 (ENSPPYG00000001353) ##35	ENSPPYG00000033286
Gibbon	MODERN SPECIES	2	ENSNLEG00000030967	TEX38 (ENSNLEG00000016440)	EFCAB14 (ENSNLEG00000016421)	ENSNLEG00000016409 #7	PDZK1IP1 (ENSNLEG00000016402) #9	ENSNLEG00000027215 #10	STIL (ENSNLEG00000016386) #11	ENSNLEG00000016374 #12	ENSNLEG00000016372 #15	ENSNLEG00000034414 #17	SLC5A9 (ENSNLEG00000016351) #18	ENSNLEG00000036336	SPATA6 (ENSNLEG00000016340) #19	AGBL4 (ENSNLEG00000016327) #20	BEND5 (ENSNLEG00000033925) #21	ELAVL4 (ENSNLEG00000016303) #22	ENSNLEG00000032288	ENSNLEG00000027959 #24	FAF1 (ENSNLEG00000016263) #25	CDKN2C (ENSNLEG00000016259) #26	ENSNLEG00000029189	ENSNLEG00000033471	TTC39A (ENSNLEG00000016232) #29	ENSNLEG00000016192 #30	OSBPL9 (ENSNLEG00000016138) #31	NRDC (ENSNLEG00000016067) #32	RAB3B (ENSNLEG00000016065) #33	TXNDC12 (ENSNLEG00000034609) #34	BTF3L4 (ENSNLEG00000016041) #35	ENSNLEG00000016013	STX6 (ENSNLEG00000016021)
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000163504 #7	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.kb ##35	ENSGT00940000154295.y.a.a.b #36	ENSGT00940000154290.a #37	ENSGT00390000013722.ab
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000163504 #7	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.kb ##35	ENSGT00940000154290.a #37	ENSGT00390000013722.ab	ENSGT00390000009595.a
Marmoset	MODERN SPECIES	19	ENSCJAG00000062966 #7	ENSCJAG00000083949	PDZK1IP1 (ENSCJAG00000046011) #9	TAL1 (ENSCJAG00000053562) #10	STIL (ENSCJAG00000021228) #11	CMPK1 (ENSCJAG00000021250) #12	FOXE3 (ENSCJAG00000038878) #13	FOXD2 (ENSCJAG00000021263) #14	ENSCJAG00000071656	TRABD2B (ENSCJAG00000042725) #15	SLC5A9 (ENSCJAG00000021271) #18	SPATA6 (ENSCJAG00000039778) #19	ENSCJAG00000081866	BEND5 (ENSCJAG00000021284) #21	ENSCJAG00000078422	ELAVL4 (ENSCJAG00000013725) #22	FAF1 (ENSCJAG00000021555) #25	DMRTA2 (ENSCJAG00000041134) #24	CDKN2C (ENSCJAG00000060144) #26	ENSCJAG00000076266	ENSCJAG00000081094	C1orf185 (ENSCJAG00000021565) #27	ENSCJAG00000077996	RNF11 (ENSCJAG00000071727) #28	TTC39A (ENSCJAG00000021569) #29	EPS15 (ENSCJAG00000021570) #30	ENSCJAG00000071627	ENSCJAG00000038925	ENSCJAG00000071526	OSBPL9 (ENSCJAG00000021574) #31	NRDC (ENSCJAG00000021578) #32
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000163504 #7	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.kb ##35	ENSGT00940000154290.a #37	ENSGT00390000013722.ab	ENSGT00390000009595.a
Capuchin	MODERN SPECIES	214															ENSCCAG00000027782 #20	ELAVL4 (ENSCCAG00000024797) #22	DMRTA2 (ENSCCAG00000026118) #24	FAF1 (ENSCCAG00000024129) #25	ENSCCAG00000027169	CDKN2C (ENSCCAG00000020423) #26	ENSCCAG00000020651	ENSCCAG00000024446	C1orf185 (ENSCCAG00000035941) #27	RNF11 (ENSCCAG00000021392) #28	TTC39A (ENSCCAG00000029112) #29	EPS15 (ENSCCAG00000020337) #30	ENSCCAG00000022769 #31	NRDC (ENSCCAG00000035997) #32	RAB3B (ENSCCAG00000035544) #33	TXNDC12 (ENSCCAG00000021353) #34	BTF3L4 (ENSCCAG00000034219) #35
Bolivian squirrel monkey	MODERN SPECIES	45	ENSSBOG00000033087	CHD2 (ENSSBOG00000023754)	RGMA (ENSSBOG00000023291)	MCTP2 (ENSSBOG00000029271)	NR2F2 (ENSSBOG00000020466)	ENSSBOG00000035852	PDZK1IP1 (ENSSBOG00000033779) #9	STIL (ENSSBOG00000035433) #11	CMPK1 (ENSSBOG00000023132) #12	TRABD2B (ENSSBOG00000021713) #15	SLC5A9 (ENSSBOG00000031062) #18	ENSSBOG00000034864	SPATA6 (ENSSBOG00000026364) #19	BEND5 (ENSSBOG00000015358) #21	AGBL4 (ENSSBOG00000031864) #20	ELAVL4 (ENSSBOG00000022965) #22	DMRTA2 (ENSSBOG00000025121) #24	ENSSBOG00000029666	ENSSBOG00000035179	ENSSBOG00000031899	ENSSBOG00000024407	ENSSBOG00000021083	FAF1 (ENSSBOG00000035904) #25	CDKN2C (ENSSBOG00000035100) #26	C1orf185 (ENSSBOG00000034584) #27	RNF11 (ENSSBOG00000029247) #28	TTC39A (ENSSBOG00000034095) #29	EPS15 (ENSSBOG00000021478) #30	OSBPL9 (ENSSBOG00000022113) #31	ENSSBOG00000000079 #32	RAB3B (ENSSBOG00000011518) #33
Mas night monkey	MODERN SPECIES	679	CYP4A11 (ENSANAG00000019404) #7	ENSANAG00000035850	CYP4X1 (ENSANAG00000034247)	CYP4Z1 (ENSANAG00000032825)	PDZK1IP1 (ENSANAG00000037310) #9	TAL1 (ENSANAG00000018338) #10	STIL (ENSANAG00000025280) #11	CMPK1 (ENSANAG00000033187) #12	FOXE3 (ENSANAG00000019840) #13	TRABD2B (ENSANAG00000036722) #15	SLC5A9 (ENSANAG00000022766) #18	SPATA6 (ENSANAG00000033722) #19	BEND5 (ENSANAG00000018794) #21	AGBL4 (ENSANAG00000022272) #20	ENSANAG00000031055	ELAVL4 (ENSANAG00000030598) #22	DMRTA2 (ENSANAG00000033164) #24	ENSANAG00000022650	ENSANAG00000028980	ENSANAG00000028849	FAF1 (ENSANAG00000033702) #25	ENSANAG00000023034	ENSANAG00000037373	CDKN2C (ENSANAG00000033643) #26	ENSANAG00000031477	ENSANAG00000037551	C1orf185 (ENSANAG00000033385) #27	ENSANAG00000035696 #28	TTC39A (ENSANAG00000035053) #29	EPS15 (ENSANAG00000022229) #30	OSBPL9 (ENSANAG00000027048) #31
Tarsier	MODERN SPECIES	1032																ELAVL4 (ENSTSYG00000004130) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000161441	ENSGT00940000163504 #7	ENSGT00940000160927.e	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000161441	ENSGT00940000163504 #7	ENSGT00940000160927.e	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.qb.a #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Mouse lemur	MODERN SPECIES	11	CYP4A11 (ENSMICG00000000965) #7	ENSMICG00000031270	CYP4B1 (ENSMICG00000000962)	PDZK1IP1 (ENSMICG00000043731) #9	TAL1 (ENSMICG00000045732) #10	STIL (ENSMICG00000005402) #11	CMPK1 (ENSMICG00000005386) #12	FOXE3 (ENSMICG00000029422) #13	FOXD2 (ENSMICG00000034204) #14	TRABD2B (ENSMICG00000033266) #15	SLC5A9 (ENSMICG00000012426) #18	SPATA6 (ENSMICG00000003269) #19	BEND5 (ENSMICG00000003282) #21	ENSMICG00000037766	AGBL4 (ENSMICG00000003275) #20	ELAVL4 (ENSMICG00000003286) #22	DMRTA2 (ENSMICG00000044233) #24	FAF1 (ENSMICG00000003299) #25	CDKN2C (ENSMICG00000033935) #26	C1orf185 (ENSMICG00000004061) #27	ENSMICG00000005503	ENSMICG00000047946 #28	TTC39A (ENSMICG00000008377) #29	ENSMICG00000001200 #30	ENSMICG00000044074	ENSMICG00000002731 #31	ENSMICG00000029083	NRDC (ENSMICG00000002748) #32	RAB3B (ENSMICG00000036580) #33	TXNDC12 (ENSMICG00000042975) #34	ENSMICG00000002807 #35
Lemuriformes_a	ANCESTRAL SPECIES	20	ENSGT00940000161441	ENSGT00940000163504 #7	ENSGT00940000160927.e	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296.qb.a #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Greater bamboo lemur	MODERN SPECIES	669														AGBL4 (ENSPSMG00000002663) #20	BEND5 (ENSPSMG00000002676) #21	ELAVL4 (ENSPSMG00000002850) #22	DMRTA2 (ENSPSMG00000003033) #24	FAF1 (ENSPSMG00000003116) #25	CDKN2C (ENSPSMG00000003155) #26	C1orf185 (ENSPSMG00000003162) #27	RNF11 (ENSPSMG00000003177) #28	TTC39A (ENSPSMG00000003263) #29	EPS15 (ENSPSMG00000003371) #30	ENSPSMG00000003543	ENSPSMG00000003562	ENSPSMG00000003628 #31
Coquerels sifaka	MODERN SPECIES	162												SLC5A9 (ENSPCOG00000004667) #18	SPATA6 (ENSPCOG00000008715) #19	BEND5 (ENSPCOG00000023490) #21	AGBL4 (ENSPCOG00000019895) #20	ELAVL4 (ENSPCOG00000024957) #22	DMRTA2 (ENSPCOG00000028074) #24	ENSPCOG00000028658	FAF1 (ENSPCOG00000025141) #25	CDKN2C (ENSPCOG00000019258) #26	ENSPCOG00000026759	C1orf185 (ENSPCOG00000025481) #27	RNF11 (ENSPCOG00000015322) #28	TTC39A (ENSPCOG00000018198) #29	ENSPCOG00000012900 #30	OSBPL9 (ENSPCOG00000027695) #31	NRDC (ENSPCOG00000024524) #32	RAB3B (ENSPCOG00000018696) #33	TXNDC12 (ENSPCOG00000022275) #34	ENSPCOG00000026062 #35	ZFYVE9 (ENSPCOG00000028070) #37
Bushbaby	MODERN SPECIES	274											SLC5A9 (ENSOGAG00000005008) #18	SPATA6 (ENSOGAG00000005014) #19	ENSOGAG00000004600 #20	BEND5 (ENSOGAG00000005779) #21	ENSOGAG00000026942 #20	ELAVL4 (ENSOGAG00000016990) #22	DMRTA2 (ENSOGAG00000026143) #24	ENSOGAG00000033138	FAF1 (ENSOGAG00000003624) #25	CDKN2C (ENSOGAG00000003625) #26	RNF11 (ENSOGAG00000011682) #28	TTC39A (ENSOGAG00000011685) #29	EPS15 (ENSOGAG00000001077) #30	ENSOGAG00000026601	OSBPL9 (ENSOGAG00000003787) #31	ENSOGAG00000003792 #32	RAB3B (ENSOGAG00000003796) #33	TXNDC12 (ENSOGAG00000003798) #34	BTF3L4 (ENSOGAG00000030256) #35	ZFYVE9 (ENSOGAG00000015445) #37	CC2D1B (ENSOGAG00000032430)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Glires	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Rodentia	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Kangaroo rat	MODERN SPECIES	352	ENSDORG00000024423	ENSDORG00000028283	ENSDORG00000008850	ENSDORG00000027207	Cyp4x1 (ENSDORG00000015306)	Pdzk1ip1 (ENSDORG00000004566) #9	Tal1 (ENSDORG00000028266) #10	Stil (ENSDORG00000004571) #11	Cmpk1 (ENSDORG00000004576) #12	Foxd2 (ENSDORG00000028126) #14	Trabd2b (ENSDORG00000023562) #15	Slc5a9 (ENSDORG00000010547) #18	Spata6 (ENSDORG00000010310) #19	Agbl4 (ENSDORG00000012728) #20	Bend5 (ENSDORG00000005815) #21	Elavl4 (ENSDORG00000012729) #22	Dmrta2 (ENSDORG00000015486) #24	Faf1 (ENSDORG00000015487) #25	ENSDORG00000023988	Fpgt (ENSDORG00000028813)	Tnni3k (ENSDORG00000010710)	ENSDORG00000010715	Cryz (ENSDORG00000002723)	ENSDORG00000002718
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A.a.a.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000165990.b	ENSGT00940000165990.a	ENSGT00940000162562.A.a.a.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34
Mus	ANCESTRAL SPECIES	3	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00520000058517	ENSGT00940000161273 #15	ENSGT00940000165990.b	ENSGT00940000165990.a	ENSGT00940000162562.A.a.a.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00520000058517	ENSGT00940000161273 #15	ENSGT00940000165990.b.a	ENSGT00940000162562.A.a.a.b.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026305 #9	Tal1 (MGP_CAROLIEiJ_G0026304) #10	Stil (MGP_CAROLIEiJ_G0026303) #11	Cmpk1 (MGP_CAROLIEiJ_G0026302) #12	Foxe3 (MGP_CAROLIEiJ_G0026301) #13	Foxd2 (MGP_CAROLIEiJ_G0026300) #14	Trabd2b (MGP_CAROLIEiJ_G0026299) #15	Skint10 (MGP_CAROLIEiJ_G0026298)	MGP_CAROLIEiJ_G0026297 #17	Skint1 (MGP_CAROLIEiJ_G0026296) #17	MGP_CAROLIEiJ_G0026294	Slc5a9 (MGP_CAROLIEiJ_G0026293) #18	Spata6 (MGP_CAROLIEiJ_G0026292) #19	Bend5 (MGP_CAROLIEiJ_G0026291) #21	Agbl4 (MGP_CAROLIEiJ_G0026290) #20	Elavl4 (MGP_CAROLIEiJ_G0026289) #22	Dmrta2 (MGP_CAROLIEiJ_G0026288) #24	Faf1 (MGP_CAROLIEiJ_G0026287) #25	Cdkn2c (MGP_CAROLIEiJ_G0026286) #26	4930522H14Rik (MGP_CAROLIEiJ_G0026285) #27	Rnf11 (MGP_CAROLIEiJ_G0026284) #28	Ttc39a (MGP_CAROLIEiJ_G0026283) #29	Eps15 (MGP_CAROLIEiJ_G0026282) #30	MGP_CAROLIEiJ_G0026281	Osbpl9 (MGP_CAROLIEiJ_G0026280) #31	Nrd1 (MGP_CAROLIEiJ_G0026279) #32	Rab3b (MGP_CAROLIEiJ_G0026278) #33	Kti12 (MGP_CAROLIEiJ_G0026277)	MGP_CAROLIEiJ_G0026276	Txndc12 (MGP_CAROLIEiJ_G0026275) #34	MGP_CAROLIEiJ_G0026274 #35
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00520000058517	ENSGT00940000161273 #15	ENSGT00940000165990.b.a	ENSGT00940000162562.A.a.a.b.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34
Mouse	MODERN SPECIES	13	Skint11 (ENSMUSG00000057977)	Skint5 (ENSMUSG00000078598) #17	Skint6 (ENSMUSG00000087194) #17	Skint10 (ENSMUSG00000048766)	Skint2 (ENSMUSG00000034359) #17	Skint9 (ENSMUSG00000049972)	Skint3 (ENSMUSG00000070868) #17	Skint4 (ENSMUSG00000055960) #17	Skint1 (ENSMUSG00000089773) #17	Skint7 (ENSMUSG00000049214)	Skint8 (ENSMUSG00000078599)	Slc5a9 (ENSMUSG00000028544) #18	Spata6 (ENSMUSG00000034401) #19	Bend5 (ENSMUSG00000028545) #21	Agbl4 (ENSMUSG00000061298) #20	Elavl4 (ENSMUSG00000028546) #22	Dmrta2 (ENSMUSG00000047143) #24	Faf1 (ENSMUSG00000010517) #25	Cdkn2c (ENSMUSG00000028551) #26	4930522H14Rik (ENSMUSG00000060491) #27	Rnf11 (ENSMUSG00000028557) #28	Ttc39a (ENSMUSG00000028555) #29	Eps15 (ENSMUSG00000028552) #30	Calr4 (ENSMUSG00000028558)	Osbpl9 (ENSMUSG00000028559) #31	Nrd1 (ENSMUSG00000053510) #32	Rab3b (ENSMUSG00000003411) #33	Kti12 (ENSMUSG00000073775)	Txndc12 (ENSMUSG00000028567) #34	Btf3l4 (ENSMUSG00000028568) #35	Zfyve9 (ENSMUSG00000034557) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00520000058517	ENSGT00940000161273 #15	ENSGT00940000165990.b.a	ENSGT00940000162562.A.a.a.b.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.b	ENSGT00940000164707.a	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34
spretus	MODERN SPECIES	13	Cmpk1 (MGP_SPRETEiJ_G0027274) #12	Foxe3 (MGP_SPRETEiJ_G0027273) #13	Foxd2 (MGP_SPRETEiJ_G0027272) #14	MGP_SPRETEiJ_G0027271	Trabd2b (MGP_SPRETEiJ_G0027270) #15	MGP_SPRETEiJ_G0027269	Skint10 (MGP_SPRETEiJ_G0027267)	Skint2 (MGP_SPRETEiJ_G0027266) #17	Skint1 (MGP_SPRETEiJ_G0027265) #17	MGP_SPRETEiJ_G0027264	Skint7 (MGP_SPRETEiJ_G0027263)	Slc5a9 (MGP_SPRETEiJ_G0027262) #18	Spata6 (MGP_SPRETEiJ_G0027261) #19	Bend5 (MGP_SPRETEiJ_G0027260) #21	Agbl4 (MGP_SPRETEiJ_G0027259) #20	Elavl4 (MGP_SPRETEiJ_G0027258) #22	Dmrta2 (MGP_SPRETEiJ_G0027257) #24	Faf1 (MGP_SPRETEiJ_G0027256) #25	Cdkn2c (MGP_SPRETEiJ_G0027255) #26	4930522H14Rik (MGP_SPRETEiJ_G0027254) #27	Rnf11 (MGP_SPRETEiJ_G0027253) #28	Ttc39a (MGP_SPRETEiJ_G0027252) #29	Eps15 (MGP_SPRETEiJ_G0027251) #30	Calr4 (MGP_SPRETEiJ_G0027250)	Osbpl9 (MGP_SPRETEiJ_G0027249) #31	Nrd1 (MGP_SPRETEiJ_G0027248) #32	Rab3b (MGP_SPRETEiJ_G0027247) #33	Kti12 (MGP_SPRETEiJ_G0027246)	MGP_SPRETEiJ_G0027245	Txndc12 (MGP_SPRETEiJ_G0027244) #34	MGP_SPRETEiJ_G0027243 #35
Steppe mouse	MODERN SPECIES	3208																Elavl4 (ENSMSIG00000010996) #22	ENSMSIG00000010976	Dmrta2 (ENSMSIG00000010966) #24	Faf1 (ENSMSIG00000010918) #25	Cdkn2c (ENSMSIG00000010907) #26	ENSMSIG00000010900	4930522H14Rik (ENSMSIG00000010887) #27	Rnf11 (ENSMSIG00000010854) #28	Ttc39a (ENSMSIG00000010745) #29	Eps15 (ENSMSIG00000010254) #30	Calr4 (ENSMSIG00000010220)	Osbpl9 (ENSMSIG00000010057) #31	Nrd1 (ENSMSIG00000009746) #32	ENSMSIG00000009731	Rab3b (ENSMSIG00000009714) #33	ENSMSIG00000009709
Shrew mouse	MODERN SPECIES	19	Stil (MGP_PahariEiJ_G0028637) #11	Cmpk1 (MGP_PahariEiJ_G0028636) #12	Foxe3 (MGP_PahariEiJ_G0028635) #13	Foxd2 (MGP_PahariEiJ_G0028634) #14	MGP_PahariEiJ_G0028633	Trabd2b (MGP_PahariEiJ_G0028632) #15	MGP_PahariEiJ_G0028631	MGP_PahariEiJ_G0028630 #17	Skint1 (MGP_PahariEiJ_G0028629) #17	MGP_PahariEiJ_G0028628	MGP_PahariEiJ_G0028627	Slc5a9 (MGP_PahariEiJ_G0028626) #18	Spata6 (MGP_PahariEiJ_G0028625) #19	Bend5 (MGP_PahariEiJ_G0028624) #21	Agbl4 (MGP_PahariEiJ_G0028623) #20	Elavl4 (MGP_PahariEiJ_G0028622) #22	Dmrta2 (MGP_PahariEiJ_G0028621) #24	Faf1 (MGP_PahariEiJ_G0028620) #25	Cdkn2c (MGP_PahariEiJ_G0028619) #26	4930522H14Rik (MGP_PahariEiJ_G0028618) #27	Rnf11 (MGP_PahariEiJ_G0028617) #28	Ttc39a (MGP_PahariEiJ_G0028616) #29	Eps15 (MGP_PahariEiJ_G0028615) #30	Calr4 (MGP_PahariEiJ_G0028614)	Osbpl9 (MGP_PahariEiJ_G0028613) #31	Nrd1 (MGP_PahariEiJ_G0028612) #32	Rab3b (MGP_PahariEiJ_G0028611) #33	Kti12 (MGP_PahariEiJ_G0028610)	MGP_PahariEiJ_G0028609	Txndc12 (MGP_PahariEiJ_G0028608) #34	MGP_PahariEiJ_G0028607 #35
Rat	MODERN SPECIES	15	Foxe3 (ENSRNOG00000007770) #13	Foxd2 (ENSRNOG00000007759) #14	Trabd2b (ENSRNOG00000029141) #15	Skint10 (ENSRNOG00000022988)	LOC100911818 (ENSRNOG00000067091)	ENSRNOG00000068199	ENSRNOG00000063781	ENSRNOG00000067562 #17	ENSRNOG00000063827 #17	Skint4 (ENSRNOG00000042047) #17	Skint1 (ENSRNOG00000043194) #17	Skint8 (ENSRNOG00000037680)	Slc5a9 (ENSRNOG00000042950) #18	Spata6 (ENSRNOG00000007568) #19	Bend5 (ENSRNOG00000008025) #21	Elavl4 (ENSRNOG00000023601) #22	Dmrta2 (ENSRNOG00000068045) #24	Faf1 (ENSRNOG00000008523) #25	Cdkn2c (ENSRNOG00000008956) #26	LOC689589 (ENSRNOG00000009138) #27	Rnf11 (ENSRNOG00000057589) #28	Ttc39a (ENSRNOG00000047573) #29	Eps15 (ENSRNOG00000010299) #30	Calr4 (ENSRNOG00000037710)	Osbpl9 (ENSRNOG00000033593) #31	Nrdc (ENSRNOG00000007111) #32	Rab3b (ENSRNOG00000008001) #33	Kti12 (ENSRNOG00000070073)	Txndc12 (ENSRNOG00000008090) #34	Btf3l4 (ENSRNOG00000008512) #35	AABR07049554.2 (ENSRNOG00000049469)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A.a.a.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.d	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A.a.a.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.d	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00900000142372	ENSGT00940000154296 #35	ENSGT00950000183489
Golden Hamster	MODERN SPECIES	648	Stil (ENSMAUG00000018720) #11	ENSMAUG00000019205	Foxe3 (ENSMAUG00000010093) #13	Foxd2 (ENSMAUG00000010964) #14	ENSMAUG00000009858	Trabd2b (ENSMAUG00000006510) #15	ENSMAUG00000013879 #16	ENSMAUG00000004245 #17	ENSMAUG00000008748 #17	ENSMAUG00000020229	Slc5a9 (ENSMAUG00000016902) #18	ENSMAUG00000008507 #19	ENSMAUG00000021230 #19	Agbl4 (ENSMAUG00000020446) #20	Bend5 (ENSMAUG00000007838) #21	Elavl4 (ENSMAUG00000021566) #22	Dmrta2 (ENSMAUG00000012169) #24	Faf1 (ENSMAUG00000011844) #25	Cdkn2c (ENSMAUG00000019466) #26	4930522H14Rik (ENSMAUG00000018143) #27	Rnf11 (ENSMAUG00000014680) #28	Ttc39a (ENSMAUG00000013412) #29	Eps15 (ENSMAUG00000021661) #30	Calr4 (ENSMAUG00000016786)	Osbpl9 (ENSMAUG00000011321) #31	Nrd1 (ENSMAUG00000012215) #32	ENSMAUG00000010138	Rab3b (ENSMAUG00000012473) #33	Txndc12 (ENSMAUG00000008444) #34	ENSMAUG00000007753	ENSMAUG00000010455 #35
Chinese hamster chok1gshd	MODERN SPECIES	111	Tal1 (ENSCGRG00001023671) #10	Stil (ENSCGRG00001012804) #11	Cmpk1 (ENSCGRG00001016283) #12	Foxe3 (ENSCGRG00001005301) #13	Foxd2 (ENSCGRG00001010484) #14	ENSCGRG00001022727	Trabd2b (ENSCGRG00001016130) #15	ENSCGRG00001018354 #16	ENSCGRG00001021187 #17	ENSCGRG00001021660 #17	ENSCGRG00001023213	Slc5a9 (ENSCGRG00001019511) #18	Spata6 (ENSCGRG00001001168) #19	Agbl4 (ENSCGRG00001017075) #20	Bend5 (ENSCGRG00001018629) #21	Elavl4 (ENSCGRG00001020348) #22	Dmrta2 (ENSCGRG00001010624) #24	Faf1 (ENSCGRG00001012451) #25	Cdkn2c (ENSCGRG00001013915) #26	4930522H14Rik (ENSCGRG00001016306) #27	Rnf11 (ENSCGRG00001018595) #28	Ttc39a (ENSCGRG00001020495) #29	Eps15 (ENSCGRG00001009890) #30	Calr4 (ENSCGRG00001011514)	Osbpl9 (ENSCGRG00001021068) #31	Nrd1 (ENSCGRG00001022296) #32	Rab3b (ENSCGRG00001013853) #33	Txndc12 (ENSCGRG00001019312) #34	ENSCGRG00001021460 #35	ENSCGRG00001021792	Zfyve9 (ENSCGRG00001023802) #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000165990	ENSGT00940000162562.A.a.a.b #17	ENSGT00940000162562.A.a.b #17	ENSGT00940000164707.d	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00960000191437	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Prairie vole	MODERN SPECIES	1	Pdzk1ip1 (ENSMOCG00000021926) #9	Tal1 (ENSMOCG00000015608) #10	Stil (ENSMOCG00000001995) #11	Cmpk1 (ENSMOCG00000019310) #12	Foxe3 (ENSMOCG00000008738) #13	Foxd2 (ENSMOCG00000002875) #14	Trabd2b (ENSMOCG00000002510) #15	ENSMOCG00000012467	ENSMOCG00000013586 #17	ENSMOCG00000003588 #17	ENSMOCG00000019561	Slc5a9 (ENSMOCG00000022328) #18	ENSMOCG00000021709 #19	Bend5 (ENSMOCG00000003340) #21	Agbl4 (ENSMOCG00000016733) #20	Elavl4 (ENSMOCG00000010309) #22	Dmrta2 (ENSMOCG00000018451) #24	Faf1 (ENSMOCG00000016469) #25	Cdkn2c (ENSMOCG00000008425) #26	4930522H14Rik (ENSMOCG00000014783) #27	Rnf11 (ENSMOCG00000014218) #28	Ttc39a (ENSMOCG00000009418) #29	Eps15 (ENSMOCG00000004099) #30	Calr4 (ENSMOCG00000002656)	ENSMOCG00000017309	Osbpl9 (ENSMOCG00000017056) #31	Nrd1 (ENSMOCG00000008359) #32	Rab3b (ENSMOCG00000013133) #33	ENSMOCG00000008572	Txndc12 (ENSMOCG00000007402) #34	ENSMOCG00000012648 #35
Northern American deer mouse	MODERN SPECIES	11	Stil (ENSPEMG00000023881) #11	Cmpk1 (ENSPEMG00000021852) #12	Foxe3 (ENSPEMG00000025577) #13	Trabd2b (ENSPEMG00000021574) #15	ENSPEMG00000008143	ENSPEMG00000023162 #17	ENSPEMG00000026129	ENSPEMG00000030740 #17	ENSPEMG00000021558 #17	Skint1 (ENSPEMG00000011155) #17	ENSPEMG00000021177	Slc5a9 (ENSPEMG00000021770) #18	Spata6 (ENSPEMG00000022120) #19	Bend5 (ENSPEMG00000022292) #21	Agbl4 (ENSPEMG00000023297) #20	Elavl4 (ENSPEMG00000021058) #22	Dmrta2 (ENSPEMG00000028558) #24	Faf1 (ENSPEMG00000022043) #25	Cdkn2c (ENSPEMG00000029349) #26	ENSPEMG00000030255	4930522H14Rik (ENSPEMG00000020496) #27	Rnf11 (ENSPEMG00000028550) #28	Ttc39a (ENSPEMG00000021737) #29	ENSPEMG00000029734	Eps15 (ENSPEMG00000017501) #30	Calr4 (ENSPEMG00000015759)	Osbpl9 (ENSPEMG00000023026) #31	Nrd1 (ENSPEMG00000021266) #32	Rab3b (ENSPEMG00000009732) #33	ENSPEMG00000029069	Txndc12 (ENSPEMG00000027936) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	780												ENSNGAG00000006899 #19	ENSNGAG00000011566 #20	Bend5 (ENSNGAG00000016052) #21	ENSNGAG00000020205 #20	Elavl4 (ENSNGAG00000023123) #22	Dmrta2 (ENSNGAG00000010314) #24	Faf1 (ENSNGAG00000015466) #25	ENSNGAG00000023426	Cdkn2c (ENSNGAG00000001881) #26
Lesser Egyptian jerboa	MODERN SPECIES	98								Cyp4x1 (ENSJJAG00000009131)	Pdzk1ip1 (ENSJJAG00000013927) #9	ENSJJAG00000013211	Foxd2 (ENSJJAG00000014328) #14	Spata6 (ENSJJAG00000010848) #19	ENSJJAG00000009281 #20	Bend5 (ENSJJAG00000007543) #21	ENSJJAG00000004932 #20	Elavl4 (ENSJJAG00000023099) #22	ENSJJAG00000014086	Dmrta2 (ENSJJAG00000021824) #24	Faf1 (ENSJJAG00000021352) #25	Cdkn2c (ENSJJAG00000020524) #26	Alg10b (ENSJJAG00000019582)	Syt10 (ENSJJAG00000019374)	Pkp2 (ENSJJAG00000014586)	Yars2 (ENSJJAG00000000641)	Dnm1l (ENSJJAG00000023169)	ENSJJAG00000013851	Fgd4 (ENSJJAG00000018423)	Gng12 (ENSJJAG00000017730)	Gadd45a (ENSJJAG00000016764)	ENSJJAG00000016243	ENSJJAG00000016153
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.nb #31	ENSGT00940000154690.mb.b #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000163570.a	ENSGT00940000155173.f.a	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.nb #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000001377	STIL (ENSHGLG00000001713) #11	ENSHGLG00000001416	FOXE3 (ENSHGLG00000034395) #13	ENSHGLG00000049793	ENSHGLG00000020805	ENSHGLG00000010693 #15	ENSHGLG00000037697	SLC5A9 (ENSHGLG00000003161) #18	ENSHGLG00000002670	SPATA6 (ENSHGLG00000014205) #19	ENSHGLG00000011360 #21	ENSHGLG00000034647 #21	ENSHGLG00000039566	ENSHGLG00000043536	ELAVL4 (ENSHGLG00000000485) #22	ENSHGLG00000037718	DMRTA2 (ENSHGLG00000001509) #24	CDKN2C (ENSHGLG00000034852) #26	FAF1 (ENSHGLG00000000538) #25	ENSHGLG00000034536	ENSHGLG00000001310 #29	ENSHGLG00000000349 #30	ENSHGLG00000003489	ENSHGLG00000002972	ENSHGLG00000001285 #31	ENSHGLG00000032380	ENSHGLG00000002902 #32	ENSHGLG00000044000	ENSHGLG00000031974 #33	ENSHGLG00000000345
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000163570.a	ENSGT00940000155173.f.a	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.nb #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Hystricomorpha_b	ANCESTRAL SPECIES	54	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000163570.a	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589.k #12	ENSGT00940000163540	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.nb #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Degu	MODERN SPECIES	148	PDZK1IP1 (ENSODEG00000008906) #9	TAL1 (ENSODEG00000006602) #10	STIL (ENSODEG00000007478) #11	ENSODEG00000007423 #12	ENSODEG00000006760	ENSODEG00000019646	ENSODEG00000008585	TRABD2B (ENSODEG00000007567) #15	SLC5A9 (ENSODEG00000007740) #18	SPATA6 (ENSODEG00000006382) #19	BEND5 (ENSODEG00000007742) #21	ENSODEG00000006988	ENSODEG00000019354	AGBL4 (ENSODEG00000009564) #20	ENSODEG00000007109	ELAVL4 (ENSODEG00000006770) #22	DMRTA2 (ENSODEG00000006537) #24	FAF1 (ENSODEG00000010743) #25	CDKN2C (ENSODEG00000010220) #26	ENSODEG00000007244	ENSODEG00000006863	ENSODEG00000009865	ENSODEG00000009489 #28	TTC39A (ENSODEG00000006441) #29	EPS15 (ENSODEG00000006324) #30	ENSODEG00000007342	OSBPL9 (ENSODEG00000005945) #31	NRDC (ENSODEG00000007264) #32	RAB3B (ENSODEG00000008282) #33	ENSODEG00000006614	ENSODEG00000006041 #34
Long-tailed chinchilla	MODERN SPECIES	171	TEX38 (ENSCLAG00000006425)	EFCAB14 (ENSCLAG00000005792)	ENSCLAG00000005609	ENSCLAG00000005036	ENSCLAG00000004484	CYP4B1 (ENSCLAG00000007349)	PDZK1IP1 (ENSCLAG00000007015) #9	TAL1 (ENSCLAG00000006842) #10	STIL (ENSCLAG00000006217) #11	ENSCLAG00000005985	TRABD2B (ENSCLAG00000005900) #15	SLC5A9 (ENSCLAG00000007839) #18	SPATA6 (ENSCLAG00000007504) #19	BEND5 (ENSCLAG00000007168) #21	AGBL4 (ENSCLAG00000006735) #20	ELAVL4 (ENSCLAG00000005476) #22	DMRTA2 (ENSCLAG00000008314) #24	FAF1 (ENSCLAG00000008153) #25	CDKN2C (ENSCLAG00000007763) #26	C1orf185 (ENSCLAG00000007634) #27	ENSCLAG00000006939	TTC39A (ENSCLAG00000005328) #29	EPS15 (ENSCLAG00000005042) #30	ENSCLAG00000004460	ENSCLAG00000009812	OSBPL9 (ENSCLAG00000006250) #31	NRDC (ENSCLAG00000004925) #32	RAB3B (ENSCLAG00000004516) #33	ENSCLAG00000004470	TXNDC12 (ENSCLAG00000004403) #34	BTF3L4 (ENSCLAG00000007659) #35
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	112													ENSCPOG00000013870 #19	AGBL4 (ENSCPOG00000013872) #20	BEND5 (ENSCPOG00000013879) #21	ENSCPOG00000002044 #22	ENSCPOG00000030212	FAF1 (ENSCPOG00000001151) #25	CDKN2C (ENSCPOG00000031293) #26	RNF11 (ENSCPOG00000031987) #28	TTC39A (ENSCPOG00000008138) #29	EPS15 (ENSCPOG00000009273) #30	ENSCPOG00000023884	OSBPL9 (ENSCPOG00000010663) #31	NRDC (ENSCPOG00000010677) #32	RAB3B (ENSCPOG00000007714) #33	TXNDC12 (ENSCPOG00000038607) #34	ENSCPOG00000031935	BTF3L4 (ENSCPOG00000036248) #35	ENSCPOG00000033698	ZFYVE9 (ENSCPOG00000005063) #37
Guinea pig	MODERN SPECIES	64	CHCHD7 (ENSCPOG00000030280)	PLAG1 (ENSCPOG00000039131)	MOS (ENSCPOG00000020476)	ENSCPOG00000011697	ENSCPOG00000030320	LYN (ENSCPOG00000011693)	TGS1 (ENSCPOG00000009713)	TMEM68 (ENSCPOG00000019826)	XKR4 (ENSCPOG00000003676)	ENSCPOG00000039324	SOX17 (ENSCPOG00000000892)	MRPL15 (ENSCPOG00000035946)	LYPLA1 (ENSCPOG00000022715)	TCEA1 (ENSCPOG00000005886)	ENSCPOG00000038533	ENSCPOG00000022816 #22	ATP6V1H (ENSCPOG00000012174)	ENSCPOG00000023180	OPRK1 (ENSCPOG00000006607)	NPBWR1 (ENSCPOG00000019602)	RB1CC1 (ENSCPOG00000020341)	ENSCPOG00000034718	ENSCPOG00000032897	ST18 (ENSCPOG00000005486)	PCMTD1 (ENSCPOG00000038704)	SNTG1 (ENSCPOG00000010462)	ENSCPOG00000033449	CLXN (ENSCPOG00000003325)	UBE2V2 (ENSCPOG00000039321)	MCM4 (ENSCPOG00000003682)	PRKDC (ENSCPOG00000013944)
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A.c #17	ENSGT00940000162562.A.d #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988.f #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.mb.b #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Marmotini	ANCESTRAL SPECIES		ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A.c #17	ENSGT00940000164707.e.b	ENSGT00940000162562.A.d #17	ENSGT00940000164707.e.a	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988.f #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.mb.b #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Alpin marmot	MODERN SPECIES	15	PDZK1IP1 (ENSMMMG00000018092) #9	ENSMMMG00000018085 #10	STIL (ENSMMMG00000018013) #11	CMPK1 (ENSMMMG00000017986) #12	FOXD2 (ENSMMMG00000017982) #14	TRABD2B (ENSMMMG00000017951) #15	ENSMMMG00000017939 #16	ENSMMMG00000017918 #17	ENSMMMG00000017906	ENSMMMG00000017897 #17	ENSMMMG00000017885	SLC5A9 (ENSMMMG00000017850) #18	ENSMMMG00000017834 #19	BEND5 (ENSMMMG00000017823) #21	AGBL4 (ENSMMMG00000017802) #20	ELAVL4 (ENSMMMG00000017637) #22	ENSMMMG00000017613	FAF1 (ENSMMMG00000017599) #25	CDKN2C (ENSMMMG00000017571) #26	ENSMMMG00000017564	C1orf185 (ENSMMMG00000017543) #27	RNF11 (ENSMMMG00000017539) #28	TTC39A (ENSMMMG00000017526) #29	EPS15 (ENSMMMG00000017432) #30	ENSMMMG00000017404	ENSMMMG00000017393	ENSMMMG00000016694 #31	NRDC (ENSMMMG00000016570) #32	RAB3B (ENSMMMG00000016565) #33	TXNDC12 (ENSMMMG00000016554) #34	BTF3L4 (ENSMMMG00000016539) #35
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A.c #17	ENSGT00940000162562.A.d #17	ENSGT00940000164707.e.a	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988.f #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.m #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690.mb.b #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Arctic ground squirrel	MODERN SPECIES	21											ENSUPAG00010022468 #19	BEND5 (ENSUPAG00010022467) #21	ENSUPAG00010022466	ENSUPAG00010022464	AGBL4 (ENSUPAG00010022463) #20	ELAVL4 (ENSUPAG00010022399) #22	DMRTA2 (ENSUPAG00010022391) #24	FAF1 (ENSUPAG00010022385) #25	CDKN2C (ENSUPAG00010022383) #26	C1orf185 (ENSUPAG00010022379) #27	RNF11 (ENSUPAG00010022375) #28	TTC39A (ENSUPAG00010022367) #29	EPS15 (ENSUPAG00010022360) #30	ENSUPAG00010022352	ENSUPAG00010021819 #31	NRDC (ENSUPAG00010021802) #32	RAB3B (ENSUPAG00010021800) #33	TXNDC12 (ENSUPAG00010021798) #34	BTF3L4 (ENSUPAG00010021796) #35	ENSUPAG00010021795	ZFYVE9 (ENSUPAG00010021759) #37
Squirrel	MODERN SPECIES	122																ELAVL4 (ENSSTOG00000027271) #22	DMRTA2 (ENSSTOG00000024624) #24	FAF1 (ENSSTOG00000002849) #25	CDKN2C (ENSSTOG00000013796) #26	C1orf185 (ENSSTOG00000028403) #27	ENSSTOG00000020072 #28	TTC39A (ENSSTOG00000009015) #29	ENSSTOG00000023598 #30	ENSSTOG00000022882	ENSSTOG00000000692 #31	NRDC (ENSSTOG00000000706) #32	RAB3B (ENSSTOG00000016470) #33	ENSSTOG00000032439	TXNDC12 (ENSSTOG00000006093) #34	BTF3L4 (ENSSTOG00000006129) #35	ENSSTOG00000025134
Eurasian red squirrel	MODERN SPECIES		CYP4X1 (ENSSVLG00005010957)	PDZK1IP1 (ENSSVLG00005011099) #9	TAL1 (ENSSVLG00005011145) #10	STIL (ENSSVLG00005011246) #11	ENSSVLG00005012034 #12	FOXE3 (ENSSVLG00005012158) #13	FOXD2 (ENSSVLG00005012190) #14	TRABD2B (ENSSVLG00005012216) #15	ENSSVLG00005012317 #16	ENSSVLG00005012369 #17	ENSSVLG00005012469	SLC5A9 (ENSSVLG00005012665) #18	SPATA6 (ENSSVLG00005013178) #19	AGBL4 (ENSSVLG00005013331) #20	BEND5 (ENSSVLG00005013425) #21	ELAVL4 (ENSSVLG00005014154) #22	DMRTA2 (ENSSVLG00005014792) #24	FAF1 (ENSSVLG00005014843) #25	CDKN2C (ENSSVLG00005014944) #26	C1orf185 (ENSSVLG00005015015) #27	ENSSVLG00005015219	ENSSVLG00005015243 #28	TTC39A (ENSSVLG00005015332) #29	EPS15 (ENSSVLG00005015885) #30	ENSSVLG00005016035	ENSSVLG00005016060	OSBPL9 (ENSSVLG00005016219) #31	ENSSVLG00005016989	NRDC (ENSSVLG00005017058) #32	RAB3B (ENSSVLG00005017555) #33	TXNDC12 (ENSSVLG00005017615) #34
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000160927	ENSGT00980000201734	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Rabbit	MODERN SPECIES	4	TRABD2B (ENSOCUG00000035774) #15	ENSOCUG00000031714	SLC5A9 (ENSOCUG00000007119) #18	ENSOCUG00000021113	SPATA6 (ENSOCUG00000008704) #19	ENSOCUG00000006460 #20	BEND5 (ENSOCUG00000006471) #21	ENSOCUG00000033406 ##20	ENSOCUG00000011146	ENSOCUG00000023561	ENSOCUG00000035051	ENSOCUG00000031084	ENSOCUG00000029778	ENSOCUG00000030354	ENSOCUG00000037999	ELAVL4 (ENSOCUG00000016262) #22	DMRTA2 (ENSOCUG00000001019) #24	FAF1 (ENSOCUG00000031945) #25	CDKN2C (ENSOCUG00000008385) #26	ENSOCUG00000038347	C1orf185 (ENSOCUG00000027363) #27	RNF11 (ENSOCUG00000007582) #28	TTC39A (ENSOCUG00000007583) #29	EPS15 (ENSOCUG00000004293) #30	ENSOCUG00000023504	OSBPL9 (ENSOCUG00000004303) #31	NRDC (ENSOCUG00000004330) #32	RAB3B (ENSOCUG00000001969) #33	ENSOCUG00000033633	TXNDC12 (ENSOCUG00000001972) #34	ENSOCUG00000001517 #35
Pika	MODERN SPECIES	2665																ELAVL4 (ENSOPRG00000015300) #22
Tree shrew	MODERN SPECIES	1418														SPATA6 (ENSTBEG00000011254) #19	AGBL4 (ENSTBEG00000011525) #20	ELAVL4 (ENSTBEG00000011730) #22
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157399 #22
Common shrew	MODERN SPECIES	11422																ELAVL4 (ENSSARG00000010733) #22
Hedgehog	MODERN SPECIES	15759																ELAVL4 (ENSEEUG00000008766) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Suina	ANCESTRAL SPECIES	27	ENSGT00940000155173.g.b	ENSGT00940000154660.b.d.b #9	ENSGT00940000155173.g.a	ENSGT00940000160927	ENSGT00940000154660.b.c #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Pig	MODERN SPECIES	14	ENSSSCG00000031778	ENSSSCG00000056639	ENSSSCG00000020872 #9	TAL1 (ENSSSCG00000058056) #10	STIL (ENSSSCG00000003888) #11	CMPK1 (ENSSSCG00000003885) #12	FOXE3 (ENSSSCG00000003884) #13	FOXD2 (ENSSSCG00000034880) #14	TRABD2B (ENSSSCG00000037318) #15	SLC5A9 (ENSSSCG00000003882) #18	SPATA6 (ENSSSCG00000003881) #19	ENSSSCG00000031300 #20	BEND5 (ENSSSCG00000063412) #21	ENSSSCG00000049367	ENSSSCG00000052381	ELAVL4 (ENSSSCG00000037291) #22	DMRTA2 (ENSSSCG00000030552) #24	ENSSSCG00000049732	FAF1 (ENSSSCG00000003877) #25	CDKN2C (ENSSSCG00000003876) #26	C1orf185 (ENSSSCG00000031188) #27	RNF11 (ENSSSCG00000031172) #28	TTC39A (ENSSSCG00000003875) #29	ENSSSCG00000055459	EPS15 (ENSSSCG00000003872) #30	ENSSSCG00000059473	OSBPL9 (ENSSSCG00000021292) #31	ENSSSCG00000058239	NRDC (ENSSSCG00000003870) #32	RAB3B (ENSSSCG00000021036) #33	KTI12 (ENSSSCG00000046753)
Chacoan peccary	MODERN SPECIES	54	ENSCWAG00000007884	ENSCWAG00000007782	ENSCWAG00000007685	ENSCWAG00000007625	ENSCWAG00000007601 #9	TAL1 (ENSCWAG00000007586) #10	STIL (ENSCWAG00000007144) #11	CMPK1 (ENSCWAG00000007073) #12	FOXE3 (ENSCWAG00000007053) #13	FOXD2 (ENSCWAG00000007046) #14	TRABD2B (ENSCWAG00000007013) #15	SLC5A9 (ENSCWAG00000006856) #18	SPATA6 (ENSCWAG00000006748) #19	BEND5 (ENSCWAG00000006694) #21	AGBL4 (ENSCWAG00000006528) #20	ELAVL4 (ENSCWAG00000005560) #22	DMRTA2 (ENSCWAG00000005466) #24	FAF1 (ENSCWAG00000005411) #25	CDKN2C (ENSCWAG00000005386) #26	C1orf185 (ENSCWAG00000005324) #27	RNF11 (ENSCWAG00000005303) #28	TTC39A (ENSCWAG00000004869) #29	EPS15 (ENSCWAG00000004768) #30	ENSCWAG00000004705	OSBPL9 (ENSCWAG00000004180) #31	NRDC (ENSCWAG00000003843) #32	RAB3B (ENSCWAG00000003795) #33	ENSCWAG00000003778	TXNDC12 (ENSCWAG00000003757) #34	BTF3L4 (ENSCWAG00000003727) #35	ZFYVE9 (ENSCWAG00000003673) #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000153288.b	ENSGT00390000002443
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Cetacea	ANCESTRAL SPECIES		ENSGT00950000182958.a.b.b.j.l	ENSGT00940000155173.i.a	ENSGT00940000160927	ENSGT00940000155173.j	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000166653
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000155173.j	ENSGT00940000160927	ENSGT00940000155173.i.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000155339.r	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000166653
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000160927	ENSGT00940000155173.i.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000153412.A.a.c.e.b	ENSGT00940000161273 #15	ENSGT00940000155339.r	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000158435.j
Dolphin	MODERN SPECIES	2874											ENSTTRG00000012352 #17	SLC5A9 (ENSTTRG00000012358) #18	SPATA6 (ENSTTRG00000012366) #19	AGBL4 (ENSTTRG00000012384) #20	BEND5 (ENSTTRG00000012397) #21	ELAVL4 (ENSTTRG00000012441) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000161441.c.b.a	ENSGT00940000163504 #7	ENSGT00940000155173.i.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000155339.r	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000158435.j
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000161441.c.b.a	ENSGT00940000163504 #7	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000153412.A.a.c.e.b	ENSGT00940000161273 #15	ENSGT00940000155339.r	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Narwhal	MODERN SPECIES	304	ENSMMNG00015017646 #7	PDZK1IP1 (ENSMMNG00015017600) #9	TAL1 (ENSMMNG00015017573) #10	STIL (ENSMMNG00015017497) #11	CMPK1 (ENSMMNG00015017341) #12	FOXE3 (ENSMMNG00015017301) #13	FOXD2 (ENSMMNG00015017290) #14	ENSMMNG00015017274	TRABD2B (ENSMMNG00015017248) #15	ENSMMNG00015017223	SLC5A9 (ENSMMNG00015017189) #18	SPATA6 (ENSMMNG00015017114) #19	BEND5 (ENSMMNG00015017067) #21	ENSMMNG00015017042	AGBL4 (ENSMMNG00015016854) #20	ELAVL4 (ENSMMNG00015016468) #22	DMRTA2 (ENSMMNG00015016305) #24	FAF1 (ENSMMNG00015016261) #25	CDKN2C (ENSMMNG00015016226) #26	ENSMMNG00015016200	RNF11 (ENSMMNG00015016177) #28	TTC39A (ENSMMNG00015015942) #29	EPS15 (ENSMMNG00015015790) #30	ENSMMNG00015015722	OSBPL9 (ENSMMNG00015015491) #31	NRDC (ENSMMNG00015015338) #32	ENSMMNG00015015285	RAB3B (ENSMMNG00015015267) #33	ENSMMNG00015015254	TXNDC12 (ENSMMNG00015015235) #34	BTF3L4 (ENSMMNG00015015217) #35
Beluga whale	MODERN SPECIES	74	TAL1 (ENSDLEG00000014787) #10	STIL (ENSDLEG00000014810) #11	CMPK1 (ENSDLEG00000014989) #12	FOXE3 (ENSDLEG00000015041) #13	FOXD2 (ENSDLEG00000015047) #14	ENSDLEG00000015052	TRABD2B (ENSDLEG00000015057) #15	ENSDLEG00000015069	ENSDLEG00000015073	SLC5A9 (ENSDLEG00000015091) #18	SPATA6 (ENSDLEG00000015119) #19	AGBL4 (ENSDLEG00000015168) #20	BEND5 (ENSDLEG00000015199) #21	ENSDLEG00000015227	ENSDLEG00000015238 #20	ELAVL4 (ENSDLEG00000015258) #22	DMRTA2 (ENSDLEG00000016008) #24	FAF1 (ENSDLEG00000016028) #25	CDKN2C (ENSDLEG00000016125) #26	C1orf185 (ENSDLEG00000016132) #27	RNF11 (ENSDLEG00000016174) #28	TTC39A (ENSDLEG00000016187) #29	EPS15 (ENSDLEG00000016250) #30	ENSDLEG00000016334	OSBPL9 (ENSDLEG00000016465) #31	NRDC (ENSDLEG00000017921) #32	ENSDLEG00000018017	RAB3B (ENSDLEG00000018039) #33	TXNDC12 (ENSDLEG00000018054) #34	ENSDLEG00000018063	BTF3L4 (ENSDLEG00000018068) #35
Vaquita	MODERN SPECIES		ENSPSNG00000008499	PDZK1IP1 (ENSPSNG00000008584) #9	TAL1 (ENSPSNG00000008617) #10	STIL (ENSPSNG00000008673) #11	CMPK1 (ENSPSNG00000008760) #12	FOXE3 (ENSPSNG00000008840) #13	FOXD2 (ENSPSNG00000008853) #14	TRABD2B (ENSPSNG00000008890) #15	ENSPSNG00000008955	ENSPSNG00000008987	SLC5A9 (ENSPSNG00000009041) #18	SPATA6 (ENSPSNG00000009229) #19	AGBL4 (ENSPSNG00000009355) #20	BEND5 (ENSPSNG00000009518) #21	ENSPSNG00000009540	ELAVL4 (ENSPSNG00000009710) #22	DMRTA2 (ENSPSNG00000010437) #24	FAF1 (ENSPSNG00000010473) #25	CDKN2C (ENSPSNG00000010560) #26	ENSPSNG00000010600	C1orf185 (ENSPSNG00000010619) #27	RNF11 (ENSPSNG00000010799) #28	TTC39A (ENSPSNG00000010892) #29	EPS15 (ENSPSNG00000011562) #30	ENSPSNG00000011761 #31	NRDC (ENSPSNG00000012358) #32	ENSPSNG00000012757	RAB3B (ENSPSNG00000012890) #33	TXNDC12 (ENSPSNG00000012967) #34	ENSPSNG00000013037	BTF3L4 (ENSPSNG00000013083) #35
Sperm whale	MODERN SPECIES	15	ENSPCTG00005009447	BTF3L4 (ENSPCTG00005009786) #35	TXNDC12 (ENSPCTG00005009903) #34	ENSPCTG00005010014	RAB3B (ENSPCTG00005010036) #33	NRDC (ENSPCTG00005010107) #32	OSBPL9 (ENSPCTG00005010621) #31	ENSPCTG00005011404	EPS15 (ENSPCTG00005011544) #30	TTC39A (ENSPCTG00005011838) #29	RNF11 (ENSPCTG00005012191) #28	ENSPCTG00005012230	CDKN2C (ENSPCTG00005012278) #26	FAF1 (ENSPCTG00005012310) #25	ENSPCTG00005012390 #20	ELAVL4 (ENSPCTG00005012489) #22	ENSPCTG00005013384	ENSPCTG00005013401	BEND5 (ENSPCTG00005013421) #21	AGBL4 (ENSPCTG00005013528) #20	SPATA6 (ENSPCTG00005013649) #19	SLC5A9 (ENSPCTG00005013780) #18	ENSPCTG00005014378	ENSPCTG00005014432	FOXE3 (ENSPCTG00005014461) #13	CMPK1 (ENSPCTG00005014484) #12	STIL (ENSPCTG00005014632) #11	TAL1 (ENSPCTG00005014754) #10	PDZK1IP1 (ENSPCTG00005014810) #9	ENSPCTG00005014892	ENSPCTG00005015607
Blue whale	MODERN SPECIES		ENSBMSG00010005002	ENSBMSG00010005028	ENSBMSG00010005054	PDZK1IP1 (ENSBMSG00010005121) #9	TAL1 (ENSBMSG00010005132) #10	STIL (ENSBMSG00010005150) #11	CMPK1 (ENSBMSG00010005177) #12	FOXE3 (ENSBMSG00010005194) #13	ENSBMSG00010005215	TRABD2B (ENSBMSG00010005224) #15	SLC5A9 (ENSBMSG00010005258) #18	SPATA6 (ENSBMSG00010005335) #19	AGBL4 (ENSBMSG00010005358) #20	BEND5 (ENSBMSG00010005413) #21	ENSBMSG00010005423	ELAVL4 (ENSBMSG00010005482) #22	DMRTA2 (ENSBMSG00010005622) #24	FAF1 (ENSBMSG00010005636) #25	CDKN2C (ENSBMSG00010005658) #26	C1orf185 (ENSBMSG00010005668) #27	RNF11 (ENSBMSG00010005680) #28	TTC39A (ENSBMSG00010005702) #29	EPS15 (ENSBMSG00010005767) #30	ENSBMSG00010005842 #31	NRDC (ENSBMSG00010005952) #32	RAB3B (ENSBMSG00010005996) #33	TXNDC12 (ENSBMSG00010006006) #34	ENSBMSG00010006017	ENSBMSG00010006025	ENSBMSG00010006038	ZFYVE9 (ENSBMSG00010006063) #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000155173.k.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000155173.k.a.a.b.a.d	ENSGT00940000155173.k.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Goat	MODERN SPECIES	22	CYP4A42 (ENSCHIG00000025289)	CYP4X1 (ENSCHIG00000017002)	PDZK1IP1 (ENSCHIG00000010100) #9	TAL1 (ENSCHIG00000023704) #10	STIL (ENSCHIG00000018306) #11	CMPK1 (ENSCHIG00000009857) #12	FOXE3 (ENSCHIG00000005171) #13	FOXD2 (ENSCHIG00000000964) #14	ENSCHIG00000008212	TRABD2B (ENSCHIG00000016346) #15	ENSCHIG00000016345 #17	SLC5A9 (ENSCHIG00000008499) #18	SPATA6 (ENSCHIG00000022098) #19	ENSCHIG00000002488 #20	BEND5 (ENSCHIG00000021731) #21	ELAVL4 (ENSCHIG00000002038) #22	DMRTA2 (ENSCHIG00000014219) #24	FAF1 (ENSCHIG00000023469) #25	CDKN2C (ENSCHIG00000018497) #26	C1orf185 (ENSCHIG00000024707) #27	RNF11 (ENSCHIG00000015466) #28	TTC39A (ENSCHIG00000004432) #29	EPS15 (ENSCHIG00000014467) #30	ENSCHIG00000011084	ENSCHIG00000026722 #31	NRDC (ENSCHIG00000018703) #32	ENSCHIG00000015938	RAB3B (ENSCHIG00000018985) #33	TXNDC12 (ENSCHIG00000021386) #34	ENSCHIG00000000766 #35	ZFYVE9 (ENSCHIG00000027153) #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000153095.g.b.b.d.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831.q.a #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00960000192687	ENSGT00940000154690.q #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
American bison	MODERN SPECIES	2971	CYP4X1 (ENSBBBG00000008137)	ENSBBBG00000009802	PDZK1IP1 (ENSBBBG00000009801) #9	ENSBBBG00000001633 #10	STIL (ENSBBBG00000001632) #11	CMPK1 (ENSBBBG00000009782) #12	TRABD2B (ENSBBBG00000009775) #15	ENSBBBG00000009768 #16	ENSBBBG00000009765	ENSBBBG00000009039 #17	SLC5A9 (ENSBBBG00000009762) #18	SPATA6 (ENSBBBG00000009751) #19	AGBL4 (ENSBBBG00000009737) #20	BEND5 (ENSBBBG00000009734) #21	ENSBBBG00000001599	ELAVL4 (ENSBBBG00000009727) #22	FAF1 (ENSBBBG00000009713) #25	CDKN2C (ENSBBBG00000009704) #26
Bos	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000153095.g.b.b.d.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000154831.q.a #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00960000192687	ENSGT00940000154690.q #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00990000203553.c.a.a.a.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000154831.q.a #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00960000192687	ENSGT00940000154690.q #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Wild yak	MODERN SPECIES	676										ENSBMUG00000015327 #19	ENSBMUG00000015342 #19	AGBL4 (ENSBMUG00000015405) #20	BEND5 (ENSBMUG00000015425) #21	ENSBMUG00000015436	ENSBMUG00000015445	ELAVL4 (ENSBMUG00000015604) #22	DMRTA2 (ENSBMUG00000015624) #24	FAF1 (ENSBMUG00000015674) #25	CDKN2C (ENSBMUG00000015705) #26	C1orf185 (ENSBMUG00000015719) #27	RNF11 (ENSBMUG00000015733) #28	TTC39A (ENSBMUG00000015807) #29	EPS15 (ENSBMUG00000016038) #30	ENSBMUG00000016376 #31	ENSBMUG00000016543	NRDC (ENSBMUG00000016703) #32	RAB3B (ENSBMUG00000016730) #33	TXNDC12 (ENSBMUG00000016772) #34	ENSBMUG00000016784	ENSBMUG00000016800	ZFYVE9 (ENSBMUG00000016829) #37
Domestic yak	MODERN SPECIES	22	ENSBGRG00000000946	CYP4X1 (ENSBGRG00000000906)	PDZK1IP1 (ENSBGRG00000000884) #9	TAL1 (ENSBGRG00000000873) #10	STIL (ENSBGRG00000000847) #11	CMPK1 (ENSBGRG00000000768) #12	FOXD2 (ENSBGRG00000000734) #14	TRABD2B (ENSBGRG00000000715) #15	ENSBGRG00000000659 #17	ENSBGRG00000000634	SLC5A9 (ENSBGRG00000000471) #18	ENSBGRG00000000443	SPATA6 (ENSBGRG00000000361) #19	ENSBGRG00000000329	BEND5 (ENSBGRG00000000244) #21	ELAVL4 (ENSBGRG00000008303) #22	ENSBGRG00000008263	DMRTA2 (ENSBGRG00000008234) #24	ENSBGRG00000008184	FAF1 (ENSBGRG00000007790) #25	CDKN2C (ENSBGRG00000007727) #26	ENSBGRG00000007699	ENSBGRG00000007678	C1orf185 (ENSBGRG00000007509) #27	ENSBGRG00000007489	RNF11 (ENSBGRG00000007453) #28	TTC39A (ENSBGRG00000006890) #29	EPS15 (ENSBGRG00000006427) #30	ENSBGRG00000004997 #31	NRDC (ENSBGRG00000004115) #32	RAB3B (ENSBGRG00000004067) #33
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000153095.g.b.b.d.b	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000154831.q.a #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690.q #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.a.b.b.a	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005012345	CYP4X1 (ENSBIXG00005012436)	PDZK1IP1 (ENSBIXG00005012472) #9	TAL1 (ENSBIXG00005001347) #10	STIL (ENSBIXG00005001365) #11	CMPK1 (ENSBIXG00005012554) #12	FOXE3 (ENSBIXG00005012567) #13	TRABD2B (ENSBIXG00005012610) #15	ENSBIXG00005012658 #17	SLC5A9 (ENSBIXG00005012722) #18	ENSBIXG00005012739	SPATA6 (ENSBIXG00005012777) #19	BEND5 (ENSBIXG00005012833) #21	ENSBIXG00005001430	AGBL4 (ENSBIXG00005012945) #20	ELAVL4 (ENSBIXG00005013087) #22	ENSBIXG00005013121	DMRTA2 (ENSBIXG00005013129) #24	ENSBIXG00005013142	ENSBIXG00005013185 #25	CDKN2C (ENSBIXG00005013218) #26	C1orf185 (ENSBIXG00005013246) #27	RNF11 (ENSBIXG00005013258) #28	TTC39A (ENSBIXG00005013555) #29	EPS15 (ENSBIXG00005013837) #30	OSBPL9 (ENSBIXG00005014176) #31	ENSBIXG00005014220	NRDC (ENSBIXG00005014778) #32	RAB3B (ENSBIXG00005014889) #33	ENSBIXG00005014899	TXNDC12 (ENSBIXG00005002157) #34
Cow	MODERN SPECIES	22	PDZK1IP1 (ENSBTAG00000002555) #9	TAL1 (ENSBTAG00000005029) #10	STIL (ENSBTAG00000017844) #11	CMPK1 (ENSBTAG00000019956) #12	FOXE3 (ENSBTAG00000051575) #13	FOXD2 (ENSBTAG00000045643) #14	TRABD2B (ENSBTAG00000054324) #15	SKINT1 (ENSBTAG00000009192) #17	ENSBTAG00000054583	SLC5A9 (ENSBTAG00000014225) #18	SPATA6 (ENSBTAG00000003128) #19	ENSBTAG00000012722 #20	BEND5 (ENSBTAG00000009209) #21	ENSBTAG00000053607	ENSBTAG00000054981 #20	ELAVL4 (ENSBTAG00000021046) #22	DMRTA2 (ENSBTAG00000010414) #24	FAF1 (ENSBTAG00000014482) #25	CDKN2C (ENSBTAG00000011059) #26	C3H1orf185 (ENSBTAG00000009674) #27	RNF11 (ENSBTAG00000054545) #28	TTC39A (ENSBTAG00000002451) #29	ENSBTAG00000048722	EPS15 (ENSBTAG00000005542) #30	OSBPL9 (ENSBTAG00000021170) #31	NRDC (ENSBTAG00000021174) #32	RAB3B (ENSBTAG00000005337) #33	ENSBTAG00000049239	ENSBTAG00000052338	TXNDC12 (ENSBTAG00000011024) #34	BTF3L4 (ENSBTAG00000011025) #35
Siberian musk deer	MODERN SPECIES	340	ENSMMSG00000014713	CYP4X1 (ENSMMSG00000014557)	PDZK1IP1 (ENSMMSG00000014540) #9	TAL1 (ENSMMSG00000014528) #10	STIL (ENSMMSG00000014379) #11	ENSMMSG00000014328 #12	FOXE3 (ENSMMSG00000014313) #13	FOXD2 (ENSMMSG00000014302) #14	TRABD2B (ENSMMSG00000014286) #15	ENSMMSG00000014278 #16	ENSMMSG00000014251 #17	SLC5A9 (ENSMMSG00000014113) #18	SPATA6 (ENSMMSG00000014025) #19	BEND5 (ENSMMSG00000013981) #21	AGBL4 (ENSMMSG00000013891) #20	ELAVL4 (ENSMMSG00000012846) #22	DMRTA2 (ENSMMSG00000012786) #24	ENSMMSG00000012776	FAF1 (ENSMMSG00000012758) #25	CDKN2C (ENSMMSG00000012734) #26	ENSMMSG00000012725	C1orf185 (ENSMMSG00000012641) #27	RNF11 (ENSMMSG00000012629) #28	TTC39A (ENSMMSG00000012294) #29	EPS15 (ENSMMSG00000011662) #30	ENSMMSG00000011598	OSBPL9 (ENSMMSG00000011045) #31	NRDC (ENSMMSG00000010652) #32	RAB3B (ENSMMSG00000010591) #33	TXNDC12 (ENSMMSG00000010552) #34	BTF3L4 (ENSMMSG00000010474) #35
Yarkand deer	MODERN SPECIES	12	PDZK1IP1 (ENSCHYG00000023171) #9	TAL1 (ENSCHYG00000023140) #10	STIL (ENSCHYG00000023044) #11	CMPK1 (ENSCHYG00000022970) #12	FOXD2 (ENSCHYG00000022949) #14	ENSCHYG00000022932	TRABD2B (ENSCHYG00000022894) #15	ENSCHYG00000022779 #16	ENSCHYG00000022715 #17	ENSCHYG00000022669	SLC5A9 (ENSCHYG00000022514) #18	SPATA6 (ENSCHYG00000022292) #19	BEND5 (ENSCHYG00000022182) #21	ENSCHYG00000022139	AGBL4 (ENSCHYG00000021988) #20	ELAVL4 (ENSCHYG00000021125) #22	ENSCHYG00000020992	FAF1 (ENSCHYG00000020360) #25	CDKN2C (ENSCHYG00000020293) #26	C1orf185 (ENSCHYG00000020169) #27	RNF11 (ENSCHYG00000020010) #28	TTC39A (ENSCHYG00000019043) #29	EPS15 (ENSCHYG00000018363) #30	ENSCHYG00000018015	ENSCHYG00000016631 #31	ENSCHYG00000016488	NRDC (ENSCHYG00000012147) #32	RAB3B (ENSCHYG00000011948) #33	TXNDC12 (ENSCHYG00000011889) #34	BTF3L4 (ENSCHYG00000011776) #35	ZFYVE9 (ENSCHYG00000011418) #37
Camelidae	ANCESTRAL SPECIES	11	ENSGT00390000012765	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Arabian camel	MODERN SPECIES	4	ATPAF1 (ENSCDRG00005019231)	TEX38 (ENSCDRG00005019244)	EFCAB14 (ENSCDRG00005019273)	CYP4X1 (ENSCDRG00005019322)	ENSCDRG00005019371	ENSCDRG00005019396 #9	TAL1 (ENSCDRG00005019418) #10	STIL (ENSCDRG00005019454) #11	CMPK1 (ENSCDRG00005019485) #12	TRABD2B (ENSCDRG00005003535) #15	SLC5A9 (ENSCDRG00005003621) #18	ENSCDRG00005003726	SPATA6 (ENSCDRG00005003747) #19	AGBL4 (ENSCDRG00005003837) #20	BEND5 (ENSCDRG00005003960) #21	ELAVL4 (ENSCDRG00005004051) #22	DMRTA2 (ENSCDRG00005004641) #24	FAF1 (ENSCDRG00005004702) #25	CDKN2C (ENSCDRG00005004767) #26	C1orf185 (ENSCDRG00005004794) #27	TTC39A (ENSCDRG00005004896) #29	EPS15 (ENSCDRG00005005246) #30	OSBPL9 (ENSCDRG00005005422) #31	NRDC (ENSCDRG00005005602) #32	RAB3B (ENSCDRG00005005964) #33	TXNDC12 (ENSCDRG00005005982) #34	BTF3L4 (ENSCDRG00005006016) #35	ZFYVE9 (ENSCDRG00005006088) #37	CC2D1B (ENSCDRG00005006195)	ORC1 (ENSCDRG00005006434)	PRPF38A (ENSCDRG00005006492)
Alpaca	MODERN SPECIES	2449														AGBL4 (ENSVPAG00000011604) #20	BEND5 (ENSVPAG00000011605) #21	ELAVL4 (ENSVPAG00000011606) #22
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Carnivora	ANCESTRAL SPECIES	1	ENSGT00390000011196	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Caniformia	ANCESTRAL SPECIES	2	ENSGT00390000011196	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000155173.n	ENSGT00940000155173.m.e.a.a	ENSGT00940000155173.m.e.a.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831.db.a #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000155173.m.f	ENSGT00940000155173.m.e.a.a	ENSGT00940000155173.m.e.a.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831.db.a #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Dingo	MODERN SPECIES	344	ENSCAFG00020014560	ENSCAFG00020014556	CYP4X1 (ENSCAFG00020014528)	PDZK1IP1 (ENSCAFG00020014525) #9	TAL1 (ENSCAFG00020014522) #10	STIL (ENSCAFG00020014512) #11	CMPK1 (ENSCAFG00020014509) #12	FOXE3 (ENSCAFG00020014507) #13	FOXD2 (ENSCAFG00020014506) #14	TRABD2B (ENSCAFG00020014503) #15	SLC5A9 (ENSCAFG00020014477) #18	SPATA6 (ENSCAFG00020014474) #19	ENSCAFG00020014472 #20	ENSCAFG00020014471 #20	BEND5 (ENSCAFG00020014470) #21	ELAVL4 (ENSCAFG00020013581) #22	DMRTA2 (ENSCAFG00020013554) #24	ENSCAFG00020013547	ENSCAFG00020013544	ENSCAFG00020013515 #25	CDKN2C (ENSCAFG00020013503) #26	C1orf185 (ENSCAFG00020013497) #27	RNF11 (ENSCAFG00020013494) #28	TTC39A (ENSCAFG00020013487) #29	EPS15 (ENSCAFG00020013470) #30	OSBPL9 (ENSCAFG00020013459) #31	NRDC (ENSCAFG00020011213) #32	RAB3B (ENSCAFG00020011054) #33	TXNDC12 (ENSCAFG00020011048) #34	BTF3L4 (ENSCAFG00020011045) #35	ZFYVE9 (ENSCAFG00020011018) #37
Dog	MODERN SPECIES	6	CYP4B1 (ENSCAFG00845018109)	CYP4A11 (ENSCAFG00845018002)	CYP4A38 (ENSCAFG00845017288)	ENSCAFG00845017005	CYP4X1 (ENSCAFG00845016805)	PDZK1IP1 (ENSCAFG00845016726) #9	TAL1 (ENSCAFG00845016668) #10	STIL (ENSCAFG00845016474) #11	CMPK1 (ENSCAFG00845016195) #12	FOXE3 (ENSCAFG00845027178) #13	FOXD2 (ENSCAFG00845027149) #14	TRABD2B (ENSCAFG00845027015) #15	SLC5A9 (ENSCAFG00845026902) #18	SPATA6 (ENSCAFG00845026650) #19	AGBL4 (ENSCAFG00845025876) #21	ELAVL4 (ENSCAFG00845025265) #22	DMRTA2 (ENSCAFG00845025044) #24	ENSCAFG00845024999	FAF1 (ENSCAFG00845024609) #25	CDKN2C (ENSCAFG00845024510) #26	C1orf185 (ENSCAFG00845024301) #27	RNF11 (ENSCAFG00845024230) #28	TTC39A (ENSCAFG00845023616) #29	EPS15 (ENSCAFG00845022599) #30	OSBPL9 (ENSCAFG00845021857) #31	NRDC (ENSCAFG00845021372) #32	TXNDC12 (ENSCAFG00845021135) #33	BTF3L4 (ENSCAFG00845020858) #35	ZFYVE9 (ENSCAFG00845020399) #37	CC2D1B (ENSCAFG00845020123)	ORC1 (ENSCAFG00845019988)
Red fox	MODERN SPECIES	9	CYP4B1 (ENSVVUG00000007000)	ENSVVUG00000006767	ENSVVUG00000006748	ENSVVUG00000006722	ENSVVUG00000006690	CYP4X1 (ENSVVUG00000006664)	PDZK1IP1 (ENSVVUG00000006655) #9	ENSVVUG00000006648 #10	STIL (ENSVVUG00000006441) #11	CMPK1 (ENSVVUG00000006426) #12	TRABD2B (ENSVVUG00000006378) #15	SLC5A9 (ENSVVUG00000006359) #18	SPATA6 (ENSVVUG00000006346) #19	ENSVVUG00000006309 #20	BEND5 (ENSVVUG00000006293) #21	ELAVL4 (ENSVVUG00000006175) #22	ENSVVUG00000006092	ENSVVUG00000006087	ENSVVUG00000006081	FAF1 (ENSVVUG00000006069) #25	CDKN2C (ENSVVUG00000006026) #26	C1orf185 (ENSVVUG00000005980) #27	ENSVVUG00000005976	RNF11 (ENSVVUG00000005971) #28	TTC39A (ENSVVUG00000005650) #29	EPS15 (ENSVVUG00000004902) #30	OSBPL9 (ENSVVUG00000004835) #31	NRDC (ENSVVUG00000004788) #32	RAB3B (ENSVVUG00000004769) #33	KTI12 (ENSVVUG00000004765)	TXNDC12 (ENSVVUG00000004760) #34
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00950000185079.c	ENSGT00940000154290.a #37
Ursidae	ANCESTRAL SPECIES		ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000161273 #15	ENSGT00940000157546.g #18	ENSGT00940000157546.h #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT01010000229967	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00950000185079.c
Ursus	ANCESTRAL SPECIES	19	ENSGT00940000162886	ENSGT01050000244898.a.a.b	ENSGT00390000012765	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157546.h #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00950000185079.c	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Polar bear	MODERN SPECIES	218	MOB3C (ENSUMAG00000023559)	ATPAF1 (ENSUMAG00000023558)	TEX38 (ENSUMAG00000023557)	EFCAB14 (ENSUMAG00000023556)	CYP4B1 (ENSUMAG00000023554)	ENSUMAG00000023368	CYP4X1 (ENSUMAG00000023337)	PDZK1IP1 (ENSUMAG00000023333) #9	STIL (ENSUMAG00000023306) #11	CMPK1 (ENSUMAG00000023298) #12	ENSUMAG00000023291 #18	SPATA6 (ENSUMAG00000023285) #19	ENSUMAG00000023284 #20	ENSUMAG00000023282 #21	ENSUMAG00000023280	ELAVL4 (ENSUMAG00000023149) #22	ENSUMAG00000023107	ENSUMAG00000023105	FAF1 (ENSUMAG00000023099) #25	CDKN2C (ENSUMAG00000023096) #26	C1orf185 (ENSUMAG00000023093) #27	RNF11 (ENSUMAG00000023091) #28	TTC39A (ENSUMAG00000023064) #29	EPS15 (ENSUMAG00000022892) #30	OSBPL9 (ENSUMAG00000022814) #31	NRDC (ENSUMAG00000022809) #32	RAB3B (ENSUMAG00000022807) #33	ENSUMAG00000022804	TXNDC12 (ENSUMAG00000022801) #34	BTF3L4 (ENSUMAG00000022798) #35	ENSUMAG00000022797
American black bear	MODERN SPECIES	3634																ELAVL4 (ENSUAMG00000013026) #22
Giant Panda	MODERN SPECIES	11	ENSAMEG00000025041	TEX38 (ENSAMEG00000020215)	EFCAB14 (ENSAMEG00000014050)	CYP4B1 (ENSAMEG00000014075)	ENSAMEG00000029837	CYP4X1 (ENSAMEG00000000016)	PDZK1IP1 (ENSAMEG00000024007) #9	TAL1 (ENSAMEG00000029725) #10	STIL (ENSAMEG00000000013) #11	CMPK1 (ENSAMEG00000000012) #12	TRABD2B (ENSAMEG00000018869) #15	SLC5A9 (ENSAMEG00000008581) #18	SPATA6 (ENSAMEG00000008559) #19	AGBL4 (ENSAMEG00000009391) #20	BEND5 (ENSAMEG00000009379) #21	ELAVL4 (ENSAMEG00000017455) #22	ENSAMEG00000029933	DMRTA2 (ENSAMEG00000026233) #24	FAF1 (ENSAMEG00000017472) #25	ENSAMEG00000031167	CDKN2C (ENSAMEG00000028782) #26	C1orf185 (ENSAMEG00000024320) #27	RNF11 (ENSAMEG00000017484) #28	TTC39A (ENSAMEG00000017488) #29	EPS15 (ENSAMEG00000017515) #30	OSBPL9 (ENSAMEG00000008968) #31	NRDC (ENSAMEG00000009034) #32	ENSAMEG00000027180	RAB3B (ENSAMEG00000009140) #33	TXNDC12 (ENSAMEG00000009146) #34	ENSAMEG00000030584
Mustelinae	ANCESTRAL SPECIES	39																ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00900000142372	ENSGT00940000154296 #35	ENSGT00950000185079.c	ENSGT00940000154290.a #37
American mink	MODERN SPECIES	361																ELAVL4 (ENSNVIG00000018303) #22	DMRTA2 (ENSNVIG00000018412) #24	FAF1 (ENSNVIG00000018426) #25	CDN2C (ENSNVIG00000018452) #26	ENSNVIG00000018460	C1orf185 (ENSNVIG00000018467) #27	RNF11 (ENSNVIG00000018471) #28	E7EQY9 (ENSNVIG00000018488) #29	EPS15 (ENSNVIG00000018625) #30
Ferret	MODERN SPECIES	361																ELAVL4 (ENSMPUG00000007192) #22	DMRTA2 (ENSMPUG00000007160) #24	FAF1 (ENSMPUG00000007136) #25	CDKN2C (ENSMPUG00000007132) #26	RNF11 (ENSMPUG00000007108) #28	TTC39A (ENSMPUG00000007092) #29	EPS15 (ENSMPUG00000007072) #30	ENSMPUG00000007061	OSBPL9 (ENSMPUG00000007053) #31	NRDC (ENSMPUG00000007032) #32	RAB3B (ENSMPUG00000007029) #33	TXNDC12 (ENSMPUG00000007020) #34	BTF3L4 (ENSMPUG00000006966) #35	ZFYVE9 (ENSMPUG00000006950) #37	CC2D1B (ENSMPUG00000006927)	ORC1 (ENSMPUG00000006904)
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000155173.m.b	ENSGT00940000155173.m.a.a	ENSGT00940000155173.m.a.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000155173.m.a.a	ENSGT00940000155173.m.a.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00950000182922.a.a.a.b.a.b.a.a.c.a.a	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Tiger	MODERN SPECIES	100	ENSPTIG00000020880	CYP4A106 (ENSPTIG00000020491)	CYP4A37 (ENSPTIG00000018827)	CYP4X1 (ENSPTIG00000018303)	PDZK1IP1 (ENSPTIG00000018010) #9	TAL1 (ENSPTIG00000017616) #10	STIL (ENSPTIG00000011691) #11	CMPK1 (ENSPTIG00000011122) #12	TRABD2B (ENSPTIG00000009870) #15	SLC5A9 (ENSPTIG00000007011) #18	SPATA6 (ENSPTIG00000021470) #19	AGBL4 (ENSPTIG00000021182) #20	BEND5 (ENSPTIG00000020902) #21	ENSPTIG00000005063	ENSPTIG00000019852 #20	ELAVL4 (ENSPTIG00000016727) #22	FAF1 (ENSPTIG00000014264) #25	CDKN2C (ENSPTIG00000013155) #26	C1orf185 (ENSPTIG00000012429) #27	RNF11 (ENSPTIG00000012147) #28	TTC39A (ENSPTIG00000006822) #29	EPS15 (ENSPTIG00000021361) #30	OSBPL9 (ENSPTIG00000014514) #31	ENSPTIG00000014000	NRDC (ENSPTIG00000011593) #32	RAB3B (ENSPTIG00000010883) #33	TXNDC12 (ENSPTIG00000009168) #34	ENSPTIG00000006624 #35	ZFYVE9 (ENSPTIG00000020130) #37	CC2D1B (ENSPTIG00000018871)	ORC1 (ENSPTIG00000015613)
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000155173.m.a.a	ENSGT00940000155173.m.a.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00950000182922.a.a.a.b.a.b.a.a.c.a.a	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
leopard	MODERN SPECIES	16	CYP4A37 (ENSPPRG00000007723)	CYP4X1 (ENSPPRG00000008167)	PDZK1IP1 (ENSPPRG00000008341) #9	TAL1 (ENSPPRG00000008561) #10	STIL (ENSPPRG00000010998) #11	ENSPPRG00000012334 #12	FOXE3 (ENSPPRG00000012774) #13	FOXD2 (ENSPPRG00000017402) #14	TRABD2B (ENSPPRG00000013314) #15	SLC5A9 (ENSPPRG00000020008) #18	SPATA6 (ENSPPRG00000023213) #19	AGBL4 (ENSPPRG00000022863) #20	BEND5 (ENSPPRG00000022625) #21	ENSPPRG00000017680	ENSPPRG00000001721 #20	ELAVL4 (ENSPPRG00000002764) #22	DMRTA2 (ENSPPRG00000003651) #24	FAF1 (ENSPPRG00000005301) #25	CDKN2C (ENSPPRG00000005623) #26	C1orf185 (ENSPPRG00000006868) #27	RNF11 (ENSPPRG00000007187) #28	TTC39A (ENSPPRG00000010046) #29	ENSPPRG00000011797	EPS15 (ENSPPRG00000014230) #30	OSBPL9 (ENSPPRG00000002600) #31	ENSPPRG00000003302	NRDC (ENSPPRG00000005332) #32	RAB3B (ENSPPRG00000006055) #33	TXNDC12 (ENSPPRG00000006551) #34	ENSPPRG00000007572 #35	ZFYVE9 (ENSPPRG00000009797) #37
lion	MODERN SPECIES	8	ENSPLOG00000007060	ENSPLOG00000006991	ENSPLOG00000006700	CYP4X1 (ENSPLOG00000006599)	PDZK1IP1 (ENSPLOG00000006576) #9	TAL1 (ENSPLOG00000006549) #10	STIL (ENSPLOG00000006499) #11	CMPK1 (ENSPLOG00000006430) #12	FOXE3 (ENSPLOG00000006409) #13	FOXD2 (ENSPLOG00000006398) #14	TRABD2B (ENSPLOG00000006352) #15	SLC5A9 (ENSPLOG00000006218) #18	SPATA6 (ENSPLOG00000006148) #19	BEND5 (ENSPLOG00000006114) #21	AGBL4 (ENSPLOG00000006006) #20	ELAVL4 (ENSPLOG00000005634) #22	ENSPLOG00000005447	DMRTA2 (ENSPLOG00000005423) #24	ENSPLOG00000005409	FAF1 (ENSPLOG00000005328) #25	CDKN2C (ENSPLOG00000005297) #26	C1orf185 (ENSPLOG00000005287) #27	RNF11 (ENSPLOG00000005279) #28	TTC39A (ENSPLOG00000005228) #29	ENSPLOG00000005215	EPS15 (ENSPLOG00000005145) #30	ENSPLOG00000004872 #31	ENSPLOG00000004732	NRDC (ENSPLOG00000019705) #32	RAB3B (ENSPLOG00000019621) #33	ENSPLOG00000019597
Cat	MODERN SPECIES	239	ENSFCAG00000038068	ENSFCAG00000037991	CYP4A37 (ENSFCAG00000040744)	CYP4X1 (ENSFCAG00000007168)	PDZK1IP1 (ENSFCAG00000019308) #9	TAL1 (ENSFCAG00000045414) #10	STIL (ENSFCAG00000012141) #11	CMPK1 (ENSFCAG00000025426) #12	FOXE3 (ENSFCAG00000046511) #13	FOXD2 (ENSFCAG00000044804) #14	TRABD2B (ENSFCAG00000000546) #15	SLC5A9 (ENSFCAG00000000548) #18	SPATA6 (ENSFCAG00000029729) #19	AGBL4 (ENSFCAG00000000550) #20	ENSFCAG00000022016	ELAVL4 (ENSFCAG00000010438) #22	DMRTA2 (ENSFCAG00000045950) #24	FAF1 (ENSFCAG00000011327) #25	ENSFCAG00000028644	CDKN2C (ENSFCAG00000033306) #26	CC1H1orf185 (ENSFCAG00000043741) #27	RNF11 (ENSFCAG00000035271) #28	TTC39A (ENSFCAG00000014565) #29	EPS15 (ENSFCAG00000027650) #30	OSBPL9 (ENSFCAG00000010298) #31	NRDC (ENSFCAG00000022018) #32	ENSFCAG00000031410	TXNDC12 (ENSFCAG00000023885) #33	BTF3L4 (ENSFCAG00000024164) #35	ZFYVE9 (ENSFCAG00000024078) #37	CC2D1B (ENSFCAG00000002516)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Equus	ANCESTRAL SPECIES	2	ENSGT00940000155173.q.a.a	ENSGT00940000161441.c.b.a	ENSGT00940000155173.q.a.b	ENSGT00940000155173.q.b	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00900000142372	ENSGT00530000063273.a #34	ENSGT00940000154296 #35
Donkey	MODERN SPECIES	25	ENSEASG00005010169	ENSEASG00005014485	ENSEASG00005010633	ENSEASG00005010640	ENSEASG00005010647	ENSEASG00005034479	ENSEASG00005023820 #9	ENSEASG00005038126 #10	STIL (ENSEASG00005010657) #11	CMPK1 (ENSEASG00005010695) #12	TRABD2B (ENSEASG00005010700) #15	SLC5A9 (ENSEASG00005010710) #18	SPATA6 (ENSEASG00005010718) #19	AGBL4 (ENSEASG00005010721) #20	BEND5 (ENSEASG00005010723) #21	ELAVL4 (ENSEASG00005010728) #22	DMRTA2 (ENSEASG00005037248) #24	FAF1 (ENSEASG00005010732) #25	CDKN2C (ENSEASG00005010733) #26	C1orf185 (ENSEASG00005037128) #27	RNF11 (ENSEASG00005037659) #28	TTC39A (ENSEASG00005010736) #29	EPS15 (ENSEASG00005010751) #30	ENSEASG00005010925	ENSEASG00005030901 #31	OSBPL9 (ENSEASG00005010962) #31	NRDC (ENSEASG00005011045) #32	RAB3B (ENSEASG00005027002) #33	TXNDC12 (ENSEASG00005029657) #34	KTI12 (ENSEASG00005028147)	ENSEASG00005014402
Horse	MODERN SPECIES	11	ENSECAG00000046409	ENSECAG00000045102	ENSECAG00000027949	ENSECAG00000033081	CYP4X1 (ENSECAG00000020100)	TAL1 (ENSECAG00000018746) #10	STIL (ENSECAG00000011152) #11	CMPK1 (ENSECAG00000000428) #12	FOXE3 (ENSECAG00000049916) #13	TRABD2B (ENSECAG00000022697) #15	SLC5A9 (ENSECAG00000011684) #18	SPATA6 (ENSECAG00000000158) #19	ENSECAG00000055301 #20	BEND5 (ENSECAG00000051417) #21	ENSECAG00000059132 #20	ELAVL4 (ENSECAG00000022284) #22	DMRTA2 (ENSECAG00000029061) #24	ENSECAG00000044105	FAF1 (ENSECAG00000008495) #25	CDKN2C (ENSECAG00000004817) #26	C2H1orf185 (ENSECAG00000025041) #27	ENSECAG00000055972	RNF11 (ENSECAG00000036831) #28	TTC39A (ENSECAG00000015196) #29	EPS15 (ENSECAG00000020824) #30	CALR4 (ENSECAG00000015205)	ENSECAG00000017935 #31	NRDC (ENSECAG00000021612) #32	RAB3B (ENSECAG00000015669) #33	ENSECAG00000032332	KTI12 (ENSECAG00000060027)
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163987 #13	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000162562.B #16	ENSGT00940000162562.A #17	ENSGT00940000164707	ENSGT00940000157546 #18	ENSGT00990000204587	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Greater horseshoe bat	MODERN SPECIES	27	STIL (ENSRFEG00010001982) #11	ENSRFEG00010002024	CMPK1 (ENSRFEG00010002044) #12	FOXE3 (ENSRFEG00010002079) #13	FOXD2 (ENSRFEG00010002087) #14	TRABD2B (ENSRFEG00010002104) #15	ENSRFEG00010002138	ENSRFEG00010002154 #16	ENSRFEG00010002180 #17	ENSRFEG00010002204	SLC5A9 (ENSRFEG00010002222) #18	ENSRFEG00010002251	SPATA6 (ENSRFEG00010002287) #19	AGBL4 (ENSRFEG00010002410) #20	BEND5 (ENSRFEG00010002514) #21	ELAVL4 (ENSRFEG00010002640) #22	DMRTA2 (ENSRFEG00010002791) #24	FAF1 (ENSRFEG00010002825) #25	CDKN2C (ENSRFEG00010002917) #26	ENSRFEG00010002937	RNF11 (ENSRFEG00010002953) #28	TTC39A (ENSRFEG00010003039) #29	EPS15 (ENSRFEG00010003189) #30	ENSRFEG00010003316	OSBPL9 (ENSRFEG00010003405) #31	NRDC (ENSRFEG00010003552) #32	RAB3B (ENSRFEG00010003630) #33	TXNDC12 (ENSRFEG00010003659) #34	ENSRFEG00010003696 #35	ZFYVE9 (ENSRFEG00010003740) #37	CC2D1B (ENSRFEG00010003800)
Microbat	MODERN SPECIES	974	CYP4B1 (ENSMLUG00000002776)	ENSMLUG00000024150	ENSMLUG00000025621	ENSMLUG00000002780	CYP4X1 (ENSMLUG00000011781)	PDZK1IP1 (ENSMLUG00000006083) #9	TAL1 (ENSMLUG00000006388) #10	STIL (ENSMLUG00000006395) #11	TRABD2B (ENSMLUG00000010918) #15	ENSMLUG00000022445 #16	ENSMLUG00000024145 #17	SLC5A9 (ENSMLUG00000010198) #18	SPATA6 (ENSMLUG00000011417) #19	ENSMLUG00000016567 #20	BEND5 (ENSMLUG00000016578) #21	ELAVL4 (ENSMLUG00000006226) #22	DMRTA2 (ENSMLUG00000006249) #24	FAF1 (ENSMLUG00000006252) #25	CDKN2C (ENSMLUG00000006627) #26	C1orf185 (ENSMLUG00000023716) #27	ENSMLUG00000004439 #28	TTC39A (ENSMLUG00000004443) #29	EPS15 (ENSMLUG00000004454) #30	OSBPL9 (ENSMLUG00000009199) #31	NRDC (ENSMLUG00000009233) #32	RAB3B (ENSMLUG00000016868) #33	TXNDC12 (ENSMLUG00000016872) #34	ENSMLUG00000016884 #35	ZFYVE9 (ENSMLUG00000001012) #37	CC2D1B (ENSMLUG00000001023)	ORC1 (ENSMLUG00000001040)
Megabat	MODERN SPECIES	141													SLC5A9 (ENSPVAG00000003625) #18	SPATA6 (ENSPVAG00000003628) #19	AGBL4 (ENSPVAG00000003630) #20	ELAVL4 (ENSPVAG00000003632) #22
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35
Xenarthra	ANCESTRAL SPECIES	119																ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Armadillo	MODERN SPECIES	3550													ENSDNOG00000042500	ETV1 (ENSDNOG00000010823)	ENSDNOG00000041530	ELAVL4 (ENSDNOG00000033502) #22	DMRTA2 (ENSDNOG00000041150) #24	FAF1 (ENSDNOG00000032394) #25	CDKN2C (ENSDNOG00000040641) #26	C1orf185 (ENSDNOG00000035981) #27	ENSDNOG00000013675	TTC39A (ENSDNOG00000042530) #29	EPS15 (ENSDNOG00000034252) #30	ENSDNOG00000046109	OSBPL9 (ENSDNOG00000013879) #31	NRDC (ENSDNOG00000013916) #32	RAB3B (ENSDNOG00000003158) #33	TXNDC12 (ENSDNOG00000040593) #34	ENSDNOG00000003181 #35	ZFYVE9 (ENSDNOG00000008484) #37	CC2D1B (ENSDNOG00000017180)
Sloth	MODERN SPECIES	4829																ELAVL4 (ENSCHOG00000002464) #22
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35
Tenrec	MODERN SPECIES	5254																ELAVL4 (ENSETEG00000013779) #22
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00390000016446	ENSGT00390000011196	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00390000000797 #27	ENSGT00940000163721	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35
Elephant	MODERN SPECIES	145	EFCAB14 (ENSLAFG00000011146)	CYP4B1 (ENSLAFG00000011142)	ENSLAFG00000011889	ENSLAFG00000027061	ENSLAFG00000002985	PDZK1IP1 (ENSLAFG00000029973) #9	TAL1 (ENSLAFG00000013880) #10	STIL (ENSLAFG00000006255) #11	ENSLAFG00000006582	FOXD2 (ENSLAFG00000026547) #14	ENSLAFG00000032111 #15	SLC5A9 (ENSLAFG00000016268) #18	SPATA6 (ENSLAFG00000016279) #19	ENSLAFG00000012535 #20	BEND5 (ENSLAFG00000003490) #21	ELAVL4 (ENSLAFG00000001087) #22	DMRTA2 (ENSLAFG00000021953) #24	FAF1 (ENSLAFG00000012030) #25	ENSLAFG00000032567	CDKN2C (ENSLAFG00000009338) #26	C1orf185 (ENSLAFG00000030448) #27	ENSLAFG00000026503	TTC39A (ENSLAFG00000021966) #29	EPS15 (ENSLAFG00000012528) #30	ENSLAFG00000016931	OSBPL9 (ENSLAFG00000001251) #31	NRDC (ENSLAFG00000001255) #32	RAB3B (ENSLAFG00000016112) #33	TXNDC12 (ENSLAFG00000016116) #34	BTF3L4 (ENSLAFG00000016124) #35	ZFYVE9 (ENSLAFG00000008625) #37
Hyrax	MODERN SPECIES	9201																ELAVL4 (ENSPCAG00000008215) #22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	36	ENSGT01100000263536.A.a.a.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01050000245003	ENSGT01100000263536.B.c.b	ENSGT00940000163592	ENSGT00940000155097.a	ENSGT00390000008820.e.a	ENSGT00950000183593	ENSGT00940000159568	ENSGT00390000012178	ENSGT00390000012030.b.a	ENSGT00940000155902	ENSGT00940000160087	ENSGT00940000158214.e	ENSGT01020000230412.D	ENSGT00940000157399.m #22	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000182962.a.b
Opossum	MODERN SPECIES	627	ENSMODG00000045736	CYSLTR1 (ENSMODG00000004207)	ENSMODG00000004142	ENSMODG00000004077	ENSMODG00000004055	ENSMODG00000028942	ATP7A (ENSMODG00000004010)	ENSMODG00000003953	MAGT1 (ENSMODG00000003944)	ATRX (ENSMODG00000003920)	FGF16 (ENSMODG00000003900)	ENSMODG00000003877	ENSMODG00000043274	ZDHHC15 (ENSMODG00000003871)	UPRT (ENSMODG00000027579)	ENSMODG00000037297 #22	ENSMODG00000010130	ENSMODG00000014379	ENSMODG00000014370	ENSMODG00000049990	ENSMODG00000049021	ENSMODG00000014364	POF1B (ENSMODG00000014360)	ZNF711 (ENSMODG00000014346)	ENSMODG00000047591	ENSMODG00000014335	ENSMODG00000027748	ENSMODG00000014330	ENSMODG00000047117	ENSMODG00000014317	HDX (ENSMODG00000014307)
Marsupialia_b	ANCESTRAL SPECIES	32	ENSGT01100000263536.A.a.a.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01050000245003	ENSGT01100000263536.B.c.b	ENSGT00940000163592	ENSGT00940000155097.a	ENSGT00390000008820.e.a	ENSGT00940000163576	ENSGT00940000159568	ENSGT00390000012178	ENSGT00390000012030.b.a	ENSGT00940000155902.i	ENSGT00940000160087	ENSGT00940000158214.e	ENSGT01020000230412.D	ENSGT00940000157399.m #22	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000182962.a.b	ENSGT00940000160347.f.a.b
Diprotodontia	ANCESTRAL SPECIES	72	ENSGT01100000263536.A.a.a.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01050000245003	ENSGT01100000263536.B.c.b	ENSGT00940000163592	ENSGT00940000155097.a	ENSGT00390000008820.e.a	ENSGT00940000163576	ENSGT00940000159568	ENSGT00390000012178	ENSGT00390000012030.b.a	ENSGT00940000155902.i	ENSGT00940000160087	ENSGT00940000158214.e	ENSGT01020000230412.D	ENSGT00940000157399.m #22	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000182962.a.b	ENSGT00940000160347.f.a.b
Diprotodontia_a	ANCESTRAL SPECIES	69	ENSGT01100000263536.A.a.a.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01050000245003	ENSGT01100000263536.B.c.b	ENSGT00940000163592	ENSGT00940000155097.a	ENSGT00390000008820.e.a.g	ENSGT00940000163576	ENSGT00940000159568	ENSGT00390000012178	ENSGT00390000012030.b.a	ENSGT00940000155902.i	ENSGT00940000160087	ENSGT00940000158214.e	ENSGT01020000230412.D	ENSGT00940000157399.m #22	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000182962.a.b	ENSGT00940000160347.f.a.b
Common wonbat	MODERN SPECIES	256	P2RY10 (ENSVURG00010010733)	LPAR4 (ENSVURG00010010729)	ENSVURG00010010723	CYSLTR1 (ENSVURG00010010720)	ENSVURG00010006043	ENSVURG00010005813	ENSVURG00010005765	ATP7A (ENSVURG00010005745)	ENSVURG00010005732	MAGT1 (ENSVURG00010005717)	ENSVURG00010005709	ATRX (ENSVURG00010005552)	FGF16 (ENSVURG00010005505)	ZDHHC15 (ENSVURG00010005482)	UPRT (ENSVURG00010005471)	ENSVURG00010005447 #22	ABCB7 (ENSVURG00010005380)	NEXMIF (ENSVURG00010005349)	RLIM (ENSVURG00010005341)	SLC16A2 (ENSVURG00010005326)	ENSVURG00010005317
koala	MODERN SPECIES	153	P2RY10 (ENSPCIG00000007695)	LPAR4 (ENSPCIG00000036415)	ENSPCIG00000007698	CYSLTR1 (ENSPCIG00000028506)	ENSPCIG00000026996	ENSPCIG00000026916	ENSPCIG00000026908	ENSPCIG00000026914	ATP7A (ENSPCIG00000026898)	ENSPCIG00000026893	MAGT1 (ENSPCIG00000026890)	ATRX (ENSPCIG00000017088)	FGF16 (ENSPCIG00000017103)	ZDHHC15 (ENSPCIG00000017111)	UPRT (ENSPCIG00000017115)	ENSPCIG00000017116 #22	ABCB7 (ENSPCIG00000017133)	NEXMIF (ENSPCIG00000017144)	RLIM (ENSPCIG00000017146)	SLC16A2 (ENSPCIG00000017147)	ENSPCIG00000033337
Tasmanian devil	MODERN SPECIES	21	P2RY10 (ENSSHAG00000028613)	ENSSHAG00000026487	ENSSHAG00000014281	CYSLTR1 (ENSSHAG00000013758)	ENSSHAG00000013267	ENSSHAG00000023354	ENSSHAG00000001853	ENSSHAG00000022184	ENSSHAG00000012787	ENSSHAG00000020548	MAGT1 (ENSSHAG00000012304)	ENSSHAG00000011030	ENSSHAG00000021047	ENSSHAG00000023346	UPRT (ENSSHAG00000029910)	ENSSHAG00000001657 #22	ABCB7 (ENSSHAG00000003945)	NEXMIF (ENSSHAG00000031074)	ENSSHAG00000009097	ENSSHAG00000026777	ENSSHAG00000010807	ENSSHAG00000025140	ENSSHAG00000021271	ENSSHAG00000021973	ENSSHAG00000004084	ENSSHAG00000025700	ENSSHAG00000021754	ENSSHAG00000001212	ENSSHAG00000015562	ENSSHAG00000015847	ENSSHAG00000028813
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000011196	ENSGT00940000155173.w.b	ENSGT00940000161441.a	ENSGT00940000155173.x.b	ENSGT00940000155173.x.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546.j #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399.n #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Opossum	MODERN SPECIES	1	EFCAB14 (ENSMODG00000001906)	ENSMODG00000001890	ENSMODG00000045742	ENSMODG00000001709	ENSMODG00000025699	ENSMODG00000001521	ENSMODG00000001509 #9	TAL1 (ENSMODG00000001502) #10	STIL (ENSMODG00000001494) #11	CMPK1 (ENSMODG00000001470) #12	ENSMODG00000001419	TRABD2B (ENSMODG00000025378) #15	ENSMODG00000001399 #18	SPATA6 (ENSMODG00000001370) #19	ENSMODG00000043124	ELAVL4 (ENSMODG00000001300) #22	ENSMODG00000037117	ENSMODG00000028629	DMRTA2 (ENSMODG00000001251) #24	FAF1 (ENSMODG00000001243) #25	CDKN2C (ENSMODG00000050495) #26	RNF11 (ENSMODG00000001185) #28	TTC39A (ENSMODG00000001179) #29	ENSMODG00000001043 #30	ENSMODG00000043919 #30	ENSMODG00000000946	OSBPL9 (ENSMODG00000000934) #31	NRDC (ENSMODG00000000839) #32	RAB3B (ENSMODG00000040379) #33	KTI12 (ENSMODG00000000774)	TXNDC12 (ENSMODG00000025408) #34
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000155173.w.b	ENSGT00940000155173.w.a	ENSGT00940000161441.a	ENSGT00940000155173.x.b	ENSGT00940000155173.x.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546.j #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399.n #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00390000002443	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000024463	ENSSHAG00000031091	ENSSHAG00000002195	ENSSHAG00000003731	ENSSHAG00000030071	ENSSHAG00000011157	ENSSHAG00000025781 #9	TAL1 (ENSSHAG00000023407) #10	STIL (ENSSHAG00000010095) #11	CMPK1 (ENSSHAG00000009766) #12	FOXD2 (ENSSHAG00000020552) #14	ENSSHAG00000011466 #15	SPATA6 (ENSSHAG00000009732) #19	ENSSHAG00000008897 #20	ENSSHAG00000028157 #21	ELAVL4 (ENSSHAG00000030056) #22	FAF1 (ENSSHAG00000011175) #25	CDKN2C (ENSSHAG00000028975) #26	ENSSHAG00000032332	ENSSHAG00000029224	TTC39A (ENSSHAG00000008699) #29	EPS15 (ENSSHAG00000007854) #30	ENSSHAG00000006819	OSBPL9 (ENSSHAG00000004308) #31	NRDC (ENSSHAG00000002791) #32	RAB3B (ENSSHAG00000028384) #33	KTI12 (ENSSHAG00000032395)	TXNDC12 (ENSSHAG00000022310) #34	BTF3L4 (ENSSHAG00000025846) #35	ZFYVE9 (ENSSHAG00000007305) #37	CC2D1B (ENSSHAG00000007051)
Diprotodontia	ANCESTRAL SPECIES	80											ENSGT00940000161273 #15	ENSGT00940000157546.j #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399.n #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000155173.w.a	ENSGT00940000161441.b.a.a	ENSGT00940000161441.a	ENSGT00940000155173.x.b	ENSGT00940000155173.x.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546.j #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000157399.n #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Common wonbat	MODERN SPECIES	1060	ENSVURG00010017567	ENSVURG00010017579	ENSVURG00010017586	PDZK1IP1 (ENSVURG00010017600) #9	TAL1 (ENSVURG00010017608) #10	STIL (ENSVURG00010017620) #11	CMPK1 (ENSVURG00010017630) #12	ENSVURG00010017639	FOXD2 (ENSVURG00010017640) #14	TRABD2B (ENSVURG00010017643) #15	SLC5A9 (ENSVURG00010017646) #18	SPATA6 (ENSVURG00010017656) #19	ENSVURG00010017676 #20	BEND5 (ENSVURG00010017683) #21	ENSVURG00010017690	ELAVL4 (ENSVURG00010017721) #22	DMRTA2 (ENSVURG00010018172) #24	FAF1 (ENSVURG00010018181) #25	CDKN2C (ENSVURG00010018190) #26	RNF11 (ENSVURG00010018204) #28	TTC39A (ENSVURG00010018213) #29	EPS15 (ENSVURG00010018256) #30	ENSVURG00010018275	OSBPL9 (ENSVURG00010018296) #31	NRDC (ENSVURG00010018372) #32	TXNDC12 (ENSVURG00010018423) #34	KTI12 (ENSVURG00010018437)	BTF3L4 (ENSVURG00010018442) #35	ZFYVE9 (ENSVURG00010018455) #37	CC2D1B (ENSVURG00010018471)	ORC1 (ENSVURG00010018481)
koala	MODERN SPECIES	29	ENSPCIG00000026492	ENSPCIG00000026491	ENSPCIG00000006228	PDZK1IP1 (ENSPCIG00000006233) #9	TAL1 (ENSPCIG00000033850) #10	STIL (ENSPCIG00000006238) #11	ENSPCIG00000016606	ENSPCIG00000016604	FOXD2 (ENSPCIG00000024785) #14	TRABD2B (ENSPCIG00000036779) #15	SLC5A9 (ENSPCIG00000019164) #18	SPATA6 (ENSPCIG00000004132) #19	ENSPCIG00000012506 #20	BEND5 (ENSPCIG00000004124) #21	ENSPCIG00000033716 #20	ELAVL4 (ENSPCIG00000032142) #22	DMRTA2 (ENSPCIG00000030921) #24	FAF1 (ENSPCIG00000001340) #25	CDKN2C (ENSPCIG00000001502) #26	RNF11 (ENSPCIG00000017406) #28	TTC39A (ENSPCIG00000006797) #29	EPS15 (ENSPCIG00000030216) #30	ENSPCIG00000030211	OSBPL9 (ENSPCIG00000024185) #31	NRDC (ENSPCIG00000024193) #32	RAB3B (ENSPCIG00000024200) #33	TXNDC12 (ENSPCIG00000024201) #34	KTI12 (ENSPCIG00000031326)	ENSPCIG00000024202 #35	ZFYVE9 (ENSPCIG00000024205) #37	CC2D1B (ENSPCIG00000024235)
Wallaby	MODERN SPECIES	6598																ELAVL4 (ENSMEUG00000007145) #22
Platypus	MODERN SPECIES	9	LURAP1 (ENSOANG00000044785)	POMGNT1 (ENSOANG00000039832)	ENSOANG00000014732	ENSOANG00000002637	ENSOANG00000002639	PDZK1IP1 (ENSOANG00000042171) #9	TAL1 (ENSOANG00000032005) #10	ENSOANG00000002942 #11	ENSOANG00000015215	ENSOANG00000043767	ENSOANG00000030729	TRABD2B (ENSOANG00000037757) #15	SLC5A9 (ENSOANG00000004257) #18	ENSOANG00000041444 #19	BEND5 (ENSOANG00000009132) #21	ELAVL4 (ENSOANG00000036778) #22	DMRTA2 (ENSOANG00000040884) #24	FAF1 (ENSOANG00000006035) #25	CDKN2C (ENSOANG00000040623) #26	ENSOANG00000045226 #27	ENSOANG00000050041	RNF11 (ENSOANG00000013493) #28	TTC39A (ENSOANG00000013494) #29	ENSOANG00000014893	ENSOANG00000048539 #30	ENSOANG00000012572	OSBPL9 (ENSOANG00000040748) #31	NRDC (ENSOANG00000050474) #32	TXNDC12 (ENSOANG00000047968) #34	ENSOANG00000040000 #35	ZFYVE9 (ENSOANG00000050250) #37
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000161527.d.b.a	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000161527.d.b.a.c	ENSGT00940000161527.d.a.c	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Argentine black and white tegu	MODERN SPECIES	16	ENSSMRG00000018331	ENSSMRG00000018315	ENSSMRG00000018313	PDZK1IP1 (ENSSMRG00000018312) #9	TAL1 (ENSSMRG00000018311) #10	STIL (ENSSMRG00000018309) #11	ENSSMRG00000018308	ENSSMRG00000018307	ENSSMRG00000018306	SLC5A9 (ENSSMRG00000018304) #18	ENSSMRG00000018303	SPATA6 (ENSSMRG00000018302) #19	ENSSMRG00000018301 #20	BEND5 (ENSSMRG00000018300) #21	ENSSMRG00000018299 #20	ELAVL4 (ENSSMRG00000018298) #22	ENSSMRG00000018296	DMRTA2 (ENSSMRG00000018294) #24	FAF1 (ENSSMRG00000018293) #25	CDKN2C (ENSSMRG00000018292) #26	TTC39A (ENSSMRG00000018291) #29	RNF11 (ENSSMRG00000018290) #28	EPS15 (ENSSMRG00000018289) #30	ENSSMRG00000018288	OSBPL9 (ENSSMRG00000018287) #31	ENSSMRG00000018286 #32	RAB3B (ENSSMRG00000018285) #33	TXNDC12 (ENSSMRG00000018284) #34	ENSSMRG00000018283 #35	ZFYVE9 (ENSSMRG00000018282) #37	CC2D1B (ENSSMRG00000018269)
Common wall lizard	MODERN SPECIES	14	PDZK1IP1 (ENSPMRG00000007777) #9	TAL1 (ENSPMRG00000007774) #10	STIL (ENSPMRG00000007767) #11	ENSPMRG00000007758	ENSPMRG00000007733	FOXD2 (ENSPMRG00000007722) #14	TRABD2B (ENSPMRG00000007718) #15	SLC5A9 (ENSPMRG00000007711) #18	ENSPMRG00000007706	SPATA6 (ENSPMRG00000006072) #19	ENSPMRG00000006060 #20	BEND5 (ENSPMRG00000006049) #21	ENSPMRG00000006044	ENSPMRG00000006039	ENSPMRG00000006025 #20	ELAVL4 (ENSPMRG00000005996) #22	ENSPMRG00000005978	DMRTA2 (ENSPMRG00000005970) #24	FAF1 (ENSPMRG00000005947) #25	CDKN2C (ENSPMRG00000005936) #26	RNF11 (ENSPMRG00000005930) #28	TTC39A (ENSPMRG00000005792) #29	EPS15 (ENSPMRG00000005708) #30	ENSPMRG00000005528	OSBPL9 (ENSPMRG00000005493) #31	ENSPMRG00000005468 #32	RAB3B (ENSPMRG00000005462) #33	TXNDC12 (ENSPMRG00000005450) #34	BTF3L4 (ENSPMRG00000005442) #35	ZFYVE9 (ENSPMRG00000005429) #37	CC2D1B (ENSPMRG00000005406)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000161527.d.b.a.d	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000163630.Q.e.a	ENSGT01030000234712.a	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000011196	ENSGT00940000161527.c.b	ENSGT00940000161527.d.a	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724.d #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Indian cobra	MODERN SPECIES	2	ENSNNAG00000009790	EFCAB14 (ENSNNAG00000009832)	ENSNNAG00000009903	ENSNNAG00000009996	TAL1 (ENSNNAG00000010424) #10	STIL (ENSNNAG00000010456) #11	CMPK1 (ENSNNAG00000010501) #12	ENSNNAG00000010525	FOXD2 (ENSNNAG00000010546) #14	TRABD2B (ENSNNAG00000010576) #15	SLC5A9 (ENSNNAG00000010629) #18	SPATA6 (ENSNNAG00000010665) #19	ENSNNAG00000010704 #20	BEND5 (ENSNNAG00000010746) #21	ENSNNAG00000010783 #20	ELAVL4 (ENSNNAG00000010818) #22	DMRTA2 (ENSNNAG00000010977) #24	FAF1 (ENSNNAG00000010998) #25	ENSNNAG00000011066	ENSNNAG00000011091	CDKN2C (ENSNNAG00000011113) #26	RNF11 (ENSNNAG00000011128) #28	TTC39A (ENSNNAG00000011153) #29	EPS15 (ENSNNAG00000011248) #30	ENSNNAG00000011439	OSBPL9 (ENSNNAG00000011517) #31	ENSNNAG00000011679 #32	RAB3B (ENSNNAG00000011777) #33	TXNDC12 (ENSNNAG00000011791) #34	BTF3L4 (ENSNNAG00000011810) #35	ZFYVE9 (ENSNNAG00000011864) #37
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000011196	ENSGT00940000161527.c.b	ENSGT00940000161527.d.a	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724.d #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00940000161527.c.b	ENSGT00940000161527.d.a	ENSGT00980000201417	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724.d #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Mainland tiger snake	MODERN SPECIES	13	EFCAB14 (ENSNSUG00000016171)	ENSNSUG00000016172	ENSNSUG00000016173	ENSNSUG00000016174	TAL1 (ENSNSUG00000016175) #10	STIL (ENSNSUG00000016176) #11	CMPK1 (ENSNSUG00000016179) #12	ENSNSUG00000016180	FOXD2 (ENSNSUG00000016181) #14	TRABD2B (ENSNSUG00000016185) #15	SLC5A9 (ENSNSUG00000016192) #18	SPATA6 (ENSNSUG00000016298) #19	ENSNSUG00000016299 #20	BEND5 (ENSNSUG00000016300) #21	ENSNSUG00000016301 #20	ELAVL4 (ENSNSUG00000016302) #22	DMRTA2 (ENSNSUG00000016323) #24	FAF1 (ENSNSUG00000016324) #25	CDKN2C (ENSNSUG00000016325) #26	TTC39A (ENSNSUG00000016326) #29	EPS15 (ENSNSUG00000016327) #30	ENSNSUG00000016329	OSBPL9 (ENSNSUG00000016390) #31	ENSNSUG00000017629 #32	RAB3B (ENSNSUG00000018184) #33	TXNDC12 (ENSNSUG00000018185) #34	BTF3L4 (ENSNSUG00000018186) #35	ZFYVE9 (ENSNSUG00000018187) #37	CC2D1B (ENSNSUG00000018188)	ORC1 (ENSNSUG00000018308)	PRPF38A (ENSNSUG00000018309)
Eastern brown snake	MODERN SPECIES	34	EFCAB14 (ENSPTXG00000001523)	ENSPTXG00000001527	ENSPTXG00000001532	ENSPTXG00000001545	ENSPTXG00000001547 #10	STIL (ENSPTXG00000001553) #11	ENSPTXG00000001577	ENSPTXG00000001580	FOXD2 (ENSPTXG00000001582) #14	TRABD2B (ENSPTXG00000001584) #15	SLC5A9 (ENSPTXG00000001588) #18	SPATA6 (ENSPTXG00000001592) #19	AGBL4 (ENSPTXG00000001598) #20	BEND5 (ENSPTXG00000001603) #21	ENSPTXG00000001605	ELAVL4 (ENSPTXG00000001627) #22	ENSPTXG00000001878	DMRTA2 (ENSPTXG00000001879) #24	FAF1 (ENSPTXG00000001880) #25	CDKN2C (ENSPTXG00000001881) #26	RNF11 (ENSPTXG00000001882) #28	TTC39A (ENSPTXG00000001883) #29	EPS15 (ENSPTXG00000001884) #30	ENSPTXG00000001890	OSBPL9 (ENSPTXG00000001894) #31	ENSPTXG00000001900 #32	RAB3B (ENSPTXG00000001902) #33	TXNDC12 (ENSPTXG00000001903) #34	BTF3L4 (ENSPTXG00000001904) #35	ZFYVE9 (ENSPTXG00000001906) #37	CC2D1B (ENSPTXG00000001910)
Blue-lipped sea krait	MODERN SPECIES	4911															ENSLLTG00000009030	ENSLLTG00000009019 #22
Lizard	MODERN SPECIES	3	NSUN4 (ENSACAG00000043184)	FAAH (ENSACAG00000002040)	ENSACAG00000001984	ENSACAG00000028412	ENSACAG00000029353	ENSACAG00000001951	ENSACAG00000001932	ENSACAG00000001870	ENSACAG00000034956	ENSACAG00000001833	ENSACAG00000034569	ENSACAG00000041940	ENSACAG00000035349 #20	ENSACAG00000043345	ENSACAG00000037944	ELAVL4 (ENSACAG00000004527) #22	ENSACAG00000042237	DMRTA2 (ENSACAG00000007289) #24	FAF1 (ENSACAG00000007308) #25	CDKN2C (ENSACAG00000039282) #26	RNF11 (ENSACAG00000007410) #28	EPS15 (ENSACAG00000007433) #30	ENSACAG00000022598	OSBPL9 (ENSACAG00000007574) #31	ENSACAG00000007741 #32	RAB3B (ENSACAG00000043816) #33	TXNDC12 (ENSACAG00000008073) #34	BTF3L4 (ENSACAG00000038457) #35	ZFYVE9 (ENSACAG00000008107) #37	CC2D1B (ENSACAG00000008185)	ORC1 (ENSACAG00000008199)
tuatara	MODERN SPECIES	1725	CYP4B1 (ENSSPUG00000009405)	CYP4B35 (ENSSPUG00000009557)	CYP4B36 (ENSSPUG00000009899)	CYP4B37 (ENSSPUG00000010107)	CYP4B38 (ENSSPUG00000010929)	TAL1 (ENSSPUG00000011173) #10	STIL (ENSSPUG00000011248) #11	ENSSPUG00000011504	ENSSPUG00000011518	FOXD2 (ENSSPUG00000011531) #14	SLC5A9 (ENSSPUG00000011544) #18	SPATA6 (ENSSPUG00000011583) #19	ENSSPUG00000011592 #20	ENSSPUG00000011602 #21	ENSSPUG00000011621 #20	ELAVL4 (ENSSPUG00000011636) #22	FAF1 (ENSSPUG00000011732) #25	CDKN2C (ENSSPUG00000011758) #26	RNF11 (ENSSPUG00000011773) #28	TTC39A (ENSSPUG00000011783) #29	EPS15 (ENSSPUG00000011819) #30	ENSSPUG00000011863	ENSSPUG00000011884 #31	OSBPL9 (ENSSPUG00000012142) #31	ENSSPUG00000013001 #32	RAB3B (ENSSPUG00000013039) #33	TXNDC12 (ENSSPUG00000013056) #34	BTF3L4 (ENSSPUG00000013095) #35	ZFYVE9 (ENSSPUG00000013150) #37	CC2D1B (ENSSPUG00000013186)	ORC1 (ENSSPUG00000013234)
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Aves	ANCESTRAL SPECIES	7	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00390000002443	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Great tit	MODERN SPECIES	28	ENSPMJG00000000189	ENSPMJG00000000216	PDZK1IP1 (ENSPMJG00000000226) #9	TAL1 (ENSPMJG00000000238) #10	STIL (ENSPMJG00000000254) #11	ENSPMJG00000000275	FOXE1 (ENSPMJG00000000299)	FOXD2 (ENSPMJG00000000414) #14	TRABD2B (ENSPMJG00000000435) #15	SLC5A9 (ENSPMJG00000000463) #18	SPATA6 (ENSPMJG00000000488) #19	ENSPMJG00000000555	AGBL4 (ENSPMJG00000000580) #20	BEND5 (ENSPMJG00000000641) #21	ENSPMJG00000000668	ELAVL4 (ENSPMJG00000000678) #22	DMRTA2 (ENSPMJG00000000744) #24	FAF1 (ENSPMJG00000000748) #25	CDKN2C (ENSPMJG00000000777) #26	RNF11 (ENSPMJG00000000863) #28	TTC39A (ENSPMJG00000000876) #29	EPS15 (ENSPMJG00000000916) #30	OSBPL9 (ENSPMJG00000000976) #31	NRDC (ENSPMJG00000000992) #32	RAB3B (ENSPMJG00000001022) #33	TXNDC12 (ENSPMJG00000001041) #34	KTI12 (ENSPMJG00000001054)	BTF3L4 (ENSPMJG00000001056) #35	ZFYVE9 (ENSPMJG00000001063) #37	CC2D1B (ENSPMJG00000001070)	ORC1 (ENSPMJG00000001082)
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A.cb.a
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A.cb.a
Medium ground finch	MODERN SPECIES	48															BEND5 (ENSGFOG00000004253) #21	ELAVL4 (ENSGFOG00000004297) #22	FAF1 (ENSGFOG00000004333) #25	CDKN2C (ENSGFOG00000004345) #26	ENSGFOG00000004350	TTC39A (ENSGFOG00000004364) #29	EPS15 (ENSGFOG00000004499) #30	OSBPL9 (ENSGFOG00000005258) #31	NRDC (ENSGFOG00000006315) #32	RAB3B (ENSGFOG00000008466) #33	TXNDC12 (ENSGFOG00000008474) #34	BTF3L4 (ENSGFOG00000008518) #35	ZFYVE9 (ENSGFOG00000008523) #37	CC2D1B (ENSGFOG00000008541)	ORC1 (ENSGFOG00000008581)	PRPF38A (ENSGFOG00000008596)	TUT4 (ENSGFOG00000008607)
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A.cb.a
Zebra finch	MODERN SPECIES	30	ENSTGUG00000019172	EFCAB14 (ENSTGUG00000008408)	ENSTGUG00000008418	ENSTGUG00000008524	PDZK1IP1 (ENSTGUG00000008532) #9	TAL1 (ENSTGUG00000008542) #10	STIL (ENSTGUG00000008545) #11	ENSTGUG00000008563	ENSTGUG00000023854	FOXD2 (ENSTGUG00000023676) #14	TRABD2B (ENSTGUG00000028844) #15	SLC5A9 (ENSTGUG00000028559) #18	SPATA6 (ENSTGUG00000025010) #19	AGBL4 (ENSTGUG00000008586) #20	BEND5 (ENSTGUG00000008591) #21	ELAVL4 (ENSTGUG00000008597) #22	DMRTA2 (ENSTGUG00000028863) #24	FAF1 (ENSTGUG00000008610) #25	CDKN2C (ENSTGUG00000026124) #26	RNF11 (ENSTGUG00000022215) #28	TTC39A (ENSTGUG00000008658) #29	EPS15 (ENSTGUG00000008685) #30	OSBPL9 (ENSTGUG00000008771) #31	NRDC (ENSTGUG00000008815) #32	RAB3B (ENSTGUG00000008894) #33	TXNDC12 (ENSTGUG00000008899) #34	BTF3L4 (ENSTGUG00000027297) #35	ZFYVE9 (ENSTGUG00000008916) #37	CC2D1B (ENSTGUG00000008952)	ORC1 (ENSTGUG00000008984)	ENSTGUG00000008995
Common canary	MODERN SPECIES	9	ATPAF1 (ENSSCAG00000003265)	EFCAB14 (ENSSCAG00000003273)	ENSSCAG00000003281	ENSSCAG00000003305	PDZK1IP1 (ENSSCAG00000003514) #9	ENSSCAG00000003518 #10	STIL (ENSSCAG00000003537) #11	ENSSCAG00000003547	FOXE1 (ENSSCAG00000003549)	TRABD2B (ENSSCAG00000003575) #15	SLC5A9 (ENSSCAG00000003587) #18	SPATA6 (ENSSCAG00000003616) #19	ENSSCAG00000003625 #20	BEND5 (ENSSCAG00000003637) #21	ENSSCAG00000003665 #20	ELAVL4 (ENSSCAG00000003671) #22	FAF1 (ENSSCAG00000003680) #25	CDKN2C (ENSSCAG00000003689) #26	ENSSCAG00000003699	TTC39A (ENSSCAG00000003706) #29	EPS15 (ENSSCAG00000003714) #30	OSBPL9 (ENSSCAG00000003797) #31	NRDC (ENSSCAG00000004323) #32	RAB3B (ENSSCAG00000005800) #33	TXNDC12 (ENSSCAG00000005806) #34	BTF3L4 (ENSSCAG00000005810) #35	ZFYVE9 (ENSSCAG00000005814) #37	CC2D1B (ENSSCAG00000005820)	ORC1 (ENSSCAG00000005826)	PRPF38A (ENSSCAG00000005834)	TUT4 (ENSSCAG00000005850)
Flycatcher	MODERN SPECIES	27	EFCAB14 (ENSFALG00000009363)	ENSFALG00000009359	ENSFALG00000009327	PDZK1IP1 (ENSFALG00000009311) #9	TAL1 (ENSFALG00000009303) #10	STIL (ENSFALG00000009298) #11	ENSFALG00000025721	ENSFALG00000009291	TRABD2B (ENSFALG00000005263) #15	SLC5A9 (ENSFALG00000005278) #18	ENSFALG00000025840	SPATA6 (ENSFALG00000005303) #19	ENSFALG00000005309 #20	BEND5 (ENSFALG00000005315) #21	AGBL4 (ENSFALG00000025862) #20	ELAVL4 (ENSFALG00000025747) #22	DMRTA2 (ENSFALG00000005353) #24	FAF1 (ENSFALG00000005360) #25	CDKN2C (ENSFALG00000005371) #26	ENSFALG00000005378	TTC39A (ENSFALG00000005395) #29	EPS15 (ENSFALG00000005442) #30	OSBPL9 (ENSFALG00000005477) #31	NRDC (ENSFALG00000005499) #32	RAB3B (ENSFALG00000005545) #33	TXNDC12 (ENSFALG00000027173) #34	BTF3L4 (ENSFALG00000023382) #35	ZFYVE9 (ENSFALG00000005568) #37	CC2D1B (ENSFALG00000005577)	ORC1 (ENSFALG00000005588)	ENSFALG00000005598
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A
Golden eagle	MODERN SPECIES	3	ENSACCG00020009272	ENSACCG00020009286	PDZK1IP1 (ENSACCG00020009303) #9	TAL1 (ENSACCG00020009310) #10	STIL (ENSACCG00020009378) #11	ENSACCG00020009428	ENSACCG00020009431	ENSACCG00020009444	FOXD2 (ENSACCG00020009458) #14	TRABD2B (ENSACCG00020009471) #15	ENSACCG00020009515	SPATA6 (ENSACCG00020009549) #19	ENSACCG00020009573 #20	BEND5 (ENSACCG00020009603) #21	ENSACCG00020009618 #20	ELAVL4 (ENSACCG00020009639) #22	DMRTA2 (ENSACCG00020009658) #24	FAF1 (ENSACCG00020009672) #25	CDKN2C (ENSACCG00020002458) #26	RNF11 (ENSACCG00020002601) #28	TTC39A (ENSACCG00020003801) #29	EPS15 (ENSACCG00020005155) #30	OSBPL9 (ENSACCG00020005731) #31	NRDC (ENSACCG00020006735) #32	RAB3B (ENSACCG00020007161) #33	TXNDC12 (ENSACCG00020007281) #34	BTF3L4 (ENSACCG00020007446) #35	ZFYVE9 (ENSACCG00020007605) #37	CC2D1B (ENSACCG00020007951)	ORC1 (ENSACCG00020008273)	PRPF38A (ENSACCG00020008402)
Kakapo	MODERN SPECIES	25	ENSSHBG00005006437	PDZK1IP1 (ENSSHBG00005007075) #9	TAL1 (ENSSHBG00005007088) #10	STIL (ENSSHBG00005007114) #11	ENSSHBG00005007170	ENSSHBG00005007192	FOXD2 (ENSSHBG00005007218) #14	TRABD2B (ENSSHBG00005007228) #15	SLC5A9 (ENSSHBG00005007272) #18	ENSSHBG00005007346 #19	ENSSHBG00005007361	ENSSHBG00005007379 #19	ENSSHBG00005007400 #20	BEND5 (ENSSHBG00005007417) #21	ENSSHBG00005007432 #20	ELAVL4 (ENSSHBG00005007474) #22	DMRTA2 (ENSSHBG00005007507) #24	FAF1 (ENSSHBG00005007518) #25	CDKN2C (ENSSHBG00005007538) #26	RNF11 (ENSSHBG00005007556) #28	TTC39A (ENSSHBG00005007564) #29	EPS15 (ENSSHBG00005007582) #30	OSBPL9 (ENSSHBG00005007839) #31	NRDC (ENSSHBG00005008330) #32	RAB3B (ENSSHBG00005008352) #33	TXNDC12 (ENSSHBG00005008357) #34	BTF3L4 (ENSSHBG00005008362) #35	ZFYVE9 (ENSSHBG00005008377) #37	CC2D1B (ENSSHBG00005008448)	ORC1 (ENSSHBG00005008482)	PRPF38A (ENSSHBG00005008500)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a.b #29	ENSGT00940000155751 #30	ENSGT00940000154690.hc.b #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A
Japanese quail	MODERN SPECIES	26	ATPAF1 (ENSCJPG00005010072)	EFCAB14 (ENSCJPG00005010073)	ENSCJPG00005010074	ENSCJPG00005010075	TAL1 (ENSCJPG00005010076) #10	STIL (ENSCJPG00005010077) #11	ENSCJPG00005010078	ENSCJPG00005010079	FOXD2 (ENSCJPG00005010080) #14	TRABD2B (ENSCJPG00005010082) #15	SLC5A9 (ENSCJPG00005010085) #18	SPATA6 (ENSCJPG00005010270) #19	ENSCJPG00005010271	AGBL4 (ENSCJPG00005010272) #20	BEND5 (ENSCJPG00005010274) #21	ELAVL4 (ENSCJPG00005010275) #22	DMRTA2 (ENSCJPG00005010277) #24	FAF1 (ENSCJPG00005010278) #25	CDKN2C (ENSCJPG00005010445) #26	RNF11 (ENSCJPG00005010446) #28	TTC39A (ENSCJPG00005010447) #29	EPS15 (ENSCJPG00005010459) #30	OSBPL9 (ENSCJPG00005011698) #31	NRDC (ENSCJPG00005011887) #32	RAB3B (ENSCJPG00005011888) #33	TXNDC12 (ENSCJPG00005011890) #34	BTF3L4 (ENSCJPG00005011891) #35	ZFYVE9 (ENSCJPG00005011892) #37	CC2D1B (ENSCJPG00005011893)	ORC1 (ENSCJPG00005011895)	PRPF38A (ENSCJPG00005011901)
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00390000012765	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00940000163721	ENSGT00950000182917.a.b.a.b #29	ENSGT00940000155751 #30	ENSGT00940000154690.gc #31	ENSGT00940000154690.hc.b #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00530000063498.B	ENSGT00730000111085.A
Turkey	MODERN SPECIES	1	ENSMGAG00000011197 #37	ENSMGAG00000011113 #35	ENSMGAG00000018625	ENSMGAG00000011102 #34	ENSMGAG00000011090	RAB3B (ENSMGAG00000018796) #33	ENSMGAG00000011030 #31	ENSMGAG00000011057 #32	ENSMGAG00000019881 #31	EPS15 (ENSMGAG00000010996) #30	ENSMGAG00000022271 #29	ENSMGAG00000010980	ENSMGAG00000010982 #29	ENSMGAG00000022627 #26	ENSMGAG00000010948 #25	ELAVL4 (ENSMGAG00000010928) #22	ENSMGAG00000019230 #20	ENSMGAG00000010874 #21	ENSMGAG00000010855 #19	ENSMGAG00000010829 #18	ENSMGAG00000021374 #19	TRABD2B (ENSMGAG00000017913) #15	ENSMGAG00000010792	ENSMGAG00000010814	ENSMGAG00000010795 #11	ENSMGAG00000010823 #10	ENSMGAG00000010752	ENSMGAG00000010784	ENSMGAG00000010747	ENSMGAG00000010732	ENSMGAG00000010730
Chicken	MODERN SPECIES	37	ATPAF1 (ENSGALG00010022867)	EFCAB14 (ENSGALG00010022874)	CYP4B7 (ENSGALG00010022917)	PDZK1IP1 (ENSGALG00010022948) #9	TAL1 (ENSGALG00010022991) #10	STIL (ENSGALG00010024669) #11	CMPK1 (ENSGALG00010024686)	ENSGALG00010026936	TRABD2B (ENSGALG00010024695) #15	SLC5A9 (ENSGALG00010024728) #18	SPATA6 (ENSGALG00010024758) #19	ENSGALG00010024768	AGBL4 (ENSGALG00010027088) #20	BEND5 (ENSGALG00010024659) #21	ENSGALG00010024774	ELAVL4 (ENSGALG00010022760) #22	DMRTA2 (ENSGALG00010022784) #24	FAF1 (ENSGALG00010024514) #25	CDKN2C (ENSGALG00010024533) #26	RNF11 (ENSGALG00010024551)	TTC39A (ENSGALG00010024588) #29	EPS15 (ENSGALG00010024596) #30	ENSGALG00010024599 #31	NRDC (ENSGALG00010024623) #32	OSBPL9 (ENSGALG00010027084) #31	RAB3B (ENSGALG00010024642) #33	TXNDC12 (ENSGALG00010024836) #34	BTF3L4 (ENSGALG00010024840) #35	ZFYVE9 (ENSGALG00010024842) #37	ORC1 (ENSGALG00010024861)	PRPF38A (ENSGALG00010024877)
Anatidae	ANCESTRAL SPECIES	5	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00990000204056	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A
Duck	MODERN SPECIES	26	ATPAF1 (ENSAPLG00000009308)	EFCAB14 (ENSAPLG00000026113)	ENSAPLG00000009571	STIL (ENSAPLG00000010138) #11	ENSAPLG00000029939	ENSAPLG00000028912	TRABD2B (ENSAPLG00000007124) #15	ENSAPLG00000022301	SLC5A9 (ENSAPLG00000007144) #18	ENSAPLG00000020726	SPATA6 (ENSAPLG00000007793) #19	ENSAPLG00000007966 #20	BEND5 (ENSAPLG00000008052) #21	ENSAPLG00000018496	ENSAPLG00000023647 #20	ELAVL4 (ENSAPLG00000030449) #22	DMRTA2 (ENSAPLG00000029740) #24	FAF1 (ENSAPLG00000002930) #25	CDKN2C (ENSAPLG00000027339) #26	RNF11 (ENSAPLG00000022113) #28	TTC39A (ENSAPLG00000003729) #29	EPS15 (ENSAPLG00000004292) #30	OSBPL9 (ENSAPLG00000001003) #31	ENSAPLG00000002870 #32	RAB3B (ENSAPLG00000004148) #33	TXNDC12 (ENSAPLG00000022816) #34	BTF3L4 (ENSAPLG00000009079) #35	ZFYVE9 (ENSAPLG00000004605) #37	ORC1 (ENSAPLG00000005106)	PRPF38A (ENSAPLG00000005827)	TUT4 (ENSAPLG00000006345)
Pink-footed goose	MODERN SPECIES	1	ATPAF1 (ENSABRG00000016766)	EFCAB14 (ENSABRG00000016757)	ENSABRG00000016721	ENSABRG00000016720	PDZK1IP1 (ENSABRG00000016718) #9	TAL1 (ENSABRG00000016716) #10	STIL (ENSABRG00000016714) #11	ENSABRG00000016710	ENSABRG00000016705	TRABD2B (ENSABRG00000016692) #15	SLC5A9 (ENSABRG00000015750) #18	SPATA6 (ENSABRG00000015644) #19	ENSABRG00000015638 #20	BEND5 (ENSABRG00000015631) #21	AGBL4 (ENSABRG00000015624) #20	ELAVL4 (ENSABRG00000015613) #22	DMRTA2 (ENSABRG00000015596) #24	FAF1 (ENSABRG00000015320) #25	CDKN2C (ENSABRG00000015292) #26	RNF11 (ENSABRG00000015288) #28	TTC39A (ENSABRG00000015248) #29	EPS15 (ENSABRG00000014091) #30	OSBPL9 (ENSABRG00000011975) #31	ENSABRG00000008367 #32	RAB3B (ENSABRG00000008096) #33	TXNDC12 (ENSABRG00000008071) #34	BTF3L4 (ENSABRG00000008061) #35	ZFYVE9 (ENSABRG00000007459) #37	CC2D1B (ENSABRG00000007260)	ORC1 (ENSABRG00000007186)	PRPF38A (ENSABRG00000007179)
African ostrich	MODERN SPECIES	556																ELAVL4 (ENSSCUG00000007535) #22
Australian saltwater crocodile	MODERN SPECIES	28	ATPAF1 (ENSCPRG00005017958)	ENSCPRG00005017961	EFCAB14 (ENSCPRG00005017964)	ENSCPRG00005017973	ENSCPRG00005017986	ENSCPRG00005018022	TAL1 (ENSCPRG00005018024) #10	STIL (ENSCPRG00005018027) #11	ENSCPRG00005018033	TRABD2B (ENSCPRG00005018038) #15	SLC5A9 (ENSCPRG00005018045) #18	SPATA6 (ENSCPRG00005018049) #19	ENSCPRG00005018057 #20	BEND5 (ENSCPRG00005018063) #21	ENSCPRG00005018070 #20	ELAVL4 (ENSCPRG00005018078) #22	FAF1 (ENSCPRG00005018094) #25	CDKN2C (ENSCPRG00005018099) #26	ENSCPRG00005018102	TTC39A (ENSCPRG00005000251) #29	EPS15 (ENSCPRG00005000597) #30	OSBPL9 (ENSCPRG00005000700) #31	ENSCPRG00005000992 #32	RAB3B (ENSCPRG00005002515) #33	TXNDC12 (ENSCPRG00005002525) #34	BTF3L4 (ENSCPRG00005002529) #35	ZFYVE9 (ENSCPRG00005002533) #37	CC2D1B (ENSCPRG00005002551)	ORC1 (ENSCPRG00005002601)	PRPF38A (ENSCPRG00005002609)	TUT4 (ENSCPRG00005002633)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000161527.c.f	ENSGT00940000161527.d.b.b	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000161273 #15	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000161441	ENSGT00940000161527.d.b.a	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Emydidae	ANCESTRAL SPECIES	22	ENSGT00390000011196	ENSGT00940000161527.c.e	ENSGT00940000161527.c.f	ENSGT00940000161441	ENSGT00940000161527.d.b.a	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B	ENSGT00730000111085.A
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	46										ENSTMTG00000008578	ENSTMTG00000008099 #18	ENSTMTG00000008048 #19	ENSTMTG00000008028 #20	ENSTMTG00000007936 #21	ENSTMTG00000007916 #20	ENSTMTG00000007902 #22	ENSTMTG00000007898 #22	ENSTMTG00000007877 #24	ENSTMTG00000007057 #25	ENSTMTG00000007006 #26
Three-toed box turtle	MODERN SPECIES	46									ENSTMTG00000008578	ENSTMTG00000008099 #18	ENSTMTG00000008048 #19	ENSTMTG00000008028 #20	ENSTMTG00000007936 #21	ENSTMTG00000007916 #20	ENSTMTG00000007902 #22	ENSTMTG00000007898 #22	ENSTMTG00000007877 #24	ENSTMTG00000007057 #25	ENSTMTG00000007006 #26
Three-toed box turtle	MODERN SPECIES	45									ENSTMTG00000006961	ENSTMTG00000006952	ENSTMTG00000006516 #18	ENSTMTG00000006448 #19	ENSTMTG00000006433 #20	ENSTMTG00000006380 #21	ENSTMTG00000006344 #20	ENSTMTG00000005832 #22	ENSTMTG00000005788 #24	ENSTMTG00000004990 #25	ENSTMTG00000004899 #26
painted turtle	MODERN SPECIES	698	ENSCPBG00000009792	ENSCPBG00000009909	PDZK1IP1 (ENSCPBG00000009955) #9	TAL1 (ENSCPBG00000009956) #10	STIL (ENSCPBG00000009963) #11	ENSCPBG00000009969	ENSCPBG00000009970	ENSCPBG00000009977	ENSCPBG00000009979	SLC5A9 (ENSCPBG00000009981) #18	SPATA6 (ENSCPBG00000009991) #19	ENSCPBG00000009998 #20	BEND5 (ENSCPBG00000010006) #21	ENSCPBG00000010011 #20	ENSCPBG00000010014	ELAVL4 (ENSCPBG00000010017) #22	DMRTA2 (ENSCPBG00000010018) #24	FAF1 (ENSCPBG00000010024) #25	CDKN2C (ENSCPBG00000010037) #26	RNF11 (ENSCPBG00000010042) #28	TTC39A (ENSCPBG00000010051) #29	EPS15 (ENSCPBG00000010066) #30	OSBPL9 (ENSCPBG00000010097) #31	ENSCPBG00000010301 #32	RAB3B (ENSCPBG00000012333) #33
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00940000161527.c.f	ENSGT00940000161441	ENSGT00940000161527.d.b.a	ENSGT00940000161527.d.a	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000155042.b.c #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.d #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000154690 #31	ENSGT00940000155026.k.a.a #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Abingdon island giant tortoise	MODERN SPECIES	2513															ENSCABG00000003804 #20	ELAVL4 (ENSCABG00000003809) #22
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005019451	ENSGEVG00005019318	ENSGEVG00005019175	ENSGEVG00005018800	PDZK1IP1 (ENSGEVG00005018742) #9	TAL1 (ENSGEVG00005018730) #10	STIL (ENSGEVG00005018571) #11	ENSGEVG00005018548	ENSGEVG00005018529	FOXD2 (ENSGEVG00005018509) #14	SLC5A9 (ENSGEVG00005018452) #18	SPATA6 (ENSGEVG00005018413) #19	ENSGEVG00005018360 #20	BEND5 (ENSGEVG00005018332) #21	ENSGEVG00005018302 #20	ELAVL4 (ENSGEVG00005017971) #22	DMRTA2 (ENSGEVG00005017905) #24	FAF1 (ENSGEVG00005017857) #25	CDKN2C (ENSGEVG00005017834) #26	RNF11 (ENSGEVG00005017825) #28	TTC39A (ENSGEVG00005016642) #29	EPS15 (ENSGEVG00005016380) #30	OSBPL9 (ENSGEVG00005016164) #31	ENSGEVG00005015994 #32	RAB3B (ENSGEVG00005015931) #33	TXNDC12 (ENSGEVG00005015860) #34	BTF3L4 (ENSGEVG00005015799) #35	ZFYVE9 (ENSGEVG00005015772) #37	CC2D1B (ENSGEVG00005015662)	ORC1 (ENSGEVG00005015593)	PRPF38A (ENSGEVG00005015566)
Chinese turtle	MODERN SPECIES	1294	ENSPSIG00000012049	ENSPSIG00000010643	TAL1 (ENSPSIG00000010614) #10	STIL (ENSPSIG00000010417) #11	ENSPSIG00000010159	ENSPSIG00000010073	ENSPSIG00000010057 #15	ENSPSIG00000000303	ENSPSIG00000000298	SLC5A9 (ENSPSIG00000009335) #18	SPATA6 (ENSPSIG00000009039) #19	ENSPSIG00000008990 #20	ENSPSIG00000000294	BEND5 (ENSPSIG00000008975) #21	ENSPSIG00000000289	ELAVL4 (ENSPSIG00000008545) #22	ENSPSIG00000008525	FAF1 (ENSPSIG00000006306) #25	CDKN2C (ENSPSIG00000006283) #26	RNF11 (ENSPSIG00000006280) #28	TTC39A (ENSPSIG00000017765) #29	EPS15 (ENSPSIG00000015754) #30	OSBPL9 (ENSPSIG00000014233) #31	ENSPSIG00000009906 #32	ENSPSIG00000009351 #33	ENSPSIG00000000608 #33	TXNDC12 (ENSPSIG00000009183) #34	BTF3L4 (ENSPSIG00000007609) #35	ZFYVE9 (ENSPSIG00000006343) #37	CC2D1B (ENSPSIG00000005729)	PRPF38A (ENSPSIG00000017487)
Anura	ANCESTRAL SPECIES	6	ENSGT00940000161527.a.b.a	ENSGT00940000161527.b	ENSGT00940000161527.a.b.b	ENSGT00940000154660.b #9	ENSGT00940000159889 #10	ENSGT00390000007310 #11	ENSGT00940000160589 #12	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a #14	ENSGT00940000161273 #15	ENSGT00940000157546 #18	ENSGT00530000063821.b.a #19	ENSGT00940000175969	ENSGT00390000001724 #21	ENSGT00940000155042.b #20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.b.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33	ENSGT00530000063273.a #34	ENSGT00940000154296 #35	ENSGT00940000154290.a #37	ENSGT00390000009595.a	ENSGT00530000063498.B
Frog	MODERN SPECIES	4	pdzk1ip1 (ENSXETG00000032460) #9	tal1 (ENSXETG00000041260) #10	stil (ENSXETG00000016343) #11	cmpk1 (ENSXETG00000043840) #12	foxe3 (ENSXETG00000016339)	foxd2 (ENSXETG00000047367) #14	ENSXETG00000037072	trabd2b (ENSXETG00000035683) #15	slc5a9 (ENSXETG00000006935) #18	ENSXETG00000042521	ENSXETG00000044812	ENSXETG00000042689 #19	ENSXETG00000037622	agbl4 (ENSXETG00000008687) #21	ENSXETG00000035079	ppp1r26 (ENSXETG00000008680) #22	dmrta2 (ENSXETG00000002846) #24	faf1 (ENSXETG00000002841) #25	cdkn2c (ENSXETG00000033220) #26	rnf11 (ENSXETG00000002837) #28	ttc39a (ENSXETG00000002835) #29	eps15 (ENSXETG00000002833) #30	actr3 (ENSXETG00000002832)	osbpl9 (ENSXETG00000002831) #31	nrdc (ENSXETG00000008054) #32	rab3b (ENSXETG00000008055) #33	txndc12 (ENSXETG00000039370) #34	btf3l4 (ENSXETG00000008056) #35	zfyve9 (ENSXETG00000008057) #37	ENSXETG00000048299	cc2d1b (ENSXETG00000008058)
Leishan spiny toad	MODERN SPECIES	11	FOXD2 (ENSLLEG00000028734) #14	TRABD2B (ENSLLEG00000028753) #15	ENSLLEG00000028776	ENSLLEG00000028790 #18	ENSLLEG00000028872 #18	ENSLLEG00000029040	SPATA6 (ENSLLEG00000029043) #19	ENSLLEG00000029090	ENSLLEG00000029098	BEND5 (ENSLLEG00000029117) #21	ENSLLEG00000029132	ENSLLEG00000029143	ENSLLEG00000029154	ENSLLEG00000029162	ENSLLEG00000029175 #20	ELAVL4 (ENSLLEG00000029217) #22	DMRTA2 (ENSLLEG00000029483) #24	ENSLLEG00000029835	CDKN2C (ENSLLEG00000029841) #26	RNF11 (ENSLLEG00000029850) #28	TTC39A (ENSLLEG00000029871) #29	EPS15 (ENSLLEG00000029949) #30	ENSLLEG00000030037	OSBPL9 (ENSLLEG00000030207) #31	NRDC (ENSLLEG00000030530) #32	RAB3B (ENSLLEG00000030594) #33	TXNDC12 (ENSLLEG00000030607) #34	BTF3L4 (ENSLLEG00000030622) #35	ZFYVE9 (ENSLLEG00000030631) #37	CC2D1B (ENSLLEG00000030657)	ORC1 (ENSLLEG00000030678)
Coelacanth	MODERN SPECIES	1206																ELAVL4 (ENSLACG00000008316) #22	ENSLACG00000009510	ENSLACG00000010633	DMRTA2 (ENSLACG00000012046) #24	ENSLACG00000013090
Actinopterygii	ANCESTRAL SPECIES	189				ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00940000157668	ENSGT00940000155136	ENSGT01040000244250	ENSGT00940000159889.b.b #10	ENSGT00390000007310 #11	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988 #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.a.a	ENSGT00940000154690 #31	ENSGT00940000155026 #32	ENSGT00940000159943 #33
Neopterygii	ANCESTRAL SPECIES	222							ENSGT00510000048142	ENSGT00510000047658	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00940000155042.b #20	ENSGT00390000001724 #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.b #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751 #30	ENSGT00950000182915.b.b.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	140	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.b #28	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130
Osteoglossiformes	ANCESTRAL SPECIES	2	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.m	ENSGT00940000154130.a.a.b.i	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.b #28	ENSGT00950000182917.a.b.a.f #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Asian bonytongue	MODERN SPECIES	24	srsf11 (ENSSFOG00015027370)	lrrc40 (ENSSFOG00015014904)	LRRC7 (ENSSFOG00015014990)	depdc1a (ENSSFOG00015015357)	rpe65b (ENSSFOG00015015412)	si:ch211-198n5.11 (ENSSFOG00015015467)	fnbp1l (ENSSFOG00015015513)	bcar3 (ENSSFOG00015015564)	paox1 (ENSSFOG00015015650)	slc5a9 (ENSSFOG00015015681) #18	gclm (ENSSFOG00015015714)	dnttip2 (ENSSFOG00015015734)	spata6 (ENSSFOG00015027065) ##19	bend5 (ENSSFOG00015015785) #21	AGBL4 (ENSSFOG00015015795) ##20	elavl4 (ENSSFOG00015015838) #22	dmrta2 (ENSSFOG00015015895) #24	faf1 (ENSSFOG00015015918) #25	cdkn2c (ENSSFOG00015025573) #26	RNF11 (ENSSFOG00015029801) #28	EPS15 (ENSSFOG00015016011) #30	calr (ENSSFOG00015016048)	tor3a (ENSSFOG00015027062)	osbpl9 (ENSSFOG00015016204) #31	ENSSFOG00015024564	abl2 (ENSSFOG00015016337)	soat1 (ENSSFOG00015016406)	CACNA1E (ENSSFOG00015016440)	CEP350 (ENSSFOG00015016700)	qsox1 (ENSSFOG00015017013)	lhx4 (ENSSFOG00015017224)
P. kingsleyae	MODERN SPECIES	187					fnbp1l (ENSPKIG00000006627)	bcar3 (ENSPKIG00000006682)	ENSPKIG00000006723	paox1 (ENSPKIG00000006736)	zgc:171480 (ENSPKIG00000006753)	slc5a9 (ENSPKIG00000006772) #18	gclm (ENSPKIG00000006800)	ENSPKIG00000006816	spata6 (ENSPKIG00000006841) ##19	bend5 (ENSPKIG00000006874) #21	agbl4 (ENSPKIG00000006913) ##20	elavl4 (ENSPKIG00000006999) #22	dmrta2 (ENSPKIG00000007101) #24	faf1 (ENSPKIG00000007114) #25	cdkn2c (ENSPKIG00000007146) #26	RNF11 (ENSPKIG00000007154) #28	TTC39A (ENSPKIG00000007193) #29	ENSPKIG00000007277 #30	calr (ENSPKIG00000007335)	tor3a (ENSPKIG00000007356)	osbpl9 (ENSPKIG00000007417) #31	abl2 (ENSPKIG00000007546)	soat1 (ENSPKIG00000007623)
Clupeocephala	ANCESTRAL SPECIES	103	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Euteleosteomorpha	ANCESTRAL SPECIES	157	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Protacanthopterygii	ANCESTRAL SPECIES	104	ENSGT00940000156968.p	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	115	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546 #18	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a.f ##20	ENSGT00390000001724.l.b.b #21	ENSGT00940000157399.a #22	ENSGT00940000161649.f #24	ENSGT00940000154831.h.a #25	ENSGT00940000160194.l #26	ENSGT00730000110988.wb.a.c #28	ENSGT00950000182917.a.b.a.j #29	ENSGT00940000155751.a.c #30	ENSGT00950000182915.b.b.a.a.cb.b	ENSGT00950000182888.a.a.b.f	ENSGT00940000154690.d.a #31	ENSGT00940000153838.b.e	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.b	ENSGT00940000155130.c	ENSGT00940000159504.r
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546 #18	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a ##19	ENSGT00390000001724.l.a.b #21	ENSGT00940000155042.a.a.f ##20	ENSGT00390000001724.l.b.b #21	ENSGT00940000157399.a #22	ENSGT00940000161649.f #24	ENSGT00940000154831.h.a #25	ENSGT00940000160194.l #26	ENSGT00730000110988.wb.a.c #28	ENSGT00950000182917.a.b.a.j #29	ENSGT00940000155751.a.c #30	ENSGT00950000182915.b.b.a.a.cb.b	ENSGT00950000182888.a.a.b.f	ENSGT00940000154690.d.a #31	ENSGT00940000153838.b.e	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.b	ENSGT00940000155130.c	ENSGT00940000159504.r
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000154384	ENSGT00950000183189.a.b.a.k.a	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546 #18	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a ##19	ENSGT00390000001724.l.a.b #21	ENSGT00940000155042.a.a.f ##20	ENSGT00940000157399.a #22	ENSGT00940000161649.f #24	ENSGT00940000154831.h.a #25	ENSGT00940000160194.l #26	ENSGT00730000110988.wb.a.c #28	ENSGT00950000182917.a.b.a.j #29	ENSGT00940000155751.a.c #30	ENSGT00950000182915.b.b.a.a.cb.b	ENSGT00950000182888.a.a.b.f	ENSGT00940000154690.d.a #31	ENSGT00940000153838.b.e	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.b	ENSGT00940000155130.c	ENSGT00940000159504.r
Rainbow trout	MODERN SPECIES	26	LRRC40 (ENSOMYG00000015333)	LRRC7 (ENSOMYG00000015364)	ENSOMYG00000075779	depdc1a (ENSOMYG00000015417)	RPE65 (ENSOMYG00000015503)	si:ch211-198n5.11 (ENSOMYG00000015763)	ENSOMYG00000016042	ENSOMYG00000017088	ENSOMYG00000017216 #18	ENSOMYG00000017784	gclm (ENSOMYG00000017785)	ENSOMYG00000017789	spata6 (ENSOMYG00000017805) ##19	ENSOMYG00000057857	bend5 (ENSOMYG00000017858) #21	elavl4 (ENSOMYG00000017960) #22	ENSOMYG00000067290	dmrta2 (ENSOMYG00000017966) #24	faf1 (ENSOMYG00000018005) #25	cdkn2c (ENSOMYG00000018160) #26	rnf11b (ENSOMYG00000003362) #28	ENSOMYG00000055050	TTC39A (ENSOMYG00000018236) #29	ENSOMYG00000058030	ENSOMYG00000053093	ENSOMYG00000019102 #30	calr (ENSOMYG00000074133)	tor3a (ENSOMYG00000019381)	osbpl9 (ENSOMYG00000019613) #31	ENSOMYG00000076709	abl2 (ENSOMYG00000020846)
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000154384	ENSGT00950000183189.a.b.a.k.a	ENSGT00940000156968.o	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000157546 #18	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a ##19	ENSGT00390000001724.l.a.b #21	ENSGT00940000155042.a.a.f ##20	ENSGT00940000157399.a #22	ENSGT00940000161649.f #24	ENSGT00940000154831.h.a #25	ENSGT00940000160194.l #26	ENSGT00730000110988.wb.a.c #28	ENSGT00950000182917.a.b.a.j #29	ENSGT00940000155751.a.c #30	ENSGT00950000182915.b.b.a.a.cb.b	ENSGT00950000182888.a.a.b.f	ENSGT00940000154690.d.a #31	ENSGT00940000153838.b.e	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.b	ENSGT00940000155130.c	ENSGT00940000159504.r
Coho salmon	MODERN SPECIES	4	lrrc40 (ENSOKIG00005033596)	ENSOKIG00005033541	LRRC7 (ENSOKIG00005033328)	depdc1a (ENSOKIG00005033179)	RPE65 (ENSOKIG00005032666)	si:ch211-198n5.11 (ENSOKIG00005032544)	FNBP1L (ENSOKIG00005031481)	bcar3 (ENSOKIG00005031321)	ENSOKIG00005031306	slc5a9 (ENSOKIG00005031041) #18	gclm (ENSOKIG00005030983)	ENSOKIG00005030940	spata6 (ENSOKIG00005030930) ##19	ENSOKIG00005030924	AGBL4 (ENSOKIG00005030839) ##20	elavl4 (ENSOKIG00005030733) #22	dmrta2 (ENSOKIG00005030708) #24	faf1 (ENSOKIG00005030063) #25	cdkn2c (ENSOKIG00005030007) #26	rnf11b (ENSOKIG00005029989) #28	TTC39A (ENSOKIG00005029558) #29	ENSOKIG00005029304 #30	calr (ENSOKIG00005029200)	tor3a (ENSOKIG00005029178)	osbpl9 (ENSOKIG00005027619) #31	abl2 (ENSOKIG00005027328)	soat1 (ENSOKIG00005027245)	ENSOKIG00005027225	CACNA1E (ENSOKIG00005021353)	CEP350 (ENSOKIG00005020789)	lhx4 (ENSOKIG00005020752)
Chinook salmon	MODERN SPECIES	29	ell (ENSOTSG00005031283)	fkbp8 (ENSOTSG00005031304)	ssbp4 (ENSOTSG00005031318)	ENSOTSG00005031319	depdc1a (ENSOTSG00005031320)	RPE65 (ENSOTSG00005031467)	si:ch211-198n5.11 (ENSOTSG00005032130)	fnbp1l (ENSOTSG00005032192)	bcar3 (ENSOTSG00005032428)	slc5a9 (ENSOTSG00005032429) #18	gclm (ENSOTSG00005032760)	ENSOTSG00005032763	spata6 (ENSOTSG00005032767) ##19	AGBL4 (ENSOTSG00005032773) ##20	bend5 (ENSOTSG00005032775) #21	elavl4 (ENSOTSG00005032776) #22	ENSOTSG00005032921	GPR61 (ENSOTSG00005032922)	AMIGO1 (ENSOTSG00005032924)	ENSOTSG00005032925	sort1b (ENSOTSG00005032930)	ENSOTSG00005032933	ENSOTSG00005032934	ahcyl1 (ENSOTSG00005032935)	hspa1b (ENSOTSG00005032936)	ENSOTSG00005032940	dmrta2 (ENSOTSG00005032942) #24	faf1 (ENSOTSG00005032957) #25	cdkn2c (ENSOTSG00005032973) #26	rnf11b (ENSOTSG00005032987) #28	TTC39A (ENSOTSG00005000312) #29
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000154384	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546 #18	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a ##19	ENSGT00390000001724.l.b.b #21	ENSGT00940000157399.a #22	ENSGT00940000161649.f #24	ENSGT00940000154831.h.a #25	ENSGT00940000160194.l #26	ENSGT00730000110988.wb.a.c #28	ENSGT00950000182917.a.b.a.j #29	ENSGT00940000155751.a.c #30	ENSGT00950000182915.b.b.a.a.cb.b	ENSGT00950000182888.a.a.b.f	ENSGT00940000154690.d.a #31	ENSGT00940000153838.b.e	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.b	ENSGT00940000155130.c	ENSGT00940000159504.r
Atlantic salmon	MODERN SPECIES	1	DEPDC1 (ENSSSAG00000061391)	ENSSSAG00000062538	RPE65 (ENSSSAG00000112197)	fnbp1l (ENSSSAG00000062755)	bcar3 (ENSSSAG00000063319)	zgc:171480 (ENSSSAG00000063345)	slc5a9 (ENSSSAG00000063359) #18	gsh0 (ENSSSAG00000063809)	ENSSSAG00000087728	ENSSSAG00000063813	spata6 (ENSSSAG00000106644) ##19	AGBL4 (ENSSSAG00000106741) ##20	ENSSSAG00000090996	agbl4 (ENSSSAG00000063825) ##20	ENSSSAG00000085418	elavl4 (ENSSSAG00000063874) #22	dmrta2 (ENSSSAG00000120235) #24	faf1 (ENSSSAG00000065255) #25	cdkn2c (ENSSSAG00000093543) #26	rnf11b (ENSSSAG00000066116) #28	TTC39A (ENSSSAG00000066137) #29	ENSSSAG00000066261 #30	calr (ENSSSAG00000066760)	ENSSSAG00000099421	tor3a (ENSSSAG00000066781)	osbpl9 (ENSSSAG00000066850) #31	abl2 (ENSSSAG00000069466)	ENSSSAG00000103089	soat1 (ENSSSAG00000069576)	ENSSSAG00000102755	ENSSSAG00000069674
River trout	MODERN SPECIES	14	lrrc40 (ENSSTUG00000039866)	ENSSTUG00000039939	ENSSTUG00000039945	LRRC7 (ENSSTUG00000040027)	depdc1a (ENSSTUG00000040140)	RPE65 (ENSSTUG00000040173)	si:ch211-198n5.11 (ENSSTUG00000040753)	fnbp1l (ENSSTUG00000040947)	bcar3 (ENSSTUG00000041017)	zgc:171480 (ENSSTUG00000041056)	slc5a9 (ENSSTUG00000041092) #18	gclm (ENSSTUG00000041215)	ENSSTUG00000041234	spata6 (ENSSTUG00000041260) ##19	bend5 (ENSSTUG00000041354) #21	elavl4 (ENSSTUG00000041687) #22	dmrta2 (ENSSTUG00000043322) #24	faf1 (ENSSTUG00000043360) #25	cdkn2c (ENSSTUG00000044064) #26	rnf11b (ENSSTUG00000044067) #28	TTC39A (ENSSTUG00000044079) #29	ENSSTUG00000044323 #30	calr (ENSSTUG00000046005)	tor3a (ENSSTUG00000046082)	osbpl9 (ENSSTUG00000046142) #31	abl2 (ENSSTUG00000046473)	soat1 (ENSSTUG00000046529)	ENSSTUG00000046857	ENSSTUG00000047365	CEP350 (ENSSTUG00000047376)	qsox1 (ENSSTUG00000047496)
Huchen	MODERN SPECIES	289					depdc1a (ENSHHUG00000003263)	RPE65 (ENSHHUG00000003060)	si:ch211-198n5.11 (ENSHHUG00000003048)	fnbp1l (ENSHHUG00000002357)	bcar3 (ENSHHUG00000002347)	ENSHHUG00000002339	slc5a9 (ENSHHUG00000002065) #18	gclm (ENSHHUG00000002032)	spata6 (ENSHHUG00000001982) ##19	bend5 (ENSHHUG00000001976) #21	AGBL4 (ENSHHUG00000001820) ##20	elavl4 (ENSHHUG00000001695) #22	ENSHHUG00000001658	ENSHHUG00000001532	CARTPT (ENSHHUG00000001484)	ENSHHUG00000001481	ENSHHUG00000001474	ENSHHUG00000001469	NRDC (ENSHHUG00000001084) #32	SLITRK3 (ENSHHUG00000001069)
Salmoninae	ANCESTRAL SPECIES	363	ENSGT00950000183189.a.b.a.l	ENSGT00940000160614.j	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a #21	ENSGT00940000155042.a.a.e ##20	ENSGT00390000001724.l.a #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399.b #22	ENSGT00940000161649.e #24	ENSGT00940000154831.h.b #25	ENSGT00940000160194.k #26	ENSGT00730000110988.wb.a.d #28	ENSGT00950000182917.a.b.a.i #29	ENSGT00940000155751.a.d #30	ENSGT00950000182915.b.b.a.a.cb.a	ENSGT00950000182888.a.a.b.e	ENSGT00940000154690.d.b #31	ENSGT00940000153838.b.f
Huchen	MODERN SPECIES	377														bend5 (ENSHHUG00000035089) #21	agbl4 (ENSHHUG00000035054) ##20	elavl4 (ENSHHUG00000034935) #22	ENSHHUG00000034930	dmrta2 (ENSHHUG00000034923) #24	faf1 (ENSHHUG00000034858) #25	cdkn2c (ENSHHUG00000034853) #26	rnf11b (ENSHHUG00000034840) #28	TTC39A (ENSHHUG00000034400) #29	ENSHHUG00000034323 #30	calr3a (ENSHHUG00000034310)	ENSHHUG00000034303
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00950000183189.a.b.a.l	ENSGT00940000160614.j	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a #21	ENSGT00940000155042.a.a.e ##20	ENSGT00390000001724.l.a.a #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399.b #22	ENSGT00940000161649.e #24	ENSGT00940000154831.h.b #25	ENSGT00940000160194.k #26	ENSGT00730000110988.wb.a.d #28	ENSGT00950000182917.a.b.a.i #29	ENSGT00940000155751.a.d #30	ENSGT00950000182915.b.b.a.a.cb.a	ENSGT00950000182888.a.a.b.e	ENSGT00940000154690.d.b #31	ENSGT00940000153838.b.f	ENSGT00940000155601.g.a	ENSGT00940000155130.d	ENSGT00940000159504.q	ENSGT00940000157906.a	ENSGT00940000157458.l
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000160614.j	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a #21	ENSGT00940000157399.b #22	ENSGT00940000161649.e #24	ENSGT00940000154831.h.b #25	ENSGT00940000160194.k #26	ENSGT00730000110988.wb.a.d #28	ENSGT00950000182917.a.b.a.i #29	ENSGT00940000155751.a.d #30	ENSGT00950000182915.b.b.a.a.cb.a	ENSGT00950000182888.a.a.b.e	ENSGT00940000154690.d.b #31	ENSGT00940000153838.b.f	ENSGT00940000155601.g.a	ENSGT00940000155130.d	ENSGT00940000159504.q	ENSGT00940000157906.a	ENSGT00940000157458.l
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000118997	sox2 (ENSSSAG00000088464)	ENSSSAG00000085029	ENSSSAG00000084166	ENSSSAG00000041043	ENSSSAG00000040989	LRRC7 (ENSSSAG00000012965)	DEPDC1 (ENSSSAG00000011177)	RPE65 (ENSSSAG00000008787)	fnbp1l (ENSSSAG00000080709)	bcar3 (ENSSSAG00000080653)	zgc:171480 (ENSSSAG00000080639)	gclm (ENSSSAG00000094075)	dnttip2 (ENSSSAG00000080634)	bend5 (ENSSSAG00000080616) #21	elavl4 (ENSSSAG00000080587) #22	dmrta2 (ENSSSAG00000108883) #24	faf1 (ENSSSAG00000080523) #25	cdkn2c (ENSSSAG00000103621) #26	ENSSSAG00000117935	TTC39A (ENSSSAG00000080465) #29	EPS15 (ENSSSAG00000080308) #30	calr (ENSSSAG00000080203)	tor3a (ENSSSAG00000105817)	osbpl9 (ENSSSAG00000080075) #31	ENSSSAG00000080041	ENSSSAG00000071889	ENSSSAG00000113894	CEP350 (ENSSSAG00000071499)	qsox1 (ENSSSAG00000071434)	lhx4 (ENSSSAG00000087689)
River trout	MODERN SPECIES	33	lrrc40 (ENSSTUG00000020074)	ENSSTUG00000020057	LRRC7 (ENSSTUG00000019742)	depdc1a (ENSSTUG00000019684)	RPE65 (ENSSTUG00000019395)	fnbp1l (ENSSTUG00000019335)	bcar3 (ENSSTUG00000019270)	zgc:171480 (ENSSTUG00000019258)	gclm (ENSSTUG00000019242)	dnttip2 (ENSSTUG00000019225)	bend5 (ENSSTUG00000019218) #21	ENSSTUG00000019215	ENSSTUG00000019213	AGBL4 (ENSSTUG00000019133) ##20	ENSSTUG00000019127	elavl4 (ENSSTUG00000018579) #22	dmrta2 (ENSSTUG00000018551) #24	faf1 (ENSSTUG00000017265) #25	cdkn2c (ENSSTUG00000017218) #26	rnf11b (ENSSTUG00000017202) #28	TTC39A (ENSSTUG00000016118) #29	ENSSTUG00000016025 #30	calr (ENSSTUG00000015944)	tor3a (ENSSTUG00000015915)	osbpl9 (ENSSTUG00000014488) #31	abl2 (ENSSTUG00000014393)	CACNA1E (ENSSTUG00000007576)	CEP350 (ENSSTUG00000007305)	qsox1 (ENSSTUG00000007285)	lhx4 (ENSSTUG00000007258)	acbd6 (ENSSTUG00000007248)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a #21	ENSGT00940000155042.a.a.e ##20	ENSGT00390000001724.l.a.a #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399.b #22	ENSGT00940000161649.e #24	ENSGT00940000154831.h.b #25	ENSGT00940000160194.k #26	ENSGT00730000110988.wb.a.d #28	ENSGT00950000182917.a.b.a.i #29	ENSGT00940000155751.a.d #30	ENSGT00950000182915.b.b.a.a.cb.a	ENSGT00950000182888.a.a.b.e	ENSGT00940000154690.d.b #31	ENSGT00940000153838.b.f	ENSGT00940000155601.g.a	ENSGT00940000155130.d	ENSGT00940000159504.q	ENSGT00940000157906.a	ENSGT00940000157458.l
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00940000155042.a.a.e ##20	ENSGT00390000001724.l.a.a #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399.b #22	ENSGT00940000161649.e #24	ENSGT00940000154831.h.b #25	ENSGT00940000160194.k #26	ENSGT00950000182917.a.b.a.i #29	ENSGT00940000155751.a.d #30	ENSGT00950000182915.b.b.a.a.cb.a	ENSGT00950000182888.a.a.b.e	ENSGT00940000154690.d.b #31	ENSGT00940000153838.b.f	ENSGT00940000155601.g.a	ENSGT00940000155130.d	ENSGT00940000159504.q	ENSGT00940000157906.a	ENSGT00940000157458.l	ENSGT00500000044895.q
Coho salmon	MODERN SPECIES	1	ENSOKIG00005045700	LRRC40 (ENSOKIG00005045734)	LRRC7 (ENSOKIG00005045795)	DEPDC1 (ENSOKIG00005045926)	ENSOKIG00005045956	RPE65 (ENSOKIG00005045996)	fnbp1l (ENSOKIG00005046644)	bcar3 (ENSOKIG00005046712)	ENSOKIG00005046725	ENSOKIG00005046729	gclm (ENSOKIG00005046734)	dnttip2 (ENSOKIG00005046742)	AGBL4 (ENSOKIG00005046746) ##20	bend5 (ENSOKIG00005046749) #21	agbl4 (ENSOKIG00005046754) ##20	elavl4 (ENSOKIG00005046766) #22	dmrta2 (ENSOKIG00005046825) #24	faf1 (ENSOKIG00005046866) #25	cdkn2c (ENSOKIG00005047369) #26	ENSOKIG00005001887	ENSOKIG00005001904	TTC39A (ENSOKIG00005002222) #29	EPS15 (ENSOKIG00005003501) #30	tor3a (ENSOKIG00005003737)	osbpl9 (ENSOKIG00005003770) #31	ABL2 (ENSOKIG00005003896)	ENSOKIG00005003919	CACNA1E (ENSOKIG00005004428)	CEP350 (ENSOKIG00005012112)	qsox1 (ENSOKIG00005012135)	lhx4 (ENSOKIG00005012141)
Chinook salmon	MODERN SPECIES		ENSOTSG00005023138	LRRC24 (ENSOTSG00005023139)	ENSOTSG00005023140	ttc14 (ENSOTSG00005023142)	fxr1 (ENSOTSG00005023147)	lrrc40 (ENSOTSG00005023153)	LRRC7 (ENSOTSG00005023156)	bcar3 (ENSOTSG00005023225)	zgc:171480 (ENSOTSG00005023796)	gclm (ENSOTSG00005023797)	dnttip2 (ENSOTSG00005023798)	AGBL4 (ENSOTSG00005023799) ##20	bend5 (ENSOTSG00005023801) #21	ENSOTSG00005023802	agbl4 (ENSOTSG00005023803) ##20	elavl4 (ENSOTSG00005023804) #22	dmrta2 (ENSOTSG00005024723) #24	faf1 (ENSOTSG00005024724) #25	cdkn2c (ENSOTSG00005025367) #26	ENSOTSG00005025368	TTC39A (ENSOTSG00005025385) #29	EPS15 (ENSOTSG00005026959) #30	calr (ENSOTSG00005026964)	tor3a (ENSOTSG00005026965)	osbpl9 (ENSOTSG00005026982) #31	abl2 (ENSOTSG00005027012)	CACNA1E (ENSOTSG00005002255)	qsox1 (ENSOTSG00005021308)	lhx4 (ENSOTSG00005021309)	acbd6 (ENSOTSG00005021310)	xpr1a (ENSOTSG00005021312)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000025794	ENSOMYG00000025802	ENSOMYG00000025899	ENSOMYG00000026170	ENSOMYG00000057336	LRRC7 (ENSOMYG00000026410)	ENSOMYG00000055547	ENSOMYG00000026674	RPE65 (ENSOMYG00000027040)	fnbp1l (ENSOMYG00000027907)	ENSOMYG00000028020	zgc:171480 (ENSOMYG00000028076)	dnttip2 (ENSOMYG00000028177)	bend5 (ENSOMYG00000002676) #21	ENSOMYG00000055718	elavl4 (ENSOMYG00000002966) #22	dmrta2 (ENSOMYG00000003182) #24	faf1 (ENSOMYG00000003274) #25	ENSOMYG00000074743	cdkn2c (ENSOMYG00000003329) #26	ENSOMYG00000069988	rnf11b (ENSOMYG00000050765) #28	TTC39A (ENSOMYG00000003607) #29	ENSOMYG00000004069 #30	calr (ENSOMYG00000004258)	tor3a (ENSOMYG00000053656)	osbpl9 (ENSOMYG00000005418) #31	ENSOMYG00000006334	ENSOMYG00000011294	ENSOMYG00000047973	CEP350 (ENSOMYG00000031754)
Northern pike	MODERN SPECIES	7	ralgps2 (ENSELUG00000007355)	coa7 (ENSELUG00000026445)	zyg11 (ENSELUG00000007446)	echdc2 (ENSELUG00000007531)	ENSELUG00000007543	fnbp1l (ENSELUG00000007590)	bcar3 (ENSELUG00000007678)	zgc:171480 (ENSELUG00000033034)	slc5a9 (ENSELUG00000001089) #18	gclm (ENSELUG00000007757)	dnttip2 (ENSELUG00000007775)	spata6 (ENSELUG00000007831) ##19	bend5 (ENSELUG00000007876) #21	ENSELUG00000030738	AGBL4 (ENSELUG00000007969) ##20	elavl4 (ENSELUG00000008025) #22	dmrta2 (ENSELUG00000008044) #24	faf1 (ENSELUG00000008116) #25	cdkn2c (ENSELUG00000008153) #26	rnf11b (ENSELUG00000008168) #28	TTC39A (ENSELUG00000008202) #29	ENSELUG00000008258 #30	ENSELUG00000008294	tor3a (ENSELUG00000008314)	osbpl9 (ENSELUG00000008491) #31	abl2 (ENSELUG00000008565)	soat1 (ENSELUG00000008616)	CACNA1E (ENSELUG00000008744)	CEP350 (ENSELUG00000001632)	qsox1 (ENSELUG00000008878)	lhx4 (ENSELUG00000008898)
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00500000044869.a.b	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130
Cod	MODERN SPECIES	3	ENSGMOG00000006743	ENSGMOG00000033184	tax1bp3 (ENSGMOG00000006733)	slc1a6 (ENSGMOG00000006717)	ENSGMOG00000006706	pole4 (ENSGMOG00000006699)	ENSGMOG00000034708	ccl25b (ENSGMOG00000006683)	gclm (ENSGMOG00000006675)	dnttip2 (ENSGMOG00000024221)	ENSGMOG00000033349	ENSGMOG00000030429 ##19	AGBL4 (ENSGMOG00000006585) ##20	bend5 (ENSGMOG00000006572) #21	ENSGMOG00000031514	elavl4 (ENSGMOG00000006515) #22	Dmrt5 (ENSGMOG00000023115) #24	faf1 (ENSGMOG00000000980) #25	cdkn2c (ENSGMOG00000007153) #26	ENSGMOG00000007158	rnf11b (ENSGMOG00000036673) #28	TTC39A (ENSGMOG00000014430) #29	ENSGMOG00000014371 #30	calr (ENSGMOG00000014352)	tor3a (ENSGMOG00000014331)	osbpl9 (ENSGMOG00000014271) #31	abl2 (ENSGMOG00000027447)	ENSGMOG00000022686 #31	abl2 (ENSGMOG00000014234)	soat1 (ENSGMOG00000014203)	ENSGMOG00000013994
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00500000044869.a.b	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130
Pinecone sodierfish	MODERN SPECIES	18	RAB8A (ENSMMDG00005000102)	hsh2d (ENSMMDG00005000106)	tax1bp3 (ENSMMDG00005000109)	slc1a6 (ENSMMDG00005000115)	ENSMMDG00005000124	pole4 (ENSMMDG00005000126)	ENSMMDG00005000136	ccl25b (ENSMMDG00005000148)	gclm (ENSMMDG00005000164)	dnttip2 (ENSMMDG00005000183)	ENSMMDG00005000191	AGBL4 (ENSMMDG00005000207) ##20	ENSMMDG00005000216	bend5 (ENSMMDG00005000231) #21	agbl4 (ENSMMDG00005000250) ##20	elavl4 (ENSMMDG00005000337) #22	dmrta2 (ENSMMDG00005000526) #24	faf1 (ENSMMDG00005000613) #25	cdkn2c (ENSMMDG00005001086) #26	RSPH6A (ENSMMDG00005001088)	rnf11b (ENSMMDG00005001090) #28	TTC39A (ENSMMDG00005001107) #29	EPS15 (ENSMMDG00005001570) #30	calr3a (ENSMMDG00005002132)	tor3a (ENSMMDG00005002135)	osbpl9 (ENSMMDG00005002177) #31	abl2 (ENSMMDG00005002362)	soat1 (ENSMMDG00005002816)	CACNA1E (ENSMMDG00005003763)	ENSMMDG00005003828	ENSMMDG00005003833
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Tiger tail seahorse	MODERN SPECIES	469	tax1bp3 (ENSHCOG00000002283)	slc1a6 (ENSHCOG00000002308)	ENSHCOG00000002330	ENSHCOG00000002337	ENSHCOG00000002341	ENSHCOG00000002343	ENSHCOG00000002393	ccl25b (ENSHCOG00000002409)	gclm (ENSHCOG00000002431)	ENSHCOG00000002441	ENSHCOG00000002446	ENSHCOG00000002452	AGBL4 (ENSHCOG00000002471) ##20	bend5 (ENSHCOG00000002481) #21	AGBL4 (ENSHCOG00000002487) ##20	elavl4 (ENSHCOG00000002490) #22	dmrta2 (ENSHCOG00000002508) #24	faf1 (ENSHCOG00000002540) #25	cdkn2c (ENSHCOG00000002570) #26	rnf11b (ENSHCOG00000002580) #28	TTC39A (ENSHCOG00000002597) #29	ENSHCOG00000002636 #30	calr (ENSHCOG00000002655)	tor3a (ENSHCOG00000002679)	osbpl9 (ENSHCOG00000002737) #31	abl2 (ENSHCOG00000002758)	soat1 (ENSHCOG00000002803)	CACNA1E (ENSHCOG00000002852)	CEP350 (ENSHCOG00000002886)	qsox1 (ENSHCOG00000002910)	lhx4 (ENSHCOG00000002923)
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000157246.b	ENSGT00940000173465	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Tetraodon	MODERN SPECIES		ENSTNIG00000015472	ENSTNIG00000015473	tpm4a (ENSTNIG00000000267)	RAB8A (ENSTNIG00000015474)	tax1bp3 (ENSTNIG00000015475)	slc1a6 (ENSTNIG00000015476)	pole4 (ENSTNIG00000015477)	ENSTNIG00000015478	ccl25b (ENSTNIG00000015479)	gclm (ENSTNIG00000015480)	ENSTNIG00000000907	spata6 (ENSTNIG00000015481) ##19	AGBL4 (ENSTNIG00000015482) ##20	bend5 (ENSTNIG00000015483) #21	agbl4 (ENSTNIG00000015484) ##20	elavl4 (ENSTNIG00000015485) #22	dmrta2 (ENSTNIG00000015486) #24	faf1 (ENSTNIG00000015487) #25	cdkn2c (ENSTNIG00000015488) #26	rnf11b (ENSTNIG00000015489) #28	TTC39A (ENSTNIG00000015490) #29	EPS15 (ENSTNIG00000015491) #30	calr (ENSTNIG00000015492)	tor3a (ENSTNIG00000015493)	osbpl9 (ENSTNIG00000015494) #31	abl2 (ENSTNIG00000015495)	soat1 (ENSTNIG00000015496)	ENSTNIG00000015497	CACNA1E (ENSTNIG00000015498)	CEP350 (ENSTNIG00000015499)	qsox1 (ENSTNIG00000015500)
Fugu	MODERN SPECIES	12	ENSTRUG00000025658	tpm4 (ENSTRUG00000001260)	RAB8A (ENSTRUG00000030620)	ENSTRUG00000024430	tax1bp3 (ENSTRUG00000024088)	slc1a6 (ENSTRUG00000000825)	ENSTRUG00000020791	pole4 (ENSTRUG00000000810)	ENSTRUG00000027133	ccl25b (ENSTRUG00000019960)	gclm (ENSTRUG00000000742)	ENSTRUG00000000733	ENSTRUG00000029282 ##19	ENSTRUG00000024029	AGBL4 (ENSTRUG00000021791) ##20	elavl4 (ENSTRUG00000000523) #22	dmrta2 (ENSTRUG00000001824) #24	faf1 (ENSTRUG00000001889) #25	cdkn2c (ENSTRUG00000003038) #26	rnf11b (ENSTRUG00000003193) #28	ENSTRUG00000029989	TTC39A (ENSTRUG00000003347) #29	ENSTRUG00000004191 #30	ENSTRUG00000004597	tor3a (ENSTRUG00000004963)	osbpl9 (ENSTRUG00000005141) #31	abl2 (ENSTRUG00000006070)	soat1 (ENSTRUG00000006606)	ENSTRUG00000032803	CEP350 (ENSTRUG00000009700)	qsox1 (ENSTRUG00000009955)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.h	ENSGT00940000155130	ENSGT00940000159504
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.h	ENSGT00940000155130	ENSGT00940000159504
Perciformes	ANCESTRAL SPECIES	8	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.h	ENSGT00940000155130	ENSGT00940000159504
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g.h	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Channel bull blenny	MODERN SPECIES	18	RAB8A (ENSCGOG00000003530)	ENSCGOG00000003635	ENSCGOG00000003640	tax1bp3 (ENSCGOG00000003645)	slc1a6 (ENSCGOG00000003664)	ENSCGOG00000003871	pole4 (ENSCGOG00000003876)	ENSCGOG00000003888	ccl25b (ENSCGOG00000003899)	gclm (ENSCGOG00000003911)	dnttip2 (ENSCGOG00000003915)	spata6 (ENSCGOG00000003920) ##19	bend5 (ENSCGOG00000003928) #21	ENSCGOG00000003932	agbl4 (ENSCGOG00000003946) ##20	elavl4 (ENSCGOG00000003966) #22	faf1 (ENSCGOG00000004482) #25	cdkn2c (ENSCGOG00000005217) #26	rnf11b (ENSCGOG00000005220) #28	TTC39A (ENSCGOG00000005255) #29	ENSCGOG00000006232 #30	calr (ENSCGOG00000006239)	tor3a (ENSCGOG00000006255)	osbpl9 (ENSCGOG00000000309) #31	abl2 (ENSCGOG00000000874)	soat1 (ENSCGOG00000000881)	CACNA1E (ENSCGOG00000001010)	ENSCGOG00000004692	ENSCGOG00000004693	qsox1 (ENSCGOG00000004695)	acbd6 (ENSCGOG00000004704)
Pike perch	MODERN SPECIES	21	tpm4a (ENSSLUG00000005470)	ENSSLUG00000005872	RAB8A (ENSSLUG00000005879)	ENSSLUG00000005893	tax1bp3 (ENSSLUG00000005909)	slc1a6 (ENSSLUG00000005917)	ENSSLUG00000005933	pole4 (ENSSLUG00000005935)	ENSSLUG00000005944	ccl25b (ENSSLUG00000006015)	gclm (ENSSLUG00000006019)	dnttip2 (ENSSLUG00000006026)	spata6 (ENSSLUG00000006029) ##19	AGBL4 (ENSSLUG00000006045) ##20	bend5 (ENSSLUG00000006120) #21	elavl4 (ENSSLUG00000006161) #22	dmrta2 (ENSSLUG00000006588) #24	faf1 (ENSSLUG00000006755) #25	ENSSLUG00000009474	cdkn2c (ENSSLUG00000009478) #26	rnf11b (ENSSLUG00000009481) #28	TTC39A (ENSSLUG00000009528) #29	ENSSLUG00000011199 #30	calr (ENSSLUG00000011222)	tor3a (ENSSLUG00000011225)	osbpl9 (ENSSLUG00000011264) #31	abl2 (ENSSLUG00000011327)	soat1 (ENSSLUG00000011350)	CACNA1E (ENSSLUG00000011517)	CEP350 (ENSSLUG00000011581)	qsox1 (ENSSLUG00000011610)
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.h	ENSGT00940000155130	ENSGT00940000159504
Lumpfish	MODERN SPECIES	19	ENSCLMG00005013333	RAB8A (ENSCLMG00005013330)	HSH2D (ENSCLMG00005013329)	tax1bp3 (ENSCLMG00005013327)	slc1a6 (ENSCLMG00005013325)	ENSCLMG00005013321	pole4 (ENSCLMG00005013320)	ENSCLMG00005013310	ENSCLMG00005013309	gclm (ENSCLMG00005013308)	dnttip2 (ENSCLMG00005013307)	ENSCLMG00005013305 ##19	AGBL4 (ENSCLMG00005013304) ##20	bend5 (ENSCLMG00005013302) #21	agbl4 (ENSCLMG00005013301) ##20	elavl4 (ENSCLMG00005012884) #22	dmrta2 (ENSCLMG00005012881) #24	faf1 (ENSCLMG00005010132) #25	cdkn2c (ENSCLMG00005010113) #26	rnf11b (ENSCLMG00005010109) #28	TTC39A (ENSCLMG00005006931) #29	ENSCLMG00005006871 #30	calr (ENSCLMG00005006870)	tor3a (ENSCLMG00005006869)	osbpl9 (ENSCLMG00005006776) #31	abl2 (ENSCLMG00005006773)	soat1 (ENSCLMG00005006765)	CACNA1E (ENSCLMG00005006420)	qsox1 (ENSCLMG00005006418)	ENSCLMG00005006416	lhx4 (ENSCLMG00005006415)
Stickleback	MODERN SPECIES	8	ENSGACG00000011305	tpm4a (ENSGACG00000011294)	ENSGACG00000011286	RAB8A (ENSGACG00000011272)	tax1bp3 (ENSGACG00000011267)	slc1a6 (ENSGACG00000011239)	pole4 (ENSGACG00000011233)	ENSGACG00000011228	ccl25b (ENSGACG00000011219)	gclm (ENSGACG00000011182)	ENSGACG00000011180	ENSGACG00000011176	ENSGACG00000011174	AGBL4 (ENSGACG00000011171) ##20	bend5 (ENSGACG00000011164) #21	elavl4 (ENSGACG00000011152) #22	dmrta2 (ENSGACG00000011145) #24	faf1 (ENSGACG00000011131) #25	cdkn2c (ENSGACG00000011122) #26	rnf11b (ENSGACG00000011114) #28	TTC39A (ENSGACG00000011083) #29	ENSGACG00000011065 #30	calr (ENSGACG00000011040)	tor3a (ENSGACG00000011032)	osbpl9 (ENSGACG00000010999) #31	abl2 (ENSGACG00000010969)	soat1 (ENSGACG00000010924)	ENSGACG00000010884	CACNA1E (ENSGACG00000010867)	CEP350 (ENSGACG00000010862)	qsox1 (ENSGACG00000010853)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.h	ENSGT00940000155130	ENSGT00940000159504
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT01030000234965	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g.h	ENSGT00940000155130
European seabass	MODERN SPECIES	17	ENSDLAG00005001680	ENSDLAG00005025987	TPM4 (ENSDLAG00005001319)	ENSDLAG00005030784	HSH2D (ENSDLAG00005025978)	tax1bp3 (ENSDLAG00005025977)	slc1a6 (ENSDLAG00005025971)	ENSDLAG00005025970	pole4 (ENSDLAG00005025969)	ENSDLAG00005025966	ccl25b (ENSDLAG00005025962)	gclm (ENSDLAG00005025960)	dnttip2 (ENSDLAG00005025959)	bend5 (ENSDLAG00005025950) #21	AGBL4 (ENSDLAG00005027588) ##20	elavl4 (ENSDLAG00005025942) #22	dmrta2 (ENSDLAG00005025934) #24	faf1 (ENSDLAG00005025859) #25	cdkn2c (ENSDLAG00005025808) #26	TTC39A (ENSDLAG00005026927) #29	EPS15 (ENSDLAG00005025713) #30	calr (ENSDLAG00005033857)	osbpl9 (ENSDLAG00005025558) #31	abl2 (ENSDLAG00005025519)	soat1 (ENSDLAG00005025506)	ENSDLAG00005032223	ENSDLAG00005028491	ENSDLAG00005020938	ENSDLAG00005020583	psmb12 (ENSDLAG00005031475)	psmb9a (ENSDLAG00005031842)
Large yellow croaker	MODERN SPECIES	489	tpm4a (ENSLCRG00005009562)	ENSLCRG00005009829	ENSLCRG00005009830	rab8a (ENSLCRG00005009831)	ENSLCRG00005009833	tax1bp3 (ENSLCRG00005009834)	slc1a6 (ENSLCRG00005009852)	ENSLCRG00005010462	pole4 (ENSLCRG00005010463)	ENSLCRG00005010466	ccl25b (ENSLCRG00005010468)	gclm (ENSLCRG00005010471)	dnttip2 (ENSLCRG00005010473)	spata6 (ENSLCRG00005010478) ##19	bend5 (ENSLCRG00005010482) #21	elavl4 (ENSLCRG00005010488) #22	dmrta2 (ENSLCRG00005010788) #24	faf1 (ENSLCRG00005010792) #25	cdkn2c (ENSLCRG00005011213) #26	rnf11b (ENSLCRG00005011215) #28	TTC39A (ENSLCRG00005011226) #29	EPS15 (ENSLCRG00005011901) #30	calr3a (ENSLCRG00005011918)	tor3a (ENSLCRG00005011934)	osbpl9 (ENSLCRG00005011989) #31	abl2 (ENSLCRG00005013047)	soat1 (ENSLCRG00005013066)	CACNA1E (ENSLCRG00005013522)	CEP350 (ENSLCRG00005018106)	qsox1 (ENSLCRG00005018110)	lhx4 (ENSLCRG00005018111)
Gilthead seabream	MODERN SPECIES	2	tpm4a (ENSSAUG00010011444)	ENSSAUG00010011470	RAB8A (ENSSAUG00010011473)	HSH2D (ENSSAUG00010011479)	tax1bp3 (ENSSAUG00010011480)	slc1a6 (ENSSAUG00010011483)	ENSSAUG00010011484	pole4 (ENSSAUG00010011485)	ENSSAUG00010011486	ccl25b (ENSSAUG00010011488)	gclm (ENSSAUG00010011489)	dnttip2 (ENSSAUG00010011490)	ENSSAUG00010011491 ##19	AGBL4 (ENSSAUG00010011492) ##20	bend5 (ENSSAUG00010011495) #21	elavl4 (ENSSAUG00010011503) #22	dmrta2 (ENSSAUG00010011554) #24	faf1 (ENSSAUG00010011600) #25	cdkn2c (ENSSAUG00010007778) #26	rnf11b (ENSSAUG00010007781) #28	TTC39A (ENSSAUG00010007824) #29	EPS15 (ENSSAUG00010010806) #30	calr (ENSSAUG00010010816)	tor3a (ENSSAUG00010010817)	osbpl9 (ENSSAUG00010010862) #31	abl2 (ENSSAUG00010013125)	soat1 (ENSSAUG00010013130)	ENSSAUG00010013133	CACNA1E (ENSSAUG00010013277)	CEP350 (ENSSAUG00010025791)	qsox1 (ENSSAUG00010025801)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	45																ELAVL4 (ENSLBEG00000015023) #22	dmrta2 (ENSLBEG00000015054) #24	faf1 (ENSLBEG00000015078) #25	cdkn2c (ENSLBEG00000015258) #26	rnf11b (ENSLBEG00000015512) #28	TTC39A (ENSLBEG00000015541) #29	ENSLBEG00000015634 #30	nr2c2ap (ENSLBEG00000015675)	rfxank (ENSLBEG00000015705)	borcs8 (ENSLBEG00000015745)	ENSLBEG00000015774	mef2b (ENSLBEG00000015785)	tmem161a (ENSLBEG00000015816)	slc25a42 (ENSLBEG00000015887)	MAU2 (ENSLBEG00000015971)	gatad2ab (ENSLBEG00000016024)
Ballan wrasse	MODERN SPECIES	122	ENSLBEG00000006268	RAB8A (ENSLBEG00000006289)	hsh2d (ENSLBEG00000006325)	tax1bp3 (ENSLBEG00000006345)	slc1a6 (ENSLBEG00000006408)	ENSLBEG00000006495	pole4 (ENSLBEG00000006519)	ENSLBEG00000006629	ccl25b (ENSLBEG00000006903)	gclm (ENSLBEG00000006923)	dnttip2 (ENSLBEG00000006945)	ENSLBEG00000006969	ENSLBEG00000006999 ##19	AGBL4 (ENSLBEG00000007028) ##20	bend5 (ENSLBEG00000007054) #21	elavl4 (ENSLBEG00000007096) #22
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Climbing perch	MODERN SPECIES	17	TPM4 (ENSATEG00000027105)	ENSATEG00000005191	ENSATEG00000005445	HSH2D (ENSATEG00000005494)	tax1bp3 (ENSATEG00000026821)	slc1a6 (ENSATEG00000005560)	ENSATEG00000005613	pole4 (ENSATEG00000005624)	ENSATEG00000005664	ENSATEG00000005955	gclm (ENSATEG00000005960)	dnttip2 (ENSATEG00000005987)	ENSATEG00000006008 ##19	AGBL4 (ENSATEG00000006056) ##20	bend5 (ENSATEG00000028519) #21	elavl4 (ENSATEG00000006136) #22	dmrta2 (ENSATEG00000006176) #24	faf1 (ENSATEG00000006191) #25	cdkn2c (ENSATEG00000006231) #26	rnf11b (ENSATEG00000006522) #28	TTC39A (ENSATEG00000006543) #29	ENSATEG00000006616 #30	calr (ENSATEG00000006628)	tor3a (ENSATEG00000006664)	osbpl9 (ENSATEG00000006716) #31	abl2 (ENSATEG00000006816)	soat1 (ENSATEG00000006879)	ENSATEG00000007021	CEP350 (ENSATEG00000007296)	qsox1 (ENSATEG00000007327)	lhx4 (ENSATEG00000007338)
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000006137	RAB8A (ENSBSLG00000006155)	HSH2D (ENSBSLG00000006163)	tax1bp3 (ENSBSLG00000006164)	slc1a6 (ENSBSLG00000006168)	ENSBSLG00000006186	pole4 (ENSBSLG00000006189)	ENSBSLG00000006193	ccl25b (ENSBSLG00000006207)	gclm (ENSBSLG00000006210)	dnttip2 (ENSBSLG00000006215)	ENSBSLG00000006218	ENSBSLG00000006219 ##19	AGBL4 (ENSBSLG00000006221) ##20	bend5 (ENSBSLG00000006226) #21	elavl4 (ENSBSLG00000006228) #22	dmrta2 (ENSBSLG00000006289) #24	faf1 (ENSBSLG00000006832) #25	ENSBSLG00000007629	rnf11b (ENSBSLG00000007635) #28	TTC39A (ENSBSLG00000007641) #29	ENSBSLG00000007708	EPS15 (ENSBSLG00000007929) #30	calr (ENSBSLG00000008939)	tor3a (ENSBSLG00000009065)	osbpl9 (ENSBSLG00000000740) #31	abl2 (ENSBSLG00000000959)	soat1 (ENSBSLG00000000984)	soat1 (ENSBSLG00000001015)	CACNA1E (ENSBSLG00000001891)	CEP350 (ENSBSLG00000002121)
Zig-zag eel	MODERN SPECIES	18	acbd6 (ENSMAMG00000004599)	LHX4 (ENSMAMG00000004577)	ENSMAMG00000026911	qsox1 (ENSMAMG00000004564)	CEP350 (ENSMAMG00000004469)	ENSMAMG00000004395	ENSMAMG00000004351	soat1 (ENSMAMG00000004314)	abl2 (ENSMAMG00000004247)	ENSMAMG00000004165 #31	gclm (ENSMAMG00000004093)	dnttip2 (ENSMAMG00000004072)	ENSMAMG00000024370 ##19	bend5 (ENSMAMG00000004030) #21	AGBL4 (ENSMAMG00000004043) ##20	elavl4 (ENSMAMG00000004000) #22	dmrta2 (ENSMAMG00000003990) #24	faf1 (ENSMAMG00000003904) #25	cdkn2c (ENSMAMG00000003888) #26	rnf11b (ENSMAMG00000028313) #28	TTC39A (ENSMAMG00000003812) #29	ENSMAMG00000003759 #30	ENSMAMG00000003716	tor3a (ENSMAMG00000003702)	ccl25b (ENSMAMG00000003667)	ENSMAMG00000027253	pole4 (ENSMAMG00000003637)	ENSMAMG00000003624	slc1a6 (ENSMAMG00000003572)	tax1bp3 (ENSMAMG00000003535)	HSH2D (ENSMAMG00000003529)
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Seriola	ANCESTRAL SPECIES											ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Yellowtail amberjack	MODERN SPECIES	2484														ENSSLDG00000005379 #21	agbl4 (ENSSLDG00000005345) ##20	elavl4 (ENSSLDG00000005260) #22	dmrta2 (ENSSLDG00000005172) #24	faf1 (ENSSLDG00000005081) #25	cdkn2c (ENSSLDG00000004797) #26	rnf11b (ENSSLDG00000004746) #28	TTC39A (ENSSLDG00000004626) #29	ENSSLDG00000004563 #30	calr (ENSSLDG00000004511)	tor3a (ENSSLDG00000004500)	osbpl9 (ENSSLDG00000004342) #31	abl2 (ENSSLDG00000004225)	soat1 (ENSSLDG00000004004)	ENSSLDG00000003820	ENSSLDG00000003758	CACNA1E (ENSSLDG00000003664)	CEP350 (ENSSLDG00000003589)
Greater amberjack	MODERN SPECIES											ENSSDUG00000000039	ENSSDUG00000000040	ENSSDUG00000000041 ##19	AGBL4 (ENSSDUG00000000042) ##20	bend5 (ENSSDUG00000000043) #21	agbl4 (ENSSDUG00000000044) ##20	elavl4 (ENSSDUG00000000045) #22	dmrta2 (ENSSDUG00000000046) #24	faf1 (ENSSDUG00000000047) #25	cdkn2c (ENSSDUG00000000048) #26	rnf11b (ENSSDUG00000000049) #28	TTC39A (ENSSDUG00000000050) #29	ENSSDUG00000000051 #30	calr (ENSSDUG00000000052)	tor3a (ENSSDUG00000000053)	osbpl9 (ENSSDUG00000000069) #31	abl2 (ENSSDUG00000000270)	soat1 (ENSSDUG00000000324)	ENSSDUG00000000345	CACNA1E (ENSSDUG00000000475)	CEP350 (ENSSDUG00000000509)	qsox1 (ENSSDUG00000000534)
Barramundi perch	MODERN SPECIES	43	tpm4a (ENSLCAG00010027042)	ENSLCAG00010027033	RAB8A (ENSLCAG00010027030)	hsh2d (ENSLCAG00010027025)	tax1bp3 (ENSLCAG00010027024)	slc1a6 (ENSLCAG00010027021)	ENSLCAG00010027020	pole4 (ENSLCAG00010027018)	ENSLCAG00010027016	ccl25b (ENSLCAG00010027015)	dnttip2 (ENSLCAG00010027011)	spata6 (ENSLCAG00010027010) ##19	AGBL4 (ENSLCAG00010027008) ##20	bend5 (ENSLCAG00010027001) #21	agbl4 (ENSLCAG00010026997) ##20	elavl4 (ENSLCAG00010026991) #22	dmrta2 (ENSLCAG00010026986) #24	faf1 (ENSLCAG00010026978) #25	ENSLCAG00010026971	rnf11b (ENSLCAG00010026970) #28	TTC39A (ENSLCAG00010026966) #29	ENSLCAG00010026955 #30	calr (ENSLCAG00010026951)	tor3a (ENSLCAG00010026949)	osbpl9 (ENSLCAG00010026923) #31	abl2 (ENSLCAG00010026920)	soat1 (ENSLCAG00010026917)	CACNA1E (ENSLCAG00010025963)	ENSLCAG00010025365	qsox1 (ENSLCAG00010025349)	lhx4 (ENSLCAG00010025342)
Pleuronectoidei	ANCESTRAL SPECIES	30	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Turbot	MODERN SPECIES	3	ENSSMAG00000007373	tnni3k (ENSSMAG00000007328)	fpgt (ENSSMAG00000007322)	acot11b (ENSSMAG00000007286)	ssbp3b (ENSSMAG00000007250)	dio1 (ENSSMAG00000007191)	dio1 (ENSSMAG00000028072)	ENSSMAG00000007156	ENSSMAG00000007119	ENSSMAG00000007069	ENSSMAG00000007049	dnttip2 (ENSSMAG00000007037)	ENSSMAG00000026136	ENSSMAG00000007019 ##19	AGBL4 (ENSSMAG00000006977) ##20	elavl4 (ENSSMAG00000006881) #22	dmrta2 (ENSSMAG00000006876) #24	faf1 (ENSSMAG00000006842) #25	ENSSMAG00000006636	rnf11b (ENSSMAG00000030524) #28	TTC39A (ENSSMAG00000006580) #29	ENSSMAG00000006542 #30	calr (ENSSMAG00000006479)	tor3a (ENSSMAG00000006472)	osbpl9 (ENSSMAG00000006210) #31	abl2 (ENSSMAG00000006075)	soat1 (ENSSMAG00000006059)	ENSSMAG00000005967	ENSSMAG00000005761	ENSSMAG00000005776	CEP350 (ENSSMAG00000005713)
Tongue sole	MODERN SPECIES	11	ENSCSEG00000020226	sgcb (ENSCSEG00000020217)	spata18 (ENSCSEG00000020214)	usp46 (ENSCSEG00000020211)	rasl11b (ENSCSEG00000020208)	scfd2 (ENSCSEG00000020203)	ENSCSEG00000020199	pole4 (ENSCSEG00000020195)	ENSCSEG00000020189	ccl25b (ENSCSEG00000020188)	gclm (ENSCSEG00000020177)	dnttip2 (ENSCSEG00000020173)	ENSCSEG00000020170	ENSCSEG00000020166 ##19	bend5 (ENSCSEG00000020165) #21	elavl4 (ENSCSEG00000020141) #22	AGBL4 (ENSCSEG00000020112) ##20	dmrta2 (ENSCSEG00000020108) #24	faf1 (ENSCSEG00000020095) #25	cdkn2c (ENSCSEG00000020088) #26	rnf11b (ENSCSEG00000020083) #28	TTC39A (ENSCSEG00000020076) #29	EPS15 (ENSCSEG00000020066) #30	ENSCSEG00000020056	uqcrh (ENSCSEG00000020053)	ENSCSEG00000020045	dmbx1b (ENSCSEG00000020040)	TMEM275 (ENSCSEG00000020039)	mknk1 (ENSCSEG00000020033)	mob3c (ENSCSEG00000020027)	elovl1b (ENSCSEG00000020021)
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b.d	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000166922	ENSGT00910000144271.A.c.b.a.a.f.a.b	ENSGT00910000144271.A.d.a.a	ENSGT00910000144271.A.c.b.a.a.f.a.a.b	ENSGT00940000163484.t.b.b.a.a.b.b	ENSGT00910000144271.A.c.b.a.b.b	ENSGT00910000144271.A.c.b.a.a.e.a.b	ENSGT00910000144271.A.c.b.a.a.e.a.a	ENSGT00910000144271.A.d.a.b	ENSGT00910000144271.A.d.b	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b.d	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000166922	ENSGT00910000144271.A.c.b.a.a.f.a.b	ENSGT00910000144271.A.d.a.a	ENSGT00910000144271.A.c.b.a.a.f.a.a.b	ENSGT00940000163484.t.b.b.a.a.b.b	ENSGT00910000144271.A.c.b.a.b.b	ENSGT00910000144271.A.c.b.a.a.e.a.b	ENSGT00910000144271.A.c.b.a.a.e.a.a	ENSGT00910000144271.A.d.a.b.a	ENSGT00910000144271.A.d.b	ENSGT00910000144271.A.d.a.b.b	ENSGT00940000161721	ENSGT00390000008060
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b.d	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000166922	ENSGT00910000144271.A.c.b.a.a.f.a.b	ENSGT00910000144271.A.d.a.a	ENSGT00910000144271.A.c.b.a.a.f.a.a.b	ENSGT00940000163484.t.b.b.a.a.b.b	ENSGT00910000144271.A.c.b.a.b.b	ENSGT00910000144271.A.c.b.a.a.e.a.b	ENSGT00910000144271.A.c.b.a.a.e.a.a	ENSGT00910000144271.A.d.a.b.a	ENSGT00910000144271.A.d.b	ENSGT00910000144271.A.d.a.b.b	ENSGT00940000161721	ENSGT00390000008060
Burton s mouthbrooder	MODERN SPECIES	307	ENSHBUG00000009311	tpm4a (ENSHBUG00000009380)	ENSHBUG00000009410	RAB8A (ENSHBUG00000009450)	ENSHBUG00000009462	tax1bp3 (ENSHBUG00000009495)	slc1a6 (ENSHBUG00000009529)	ENSHBUG00000009562	pole4 (ENSHBUG00000009585)	ENSHBUG00000009593	ccl25b (ENSHBUG00000009605)	gclm (ENSHBUG00000009613)	dnttip2 (ENSHBUG00000009619)	ENSHBUG00000009632 ##19	bend5 (ENSHBUG00000001068) #21	elavl4 (ENSHBUG00000009691) #22	dmrta2 (ENSHBUG00000009712) #24	faf1 (ENSHBUG00000009768) #25	ENSHBUG00000009785	ENSHBUG00000009803	ENSHBUG00000009827	ENSHBUG00000009842	ENSHBUG00000009850	ENSHBUG00000009858	ENSHBUG00000009863	ENSHBUG00000009889	ENSHBUG00000009898	ENSHBUG00000000940	ENSHBUG00000009983	fgf22 (ENSHBUG00000009990)	POLRMT (ENSHBUG00000010005)
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b.d	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000166922	ENSGT00910000144271.A.c.b.a.a.f.a.b	ENSGT00910000144271.A.d.a.a	ENSGT00910000144271.A.c.b.a.a.f.a.a.b	ENSGT00940000163484.t.b.b.a.a.b.b	ENSGT00910000144271.A.c.b.a.b.b	ENSGT00910000144271.A.c.b.a.a.e.a.b	ENSGT00910000144271.A.c.b.a.a.e.a.a	ENSGT00910000144271.A.d.a.b.a	ENSGT00910000144271.A.d.a.b.b	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c
P. nyererei	MODERN SPECIES	351	ENSPNYG00000021895	RAB8A (ENSPNYG00000021884)	ENSPNYG00000021869	tax1bp3 (ENSPNYG00000021864)	slc1a6 (ENSPNYG00000021853)	ENSPNYG00000021846	pole4 (ENSPNYG00000021834)	ENSPNYG00000021823	ccl25b (ENSPNYG00000021810)	gclm (ENSPNYG00000021799)	dnttip2 (ENSPNYG00000021789)	ENSPNYG00000021775	ENSPNYG00000021761 ##19	bend5 (ENSPNYG00000021752) #21	AGBL4 (ENSPNYG00000021733) ##20	elavl4 (ENSPNYG00000021720) #22	dmrta2 (ENSPNYG00000021701) #24	faf1 (ENSPNYG00000021679) #25	ENSPNYG00000021664	ENSPNYG00000021605	ENSPNYG00000021585	ENSPNYG00000021475	ENSPNYG00000021399	ENSPNYG00000021358	ENSPNYG00000021309	ENSPNYG00000021257	ENSPNYG00000020962	ENSPNYG00000020860	fgf22 (ENSPNYG00000020815)	POLRMT (ENSPNYG00000020790)	HCN2 (ENSPNYG00000020768)
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b.d	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000166922	ENSGT00910000144271.A.c.b.a.a.f.a.b	ENSGT00910000144271.A.d.a.a	ENSGT00910000144271.A.c.b.a.a.f.a.a.b	ENSGT00940000163484.t.b.b.a.a.b.b	ENSGT00910000144271.A.c.b.a.b.b	ENSGT00910000144271.A.c.b.a.a.e.a.b	ENSGT00910000144271.A.c.b.a.a.e.a.a	ENSGT00910000144271.A.d.a.b.a	ENSGT00910000144271.A.d.a.b.b	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c
Zebra mbuna	MODERN SPECIES	59															agbl4 (ENSMZEG00005010718) ##20	elavl4 (ENSMZEG00005010690) #22	dmrta2 (ENSMZEG00005010669) #24	faf1 (ENSMZEG00005010639) #25	ENSMZEG00005010609	ENSMZEG00005010595	ENSMZEG00005010580	ENSMZEG00005010546
Eastern happy	MODERN SPECIES	14	tpm4a (ENSACLG00000002059)	ENSACLG00000002121	RAB8A (ENSACLG00000002134)	ENSACLG00000002169	tax1bp3 (ENSACLG00000002179)	slc1a6 (ENSACLG00000002200)	ENSACLG00000002256	pole4 (ENSACLG00000002609)	ENSACLG00000002638	ccl25b (ENSACLG00000002656)	gclm (ENSACLG00000002661)	dnttip2 (ENSACLG00000002675)	spata6 (ENSACLG00000002687) ##19	bend5 (ENSACLG00000002720) #21	agbl4 (ENSACLG00000002736) ##20	elavl4 (ENSACLG00000002786) #22	dmrta2 (ENSACLG00000002937) #24	faf1 (ENSACLG00000002959) #25	ENSACLG00000003026	ENSACLG00000003037	ENSACLG00000003099	ENSACLG00000003114	ENSACLG00000003147	ENSACLG00000003248	ENSACLG00000003257	ENSACLG00000003266	ENSACLG00000003283	ENSACLG00000003286	ENSACLG00000003293	fgf22 (ENSACLG00000003305)	POLRMT (ENSACLG00000003766)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000002331	tpm4a (ENSONIG00000030984)	ENSONIG00000033767	RAB8A (ENSONIG00000002346)	HSH2D (ENSONIG00000002347)	tax1bp3 (ENSONIG00000031540)	slc1a6 (ENSONIG00000002349)	ENSONIG00000031222	pole4 (ENSONIG00000002352)	ENSONIG00000002353	ccl25b (ENSONIG00000027948)	gclm (ENSONIG00000002354)	dnttip2 (ENSONIG00000036421)	spata6 (ENSONIG00000036474) ##19	bend5 (ENSONIG00000002358) #21	elavl4 (ENSONIG00000031960) #22	dmrta2 (ENSONIG00000002365) #24	faf1 (ENSONIG00000002366) #25	ENSONIG00000002371	ENSONIG00000002375	ENSONIG00000038950	ENSONIG00000002378	ENSONIG00000002381	ENSONIG00000037251	ENSONIG00000002390	ENSONIG00000020200	ENSONIG00000002397	fgf22 (ENSONIG00000002404)	POLRMT (ENSONIG00000002405)	HCN2 (ENSONIG00000002411)	bsg (ENSONIG00000002415)
Midas cichlid	MODERN SPECIES	595											ENSACIG00000008912	ENSACIG00000008905 ##19	bend5 (ENSACIG00000008860) #21	ENSACIG00000008842	AGBL4 (ENSACIG00000008810) ##20	elavl4 (ENSACIG00000008793) #22	dmrta2 (ENSACIG00000008749) #24	faf1 (ENSACIG00000008712) #25	ENSACIG00000008680	rnf11b (ENSACIG00000008644) #28	TTC39A (ENSACIG00000008612) #29	EPS15 (ENSACIG00000008531) #30	calr (ENSACIG00000008509)	tor3a (ENSACIG00000008486)	osbpl9 (ENSACIG00000008374) #31	abl2 (ENSACIG00000008184)	soat1 (ENSACIG00000008124)	ENSACIG00000008065	ENSACIG00000008034	CACNA1E (ENSACIG00000007982)	CEP350 (ENSACIG00000007837)
Pomacentridae	ANCESTRAL SPECIES	231															ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29
Bicolor damselfish	MODERN SPECIES	1293															agbl4 (ENSSPAG00000018855) ##20	elavl4 (ENSSPAG00000018867) #22
Pomacentridae_A	ANCESTRAL SPECIES	48	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.b.c ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29
Spiny chromis	MODERN SPECIES	373															agbl4 (ENSAPOG00000020240) ##20	elavl4 (ENSAPOG00000020329) #22	dmrta2 (ENSAPOG00000020362) #24	faf1 (ENSAPOG00000000696) #25	cdkn2c (ENSAPOG00000020461) #26	rnf11b (ENSAPOG00000020480) #28	TTC39A (ENSAPOG00000020563) #29	b4galnt1a (ENSAPOG00000000946)	ENSAPOG00000020694	sp5l (ENSAPOG00000001117)
Amphiprion	ANCESTRAL SPECIES	70	ENSGT00940000165061	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.b.c ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00530000064273.a.a
Orange clownfish	MODERN SPECIES	11	tpm4a (ENSAPEG00000023244)	ENSAPEG00000023213	RAB8A (ENSAPEG00000023191)	HSH2D (ENSAPEG00000023176)	tax1bp3 (ENSAPEG00000023158)	slc1a6 (ENSAPEG00000023125)	ENSAPEG00000023104	pole4 (ENSAPEG00000023093)	ENSAPEG00000023087	ccl25b (ENSAPEG00000023079)	gclm (ENSAPEG00000023025)	dnttip2 (ENSAPEG00000023016)	spata6 (ENSAPEG00000023000) ##19	bend5 (ENSAPEG00000022984) #21	AGBL4 (ENSAPEG00000022947) ##20	elavl4 (ENSAPEG00000022826) #22	dmrta2 (ENSAPEG00000022824) #24	ENSAPEG00000022784	faf1 (ENSAPEG00000022738) #25	rnf11b (ENSAPEG00000022776) #28	TTC39A (ENSAPEG00000022705) #29	vtg3 (ENSAPEG00000022610)	ENSAPEG00000022550	ENSAPEG00000022515	slc5a9 (ENSAPEG00000022360) #18	ndufa11 (ENSAPEG00000022333)	zgc:171480 (ENSAPEG00000022327)	ctns (ENSAPEG00000022299)	TRAPPC8 (ENSAPEG00000022218)	commd2 (ENSAPEG00000022198)	lmnb2 (ENSAPEG00000022153)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2450																elavl4 (ENSAOCG00000022907) #22
Clown anemonefish	MODERN SPECIES	654															agbl4 (ENSAOCG00000022513) ##20	elavl4 (ENSAOCG00000022503) #22
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000167938	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Oryzias	ANCESTRAL SPECIES	5	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Indian medaka	MODERN SPECIES	13	ENSOMEG00000009380	RAB8A (ENSOMEG00000009507)	HSH2D (ENSOMEG00000009537)	tax1bp3 (ENSOMEG00000009560)	slc1a6 (ENSOMEG00000009608)	ENSOMEG00000009626	pole4 (ENSOMEG00000009651)	ENSOMEG00000009674	ccl25b (ENSOMEG00000009694)	gclm (ENSOMEG00000009726)	ENSOMEG00000009754	ENSOMEG00000009769	ENSOMEG00000009782 ##19	AGBL4 (ENSOMEG00000009813) ##20	bend5 (ENSOMEG00000009893) #21	elavl4 (ENSOMEG00000009988) #22	dmrta2 (ENSOMEG00000010018) #24	faf1 (ENSOMEG00000010098) #25	cdkn2c (ENSOMEG00000010129) #26	rnf11b (ENSOMEG00000010154) #28	TTC39A (ENSOMEG00000010254) #29	ENSOMEG00000010369 #30	ENSOMEG00000010424	tor3a (ENSOMEG00000010451)	osbpl9 (ENSOMEG00000010723) #31	abl2 (ENSOMEG00000010806)	soat1 (ENSOMEG00000010946)	ENSOMEG00000011002	ENSOMEG00000011042	CEP350 (ENSOMEG00000011219)	qsox1 (ENSOMEG00000011282)
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000018154	ENSOJAG00000003687	ENSOJAG00000003715	tax1bp3 (ENSOJAG00000003731)	slc1a6 (ENSOJAG00000003832)	ENSOJAG00000004000	pole4 (ENSOJAG00000004015)	ENSOJAG00000004027	ccl25b (ENSOJAG00000004040)	gclm (ENSOJAG00000004059)	ENSOJAG00000004071	ENSOJAG00000004088	ENSOJAG00000004113 ##19	AGBL4 (ENSOJAG00000004135) ##20	bend5 (ENSOJAG00000004193) #21	elavl4 (ENSOJAG00000004342) #22	dmrta2 (ENSOJAG00000004913) #24	faf1 (ENSOJAG00000005087) #25	cdkn2c (ENSOJAG00000006256) #26	rnf11b (ENSOJAG00000006261) #28	TTC39A (ENSOJAG00000006452) #29	ENSOJAG00000008185 #30	calr (ENSOJAG00000008445)	tor3a (ENSOJAG00000008460)	osbpl9 (ENSOJAG00000008529) #31	abl2 (ENSOJAG00000009043)	soat1 (ENSOJAG00000009327)	CACNA1E (ENSOJAG00000010134)	CEP350 (ENSOJAG00000014447)	ENSOJAG00000014594	qsox1 (ENSOJAG00000014620)
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00940000175969	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT01030000234965	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Chinese medaka	MODERN SPECIES	1012	ENSOSIG00000011794	RAB8A (ENSOSIG00000011798)	ENSOSIG00000011805	ENSOSIG00000011806	slc1a6 (ENSOSIG00000011808)	ENSOSIG00000011815	pole4 (ENSOSIG00000011816)	ENSOSIG00000011818	ccl25b (ENSOSIG00000011819)	gclm (ENSOSIG00000011820)	ENSOSIG00000011821	ENSOSIG00000011823	ENSOSIG00000011825 ##19	AGBL4 (ENSOSIG00000011832) ##20	bend5 (ENSOSIG00000011841) #21	elavl4 (ENSOSIG00000011847) #22	dmrta2 (ENSOSIG00000012209) #24	faf1 (ENSOSIG00000012217) #25	cdkn2c (ENSOSIG00000015859) #26	rnf11b (ENSOSIG00000015861) #28	TTC39A (ENSOSIG00000015862) #29	ENSOSIG00000015863 #30	osbpl9 (ENSOSIG00000015874) #31	abl2 (ENSOSIG00000015897)	soat1 (ENSOSIG00000015943)	ENSOSIG00000016391	CACNA1E (ENSOSIG00000016403)	qsox1 (ENSOSIG00000016910)	lhx4 (ENSOSIG00000000799)	acbd6 (ENSOSIG00000000811)
Japanese Medaka HdrR	MODERN SPECIES	18	ENSORLG00000017038	HSH2D (ENSORLG00000022582)	tax1bp3 (ENSORLG00000017045)	slc1a6 (ENSORLG00000017062)	ENSORLG00000017073	ENSORLG00000025660	ENSORLG00000030041	pole4 (ENSORLG00000017077)	ENSORLG00000025548	ccl25b (ENSORLG00000028881)	gclm (ENSORLG00000017101)	dnttip2 (ENSORLG00000017105)	spata6 (ENSORLG00000027416) ##19	AGBL4 (ENSORLG00000028608) ##20	agbl4 (ENSORLG00000026077) ##20	elavl4 (ENSORLG00000028487) #22	dmrta2 (ENSORLG00000025898) #24	faf1 (ENSORLG00000017140) #25	cdkn2c (ENSORLG00000022673) #26	rnf11b (ENSORLG00000021975) #28	TTC39A (ENSORLG00000017152) #29	ENSORLG00000017166 #30	ENSORLG00000017171	tor3a (ENSORLG00000017174)	osbpl9 (ENSORLG00000017202) #31	abl2 (ENSORLG00000019419)	soat1 (ENSORLG00000017233)	ENSORLG00000027092	ENSORLG00000028210	ENSORLG00000024265	ENSORLG00000022320
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Mangrove rivulus	MODERN SPECIES	8	tpm4a (ENSKMAG00000022304)	ENSKMAG00000022303	ENSKMAG00000022302	ENSKMAG00000022301	tax1bp3 (ENSKMAG00000022300)	slc1a6 (ENSKMAG00000022299)	ENSKMAG00000022298	pole4 (ENSKMAG00000022297)	ENSKMAG00000022296	ccl25b (ENSKMAG00000022295)	gclm (ENSKMAG00000022294)	dnttip2 (ENSKMAG00000022293)	ENSKMAG00000022292	bend5 (ENSKMAG00000022291) #21	AGBL4 (ENSKMAG00000022290) ##20	elavl4 (ENSKMAG00000022289) #22	ENSKMAG00000022288	dmrta2 (ENSKMAG00000022287) #24	faf1 (ENSKMAG00000022286) #25	cdkn2c (ENSKMAG00000022285) #26	rnf11b (ENSKMAG00000022284) #28	TTC39A (ENSKMAG00000022283) #29	ENSKMAG00000022282 #30	calr (ENSKMAG00000022281)	tor3a (ENSKMAG00000022280)	osbpl9 (ENSKMAG00000022268) #31	abl2 (ENSKMAG00000022263)	soat1 (ENSKMAG00000022260)	ENSKMAG00000022251	CACNA1E (ENSKMAG00000022239)	CEP350 (ENSKMAG00000022226)
Turquoise killifish	MODERN SPECIES	1626	LPL (ENSNFUG00015024799)	ENSNFUG00015024777	ENSNFUG00015024723	tpm4a (ENSNFUG00015024661)	ENSNFUG00015024646	RAB8A (ENSNFUG00015024635)	HSH2D (ENSNFUG00015024633)	TAX1BP3 (ENSNFUG00015024630)	GCLM (ENSNFUG00015024629)	dnttip2 (ENSNFUG00015024627)	ENSNFUG00015024626 ##19	ENSNFUG00015024620 ##20	BEND5 (ENSNFUG00015024617) #21	ENSNFUG00015024615	agbl4 (ENSNFUG00015024610) ##20	elavl4 (ENSNFUG00015024586) #22	dmrta2 (ENSNFUG00015024570) #24	FAF1 (ENSNFUG00015024311) #25	cdkn2c (ENSNFUG00015024279) #26	rnf11b (ENSNFUG00015024275) #28	TTC39A (ENSNFUG00015024175) #29	ENSNFUG00015023638 #30	calr (ENSNFUG00015023570)	TOR3A (ENSNFUG00015023561)	osbpl9 (ENSNFUG00015023310) #31	abl2 (ENSNFUG00015023242)	soat1 (ENSNFUG00015023165)	ENSNFUG00015023163	CACNA1E (ENSNFUG00015006364)	CEP350 (ENSNFUG00015005341)	qsox1 (ENSNFUG00015005268)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
NAME_4	ANCESTRAL SPECIES	17	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00950000182891.a.a.b.a.a	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT01100000265702	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Mummichog	MODERN SPECIES	2394	tpm4a (ENSFHEG00000004277)	ENSFHEG00000004295	RAB8A (ENSFHEG00000000108)	ENSFHEG00000004347	tax1bp3 (ENSFHEG00000004366)	slc1a6 (ENSFHEG00000004390)	ENSFHEG00000004402	pole4 (ENSFHEG00000004417)	ENSFHEG00000004430	ccl25b (ENSFHEG00000004442)	gclm (ENSFHEG00000004453)	dnttip2 (ENSFHEG00000004464)	spata6 (ENSFHEG00000004470) ##19	bend5 (ENSFHEG00000000113) #21	AGBL4 (ENSFHEG00000000115) ##20	elavl4 (ENSFHEG00000004530) #22	dmrta2 (ENSFHEG00000004540) #24	faf1 (ENSFHEG00000004608) #25	cdkn2c (ENSFHEG00000004623) #26	rnf11b (ENSFHEG00000004629) #28	TTC39A (ENSFHEG00000004649) #29	ENSFHEG00000004675 #30	ENSFHEG00000000123	tor3a (ENSFHEG00000000749)	osbpl9 (ENSFHEG00000004907) #31	abl2 (ENSFHEG00000005000)	soat1 (ENSFHEG00000005012)	ENSFHEG00000005045	CACNA1E (ENSFHEG00000005080)	CEP350 (ENSFHEG00000005098)	qsox1 (ENSFHEG00000005136)
Sheepshead minnow	MODERN SPECIES	312	GDF5 (ENSCVAG00000018853)	ENSCVAG00000018877	sdc4 (ENSCVAG00000018887)	oser1 (ENSCVAG00000018893)	manf (ENSCVAG00000018909)	rbm15b (ENSCVAG00000018913)	pole4 (ENSCVAG00000018925)	ENSCVAG00000018927	ccl25b (ENSCVAG00000018938)	gclm (ENSCVAG00000000496)	dnttip2 (ENSCVAG00000000497)	ENSCVAG00000018997	ENSCVAG00000019006	bend5 (ENSCVAG00000019014) #21	AGBL4 (ENSCVAG00000019024) ##20	elavl4 (ENSCVAG00000019080) #22
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00940000167938	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Poecilia	ANCESTRAL SPECIES	1	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b	ENSGT00940000167938	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
NAME_6	ANCESTRAL SPECIES	19		ENSGT00940000167938	ENSGT00940000157246.b	ENSGT00940000161678	ENSGT00390000002877	ENSGT00940000159972	ENSGT00940000169504	ENSGT00940000160888	ENSGT00940000165287.a.b	ENSGT00900000141362.a.b	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906
Amazon molly	MODERN SPECIES	303		ENSPFOG00000004190	RAB8A (ENSPFOG00000004198)	ENSPFOG00000004270	tax1bp3 (ENSPFOG00000004292)	slc1a6 (ENSPFOG00000004310)	ENSPFOG00000004463	pole4 (ENSPFOG00000004484)	ENSPFOG00000004525	ccl25b (ENSPFOG00000004562)	gclm (ENSPFOG00000004600)	dnttip2 (ENSPFOG00000004653)	spata6 (ENSPFOG00000023137) ##19	AGBL4 (ENSPFOG00000004717) ##20	bend5 (ENSPFOG00000004753) #21	elavl4 (ENSPFOG00000004811) #22	dmrta2 (ENSPFOG00000004939) #24	faf1 (ENSPFOG00000004981) #25	ENSPFOG00000005246	rnf11b (ENSPFOG00000005255) #28	TTC39A (ENSPFOG00000005356) #29	EPS15 (ENSPFOG00000005835) #30	calr (ENSPFOG00000005960)	tor3a (ENSPFOG00000006170)	osbpl9 (ENSPFOG00000006260) #31	abl2 (ENSPFOG00000006669)	soat1 (ENSPFOG00000006972)	ENSPFOG00000007239	CACNA1E (ENSPFOG00000007877)	CEP350 (ENSPFOG00000008359)	qsox1 (ENSPFOG00000008535)
Sailfin molly	MODERN SPECIES	1039															agbl4 (ENSPLAG00000008104) ##20	elavl4 (ENSPLAG00000008085) #22
Guppy	MODERN SPECIES	456	ENSPREG00000019993	rad54l (ENSPREG00000019955)	ENSPREG00000019898	EPS15L1 (ENSPREG00000019656)	ENSPREG00000019559	ENSPREG00000019547	SZT2 (ENSPREG00000019474)	hyi (ENSPREG00000019414)	ENSPREG00000019400	ENSPREG00000019384	ENSPREG00000019377	ENSPREG00000019359	ENSPREG00000019157	bend5 (ENSPREG00000019102) #21	AGBL4 (ENSPREG00000019035) ##20	elavl4 (ENSPREG00000018937) #22	dmrta2 (ENSPREG00000018881) #24	faf1 (ENSPREG00000018831) #25	ENSPREG00000018593	rnf11b (ENSPREG00000018536) #28	TTC39A (ENSPREG00000018452) #29	EPS15 (ENSPREG00000018381) #30	calr (ENSPREG00000018357)	tor3a (ENSPREG00000018330)	osbpl9 (ENSPREG00000018181) #31	abl2 (ENSPREG00000018109)	soat1 (ENSPREG00000018080)	CACNA1E (ENSPREG00000017980)	qsox1 (ENSPREG00000017924)	lhx4 (ENSPREG00000017901)	acbd6 (ENSPREG00000017881)
Platyfish	MODERN SPECIES	23	tpm4a (ENSXMAG00000003376)	RAB8A (ENSXMAG00000003370)	HSH2D (ENSXMAG00000003369)	tax1bp3 (ENSXMAG00000028183)	slc1a6 (ENSXMAG00000003358)	ENSXMAG00000023760	pole4 (ENSXMAG00000003356)	ENSXMAG00000028000	ccl25b (ENSXMAG00000023965)	gclm (ENSXMAG00000003349)	dnttip2 (ENSXMAG00000025809)	ENSXMAG00000003345 ##19	bend5 (ENSXMAG00000003343) #21	ENSXMAG00000027579	AGBL4 (ENSXMAG00000003340) ##20	elavl4 (ENSXMAG00000025683) #22	dmrta2 (ENSXMAG00000003327) #24	faf1 (ENSXMAG00000003310) #25	cdkn2c (ENSXMAG00000028823) #26	rnf11b (ENSXMAG00000022177) #28	TTC39A (ENSXMAG00000003295) #29	ENSXMAG00000003270 #30	calr (ENSXMAG00000003259)	tor3a (ENSXMAG00000024571)	osbpl9 (ENSXMAG00000003213) #31	abl2 (ENSXMAG00000003197)	soat1 (ENSXMAG00000003187)	ENSXMAG00000024288	CACNA1E (ENSXMAG00000022257)	CEP350 (ENSXMAG00000018995)	qsox1 (ENSXMAG00000018978)
Otomorpha	ANCESTRAL SPECIES	53	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00940000163668	ENSGT00940000155601.g	ENSGT00940000155130	ENSGT00940000159504
Otophysi	ANCESTRAL SPECIES	240			ENSGT00390000017452	ENSGT00940000160184.c.b	ENSGT00530000063713.b.a	ENSGT00940000159443	ENSGT00940000157511	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000164186.a	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a
Characiphysae	ANCESTRAL SPECIES	30	ENSGT00390000014577.b	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000164186.a.a	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a	ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309
Channel catfish	MODERN SPECIES	24	ENSIPUG00000001052	kazna (ENSIPUG00000001058)	kazna (ENSIPUG00000001083)	Tmem51 (ENSIPUG00000001091)	abl2 (ENSIPUG00000001109)	fnbp1l (ENSIPUG00000001200)	bcar3 (ENSIPUG00000001226)	mrpl55 (ENSIPUG00000001273)	slc5a9 (ENSIPUG00000001280) #18	gclm (ENSIPUG00000001300)	dnttip2 (ENSIPUG00000001308)	spata6 (ENSIPUG00000001314) ##19	AGBL4 (ENSIPUG00000001331) ##20	bend5 (ENSIPUG00000001350) #21	agbl4 (ENSIPUG00000001359) ##20	elavl4 (ENSIPUG00000001381) #22	dmrta2 (ENSIPUG00000001399) #24	faf1 (ENSIPUG00000001417) #25	cdkn2c (ENSIPUG00000001472) #26	rnf11 (ENSIPUG00000001479) #28	ttc39a (ENSIPUG00000001503) #29	eps15 (ENSIPUG00000001636) #30	calr (ENSIPUG00000001657)	TOR3A (ENSIPUG00000001675)	osbpl9 (ENSIPUG00000001760) #31	l (ENSIPUG00000001908)	depdc1 (ENSIPUG00000001960)	ENSIPUG00000001992	ENSIPUG00000002019	aldh9a1a (ENSIPUG00000002039)	Tmco1 (ENSIPUG00000002081)
Characiphysae_b	ANCESTRAL SPECIES	34	ENSGT00390000014577.b	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000164186.a.a	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a	ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309
Electric eel	MODERN SPECIES	50	rimkla (ENSEEEG00000001846)	ENSEEEG00000001845	ENSEEEG00000001843	kazna (ENSEEEG00000001842)	tmem51a (ENSEEEG00000001839)	abl2 (ENSEEEG00000001837)	fnbp1l (ENSEEEG00000001813)	bcar3 (ENSEEEG00000001806)	paox1 (ENSEEEG00000001804)	zgc:171480 (ENSEEEG00000001802)	slc5a9 (ENSEEEG00000001752) #18	gclm (ENSEEEG00000001742)	dnttip2 (ENSEEEG00000001741)	spata6 (ENSEEEG00000001740) ##19	AGBL4 (ENSEEEG00000001732) ##20	elavl4 (ENSEEEG00000001533) #22	dmrta2 (ENSEEEG00000001514) #24	faf1 (ENSEEEG00000001084) #25	cdkn2c (ENSEEEG00000001064) #26	ENSEEEG00000001063
Characoidei	ANCESTRAL SPECIES	77	ENSGT00390000014577.b	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT01030000234965	ENSGT00950000182888.a.a.b	ENSGT00940000154690 #31	ENSGT00940000164186.a.a	ENSGT00940000164186.a.b	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a
Mexicana tetra	MODERN SPECIES	21	ENSAMXG00000039285	kazna (ENSAMXG00000030117)	tmem51a (ENSAMXG00000032721)	abl2 (ENSAMXG00000002300)	fnbp1l (ENSAMXG00000029673)	bcar3 (ENSAMXG00000031215)	paox1 (ENSAMXG00000015493)	zgc:171480 (ENSAMXG00000043839)	slc5a9 (ENSAMXG00000015433) #18	gclm (ENSAMXG00000042967)	ENSAMXG00000037295	spata6 (ENSAMXG00000031993) ##19	bend5 (ENSAMXG00000015339) #21	AGBL4 (ENSAMXG00000034961) ##20	agbl4 (ENSAMXG00000040007) ##20	elavl4 (ENSAMXG00000000687) #22	dmrta2 (ENSAMXG00000039840) #24	faf1 (ENSAMXG00000018458) #25	cdkn2c (ENSAMXG00000035324) #26	rnf11b (ENSAMXG00000030529) #28	TTC39A (ENSAMXG00000034026) #29	ENSAMXG00000040809	ENSAMXG00000042961	EPS15 (ENSAMXG00000041089) #30	ENSAMXG00000018577	tor3a (ENSAMXG00000034163)	osbpl9 (ENSAMXG00000018615) #31	si:ch211-198n5.11 (ENSAMXG00000018594)	LMOD1 (ENSAMXG00000037455)	kdm5bb (ENSAMXG00000018648)	ENSAMXG00000018664
Red-bellied piranha	MODERN SPECIES	28	rimkla (ENSPNAG00000017669)	ENSPNAG00000017649	kazna (ENSPNAG00000017625)	tmem51a (ENSPNAG00000005790)	abl2 (ENSPNAG00000017552)	fnbp1l (ENSPNAG00000003480)	bcar3 (ENSPNAG00000017382)	paox1 (ENSPNAG00000017334)	zgc:171480 (ENSPNAG00000017309)	slc5a9 (ENSPNAG00000017301) #18	gclm (ENSPNAG00000017250)	dnttip2 (ENSPNAG00000017234)	spata6 (ENSPNAG00000017223) ##19	AGBL4 (ENSPNAG00000017209) ##20	bend5 (ENSPNAG00000017186) #21	elavl4 (ENSPNAG00000017169) #22	dmrta2 (ENSPNAG00000017040) #24	faf1 (ENSPNAG00000017029) #25	cdkn2c (ENSPNAG00000016988) #26	rnf11b (ENSPNAG00000016982) #28	TTC39A (ENSPNAG00000016968) #29	EPS15 (ENSPNAG00000016839) #30	ENSPNAG00000016813	tor3a (ENSPNAG00000016760)	osbpl9 (ENSPNAG00000016711) #31	si:ch211-198n5.11 (ENSPNAG00000016691)	si:ch211-198n5.11 (ENSPNAG00000016655)	rpe65b (ENSPNAG00000016468)	depdc1a (ENSPNAG00000016414)	ENSPNAG00000016404
Cyprinoidei	ANCESTRAL SPECIES	7	ENSGT00940000155601.g	ENSGT00940000163668	ENSGT00950000183081.a.a.a	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00940000155042.a.a ##20	ENSGT00390000001724.l.e #21	ENSGT00390000001724.l.f #21	ENSGT00940000155042.a.b ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.a #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000182915.b.b.a.a	ENSGT00950000182888.a.a.b	ENSGT00940000154690.a #31	ENSGT00940000164186.a	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a	ENSGT00940000165045	ENSGT00390000002743	ENSGT00390000009065
Zebrafish	MODERN SPECIES	23	CACNA1E (ENSDARG00000062346)	ENSDARG00000002295	soat1 (ENSDARG00000062297)	abl2 (ENSDARG00000013841)	fnbp1l (ENSDARG00000020131)	bcar3 (ENSDARG00000016981)	paox1 (ENSDARG00000043403)	zgc:171480 (ENSDARG00000043402)	slc5a9 (ENSDARG00000005518) #18	gclm (ENSDARG00000018953)	dnttip2 (ENSDARG00000057648)	spata6 (ENSDARG00000021115) ##19	AGBL4 (ENSDARG00000110838) ##20	bend5 (ENSDARG00000075624) #21	agbl4 (ENSDARG00000068050) ##20	elavl4 (ENSDARG00000045639) #22	dmrta2 (ENSDARG00000039412) #24	faf1 (ENSDARG00000022418) #25	cdkn2c (ENSDARG00000057610) #26	rnf11b (ENSDARG00000040635) #28	TTC39A (ENSDARG00000074126) #29	EPS15 (ENSDARG00000078216) #30	calr (ENSDARG00000076290)	tor3a (ENSDARG00000079308)	osbpl9 (ENSDARG00000069298) #31	si:ch211-198n5.11 (ENSDARG00000054400)	rpe65b (ENSDARG00000094752)	rpe65c (ENSDARG00000054420)	depdc1a (ENSDARG00000018165)	smim15 (ENSDARG00000086699)	ndufaf2 (ENSDARG00000069286)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	6	ENSGT00940000159504.m	ENSGT00940000155130.j	ENSGT00940000155601.g.db	ENSGT00950000183081.a.a.a.o.b	ENSGT00940000153838.b.c	ENSGT00950000183047.c.b.e	ENSGT00940000154130.a.a.b.k	ENSGT00940000157511.x	ENSGT00940000165232	ENSGT00940000157546.n #18	ENSGT00510000047658.b	ENSGT00510000048142	ENSGT00530000063821.a.b ##19	ENSGT00940000155042.a.a.a ##20	ENSGT00390000001724.l.e #21	ENSGT00940000157399.g.a #22	ENSGT00940000161649.c.b #24	ENSGT00940000154831.f #25	ENSGT00940000160194.g.b #26	ENSGT00730000110988.wb.a.b #28	ENSGT00950000182917.a.b.a.g #29	ENSGT00940000155751.a.a #30	ENSGT00950000182915.b.b.a.a.ab.a	ENSGT00950000182888.a.a.b.c	ENSGT00940000154690.a.b #31	ENSGT00950000182913.B.f.b	ENSGT00950000182976.b.a.a	ENSGT00390000002743.d	ENSGT00940000165045	ENSGT00390000002743.c.a	ENSGT00390000009065.b
Goldfish	MODERN SPECIES	3210											ENSCARG00000049495	AGBL4 (ENSCARG00000049445) ##20	BEND5 (ENSCARG00000049427) #21	ENSCARG00000049400	ENSCARG00000049388	elavl4 (ENSCARG00000049127) #22
Cyprininae_a	ANCESTRAL SPECIES	115	ENSGT00940000155130.j	ENSGT00940000155601.g.db	ENSGT00940000163668	ENSGT00950000183081.a.a.a.o.b	ENSGT00940000153838.b.c	ENSGT00950000183047.c.b.e	ENSGT00940000154130.a.a.b.k	ENSGT00940000157511.x	ENSGT00940000165232.a	ENSGT00940000157546.n #18	ENSGT00510000047658.b	ENSGT00510000048142	ENSGT00530000063821.a.b ##19	ENSGT00940000155042.a.a.a ##20	ENSGT00390000001724.l.e #21	ENSGT00940000157399.g.a #22	ENSGT00940000161649.c.b #24	ENSGT00940000154831.f #25	ENSGT00940000160194.g.b #26	ENSGT00730000110988.wb.a.b #28	ENSGT00950000182917.a.b.a.g #29	ENSGT00940000155751.a.a #30	ENSGT00950000182915.b.b.a.a.ab.a	ENSGT00950000182888.a.a.b.c	ENSGT00940000154690.a.b #31	ENSGT00950000182913.B.f.b	ENSGT00950000182976.b.a.a	ENSGT00390000002743.d	ENSGT00940000165045	ENSGT00390000009065.a	ENSGT01050000244838.H.c.a.b
Common carp reference	MODERN SPECIES	17	lhx4 (ENSCCRG00000052776)	qsox1 (ENSCCRG00000036615)	CEP350 (ENSCCRG00000033583)	ENSCCRG00000077570	ENSCCRG00000064781	soat1 (ENSCCRG00000056506)	abl2 (ENSCCRG00000066635)	fnbp1l (ENSCCRG00000035347)	bcar3 (ENSCCRG00000059518)	paox1 (ENSCCRG00000035280)	zgc:171480 (ENSCCRG00000074058)	slc5a9 (ENSCCRG00000004378) #18	gclm (ENSCCRG00000021467)	spata6 (ENSCCRG00000021474) ##19	BEND5 (ENSCCRG00000060382) #21	elavl4 (ENSCCRG00000038365) #22	dmrta2 (ENSCCRG00000082606) #24	faf1 (ENSCCRG00000011182) #25	cdkn2c (ENSCCRG00000064172) #26	rnf11b (ENSCCRG00000077802) #28	TTC39A (ENSCCRG00000042342) #29	ENSCCRG00000002042 #30	calr (ENSCCRG00000002023)	tor3a (ENSCCRG00000002014)	osbpl9 (ENSCCRG00000006861) #31	ENSCCRG00000004212	depdc1a (ENSCCRG00000034832)	smim15 (ENSCCRG00000034829)	ercc8 (ENSCCRG00000009730)	PDE4D (ENSCCRG00000001498)	rab3c (ENSCCRG00000001296)
Golden-line barbel	MODERN SPECIES	15	lhx4 (ENSSGRG00000005639)	qsox1 (ENSSGRG00000005642)	CEP350 (ENSSGRG00000005652)	ENSSGRG00000005666	ENSSGRG00000005667	abl2 (ENSSGRG00000005672)	fnbp1l (ENSSGRG00000005752)	bcar3 (ENSSGRG00000006475)	ENSSGRG00000006489	zgc:171480 (ENSSGRG00000006490)	slc5a9 (ENSSGRG00000006504) #18	gclm (ENSSGRG00000006895)	ENSSGRG00000006897	spata6 (ENSSGRG00000006899) ##19	AGBL4 (ENSSGRG00000006900) ##20	elavl4 (ENSSGRG00000006913) #22	dmrta2 (ENSSGRG00000007156) #24	faf1 (ENSSGRG00000007162) #25	cdkn2c (ENSSGRG00000008333) #26	rnf11b (ENSSGRG00000008334) #28	TTC39A (ENSSGRG00000008336) #29	ENSSGRG00000008561 #30	ENSSGRG00000009099	osbpl9 (ENSSGRG00000009352) #31	ENSSGRG00000009716	RPE65 (ENSSGRG00000009718)	depdc1a (ENSSGRG00000009723)	ndufaf2 (ENSSGRG00000009724)	smim15 (ENSSGRG00000009725)	ercc8 (ENSSGRG00000009726)	elovl7a (ENSSGRG00000009903)
Cyprininae	ANCESTRAL SPECIES	531									ENSGT00950000183047.c.b.f	ENSGT00940000154130.a.a.b.l	ENSGT00940000157546.m #18	ENSGT00510000047658.a	ENSGT00650000094816	ENSGT00530000063821.a.a ##19	ENSGT00940000155042.a.a.b ##20	ENSGT00940000157399.g.b #22	ENSGT00940000161649.c.a #24	ENSGT00940000154831.e #25	ENSGT00940000160194.g.a #26	ENSGT00730000110988.wb.a.a #28	ENSGT00950000182917.a.b.a.h #29	ENSGT00940000155751.a.b #30	ENSGT00950000182915.b.b.a.a.ab.b	ENSGT00950000182888.a.a.b.d	ENSGT00940000154690.a.a #31	ENSGT00940000164186.a	ENSGT00950000182913.B.f.a	ENSGT00950000182976.b.a.b
Goldfish	MODERN SPECIES	48	asic1a (ENSCARG00000017188)	ENSCARG00000017235	wdr13 (ENSCARG00000017242)	ENSCARG00000017306	ENSCARG00000017328	neflb (ENSCARG00000017341)	nefmb (ENSCARG00000017361)	dock5 (ENSCARG00000017536)	ENSCARG00000019460	vsig8b (ENSCARG00000019465)	LRRTM4 (ENSCARG00000019472)	atp2b3a (ENSCARG00000019486)	igf3 (ENSCARG00000019581)	serping1 (ENSCARG00000019595)	agbl4 (ENSCARG00000019615) ##20	elavl4 (ENSCARG00000019666) #22	dmrta2 (ENSCARG00000019977) #24	faf1 (ENSCARG00000020005) #25	cdkn2c (ENSCARG00000020244) #26	rnf11b (ENSCARG00000020251) #28	TTC39A (ENSCARG00000020363) #29	ENSCARG00000022966 #30	calr (ENSCARG00000023036)	tor3a (ENSCARG00000023059)	osbpl9 (ENSCARG00000023118) #31	si:ch211-198n5.11 (ENSCARG00000023538)	RPE65 (ENSCARG00000000457)	depdc1a (ENSCARG00000000766)	smim15 (ENSCARG00000000846)	ndufaf2 (ENSCARG00000000852)	ENSCARG00000000857
Cyprininae_a	ANCESTRAL SPECIES	319																ENSGT00940000157399.g.b #22	ENSGT00940000161649.c.a #24	ENSGT00940000154831.e #25	ENSGT00940000160194.g.a #26	ENSGT00730000110988.wb.a.a #28	ENSGT00950000182917.a.b.a.h #29	ENSGT00940000155751.a.b #30	ENSGT00950000182915.b.b.a.a.ab.b	ENSGT00950000182888.a.a.b.d	ENSGT00940000154690.a.a #31	ENSGT00940000164186.a	ENSGT00950000182913.B.f.a	ENSGT00950000182976.b.a.b	ENSGT00390000002743.c.a	ENSGT00390000009065.b	ENSGT01050000244838.H.c.a.a
Common carp reference	MODERN SPECIES	23	acbd6 (ENSCCRG00000018010)	lhx4 (ENSCCRG00000063647)	qsox1 (ENSCCRG00000073944)	CEP350 (ENSCCRG00000036598)	ENSCCRG00000002425	soat1 (ENSCCRG00000035669)	abl2 (ENSCCRG00000035586)	fnbp1l (ENSCCRG00000074803)	bcar3 (ENSCCRG00000079199)	zgc:171480 (ENSCCRG00000023323)	slc5a9 (ENSCCRG00000023332) #18	gclm (ENSCCRG00000023416)	dnttip2 (ENSCCRG00000023426)	spata6 (ENSCCRG00000057791) ##19	AGBL4 (ENSCCRG00000073136) ##20	elavl4 (ENSCCRG00000081829) #22	dmrta2 (ENSCCRG00000066483) #24	faf1 (ENSCCRG00000011112) #25	cdkn2c (ENSCCRG00000053613) #26	TTC39A (ENSCCRG00000029816) #29	EPS15 (ENSCCRG00000001486) #30	calr (ENSCCRG00000001424)	tor3a (ENSCCRG00000001394)	osbpl9 (ENSCCRG00000006487) #31	si:ch211-198n5.11 (ENSCCRG00000029793)	ENSCCRG00000029698	depdc1a (ENSCCRG00000029667)	ndufaf2 (ENSCCRG00000075295)	ercc8 (ENSCCRG00000047149)	elovl7a (ENSCCRG00000060874)	ENSCCRG00000056002
Golden-line barbel	MODERN SPECIES	271														agbl4 (ENSSGRG00000002671) ##20	ELAVL4 (ENSSGRG00000002673) #22	elavl4 (ENSSGRG00000002675) #22	dmrta2 (ENSSGRG00000002677) #24	dmrta2 (ENSSGRG00000002680) #24	faf1 (ENSSGRG00000002701) #25	cdkn2c (ENSSGRG00000002867) #26	rnf11b (ENSSGRG00000002868) #28	TTC39A (ENSSGRG00000002888) #29	ENSSGRG00000003389 #30	ENSSGRG00000003707	tor3a (ENSSGRG00000003708)	osbpl9 (ENSSGRG00000003719) #31	si:ch211-198n5.11 (ENSSGRG00000003761)	RPE65 (ENSSGRG00000003855)	depdc1a (ENSSGRG00000006618)	ercc8 (ENSSGRG00000006723)	elovl7a (ENSSGRG00000006864)
Cyprininae	ANCESTRAL SPECIES	1482															ENSGT00940000155042.a.b ##20	ENSGT00940000157399.h #22
Cyprininae_a	ANCESTRAL SPECIES	1122															ENSGT00940000155042.a.b ##20	ENSGT00940000157399.h #22
Golden-line barbel	MODERN SPECIES	271															agbl4 (ENSSGRG00000002671) ##20	ELAVL4 (ENSSGRG00000002673) #22	elavl4 (ENSSGRG00000002675) #22	dmrta2 (ENSSGRG00000002677) #24	dmrta2 (ENSSGRG00000002680) #24	faf1 (ENSSGRG00000002701) #25	cdkn2c (ENSSGRG00000002867) #26	rnf11b (ENSSGRG00000002868) #28	TTC39A (ENSSGRG00000002888) #29	ENSSGRG00000003389 #30	ENSSGRG00000003707	tor3a (ENSSGRG00000003708)	osbpl9 (ENSSGRG00000003719) #31	si:ch211-198n5.11 (ENSSGRG00000003761)	RPE65 (ENSSGRG00000003855)	depdc1a (ENSSGRG00000006618)	ercc8 (ENSSGRG00000006723)
Clupeiformes	ANCESTRAL SPECIES	111	ENSGT00730000110872.b.cb	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546 #18	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a ##19	ENSGT00390000001724.l #21	ENSGT00940000155042.a.a ##20	ENSGT00940000157399 #22	ENSGT00940000161649 #24	ENSGT00940000154831 #25	ENSGT00940000160194 #26	ENSGT00730000110988.wb.b.f #28	ENSGT00950000182917.a.b.a #29	ENSGT00940000155751.a #30	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00510000048601.a	ENSGT00510000049619	ENSGT00940000158946	ENSGT01030000234579.C.k
Atlantic herring	MODERN SPECIES	1	PTGER3 (ENSCHAG00000012359)	ankrd13c (ENSCHAG00000012050)	LRRC7 (ENSCHAG00000011575)	depdc1a (ENSCHAG00000011503)	rpe65b (ENSCHAG00000010933)	si:ch211-198n5.11 (ENSCHAG00000010738)	fnbp1l (ENSCHAG00000010108)	bcar3 (ENSCHAG00000009829)	paox1 (ENSCHAG00000009791)	zgc:171480 (ENSCHAG00000009784)	slc5a9 (ENSCHAG00000009121) #18	gclm (ENSCHAG00000009037)	ENSCHAG00000009014	spata6 (ENSCHAG00000008998) ##19	AGBL4 (ENSCHAG00000008915) ##20	elavl4 (ENSCHAG00000008272) #22	dmrta2 (ENSCHAG00000008219) #24	faf1 (ENSCHAG00000005915) #25	cdkn2c (ENSCHAG00000005802) #26	ENSCHAG00000005784 #28	TTC39A (ENSCHAG00000003431) #29	EPS15 (ENSCHAG00000003036) #30	zgc:92591 (ENSCHAG00000002983)	tp63 (ENSCHAG00000001532)	tprg1 (ENSCHAG00000001439)	ENSCHAG00000001411	lpp (ENSCHAG00000001327)	atp1b1a (ENSCHAG00000001285)	dpt (ENSCHAG00000001272)	ENSCHAG00000001063	ENSCHAG00000001046
Denticle herring	MODERN SPECIES	4	lrrc40 (ENSDCDG00000003268)	LRRC7 (ENSDCDG00000003363)	depdc1a (ENSDCDG00000003571)	rpe65c (ENSDCDG00000003616)	si:ch211-198n5.11 (ENSDCDG00000003959)	fnbp1l (ENSDCDG00000004000)	bcar3 (ENSDCDG00000004556)	paox1 (ENSDCDG00000004570)	zgc:171480 (ENSDCDG00000004575)	slc5a9 (ENSDCDG00000004636) #18	gclm (ENSDCDG00000005066)	ENSDCDG00000005072	spata6 (ENSDCDG00000005081) ##19	AGBL4 (ENSDCDG00000005104) ##20	bend5 (ENSDCDG00000005117) #21	elavl4 (ENSDCDG00000005159) #22	dmrta2 (ENSDCDG00000005360) #24	faf1 (ENSDCDG00000005390) #25	cdkn2c (ENSDCDG00000010020) #26	RNF11 (ENSDCDG00000010028) #28	TTC39A (ENSDCDG00000010326) #29	EPS15 (ENSDCDG00000015400) #30	tp63 (ENSDCDG00000016275)	tprg1 (ENSDCDG00000018026)	lpp (ENSDCDG00000018041)	bcl6aa (ENSDCDG00000018051)	si:ch73-14h10.2 (ENSDCDG00000018056)	zbtb11 (ENSDCDG00000018058)	dpt (ENSDCDG00000018069)	ENSDCDG00000018084	atp1b1a (ENSDCDG00000018085)
Spotted gar	MODERN SPECIES	648	klhl20 (ENSLOCG00000009186)	cenpl (ENSLOCG00000009201)	DARS2 (ENSLOCG00000009206)	brinp2 (ENSLOCG00000009229)	acbd6 (ENSLOCG00000009237)	lhx4 (ENSLOCG00000009245)	qsox1 (ENSLOCG00000009251)	CEP350 (ENSLOCG00000009262)	ENSLOCG00000009285	ENSLOCG00000009295	spata6 (ENSLOCG00000009309) ##19	AGBL4 (ENSLOCG00000009327) #20	bend5 (ENSLOCG00000009332) #21	ENSLOCG00000009342 #20	ENSLOCG00000009353 #20	elavl4 (ENSLOCG00000009363) #22	dmrta2 (ENSLOCG00000009379) #24	faf1 (ENSLOCG00000009388) #25	cdkn2c (ENSLOCG00000009408) #26	RNF11 (ENSLOCG00000009419) #28	TTC39A (ENSLOCG00000009436) #29	ENSLOCG00000009453 #30	calr (ENSLOCG00000009468)	mfsd14a1 (ENSLOCG00000009483)	bcar3 (ENSLOCG00000009489)	fnbp1l (ENSLOCG00000009505)	si:ch211-198n5.11 (ENSLOCG00000009522)	rpe65b (ENSLOCG00000009534)	depdc1a (ENSLOCG00000009559)	LRRC7 (ENSLOCG00000009583)	lrrc40 (ENSLOCG00000009608)
Reedfish	MODERN SPECIES	1	atpaf1 (ENSECRG00000009928)	ENSECRG00000009916	frem1b (ENSECRG00000009851)	nfia (ENSECRG00000009794)	tm2d1 (ENSECRG00000009762)	PATJ (ENSECRG00000009615)	ENSECRG00000009566	tal1 (ENSECRG00000009558) #10	stil (ENSECRG00000009542) #11	zgc:171480 (ENSECRG00000009525)	slc5a9 (ENSECRG00000009464) #18	spata6 (ENSECRG00000009395) ##19	AGBL4 (ENSECRG00000009373) ##20	bend5 (ENSECRG00000009353) #21	agbl4 (ENSECRG00000009332) ##20	elavl4 (ENSECRG00000009035) #22	ENSECRG00000008927	dmrta2 (ENSECRG00000008913) #24	faf1 (ENSECRG00000008876) #25	cdkn2c (ENSECRG00000008847) #26	rnf11b (ENSECRG00000008822) #28	TTC39A (ENSECRG00000008798) #29	EPS15 (ENSECRG00000008774) #30	calr (ENSECRG00000008755)	osbpl9 (ENSECRG00000008702) #31	nrd1b (ENSECRG00000008630) #32	RAB3B (ENSECRG00000008613) #33	mfsd14a1 (ENSECRG00000008597)	sass6 (ENSECRG00000008567)	trmt13 (ENSECRG00000008549)	lrrc39 (ENSECRG00000008522)
Elephant shark	MODERN SPECIES	1597	nfia (ENSCMIG00000019423)	tm2d1 (ENSCMIG00000019416)	PATJ (ENSCMIG00000019399)	ENSCMIG00000019386	tal1 (ENSCMIG00000019384) #10	stil (ENSCMIG00000019380) #11	cmpk (ENSCMIG00000019378)	foxe3 (ENSCMIG00000019375)	ENSCMIG00000019373 #14	TRABD2B (ENSCMIG00000019370) #15	ENSCMIG00000019364	zgc:171480 (ENSCMIG00000019361)	slc5a9 (ENSCMIG00000019236) #18	ENSCMIG00000019181 #19	agbl4 (ENSCMIG00000019163) #20	elavl4 (ENSCMIG00000019132) #22	ENSCMIG00000019123
Ciona	ANCESTRAL SPECIES																	ENSGT00940000157399 #22
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000018448	ENSCING00000009047	ENSCING00000012430	ENSCING00000021196	ENSCING00000022563	ENSCING00000012429	ENSCING00000012428	ENSCING00000012427	ENSCING00000012426	ENSCING00000012425	ENSCING00000021922	ENSCING00000012421	ENSCING00000009048	ENSCING00000012420	ENSCING00000003009	ENSCING00000009052 #22	ENSCING00000009055	ENSCING00000023806	ENSCING00000023232	ENSCING00000020912	ENSCING00000009058	ENSCING00000000889	ENSCING00000012415	ENSCING00000020759	ENSCING00000016159	ENSCING00000023377	ENSCING00000019046	ENSCING00000018004	ENSCING00000004747	ENSCING00000004748	ENSCING00000004750
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000157399 #22
Caenorhabditis elegans	MODERN SPECIES	1	sra-1 (WBGene00005027)	AH6.17 (WBGene00219290)	mex-6 (WBGene00003231)	sra-2 (WBGene00005028)	sra-9 (WBGene00005035)	sra-8 (WBGene00005034)	sra-3 (WBGene00005029)	sra-4 (WBGene00005030)	sra-7 (WBGene00005033)	sra-6 (WBGene00005032)	F35H8.12 (WBGene00219291)	F35H8.1 (WBGene00009446)	F35H8.2 (WBGene00009447)	zfp-2 (WBGene00009448)	F35H8.4 (WBGene00009449)	exc-7 (WBGene00001368) #22	wee-1.1 (WBGene00006938)	ugt-58 (WBGene00009450)	eral-1 (WBGene00008456)	E02H1.1 (WBGene00008455)	tag-124 (WBGene00006473)	parp-2 (WBGene00004050)	E02H1.5 (WBGene00008457)	E02H1.6 (WBGene00008458)	mrpl-53 (WBGene00008459)	nhr-19 (WBGene00003618)	pap-2 (WBGene00011791)	T15H9.5 (WBGene00011790)	T15H9.4 (WBGene00011789)	hlh-6 (WBGene00001952)	hal-3 (WBGene00011788)