Vertebrata	ANCESTRAL SPECIES	345															ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22
Gnathostomata	ANCESTRAL SPECIES	28	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000013899.b
Euteleostomi	ANCESTRAL SPECIES	42	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a	ENSGT00940000153201	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Actinopterygii	ANCESTRAL SPECIES	12	ENSGT00940000154348.c.b.a	ENSGT00940000156124	ENSGT00940000159848	ENSGT00940000156152.e.a	ENSGT00390000007640.b	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a #32	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Osteoglossocephalai	ANCESTRAL SPECIES	81											ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182.g.a ##30	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000157223 #8	ENSGT00950000183186.B.a	ENSGT00940000159184 #9	ENSGT00390000013048 #10	ENSGT00950000182913.A.b.b #11	ENSGT00950000182913.A.b.a #12	ENSGT00940000164905 #13	ENSGT00940000154666 #14	ENSGT00940000156956 #15	ENSGT00940000153678.a.b #16	ENSGT00390000006485.d #17	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b #19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00950000182973.b.a #32	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a #37	ENSGT00390000008748.b.g.b
Cyprinoidei	ANCESTRAL SPECIES	41	ENSGT00940000157223 #8	ENSGT00950000183186.B.a	ENSGT00940000159184 #9	ENSGT00390000013048 #10	ENSGT00950000182913.A.b.b #11	ENSGT00950000182913.A.b.a #12	ENSGT00940000164905.e.a #13	ENSGT00940000154666 #14	ENSGT00940000156956 #15	ENSGT00940000153678.a.b #16	ENSGT00390000006485.d #17	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b.c #19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00950000182973.b.a #32	ENSGT00940000155628 #33	ENSGT00390000006548.a.a #34	ENSGT00940000156684.t #35	ENSGT00940000154617.B.c #36	ENSGT00940000159572.a.a #37
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	110	ENSGT00390000000221.A.c.b #7	ENSGT00940000157223.a #8	ENSGT00940000159184.d #9	ENSGT00390000013048.u.a #10	ENSGT00950000182913.A.b.b.a #11	ENSGT00950000182913.A.b.a.f #12	ENSGT00940000164905.e.a #13	ENSGT00940000154666.u #14	ENSGT00940000156956.k.b #15	ENSGT00940000153678.a.b.d #16	ENSGT00390000006485.d.i #17	ENSGT00940000166567.l #18	ENSGT00940000154285.b.a.b.c.a #19	ENSGT00940000156939.e.b #20	ENSGT00390000000417.a.b.i #21	ENSGT00390000010152.g.b #22	ENSGT00940000159763.c #23	ENSGT00940000157816.a.b.j #24	ENSGT00940000166897.b #25	ENSGT00940000160601.m #26	ENSGT00940000158825.c.g #27	ENSGT00940000161128.j #28	ENSGT01090000260003.a.a.e #29	ENSGT00940000157182.g.b.s #30	ENSGT00390000002105.a #31	ENSGT00950000182973.b.a.e #32	ENSGT00940000155628.q #33	ENSGT00390000006548.a.a #34	ENSGT00940000156684.t.b #35	ENSGT00940000154617.B.c.a #36	ENSGT00940000159572.a.a.b #37
Common carp reference	MODERN SPECIES	6	MICAL2 (ENSCCRG00000064288)	dkk3a (ENSCCRG00000014225) #7	usp47 (ENSCCRG00000014365) ##8	vat1l (ENSCCRG00000027568) #9	bola3 (ENSCCRG00000002888) #10	bco1 (ENSCCRG00000027496) #11	bco1l (ENSCCRG00000013748) #12	ENSCCRG00000013741 #13	ipo7 (ENSCCRG00000013081) #14	tmem41b (ENSCCRG00000071144) #15	DENND5A (ENSCCRG00000043145) #16	sinhcafl (ENSCCRG00000062499) #17	ENSCCRG00000057903 #19	ENSCCRG00000043061 #20	dhcr7 (ENSCCRG00000057526) #21	nadsyn1 (ENSCCRG00000002307) #22	tpcn2 (ENSCCRG00000045490) #23	ccnd1 (ENSCCRG00000007012) #24	lto1 (ENSCCRG00000065219) #25	fgf19 (ENSCCRG00000004531) #26	fgf4 (ENSCCRG00000067051) #27	fgf3 (ENSCCRG00000004557) #28	zgc:153993 (ENSCCRG00000046765) #29	ano1a (ENSCCRG00000020360) #30	FADD (ENSCCRG00000072094) #31	pacsin3 (ENSCCRG00000021727) #32	csnk1g1 (ENSCCRG00000033888) #33	ENSCCRG00000012636	rps17 (ENSCCRG00000074570) #34	neo1a (ENSCCRG00000028503) #35	chrna7a (ENSCCRG00000016316) #36
Golden-line barbel	MODERN SPECIES	61	TEAD1 (ENSSGRG00000015278)	parvab (ENSSGRG00000015281)	MICAL2 (ENSSGRG00000015385)	dkk3a (ENSSGRG00000015386) #7	usp47 (ENSSGRG00000015388) #8	CLEC3A (ENSSGRG00000015512)	vat1l (ENSSGRG00000015514) ##9	bco1 (ENSSGRG00000015516) ##12	bco1l (ENSSGRG00000015524) ##12	ipo7 (ENSSGRG00000015566) ##14	tmem41b (ENSSGRG00000015657) ##15	DENND5A (ENSSGRG00000015660) ##16	sinhcafl (ENSSGRG00000015782) #17	MMP15 (ENSSGRG00000015795) ##20	dhcr7 (ENSSGRG00000016611) ##21	nadsyn1 (ENSSGRG00000016645) ##22	tpcn2 (ENSSGRG00000016652) ##23	ccnd1 (ENSSGRG00000016653) ##24	ENSSGRG00000016672	fgf19 (ENSSGRG00000016673) ##26	fgf4 (ENSSGRG00000016674) ##27	fgf3 (ENSSGRG00000016675) ##28	ENSSGRG00000016676	SLC2A13 (ENSSGRG00000016677)	ENSSGRG00000016678	ENSSGRG00000016679	slco1d1 (ENSSGRG00000016692)	ENSSGRG00000017122	ENSSGRG00000017127	IAPP (ENSSGRG00000017128)	pyroxd1 (ENSSGRG00000017130)
Cyprininae	ANCESTRAL SPECIES	305	ENSGT00940000158780.f.d	ENSGT00390000000221.A.c #7	ENSGT00940000157223 #8	ENSGT00950000183186.B.a	ENSGT00940000159184.c ##9	ENSGT00390000013048.u.b ##10	ENSGT00950000182913.A.b.b.b ##12	ENSGT00950000182913.A.b.a.e ##12	ENSGT00940000154666.v ##14	ENSGT00940000156956.k #15	ENSGT00940000153678.a.b.c ##16	ENSGT00390000006485.d.j ##17	ENSGT00940000166567.k.a ##18	ENSGT00940000156939.e.a ##20	ENSGT00390000000417.a.b.j ##21	ENSGT00390000010152.h ##22	ENSGT00940000159763.d ##23	ENSGT00940000157816.a.b.i ##24	ENSGT00940000166897 #25	ENSGT00940000160601.n ##26	ENSGT00940000158825.c.h ##27	ENSGT00940000161128.i ##28	ENSGT01090000260003.a.a.f ##29	ENSGT00940000157182.g.b.t ##30	ENSGT00390000002105.b ##31	ENSGT00950000182973.b.a.f ##32	ENSGT00940000155628.r ##33	ENSGT00940000156684.t.a ##35	ENSGT00940000154617.B.c.b ##36	ENSGT00940000159572.a.a.a ##37	ENSGT00390000008748.b.g.b.b
Goldfish	MODERN SPECIES	47	MICAL2 (ENSCARG00000062739)	dkk3a (ENSCARG00000062906) #7	usp47 (ENSCARG00000063051) #8	CLEC3A (ENSCARG00000065246)	vat1l (ENSCARG00000065255) ##9	bola3 (ENSCARG00000065276) ##10	bco1 (ENSCARG00000065291) ##12	bco1l (ENSCARG00000065320) ##12	ipo7 (ENSCARG00000065426) ##14	tmem41b (ENSCARG00000065632) #15	DENND5A (ENSCARG00000065853) ##16	sinhcafl (ENSCARG00000068201) ##17	ENSCARG00000068238 ##18	MMP15 (ENSCARG00000068317) ##20	dhcr7 (ENSCARG00000068365) ##21	nadsyn1 (ENSCARG00000068389) ##22	tpcn2 (ENSCARG00000068478) ##23	ccnd1 (ENSCARG00000068731) ##24	lto1 (ENSCARG00000068739) #25	fgf19 (ENSCARG00000068743) ##26	fgf4 (ENSCARG00000068748) ##27	fgf3 (ENSCARG00000068754) ##28	zgc:153993 (ENSCARG00000068761) ##29	ano1a (ENSCARG00000068786) ##30	FADD (ENSCARG00000068856) ##31	pacsin3 (ENSCARG00000068872) ##32	csnk1g1 (ENSCARG00000068939) ##33	ENSCARG00000069020	rps17 (ENSCARG00000069033) #34	neo1a (ENSCARG00000069337) ##35	chrna7a (ENSCARG00000069888) ##36
Cyprininae_a	ANCESTRAL SPECIES	94	ENSGT00940000158780.f.d	ENSGT00390000000221.A.c.a ##7	ENSGT00940000157223.b ##8	ENSGT00950000183186.B.a	ENSGT00940000159184.c ##9	ENSGT00950000182913.A.b.b.b ##12	ENSGT00950000182913.A.b.a.e ##12	ENSGT00940000154666.v ##14	ENSGT00940000156956.k.a ##15	ENSGT00940000153678.a.b.c ##16	ENSGT00390000006485.d.j ##17	ENSGT00940000166567.k.a ##18	ENSGT00940000154285.b.a.b.c.b ##19	ENSGT00940000156939.e.a ##20	ENSGT00390000000417.a.b.j ##21	ENSGT00390000010152.h ##22	ENSGT00940000159763.d ##23	ENSGT00940000157816.a.b.i ##24	ENSGT00940000166897.a ##25	ENSGT00940000160601.n ##26	ENSGT00940000158825.c.h ##27	ENSGT00940000161128.i ##28	ENSGT01090000260003.a.a.f ##29	ENSGT00940000157182.g.b.t ##30	ENSGT00390000002105.b ##31	ENSGT00950000182973.b.a.f ##32	ENSGT00940000155628.r ##33	ENSGT00940000156684.t.a ##35	ENSGT00940000154617.B.c.b ##36	ENSGT00940000159572.a.a.a ##37	ENSGT00390000008748.b.g.b.b
Golden-line barbel	MODERN SPECIES	3743																nadsyn1 (ENSSGRG00000004884) ##22
Common carp reference	MODERN SPECIES		parvab (ENSCCRG00000031310)	MICAL2 (ENSCCRG00000031249)	dkk3a (ENSCCRG00000061308) ##7	usp47 (ENSCCRG00000020193) #8	vat1l (ENSCCRG00000080998) ##9	bco1 (ENSCCRG00000003349) ##12	bco1l (ENSCCRG00000063942) ##12	ipo7 (ENSCCRG00000011437) ##14	tmem41b (ENSCCRG00000053584) ##15	DENND5A (ENSCCRG00000043286) ##16	sinhcafl (ENSCCRG00000070183) ##17	ENSCCRG00000043085 ##18	ENSCCRG00000036225 ##19	ENSCCRG00000081502 ##20	dhcr7 (ENSCCRG00000068782) ##21	nadsyn1 (ENSCCRG00000061042) ##22	tpcn2 (ENSCCRG00000026408) ##23	CCND1 (ENSCCRG00000053902) ##24	lto1 (ENSCCRG00000056961) ##25	fgf19 (ENSCCRG00000061363) ##26	fgf4 (ENSCCRG00000030330) ##27	fgf3 (ENSCCRG00000078069) ##28	zgc:153993 (ENSCCRG00000080344) ##29	ano1a (ENSCCRG00000053149) ##30	pacsin3 (ENSCCRG00000009284) ##32	csnk1g1 (ENSCCRG00000080486) ##33	neo1a (ENSCCRG00000010056) ##35	ENSCCRG00000034969	chrna7a (ENSCCRG00000060541) ##36	ENSCCRG00000070394 ##37	trip4 (ENSCCRG00000050826)
Zebrafish	MODERN SPECIES	11	ENSDARG00000107511	tmem68 (ENSDARG00000086737)	xkr4 (ENSDARG00000104264)	ENSDARG00000090770	ENSDARG00000113057	buc (ENSDARG00000096095)	RNF152 (ENSDARG00000087782)	gad3 (ENSDARG00000055370)	mc4r (ENSDARG00000015515)	C2H5orf22 (ENSDARG00000011723)	cdh6 (ENSDARG00000014522)	ENSDARG00000110748 #19	ENSDARG00000114465 ##19	MMP15 (ENSDARG00000013072) #20	dhcr7 (ENSDARG00000103226) #21	nadsyn1 (ENSDARG00000101378) #22	cdh10a (ENSDARG00000055843)	cdh12a (ENSDARG00000078226)	cdh18a (ENSDARG00000061371)	cahz (ENSDARG00000011166)	dlgap1a (ENSDARG00000014280)	ptf1a (ENSDARG00000014479)	ENSDARG00000076896	ENSDARG00000031658	paxip1 (ENSDARG00000005606)	htr5aa (ENSDARG00000038869)	en2b (ENSDARG00000038868)	cnpy1 (ENSDARG00000003757)	ENSDARG00000094896	shhb (ENSDARG00000038867)	dnajb6a (ENSDARG00000004680)
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000157223 #8	ENSGT00950000183186.B.a	ENSGT00940000159184 #9	ENSGT00390000013048 #10	ENSGT00950000182913.A.b.b #11	ENSGT00950000182913.A.b.a #12	ENSGT00940000164905.g #13	ENSGT00940000154666 #14	ENSGT00940000156956 #15	ENSGT00940000153678.a.b #16	ENSGT00390000006485.d #17	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b #19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00950000182973.b.a #32	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a #37	ENSGT00390000008748.b.g.b
Channel catfish	MODERN SPECIES	1	vat1l (ENSIPUG00000020559) #9	bola3 (ENSIPUG00000020548) #10	bco1 (ENSIPUG00000020500) #11	bco1l (ENSIPUG00000020470) #12	ENSIPUG00000020353 #13	ipo7 (ENSIPUG00000020136) #14	tmem41b (ENSIPUG00000020102) #15	dennd5a (ENSIPUG00000019992) #16	sinhcafl (ENSIPUG00000019971) #17	ENSIPUG00000019962 #18	ENSIPUG00000019949 #19	ENSIPUG00000019940 #19	ENSIPUG00000019843 #19	Mmp15 (ENSIPUG00000019812) #20	dhcr7 (ENSIPUG00000019766) #21	NADSYN1 (ENSIPUG00000019689) #22	tpcn2 (ENSIPUG00000019633) #23	ENSIPUG00000014590	ccnd1 (ENSIPUG00000014564) #24	oraov1 (ENSIPUG00000014549) #25	fgf19 (ENSIPUG00000014545) #26	fgf4 (ENSIPUG00000014536) #27	fgf3 (ENSIPUG00000014520) #28	zgc:153993 (ENSIPUG00000014498) #29	ano1a (ENSIPUG00000014429) #30	fadd (ENSIPUG00000014390) #31	pacsin3 (ENSIPUG00000014353) #32	csnk1g1 (ENSIPUG00000014243) #33	ENSIPUG00000014229 ##34	neo1a (ENSIPUG00000013896) #35	scamp2l (ENSIPUG00000013855)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000157223 #8	ENSGT00950000183186.B.a	ENSGT00940000159184 #9	ENSGT00390000013048 #10	ENSGT00950000182913.A.b.b #11	ENSGT00950000182913.A.b.a #12	ENSGT00940000164905.g #13	ENSGT00940000154666 #14	ENSGT00940000156956 #15	ENSGT00940000153678.a.b #16	ENSGT00390000006485.d #17	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b #19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00950000182973.b.a #32	ENSGT00390000006548.b ##34	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a #37
Electric eel	MODERN SPECIES	9	dkk3a (ENSEEEG00000016323) #7	usp47 (ENSEEEG00000016329) #8	CLEC3A (ENSEEEG00000016692)	vat1l (ENSEEEG00000016693) #9	bola3 (ENSEEEG00000016696) #10	bco1 (ENSEEEG00000016701) #11	bco1l (ENSEEEG00000016734) #12	ENSEEEG00000016736 #13	ipo7 (ENSEEEG00000016768) #14	tmem41b (ENSEEEG00000017445) #15	DENND5A (ENSEEEG00000017492) #16	sinhcafl (ENSEEEG00000017992) #17	ENSEEEG00000017995 #18	MMP15 (ENSEEEG00000017998) #20	dhcr7 (ENSEEEG00000017999) #21	nadsyn1 (ENSEEEG00000018007) #22	tpcn2 (ENSEEEG00000018286) #23	ccnd1 (ENSEEEG00000018287) #24	lto1 (ENSEEEG00000018288) #25	fgf19 (ENSEEEG00000018290) #26	fgf4 (ENSEEEG00000018293) #27	fgf3 (ENSEEEG00000018294) #28	zgc:153993 (ENSEEEG00000018296) #29	ano1a (ENSEEEG00000018297) #30	FADD (ENSEEEG00000018298) #31	pacsin3 (ENSEEEG00000018299) #32	csnk1g1 (ENSEEEG00000018313) #33	ENSEEEG00000018367 ##34	ENSEEEG00000018375	neo1a (ENSEEEG00000018379) #35	scamp2l (ENSEEEG00000018382)
Characoidei	ANCESTRAL SPECIES	18														ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00950000182973.b.a #32	ENSGT00390000006548.b ##34	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a #37
Red-bellied piranha	MODERN SPECIES	161									ENSPNAG00000022356 #18	ENSPNAG00000022339 #18	ENSPNAG00000022293 #18	ENSPNAG00000022279 #19	ENSPNAG00000022261 ##19	MMP15 (ENSPNAG00000022228) #20	dhcr7 (ENSPNAG00000022163) #21	nadsyn1 (ENSPNAG00000022104) #22	tpcn2 (ENSPNAG00000022015) #23	ccnd1 (ENSPNAG00000006903) #24	lto1 (ENSPNAG00000021864) #25	fgf19 (ENSPNAG00000021853) #26	fgf4 (ENSPNAG00000021832) #27	fgf3 (ENSPNAG00000021821) #28	zgc:153993 (ENSPNAG00000021787) #29	ENSPNAG00000021755 #30	ENSPNAG00000021722 #30	csnk1g1 (ENSPNAG00000021696) #33	ENSPNAG00000021585 ##34	neo1a (ENSPNAG00000003684) #35	scamp2l (ENSPNAG00000021222)	myo9aa (ENSPNAG00000021097)	senp8 (ENSPNAG00000020966)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	851																ENSAMXG00000033181 #22	tpcn2 (ENSAMXG00000009719) #23
Mexicana tetra	MODERN SPECIES	1365															dhcr7 (ENSAMXG00000034790) #21	nadsyn1 (ENSAMXG00000009740) #22
Clupeiformes	ANCESTRAL SPECIES	369														ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.a.b #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00950000182973.b.a #32
Atlantic herring	MODERN SPECIES	22	ENSCHAG00000019765	ogfod1 (ENSCHAG00000019822)	vrk3 (ENSCHAG00000020607)	ENSCHAG00000020655	ENSCHAG00000020679	gfod2 (ENSCHAG00000020683)	tmed3 (ENSCHAG00000020686)	cog4 (ENSCHAG00000020705)	ENSCHAG00000021363	gtf2a2 (ENSCHAG00000021562)	ENSCHAG00000021663	ENSCHAG00000021671	ENSCHAG00000021683	VPS13C (ENSCHAG00000021835)	dhcr7 (ENSCHAG00000026031) #21	nadsyn1 (ENSCHAG00000026058) #22	tpcn2 (ENSCHAG00000026108) #23
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00950000183051.b.a	ENSGT00490000043434	ENSGT00530000063023.A.a	ENSGT00940000164020.c	ENSGT00950000183156.b	ENSGT00940000160143	ENSGT00730000110960.b	ENSGT00970000197355	ENSGT00940000158295	ENSGT00390000015672	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b #19	ENSGT00940000154285.b.a.a.b ##19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.b ##24	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT01020000230346.E	ENSGT01050000244888.b.b.a.a
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00530000063023.A.a	ENSGT00940000164020.c	ENSGT00950000183156.b	ENSGT00940000160143	ENSGT00730000110960.b	ENSGT00940000154285.b.a.a.b ##19	ENSGT00970000198111	ENSGT00390000005651.n	ENSGT00940000156113	ENSGT00940000158295	ENSGT00390000015672	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b #19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816.b ##24	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT01020000230346.E	ENSGT01050000244888.b.b.a.a
Salmoninae	ANCESTRAL SPECIES	361						ENSGT00730000110960.b.a.b.b	ENSGT00940000154285.b.a.a.b.e.a ##19	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g #18	ENSGT00940000154285.b.a.b.f #19	ENSGT00940000154285.b.a.a.b.f.b ##19	ENSGT00940000156939.e.c #20	ENSGT00390000000417.a.b.k #21	ENSGT00390000010152 #22	ENSGT00940000159763.p.a #23	ENSGT00940000157816.a.b.d #24	ENSGT00940000166897.c #25	ENSGT00390000017697.b.eb.a.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p	ENSGT00950000183176.b.e.w.a
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	76	ENSGT00530000063023.A.a.m	ENSGT00940000164020.c.d	ENSGT00950000183156.b.i	ENSGT00940000154285.b.b.c.b.b ##19	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.a.a	ENSGT00940000154285.b.a.a.b.e.a ##19	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g #18	ENSGT00940000154285.b.a.b.f #19	ENSGT00940000154285.b.a.a.b.f.b ##19	ENSGT00940000156939.e.c #20	ENSGT00390000000417.a.b.k #21	ENSGT00390000010152.a #22	ENSGT00940000159763.p.a #23	ENSGT00940000157816.a.b.d #24	ENSGT00940000166897.c #25	ENSGT00390000017697.b.eb.a.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a
Salmo	ANCESTRAL SPECIES	27	ENSGT00950000183051.b.a.d	ENSGT00490000043434.h	ENSGT00530000063023.A.a.m	ENSGT00950000183156.b.i	ENSGT00940000154285.b.b.c.b.b ##19	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.a.a	ENSGT00940000154285.b.a.a.b.e.a ##19	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g #18	ENSGT00940000154285.b.a.b.f #19	ENSGT00940000156939.e.c #20	ENSGT00390000000417.a.b.k #21	ENSGT00390000010152.a #22	ENSGT00940000159763.p.a #23	ENSGT00940000157816.a.b.d #24	ENSGT00940000166897.c #25	ENSGT00390000017697.b.eb.b.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000066468	ENSSSAG00000114655	ENSSSAG00000066529	ENSSSAG00000067434	DOK4 (ENSSSAG00000088848)	ccdc102a (ENSSSAG00000067556)	adgrg1 (ENSSSAG00000067566) ##19	ENSSSAG00000067569	slc7a6 (ENSSSAG00000067592)	slc7a6os (ENSSSAG00000068214)	ENSSSAG00000068220 #20	ENSSSAG00000068215 #18	ENSSSAG00000093989 #19	ENSSSAG00000105034	dhcr7 (ENSSSAG00000090510) #21	nadsyn1 (ENSSSAG00000068295) #22	ENSSSAG00000102017	tpcn2 (ENSSSAG00000070595) #23	ENSSSAG00000108373 #24	lto1 (ENSSSAG00000071982) #25	ENSSSAG00000071996	ENSSSAG00000072016	ENSSSAG00000066114	RNF166 (ENSSSAG00000072323)	ctu2 (ENSSSAG00000072330)	PIEZO1 (ENSSSAG00000072401)	CDT1 (ENSSSAG00000072506)	aprt (ENSSSAG00000111408)	galns (ENSSSAG00000072515)	PABPN1L (ENSSSAG00000072555)	trappc2l (ENSSSAG00000072525)
River trout	MODERN SPECIES	3	tshz3b (ENSSTUG00000022482)	ZNF507 (ENSSTUG00000022485)	DPY19L3 (ENSSTUG00000022506)	ENSSTUG00000000947	ENSSTUG00000001464	ENSSTUG00000001811 ##19	DOK4 (ENSSTUG00000001853)	ccdc102a (ENSSTUG00000001872)	adgrg1 (ENSSTUG00000001900) ##19	ENSSTUG00000001908	slc7a6 (ENSSTUG00000001924)	slc7a6os (ENSSTUG00000002070)	ENSSTUG00000002082 #19	MMP15 (ENSSTUG00000002121) #20	dhcr7 (ENSSTUG00000002389) #21	nadsyn1 (ENSSTUG00000002449) #22	tpcn2 (ENSSTUG00000002487) #23	ENSSTUG00000002558	ccnd1 (ENSSTUG00000002561) #24	lto1 (ENSSTUG00000002591) #25	ciao2b (ENSSTUG00000002626)	ENSSTUG00000002748	ENSSTUG00000004999	RNF166 (ENSSTUG00000005006)	ctu2 (ENSSTUG00000005038)	PIEZO1 (ENSSTUG00000005320)	CDT1 (ENSSTUG00000006636)	aprt (ENSSTUG00000006682)	galns (ENSSTUG00000006687)	trappc2l (ENSSTUG00000006731)	PABPN1L (ENSSTUG00000006789)
Oncorhynchus	ANCESTRAL SPECIES	32	ENSGT00530000063023.A.a.m	ENSGT00940000164020.c.d	ENSGT00950000183156.b.i	ENSGT00940000160143.d	ENSGT00730000110960.b.b	ENSGT00730000110960.b.a.b.b	ENSGT00940000154285.b.a.a.b.e.a ##19	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g #18	ENSGT00940000154285.b.a.b.f #19	ENSGT00940000154285.b.a.a.b.f.b ##19	ENSGT00940000156939.e.c #20	ENSGT00390000000417.a.b.k #21	ENSGT00390000010152.a #22	ENSGT00940000159763.p.a #23	ENSGT00940000157816.a.b.d #24	ENSGT00940000166897.c #25	ENSGT00390000017697.b.eb.a.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00950000182909.b.b.b.r	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b
Rainbow trout	MODERN SPECIES	18	ZNF507 (ENSOMYG00000036665)	DPY19L3 (ENSOMYG00000036712)	ENSOMYG00000036873	ENSOMYG00000073257	ENSOMYG00000061731	ENSOMYG00000036970	DOK4 (ENSOMYG00000037280)	ENSOMYG00000037300	adgrg1 (ENSOMYG00000037317) ##19	ENSOMYG00000037340	slc7a6 (ENSOMYG00000037439)	slc7a6os (ENSOMYG00000037648)	ENSOMYG00000053770	ENSOMYG00000037718 #20	ENSOMYG00000037739 #21	nadsyn1 (ENSOMYG00000037829) #22	tpcn2 (ENSOMYG00000038011) #23	ENSOMYG00000066369	ENSOMYG00000038167 #24	lto1 (ENSOMYG00000038146) #25	ciao2b (ENSOMYG00000038177)	ENSOMYG00000038855	ENSOMYG00000041324	RNF166 (ENSOMYG00000054129)	ctu2 (ENSOMYG00000041336)	PIEZO1 (ENSOMYG00000041383)	CDT1 (ENSOMYG00000041432)	aprt (ENSOMYG00000041443)	galns (ENSOMYG00000041454)	trappc2l (ENSOMYG00000041458)	PABPN1L (ENSOMYG00000041475)
Oncorhynchus_a	ANCESTRAL SPECIES	28	ENSGT00490000043434.h	ENSGT00530000063023.A.a.n.a.a.b	ENSGT00940000164020.c.d	ENSGT00950000183156.b.i	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.b	ENSGT00940000154285.b.a.a.b.e.a ##19	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g #18	ENSGT00940000154285.b.a.b.f #19	ENSGT00940000154285.b.a.a.b.f.b ##19	ENSGT00940000156939.e.c #20	ENSGT00390000000417.a.b.k #21	ENSGT00390000010152.a #22	ENSGT00940000159763.p.a #23	ENSGT00940000157816.a.b.d #24	ENSGT00940000166897.c #25	ENSGT00390000017697.b.eb.a.a	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005015072	zgc:162297 (ENSOTSG00005015076)	ccne1 (ENSOTSG00005015082)	ZNF536 (ENSOTSG00005015086)	ENSOTSG00005015089	DOK4 (ENSOTSG00005015423)	ENSOTSG00005015424	ccdc102a (ENSOTSG00005015425)	adgrg1 (ENSOTSG00005015426) ##19	ENSOTSG00005015429	slc7a6 (ENSOTSG00005015442)	slc7a6os (ENSOTSG00005016603)	ENSOTSG00005016604 #18	MMP15 (ENSOTSG00005016605) #20	dhcr7 (ENSOTSG00005016606) #21	nadsyn1 (ENSOTSG00005016607) #22	tpcn2 (ENSOTSG00005016612) #23	ccnd1 (ENSOTSG00005016695) #24	lto1 (ENSOTSG00005016697) #25	ciao2b (ENSOTSG00005016700)	ENSOTSG00005016709	ACSF3 (ENSOTSG00005019787)	cdh15 (ENSOTSG00005019833)	SPG7 (ENSOTSG00005019864)	ANKRD11 (ENSOTSG00005023481)	SLC22A31 (ENSOTSG00005023520)	dpep1 (ENSOTSG00005023522)	sult5a1 (ENSOTSG00005023526)	hpxa (ENSOTSG00005023528)	ENSOTSG00005023530	ENSOTSG00005023531
Salmoninae_a	ANCESTRAL SPECIES	47	ENSGT00490000043434.g	ENSGT00530000063023.A.a.n.a.a	ENSGT00940000164020.c.c	ENSGT00950000183156.b.j	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b ##19	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h #18	ENSGT00940000154285.b.a.b.e #19	ENSGT00940000154285.b.a.a.b.f.a ##19	ENSGT00940000156939.e.d #20	ENSGT00390000000417.a.b.l #21	ENSGT00390000010152.b #22	ENSGT00940000159763.p.b #23	ENSGT00940000157816.a.b.c #24	ENSGT00940000166897.d #25	ENSGT00940000160601 #26	ENSGT00940000158825.c.a #27	ENSGT00940000161128.e.a #28	ENSGT01090000260003.a.a.a.a #29	ENSGT00940000157182.g.b.a #30	ENSGT00390000002105.e #31	ENSGT00940000163716.c.a.a.b	ENSGT00530000063956.b.b.e	ENSGT00940000158005.g	ENSGT00940000162264.d	ENSGT00940000160432.c.a.b	ENSGT00940000159573.f.b
Salmo	ANCESTRAL SPECIES	30	ENSGT00530000063023.A.a.n.b	ENSGT00940000164020.c.c	ENSGT00950000183156.b.j	ENSGT00940000154285.b.b.c.b.a ##19	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b ##19	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h #18	ENSGT00940000154285.b.a.b.e #19	ENSGT00940000154285.b.a.a.b.f.a ##19	ENSGT00940000156939.e.d #20	ENSGT00390000000417.a.b.l #21	ENSGT00390000010152.b #22	ENSGT00940000159763.p.b #23	ENSGT00940000157816.a.b.c #24	ENSGT00940000166897.d #25	ENSGT00940000160601 #26	ENSGT00940000158825.c.a #27	ENSGT00940000161128.e.a #28	ENSGT01090000260003.a.a.a.a #29	ENSGT00940000157182.g.b.a #30	ENSGT00390000002105.e #31	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.a.k	ENSGT00940000161051.a.a.b.b.b.a.p	ENSGT00940000154856.A.a.c.a.b.a.b.b	ENSGT00940000154856.A.a.c.a.a.l	ENSGT00390000000020.b.y
River trout	DUPLICATION
River trout	MODERN SPECIES	21	DPY19L3 (ENSSTUG00000004467)	ENSSTUG00000004928	ENSSTUG00000005103	ENSSTUG00000005194 ##19	DOK4 (ENSSTUG00000005269)	ccdc102a (ENSSTUG00000005286)	adgrg1 (ENSSTUG00000005321) ##19	ENSSTUG00000005343	slc7a6 (ENSSTUG00000005413)	slc7a6os (ENSSTUG00000005922)	ENSSTUG00000005933 #19	ENSSTUG00000005947 ##19	MMP15 (ENSSTUG00000005966) #20	dhcr7 (ENSSTUG00000006202) #21	nadsyn1 (ENSSTUG00000006256) #22	ENSSTUG00000006278 #22	tpcn2 (ENSSTUG00000006299) #23	lto1 (ENSSTUG00000006471) #25	fgf19 (ENSSTUG00000006481) #26	fgf4 (ENSSTUG00000006483) #27	fgf3 (ENSSTUG00000006493) #28	zgc:153993 (ENSSTUG00000006499) #29	ENSSTUG00000006505	ano1a (ENSSTUG00000006537) #30	FADD (ENSSTUG00000006967) #31	ENSSTUG00000006987	ENSSTUG00000007133	c6ast1 (ENSSTUG00000007607)	mtch2 (ENSSTUG00000007691)	psmc3 (ENSSTUG00000007987)	aplnr2 (ENSSTUG00000008041)
Atlantic salmon	MODERN SPECIES	18	znf507 (ENSSSAG00000057606)	DPY19L3 (ENSSSAG00000092559)	ENSSSAG00000056205	ENSSSAG00000053637	ENSSSAG00000092140 ##19	ENSSSAG00000053606 ##19	DOK4 (ENSSSAG00000067446)	ENSSSAG00000053582	adgrg1 (ENSSSAG00000088527) ##19	slc7a6os (ENSSSAG00000053552)	slc7a6 (ENSSSAG00000053557)	ENSSSAG00000053548 #18	ENSSSAG00000053530 ##19	ENSSSAG00000053435 #20	ENSSSAG00000086305 #21	nadsyn1 (ENSSSAG00000053303) #22	tpcn2 (ENSSSAG00000053215) #23	ccnd1 (ENSSSAG00000082383) #24	lto1 (ENSSSAG00000053185) #25	fgf4 (ENSSSAG00000053180) #27	fgf3 (ENSSSAG00000109242) #28	BAX (ENSSSAG00000053164) #29	ano1a (ENSSSAG00000043408) #30	ENSSSAG00000103946	ENSSSAG00000043164	hce2 (ENSSSAG00000043141)	ENSSSAG00000084746	lce (ENSSSAG00000112923)	ENSSSAG00000033317	mtch2 (ENSSSAG00000043064)	ENSSSAG00000042508
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00530000063023.A.a.n.a.a.a	ENSGT00940000164020.c.c	ENSGT00950000183156.b.j	ENSGT00940000154285.b.b.c.a ##19	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b ##19	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h #18	ENSGT00940000154285.b.a.b.e #19	ENSGT00940000154285.b.a.a.b.f.a ##19	ENSGT00940000156939.e.d #20	ENSGT00390000000417.a.b.l #21	ENSGT00390000010152.b #22	ENSGT00940000159763.p.b #23	ENSGT00940000157816.a.b.c #24	ENSGT00940000166897.d #25	ENSGT00940000160601 #26	ENSGT00940000158825.c.a #27	ENSGT00940000161128.e.a #28	ENSGT01090000260003.a.a.a.a #29	ENSGT00940000157182.g.b.a #30	ENSGT00390000002105.e #31	ENSGT00940000163716.c.a.a.b.z	ENSGT00940000163716.c.a.b	ENSGT00390000000020.b.y	ENSGT01020000230346.E.a	ENSGT01050000244888.b.b.a.a	ENSGT00730000111696.a.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	27	DPY19L3 (ENSOMYG00000002695)	ENSOMYG00000049532	ENSOMYG00000002503	ENSOMYG00000002394 ##19	DOK4 (ENSOMYG00000002230)	ccdc102a (ENSOMYG00000002197)	adgrg1 (ENSOMYG00000002130) ##19	slc7a6 (ENSOMYG00000002068)	slc7a6os (ENSOMYG00000001946)	ENSOMYG00000001907 #18	ENSOMYG00000001862 #19	ENSOMYG00000001834 ##19	ENSOMYG00000001758 #20	ENSOMYG00000061042	dhcr7 (ENSOMYG00000001733) #21	nadsyn1 (ENSOMYG00000001674) #22	ENSOMYG00000001647 #22	tpcn2 (ENSOMYG00000001514) #23	ccnd1 (ENSOMYG00000001255) #24	fgf19 (ENSOMYG00000001235) #26	fgf4 (ENSOMYG00000001224) #27	fgf3 (ENSOMYG00000001218) #28	zgc:153993 (ENSOMYG00000001204) #29	ano1a (ENSOMYG00000016890) #30	FADD (ENSOMYG00000016741) #31	ENSOMYG00000016692	ENSOMYG00000016675	ENSOMYG00000016626	ENSOMYG00000016511	aplnr2 (ENSOMYG00000070050)	cd59 (ENSOMYG00000062192)
Chinook salmon	DUPLICATION
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	22	ENSOKIG00005005045	ENSOKIG00005004972 ##19	ENSOKIG00005004968	DOK4 (ENSOKIG00005004960)	ENSOKIG00005004950	ccdc102a (ENSOKIG00005013582)	adgrg1 (ENSOKIG00005013548) ##19	ENSOKIG00005013526	slc7a6 (ENSOKIG00005013426)	slc7a6os (ENSOKIG00005013387)	ENSOKIG00005013356 #18	ENSOKIG00005013338 #19	ENSOKIG00005013324 ##19	MMP15 (ENSOKIG00005013166) #20	dhcr7 (ENSOKIG00005013114) #21	nadsyn1 (ENSOKIG00005013082) #22	ENSOKIG00005013058 #22	tpcn2 (ENSOKIG00005011812) #23	ccnd1 (ENSOKIG00005011664) #24	lto1 (ENSOKIG00005011643) #25	fgf19 (ENSOKIG00005011633) #26	fgf4 (ENSOKIG00005011614) #27	fgf3 (ENSOKIG00005011598) #28	zgc:153993 (ENSOKIG00005011583) #29	ano1a (ENSOKIG00005011383) #30	FADD (ENSOKIG00005011355) #31	ENSOKIG00005011338	ENSOKIG00005011284	ENSOKIG00005011213	MTCH2 (ENSOKIG00005010764)	PSMC3 (ENSOKIG00005010496)
Coho salmon	MODERN SPECIES	22	ENSOKIG00005004972 ##19	ENSOKIG00005004968	DOK4 (ENSOKIG00005004960)	ENSOKIG00005004950	ccdc102a (ENSOKIG00005013582)	adgrg1 (ENSOKIG00005013548) ##19	ENSOKIG00005013526	slc7a6 (ENSOKIG00005013426)	slc7a6os (ENSOKIG00005013387)	ENSOKIG00005013356 #18	ENSOKIG00005013338 #19	ENSOKIG00005013324 ##19	MMP15 (ENSOKIG00005013166) #20	dhcr7 (ENSOKIG00005013114) #21	nadsyn1 (ENSOKIG00005013082) #22	ENSOKIG00005013058 #22	tpcn2 (ENSOKIG00005011812) #23	ccnd1 (ENSOKIG00005011664) #24	lto1 (ENSOKIG00005011643) #25	fgf19 (ENSOKIG00005011633) #26	fgf4 (ENSOKIG00005011614) #27	fgf3 (ENSOKIG00005011598) #28	zgc:153993 (ENSOKIG00005011583) #29	ano1a (ENSOKIG00005011383) #30	FADD (ENSOKIG00005011355) #31	ENSOKIG00005011338	ENSOKIG00005011284	ENSOKIG00005011213	MTCH2 (ENSOKIG00005010764)	PSMC3 (ENSOKIG00005010496)	aplnr2 (ENSOKIG00005010472)
Huchen	MODERN SPECIES	1133						ccdc102a (ENSHHUG00000021512)	adgrg1 (ENSHHUG00000021523) ##19	ENSHHUG00000021546	ENSHHUG00000021588	slc7a6os (ENSHHUG00000021592)	ENSHHUG00000021608 #18	ENSHHUG00000021616 #19	ENSHHUG00000021628 ##19	MMP15 (ENSHHUG00000021654) #20	dhcr7 (ENSHHUG00000021696) #21	nadsyn1 (ENSHHUG00000021759) #22	tpcn2 (ENSHHUG00000021792) #23
Northern pike	MODERN SPECIES	1	DPY19L3 (ENSELUG00000020011)	ENSELUG00000020056	ENSELUG00000020120	ENSELUG00000020137 #19	DOK4 (ENSELUG00000020178)	ccdc102a (ENSELUG00000020229)	adgrg1 (ENSELUG00000020340) ##19	ENSELUG00000020358	ENSELUG00000033053	slc7a6 (ENSELUG00000020394)	slc7a6os (ENSELUG00000020417)	ENSELUG00000020428 #18	ENSELUG00000020444 ##19	MMP15 (ENSELUG00000000929) #20	dhcr7 (ENSELUG00000021170) #21	nadsyn1 (ENSELUG00000021225) #22	tpcn2 (ENSELUG00000021249) #23	ccnd1 (ENSELUG00000021257) #24	lto1 (ENSELUG00000021306) #25	ENSELUG00000026883	fgf19 (ENSELUG00000021326) #26	fgf4 (ENSELUG00000021335) #27	fgf3 (ENSELUG00000021345) #28	zgc:153993 (ENSELUG00000021385) #29	ano1a (ENSELUG00000021508) #30	fadd (ENSELUG00000021554) #31	ENSELUG00000021737	ENSELUG00000021796	psmc3 (ENSELUG00000021855)	mtch2 (ENSELUG00000021936)	c6ast1 (ENSELUG00000022020)
Acanthomorphata	ANCESTRAL SPECIES	195									ENSGT00940000158295	ENSGT00390000015672	ENSGT00940000166567 #18	ENSGT00940000154285.b.a.b #19	ENSGT00940000154285.b.a.a.b ##19	ENSGT00940000156939.e #20	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728	ENSGT00390000009077.c	ENSGT00940000171971	ENSGT00390000006020	ENSGT00530000063829.B	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a	ENSGT00490000043434	ENSGT00530000063023.A.a	ENSGT00940000164020.c	ENSGT00950000183156.b
Tiger tail seahorse	MODERN SPECIES	283												txlng (ENSHCOG00000001399)	BNC1 (ENSHCOG00000001421)	DOK4 (ENSHCOG00000001439)	ENSHCOG00000001445	nadsyn1 (ENSHCOG00000001454) #22	tpcn2 (ENSHCOG00000001468) #23	c6ast1 (ENSHCOG00000001496)	ENSHCOG00000001505
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT01030000235123	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105 #31
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000167699	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.a	ENSGT00390000000020.b	ENSGT00390000006876
Seriola	ANCESTRAL SPECIES	100	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23
Greater amberjack	MODERN SPECIES	1	ENSSDUG00000013555	gjd6 (ENSSDUG00000013565)	sh3gl3a (ENSSDUG00000013579)	ENSSDUG00000013594	BNC1 (ENSSDUG00000013604)	HDGFL3 (ENSSDUG00000013618)	ENSSDUG00000013639	ENSSDUG00000013675	txlng (ENSSDUG00000013678)	ccdc102a (ENSSDUG00000013690)	ENSSDUG00000013719	ENSSDUG00000013727	DOK4 (ENSSDUG00000013737)	ENSSDUG00000013752	ENSSDUG00000013762	nadsyn1 (ENSSDUG00000013776) #22	tpcn2 (ENSSDUG00000013829) #23	ENSSDUG00000013852
Barramundi perch	MODERN SPECIES	148	mex3b (ENSLCAG00010008038)	EFL1 (ENSLCAG00010008094)	ENSLCAG00010008206	lmnl3 (ENSLCAG00010008250)	ENSLCAG00010008261	gjd6 (ENSLCAG00010008265)	sh3gl3a (ENSLCAG00010008279)	BNC1 (ENSLCAG00010008309)	TSSK2 (ENSLCAG00010008320)	HDGFL3 (ENSLCAG00010008327)	rbb4l (ENSLCAG00010008350)	txlng (ENSLCAG00010008392)	ccdc102a (ENSLCAG00010008410)	ENSLCAG00010008428	DOK4 (ENSLCAG00010008432)	nadsyn1 (ENSLCAG00010008456) #22	tpcn2 (ENSLCAG00010008474) #23	pop4 (ENSLCAG00010008479)	PLEKHF1 (ENSLCAG00010008483)	PCSK6 (ENSLCAG00010008500)	ENSLCAG00010008563	zgc:153993 (ENSLCAG00010008564) #29	ano1a (ENSLCAG00010008602) #30	ENSLCAG00010008795 #31	c6ast4 (ENSLCAG00010008800)	ENSLCAG00010008809	ENSLCAG00010008814
Pleuronectoidei	ANCESTRAL SPECIES	70									ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.a.j.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Tongue sole	MODERN SPECIES	15	uqcrfs1 (ENSCSEG00000007223)	ENSCSEG00000007236	KBTBD13 (ENSCSEG00000007265)	ENSCSEG00000007277	spg21 (ENSCSEG00000007309)	ENSCSEG00000007336	shcbp1 (ENSCSEG00000007341)	ANO9 (ENSCSEG00000007359)	sh3gl3a (ENSCSEG00000007417)	BNC1 (ENSCSEG00000007441)	HDGFL3 (ENSCSEG00000007457)	rbb4l (ENSCSEG00000007481)	txlng (ENSCSEG00000007505)	ccdc102a (ENSCSEG00000007518)	DOK4 (ENSCSEG00000007540)	nadsyn1 (ENSCSEG00000007556) #22	tpcn2 (ENSCSEG00000007591) #23	CTTN (ENSCSEG00000007610)	ENSCSEG00000007629	ppfia1 (ENSCSEG00000007640)	ENSCSEG00000007874	ENSCSEG00000007884	arfgap2 (ENSCSEG00000007898)	pex16 (ENSCSEG00000007925)	cars1 (ENSCSEG00000007939)	crybgx (ENSCSEG00000007996)	tipin (ENSCSEG00000008013)	dis3l (ENSCSEG00000008022)	gjd6 (ENSCSEG00000008036)	ENSCSEG00000008045	lmnl3 (ENSCSEG00000008077)
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Zig-zag eel	MODERN SPECIES	17	STARD5 (ENSMAMG00000011283)	TMC3 (ENSMAMG00000011291)	mex3b (ENSMAMG00000011325)	EFL1 (ENSMAMG00000011336)	ENSMAMG00000011366	ENSMAMG00000011383	ENSMAMG00000011396	gjd6 (ENSMAMG00000026342)	sh3gl3a (ENSMAMG00000011464)	ENSMAMG00000011502	ENSMAMG00000011517	ENSMAMG00000011524	ENSMAMG00000011546	ENSMAMG00000011553	ENSMAMG00000011566	ENSMAMG00000011586 #22	ENSMAMG00000011631 #23	ENSMAMG00000011716	ENSMAMG00000011757	ENSMAMG00000011769
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT01090000260003.a.a #29	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Climbing perch	MODERN SPECIES	16	ENSATEG00000005293	ENSATEG00000027189	ENSATEG00000027538	ENSATEG00000012520	ENSATEG00000012542	gjd6 (ENSATEG00000027832)	sh3gl3a (ENSATEG00000012578)	ENSATEG00000012626	ENSATEG00000012647	ENSATEG00000027945	HDGFL3 (ENSATEG00000026674)	ENSATEG00000012737	ENSATEG00000012802	ENSATEG00000012814	ENSATEG00000012881	ENSATEG00000012923 #22	ENSATEG00000013005 #23	ENSATEG00000013028	ENSATEG00000029217
Siamese fighting fish	MODERN SPECIES	14	CIB2 (ENSBSLG00000008126)	idh3a (ENSBSLG00000007611)	rab8b (ENSBSLG00000007569)	ctrb.2 (ENSBSLG00000007558)	ENSBSLG00000007555	ENSBSLG00000007279	ENSBSLG00000007276	ENSBSLG00000007273	lmnl3 (ENSBSLG00000007264)	BNC1 (ENSBSLG00000007260)	HDGFL3 (ENSBSLG00000007256)	rbb4l (ENSBSLG00000007158)	txlng (ENSBSLG00000006717)	ccdc102a (ENSBSLG00000006450)	DOK4 (ENSBSLG00000006359)	nadsyn1 (ENSBSLG00000005479) #22	tpcn2 (ENSBSLG00000004940) #23	pop4 (ENSBSLG00000004813)	PLEKHF1 (ENSBSLG00000004790)	RWDD3 (ENSBSLG00000004768)	zgc:153993 (ENSBSLG00000004748) #29	ano1a (ENSBSLG00000004061) #30	ENSBSLG00000003603 #31	c6ast4 (ENSBSLG00000003592)	ENSBSLG00000002983	c6ast1 (ENSBSLG00000002960)	ENSBSLG00000002954	ENSBSLG00000002952	mtch2 (ENSBSLG00000002875)	ankdd1a (ENSBSLG00000002787)	ENSBSLG00000002769
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000167699	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30
Tetraodontidae	ANCESTRAL SPECIES	106												ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.a	ENSGT00390000002105 #31	ENSGT01090000260003.a.a #29	ENSGT00940000160601 #26
Fugu	DUPLICATION
Fugu	MODERN SPECIES	4	cplx3a (ENSTRUG00000030806)	ENSTRUG00000021358	CSK (ENSTRUG00000030721)	ENSTRUG00000028152	cyp1a (ENSTRUG00000032673)	CYP1A1 (ENSTRUG00000000989)	ENSTRUG00000032904	ccne1 (ENSTRUG00000001296)	ENSTRUG00000031408	ccne1 (ENSTRUG00000001834)	HDGFL3 (ENSTRUG00000029897)	ENSTRUG00000000593	txlng (ENSTRUG00000002592)	ENSTRUG00000026591	ccdc102a (ENSTRUG00000003308)	nadsyn1 (ENSTRUG00000032771) #22	tpcn2 (ENSTRUG00000028617) #23	pop4 (ENSTRUG00000002477)	ENSTRUG00000025121	ENSTRUG00000029418	mtch2 (ENSTRUG00000027469)	ENSTRUG00000033308	ENSTRUG00000027773	nadsyn1 (ENSTRUG00000006650) #22	tpcn2 (ENSTRUG00000030837) #23	pop4 (ENSTRUG00000027699)	ENSTRUG00000026384	ENSTRUG00000026439	mtch2 (ENSTRUG00000027552)	ENSTRUG00000007161
Tetraodon	MODERN SPECIES	26	mesd (ENSTNIG00000006696)	TLNRD1 (ENSTNIG00000006697)	IL16 (ENSTNIG00000006698)	STARD5 (ENSTNIG00000006699)	TMC3 (ENSTNIG00000006700)	mex3b (ENSTNIG00000003398)	EFL1 (ENSTNIG00000003399)	lmnl3 (ENSTNIG00000003400)	gjd6 (ENSTNIG00000003401)	sh3gl3a (ENSTNIG00000003402)	BNC1 (ENSTNIG00000003403)	ENSTNIG00000003404	RBBP7 (ENSTNIG00000003405)	txlng (ENSTNIG00000003406)	ccdc102a (ENSTNIG00000003407)	nadsyn1 (ENSTNIG00000003408) #22	tpcn2 (ENSTNIG00000003409) #23	pop4 (ENSTNIG00000006401)	ANO9 (ENSTNIG00000006400)	ENSTNIG00000006399	ENSTNIG00000007027	mtch2 (ENSTNIG00000007028)	ENSTNIG00000004524	ENSTNIG00000006100	ENSTNIG00000006101	ENSTNIG00000005750	zgc:153993 (ENSTNIG00000014198) #29	fgf3 (ENSTNIG00000014197) #28	ccnd1 (ENSTNIG00000014196) #24	uqcrfs1 (ENSTNIG00000014195)	ENSTNIG00000001091
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000167699	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000166403	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000167699	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30
Perciformes	ANCESTRAL SPECIES	54			ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00390000000954	ENSGT00940000159506
Perciformes_a	ANCESTRAL SPECIES	71			ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506
Pike perch	MODERN SPECIES	93	ENSSLUG00000002327	ENSSLUG00000002317	ENSSLUG00000002247	lmnl3 (ENSSLUG00000002210)	ENSSLUG00000002203	gjd6 (ENSSLUG00000002195)	sh3gl3a (ENSSLUG00000002164)	BNC1 (ENSSLUG00000002144)	ENSSLUG00000002141	TSSK2 (ENSSLUG00000002131)	HDGFL3 (ENSSLUG00000002126)	rbb4l (ENSSLUG00000002055)	txlng (ENSSLUG00000001881)	ccdc102a (ENSSLUG00000001818)	DOK4 (ENSSLUG00000001797)	nadsyn1 (ENSSLUG00000001687) #22	tpcn2 (ENSSLUG00000025540) #23	pop4 (ENSSLUG00000025506)	PLEKHF1 (ENSSLUG00000025502)	PLEKHF1 (ENSSLUG00000025498)	PCSK6 (ENSSLUG00000025426)	ENSSLUG00000025382	ENSSLUG00000025379	ENSSLUG00000025376	ankdd1a (ENSSLUG00000025375)	ENSSLUG00000025373	mtch2 (ENSSLUG00000025363)	ENSSLUG00000025361	ENSSLUG00000025359	ENSSLUG00000025357	ENSSLUG00000025347
Lumpfish	MODERN SPECIES	18	zgc:113276 (ENSCLMG00005001032)	ENSCLMG00005001025	ace2 (ENSCLMG00005001019)	NHS (ENSCLMG00005001011)	ENSCLMG00005001006	rs1a (ENSCLMG00005001003)	ppef1 (ENSCLMG00005001001)	ENSCLMG00005000999	ENSCLMG00005000998	ENSCLMG00005000997	ENSCLMG00005000995	ENSCLMG00005000994	PHKA2 (ENSCLMG00005000984)	ap1s2 (ENSCLMG00005000950)	ZRSR2 (ENSCLMG00005000944)	nadsyn1 (ENSCLMG00005000929) #22	tpcn2 (ENSCLMG00005000927) #23	pop4 (ENSCLMG00005000926)	PLEKHF1 (ENSCLMG00005000924)	ENSCLMG00005000922	PCSK6 (ENSCLMG00005000916)	DOK4 (ENSCLMG00005000915)	ccdc102a (ENSCLMG00005000914)	txlng (ENSCLMG00005000905)	rbb4l (ENSCLMG00005000862)	HDGFL3 (ENSCLMG00005000852)	LSM14A (ENSCLMG00005000848)	ENSCLMG00005000847	ENSCLMG00005000844	KCTD15 (ENSCLMG00005000843)	CHST8 (ENSCLMG00005000840)
Stickleback	MODERN SPECIES	1	ulk3 (ENSGACG00000014651)	ENSGACG00000014631	tm2d3 (ENSGACG00000014624)	larp6a (ENSGACG00000014622)	ENSGACG00000014619	THSD4 (ENSGACG00000014615)	pepd (ENSGACG00000014582)	KCTD15 (ENSGACG00000014575)	LSM14A (ENSGACG00000014572)	HDGFL3 (ENSGACG00000014568)	rbb4l (ENSGACG00000014552)	txlng (ENSGACG00000014550)	ENSGACG00000014549	ccdc102a (ENSGACG00000014543)	DOK4 (ENSGACG00000014541)	nadsyn1 (ENSGACG00000014530) #22	tpcn2 (ENSGACG00000014526) #23	ENSGACG00000014524	ENSGACG00000014522	pop4 (ENSGACG00000014510)	ENSGACG00000014509	PLEKHF1 (ENSGACG00000014507)	ENSGACG00000014504	PCSK6 (ENSGACG00000014499)	ENSGACG00000014495	ENSGACG00000014489	ankdd1a (ENSGACG00000014482)	GAS8 (ENSGACG00000014479)	mtch2 (ENSGACG00000014422)	c6ast4 (ENSGACG00000014420)	ENSGACG00000014415
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30
Gilthead seabream	MODERN SPECIES	8	pabpc1a (ENSSAUG00010009407)	ywhabl (ENSSAUG00010009404)	ZNF706 (ENSSAUG00010009400)	grhl2a (ENSSAUG00010009391)	ncalda (ENSSAUG00010009385)	id4 (ENSSAUG00010009383)	cep76 (ENSSAUG00010009129)	ptpn2a (ENSSAUG00010009121)	seh1l (ENSSAUG00010009113)	CEP192 (ENSSAUG00010009092)	ldlrad4b (ENSSAUG00010009084)	fam210ab (ENSSAUG00010011697)	pop4 (ENSSAUG00010011696)	PLEKHF1 (ENSSAUG00010011695)	PCSK6 (ENSSAUG00010011419)	nadsyn1 (ENSSAUG00010011395) #22	MC5R (ENSSAUG00010011391)	mc2r (ENSSAUG00010011389)	zdhhc3a (ENSSAUG00010011387)	zgc:77056 (ENSSAUG00010011386)	stt3b (ENSSAUG00010010949)	ENSSAUG00010010940	ENSSAUG00010010937	ADGRB1 (ENSSAUG00010009657)	cep162 (ENSSAUG00010009598)	cyb5r4 (ENSSAUG00010009581)	sim1a (ENSSAUG00010009527)	ASCC3 (ENSSAUG00010009349)	GRIK2 (ENSSAUG00010007367)	ENSSAUG00010007322	ENSSAUG00010007320
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30
European seabass	MODERN SPECIES	18	EFL1 (ENSDLAG00005001940)	ENSDLAG00005001806	ENSDLAG00005001743	ENSDLAG00005001729	gjd6 (ENSDLAG00005001722)	sh3gl3a (ENSDLAG00005001676)	ENSDLAG00005001672	ENSDLAG00005001667	ENSDLAG00005001658	ENSDLAG00005001322	ENSDLAG00005030593	ENSDLAG00005021908	ENSDLAG00005033808	ENSDLAG00005021901	ENSDLAG00005026386	ENSDLAG00005021831 #22	ENSDLAG00005021794 #23	ENSDLAG00005019718	ENSDLAG00005021818	ENSDLAG00005021823	ENSDLAG00005030331	ENSDLAG00005020478	ENSDLAG00005030971	ENSDLAG00005034006	ENSDLAG00005020465	ENSDLAG00005009183	ENSDLAG00005034986	ENSDLAG00005020302	ENSDLAG00005020443	ENSDLAG00005003097	ENSDLAG00005033490 #30
Large yellow croaker	MODERN SPECIES	480	cartl (ENSLCRG00005018620)	ENSLCRG00005018622	cdkn2aip (ENSLCRG00005018623)	tubgcp4 (ENSLCRG00005018624)	tp53bp1 (ENSLCRG00005018625)	MAP1A (ENSLCRG00005018630)	PPIP5K1 (ENSLCRG00005018655)	ENSLCRG00005021316	ENSLCRG00005021317	HDGFL3 (ENSLCRG00005021318)	ENSLCRG00005021320	ENSLCRG00005021461	txlng (ENSLCRG00005021462)	ccdc102a (ENSLCRG00005021503)	DOK4 (ENSLCRG00005021509)	nadsyn1 (ENSLCRG00005021511) #22	tpcn2 (ENSLCRG00005021517) #23	pop4 (ENSLCRG00005021520)	PLEKHF1 (ENSLCRG00005021521)	ENSLCRG00005021523	snrpa1 (ENSLCRG00005021524)	ENSLCRG00005021541	snrpa1 (ENSLCRG00005021543)	ENSLCRG00005021545	ENSLCRG00005021546	ENSLCRG00005021551	ENSLCRG00005021736	ENSLCRG00005021737	tollip (ENSLCRG00005021739)	celf1 (ENSLCRG00005021741)	mtfmt (ENSLCRG00005021772)
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	4417																nadsyn1 (ENSLBEG00000028647) #22
Ballan wrasse	MODERN SPECIES	557																ENSLBEG00000014358 #22	nadsyn1 (ENSLBEG00000014301) #22	tpcn2 (ENSLBEG00000014217) #23	pop4 (ENSLBEG00000014139)	PLEKHF1 (ENSLBEG00000014114)	ENSLBEG00000014084	PCSK6 (ENSLBEG00000014001)	ENSLBEG00000013969	ENSLBEG00000013948	ankdd1a (ENSLBEG00000013842)	ENSLBEG00000013787	mtch2 (ENSLBEG00000013752)	ENSLBEG00000013661	ENSLBEG00000013541	ENSLBEG00000013497	npsn (ENSLBEG00000013457)
Ballan wrasse	MODERN SPECIES	557															ENSLBEG00000014358 #22	nadsyn1 (ENSLBEG00000014301) #22	tpcn2 (ENSLBEG00000014217) #23	pop4 (ENSLBEG00000014139)	PLEKHF1 (ENSLBEG00000014114)	ENSLBEG00000014084	PCSK6 (ENSLBEG00000014001)	ENSLBEG00000013969	ENSLBEG00000013948	ankdd1a (ENSLBEG00000013842)	ENSLBEG00000013787	mtch2 (ENSLBEG00000013752)	ENSLBEG00000013661	ENSLBEG00000013541	ENSLBEG00000013497	npsn (ENSLBEG00000013457)	ENSLBEG00000013412
Ovalentaria	ANCESTRAL SPECIES	17										ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105 #31
Atherinomorphae	ANCESTRAL SPECIES	8										ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30
Oryzias	ANCESTRAL SPECIES	13															ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000159506	ENSGT00730000110960.b	ENSGT00940000155463.vc	ENSGT00940000154748.A	ENSGT00940000153942.b	ENSGT00940000167699	ENSGT00390000005844.a.a	ENSGT00940000157398.i.a	ENSGT01090000260005.a.b.b	ENSGT00940000164952	ENSGT00550000074806	ENSGT00940000157327.o.b	ENSGT00950000182989.A.a.h
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000158068.d	ENSGT00940000158815	ENSGT00940000160363	ENSGT01050000244857.C.a.a	ENSGT00940000166109	ENSGT00940000162219	ENSGT00940000177138	ENSGT00390000013104	ENSGT00940000158970	ENSGT00390000017828	ENSGT00390000007315	ENSGT00390000009505	ENSGT00940000154615.i.a.a.c.b.a.a	ENSGT00390000015484.i	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000159506	ENSGT00730000110960.b	ENSGT00940000155463.vc	ENSGT00940000154748.A	ENSGT00940000153942.b	ENSGT00390000005844.a.a	ENSGT00940000157398.i.a	ENSGT01090000260005.a.b.b	ENSGT00940000164952	ENSGT00550000074806	ENSGT00940000157327.o.b	ENSGT00950000182989.A.a.h	ENSGT00390000015893
Javanese ricefish	MODERN SPECIES	17	chsy1 (ENSOJAG00000004680)	selenos (ENSOJAG00000004659)	ENSOJAG00000004643	MINAR1 (ENSOJAG00000004637)	ENSOJAG00000004612	ENSOJAG00000004604	tollip (ENSOJAG00000004368)	celf1 (ENSOJAG00000004303)	mtfmt (ENSOJAG00000004251)	vps35 (ENSOJAG00000003795)	zgc:92818 (ENSOJAG00000003756)	ENSOJAG00000017299	lect2.1 (ENSOJAG00000017289)	DOK4 (ENSOJAG00000017228)	ENSOJAG00000017213	nadsyn1 (ENSOJAG00000017014) #22	tpcn2 (ENSOJAG00000016766) #23	pop4 (ENSOJAG00000016740)	PCSK6 (ENSOJAG00000016525)	ccdc102a (ENSOJAG00000016509)	txlng (ENSOJAG00000016282)	ENSOJAG00000016011	ENSOJAG00000016003	ENSOJAG00000015965	BNC1 (ENSOJAG00000015961)	ENSOJAG00000015953	gjd6 (ENSOJAG00000015948)	lmnl3 (ENSOJAG00000015916)	ENSOJAG00000015757	CIB2 (ENSOJAG00000015744)	idh3a (ENSOJAG00000015656)
Oryzias_a	ANCESTRAL SPECIES	6																ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000159506	ENSGT00730000110960.b	ENSGT00940000155463.vc	ENSGT00940000154748.A	ENSGT00940000153942.b	ENSGT00390000005844.a.a	ENSGT00940000157398.i.a	ENSGT00940000164952	ENSGT00550000074806	ENSGT00940000157327.o.b	ENSGT00950000182989.A.a.g.b.a	ENSGT00390000015893	ENSGT00390000015857
Japanese Medaka HdrR	MODERN SPECIES	17																nadsyn1 (ENSORLG00000019547) #22	tpcn2 (ENSORLG00000030423) #23	pop4 (ENSORLG00000020317)	PCSK6 (ENSORLG00000020313)	ccdc102a (ENSORLG00000024928)	ENSORLG00000023089	ENSORLG00000023707	rbb4l (ENSORLG00000019442)	ENSORLG00000027782	ENSORLG00000022469	HDGFL3 (ENSORLG00000025851)	BNC1 (ENSORLG00000019081)	sh3gl3a (ENSORLG00000019055)	lmnl3 (ENSORLG00000019004)	ENSORLG00000029029	EFL1 (ENSORLG00000020390)
Chinese medaka	MODERN SPECIES	4281																nadsyn1 (ENSOSIG00000013763) #22
Cyprinodontiformes	ANCESTRAL SPECIES	9										ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30	ENSGT01090000260003.a.a #29	ENSGT00940000160601 #26
Aplocheiloidei	ANCESTRAL SPECIES	67								ENSGT01090000260005.a.b.b	ENSGT00390000005844.a.a	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b.v	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30	ENSGT01090000260003.a.a #29	ENSGT00940000160601 #26
Mangrove rivulus	MODERN SPECIES	48	skor1a (ENSKMAG00000011761)	map2k5 (ENSKMAG00000011774)	SMAD3 (ENSKMAG00000011796)	smad6a (ENSKMAG00000011817)	tmem208 (ENSKMAG00000011828)	slc39a1 (ENSKMAG00000011846)	ENSKMAG00000011864	gjd6 (ENSKMAG00000011890)	BNC1 (ENSKMAG00000011907)	TSSK2 (ENSKMAG00000011920)	HDGFL3 (ENSKMAG00000011937)	rbb4l (ENSKMAG00000011977)	txlng (ENSKMAG00000012016)	ccdc102a (ENSKMAG00000012052)	DOK4 (ENSKMAG00000012096)	nadsyn1 (ENSKMAG00000012135) #22	tpcn2 (ENSKMAG00000012198) #23	pop4 (ENSKMAG00000012250)	PLEKHF1 (ENSKMAG00000012266)	PCSK6 (ENSKMAG00000012301)	ENSKMAG00000012410	ENSKMAG00000012421	ankdd1a (ENSKMAG00000012457)	znf414 (ENSKMAG00000012554)	mtch2 (ENSKMAG00000012495)	ENSKMAG00000012572	ENSKMAG00000012590	ENSKMAG00000012613	ENSKMAG00000012641 #31	ano1a (ENSKMAG00000012678) #30	zgc:153993 (ENSKMAG00000012745) #29
Turquoise killifish	MODERN SPECIES	870																nadsyn1 (ENSNFUG00015012085) #22
Cyprinodontoidei	ANCESTRAL SPECIES	89											ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000158198	ENSGT00990000203849	ENSGT00390000008646	ENSGT00390000017791	ENSGT00530000063851.a.a
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000157182.g.b #30	ENSGT00390000002105 #31	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00390000000954	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000158198	ENSGT00390000008646
Amazon molly	MODERN SPECIES	1178																nadsyn1 (ENSPFOG00000002619) #22	tpcn2 (ENSPFOG00000023716) #23
Sailfin molly	MODERN SPECIES	3007																nadsyn1 (ENSPLAG00000011707) #22
Guppy	MODERN SPECIES	455	ENSPREG00000022243	npsn (ENSPREG00000022252)	mtch2 (ENSPREG00000022259)	ENSPREG00000022264	ENSPREG00000022271	ENSPREG00000022280	ENSPREG00000022288	ENSPREG00000022307	HDGFL3 (ENSPREG00000022315)	RBBP7 (ENSPREG00000022323)	txlng (ENSPREG00000022334)	ENSPREG00000022349	ENSPREG00000022351	ccdc102a (ENSPREG00000022357)	DOK4 (ENSPREG00000022363)	nadsyn1 (ENSPREG00000022367) #22	ENSPREG00000022377	tpcn2 (ENSPREG00000022384) #23	pop4 (ENSPREG00000022403)	arnt2 (ENSPREG00000022410)	fah (ENSPREG00000022425)	ENSPREG00000022438	rrad (ENSPREG00000022441)	ENSPREG00000022450	ca7 (ENSPREG00000022462)	nae1 (ENSPREG00000022472)	ENSPREG00000022489	dync1li2 (ENSPREG00000022496)	cmtm4 (ENSPREG00000022507)	cmtm3 (ENSPREG00000022513)	CKLF (ENSPREG00000022521)
Platyfish	MODERN SPECIES	18	zgc:153993 (ENSXMAG00000001529) #29	ano1a (ENSXMAG00000000754) #30	ENSXMAG00000000803 #31	c6ast3 (ENSXMAG00000025898)	ENSXMAG00000000804	mtch2 (ENSXMAG00000029603)	ENSXMAG00000000830	ENSXMAG00000000831	ENSXMAG00000000834	BNC1 (ENSXMAG00000029406)	HDGFL3 (ENSXMAG00000013846)	rbb4l (ENSXMAG00000013847)	txlng (ENSXMAG00000013855)	ccdc102a (ENSXMAG00000013856)	DOK4 (ENSXMAG00000023042)	nadsyn1 (ENSXMAG00000022550) #22	tpcn2 (ENSXMAG00000013860) #23	pop4 (ENSXMAG00000013862)	arnt2 (ENSXMAG00000013865)	fah (ENSXMAG00000001743)	zgc:92818 (ENSXMAG00000018441)	vps35 (ENSXMAG00000018438)	ENSXMAG00000021182	mtfmt (ENSXMAG00000003975)	ENSXMAG00000025957	celf1 (ENSXMAG00000029339)	CEMIP (ENSXMAG00000028253)	ENSXMAG00000021043	ENSXMAG00000025896	mesd (ENSXMAG00000016078)	TLNRD1 (ENSXMAG00000019479)
NAME_4	ANCESTRAL SPECIES	342																ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000158198	ENSGT00990000203849	ENSGT00390000008646	ENSGT00390000017791	ENSGT00530000063851.a.a
Sheepshead minnow	MODERN SPECIES	1531																nadsyn1 (ENSCVAG00000018739) #22	ENSCVAG00000018656	tpcn2 (ENSCVAG00000018641) #23	POP4 (ENSCVAG00000018602)	PLEKHF1 (ENSCVAG00000018562)
Ovalentaria_B	ANCESTRAL SPECIES	10					ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000167699	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a	ENSGT01060000248726	ENSGT00940000167699	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00940000178372.A	ENSGT00940000178372.B	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a
Nile tilapia	MODERN SPECIES		rpl12 (ENSONIG00000003387)	mex3b (ENSONIG00000003391)	EFL1 (ENSONIG00000003394)	ENSONIG00000003406	lmnl3 (ENSONIG00000003411)	ENSONIG00000003416	gjd6 (ENSONIG00000038518)	sh3gl3a (ENSONIG00000003418)	BNC1 (ENSONIG00000003425)	TSSK2 (ENSONIG00000003428)	HDGFL3 (ENSONIG00000041421)	rbb4l (ENSONIG00000003429)	txlng (ENSONIG00000003437)	ccdc102a (ENSONIG00000003440)	DOK4 (ENSONIG00000003443)	nadsyn1 (ENSONIG00000003446) #22	tpcn2 (ENSONIG00000003453) #23	pop4 (ENSONIG00000003458)	PLEKHF1 (ENSONIG00000042684)	PKP3 (ENSONIG00000003463)	cd81a (ENSONIG00000003468)	tph1b (ENSONIG00000003476)	AP2A2 (ENSONIG00000003489)	ENSONIG00000023928	ENSONIG00000003498	si:ch211-260e23.8 (ENSONIG00000003499)	si:ch211-260e23.9 (ENSONIG00000028167)	zgc:162297 (ENSONIG00000003502)	ccne1 (ENSONIG00000003504)	ENSONIG00000027462	ZNF536 (ENSONIG00000003511)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952	ENSGT00940000159206.b	ENSGT01090000260005.a.b.b	ENSGT00940000157398.i.a	ENSGT00390000005844.a.a.l	ENSGT01090000260266	ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00940000178372.A	ENSGT00940000178372.B	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a
P. nyererei	MODERN SPECIES	314	mex3b (ENSPNYG00000019384)	EFL1 (ENSPNYG00000019406)	ENSPNYG00000019466	ENSPNYG00000019573	lmnl3 (ENSPNYG00000019602)	ENSPNYG00000019620	gjd6 (ENSPNYG00000019659)	sh3gl3a (ENSPNYG00000019692)	BNC1 (ENSPNYG00000019746)	TSSK2 (ENSPNYG00000019774)	HDGFL3 (ENSPNYG00000019804)	rbb4l (ENSPNYG00000019829)	txlng (ENSPNYG00000019867)	ccdc102a (ENSPNYG00000019877)	DOK4 (ENSPNYG00000019911)	nadsyn1 (ENSPNYG00000019946) #22	tpcn2 (ENSPNYG00000020013) #23	pop4 (ENSPNYG00000020038)	PLEKHF1 (ENSPNYG00000020050)	PKP3 (ENSPNYG00000020056)	cd81a (ENSPNYG00000020075)	tph1b (ENSPNYG00000020110)	AP2A2 (ENSPNYG00000020149)	ENSPNYG00000020224	si:ch211-260e23.8 (ENSPNYG00000020247)	si:ch211-260e23.9 (ENSPNYG00000020257)	zgc:162297 (ENSPNYG00000020263)	ccne1 (ENSPNYG00000020291)	ZNF536 (ENSPNYG00000020319)	tshz3b (ENSPNYG00000020351)
Zebra mbuna	MODERN SPECIES	1091	mex3b (ENSMZEG00005003082)	EFL1 (ENSMZEG00005003012)	ENSMZEG00005002988	lmnl3 (ENSMZEG00005002830)	ENSMZEG00005002791	gjd6 (ENSMZEG00005002755)	sh3gl3a (ENSMZEG00005002721)	BNC1 (ENSMZEG00005002713)	ENSMZEG00005002702	TSSK2 (ENSMZEG00005002687)	HDGFL3 (ENSMZEG00005002668)	ENSMZEG00005002637	TXLNG (ENSMZEG00005002622)	ccdc102a (ENSMZEG00005002596)	DOK4 (ENSMZEG00005002570)	nadsyn1 (ENSMZEG00005002498) #22	tpcn2 (ENSMZEG00005002370) #23	pop4 (ENSMZEG00005002360)	PLEKHF1 (ENSMZEG00005002345)	PLEKHF1 (ENSMZEG00005002339)	PKP3 (ENSMZEG00005002332)	cd81a (ENSMZEG00005002299)	tph1b (ENSMZEG00005002263)	AP2A2 (ENSMZEG00005002184)	ENSMZEG00005002156	C19orf12 (ENSMZEG00005002134)	C19orf12 (ENSMZEG00005002123)	si:ch211-260e23.9 (ENSMZEG00005002115)	zgc:162297 (ENSMZEG00005002110)	ccne1 (ENSMZEG00005002055)	ENSMZEG00005002042
Eastern happy	MODERN SPECIES		EFL1 (ENSACLG00000025780)	ENSACLG00000025830	ENSACLG00000025874	ENSACLG00000025885	ENSACLG00000025890	gjd6 (ENSACLG00000025895)	sh3gl3a (ENSACLG00000025916)	BNC1 (ENSACLG00000025966)	ENSACLG00000025982	TSSK2 (ENSACLG00000025996)	HDGFL3 (ENSACLG00000000030)	rbb4l (ENSACLG00000000073)	txlng (ENSACLG00000000094)	ccdc102a (ENSACLG00000000106)	DOK4 (ENSACLG00000000143)	nadsyn1 (ENSACLG00000000412) #22	tpcn2 (ENSACLG00000000459) #23	pop4 (ENSACLG00000000526)	PLEKHF1 (ENSACLG00000000556)	PLEKHF1 (ENSACLG00000000563)	PKP3 (ENSACLG00000000566)	cd81a (ENSACLG00000000591)	tph1b (ENSACLG00000000631)	AP2A2 (ENSACLG00000000668)	ENSACLG00000000757	C19orf12 (ENSACLG00000000786)	C19orf12 (ENSACLG00000000798)	si:ch211-260e23.9 (ENSACLG00000000804)	zgc:162297 (ENSACLG00000000821)	ccne1 (ENSACLG00000000839)	ZNF536 (ENSACLG00000000897)
Lyretail cichlid	MODERN SPECIES	379	ENSNBRG00000000555	ENSNBRG00000000576	ENSNBRG00000000592	lmnl3 (ENSNBRG00000000671)	ENSNBRG00000000679	gjd6 (ENSNBRG00000000707)	sh3gl3a (ENSNBRG00000000741)	BNC1 (ENSNBRG00000000779)	ENSNBRG00000000833	TSSK2 (ENSNBRG00000000850)	ENSNBRG00000000876	rbb4l (ENSNBRG00000000923)	txlng (ENSNBRG00000000970)	ccdc102a (ENSNBRG00000000998)	DOK4 (ENSNBRG00000001153)	nadsyn1 (ENSNBRG00000001182) #22	tpcn2 (ENSNBRG00000001332) #23	PLEKHF1 (ENSNBRG00000001544)	ENSNBRG00000001557	cd81a (ENSNBRG00000001623)	TPH1 (ENSNBRG00000001647)	AP2A2 (ENSNBRG00000001674)	ENSNBRG00000001697	ENSNBRG00000001705	si:ch211-260e23.8 (ENSNBRG00000001717)	si:ch211-260e23.9 (ENSNBRG00000001727)	zgc:162297 (ENSNBRG00000001734)	ccne1 (ENSNBRG00000001765)	ZNF536 (ENSNBRG00000001799)	tshz3b (ENSNBRG00000001818)	ENSNBRG00000001840
Midas cichlid	MODERN SPECIES	198															DOK4 (ENSACIG00000008205)	nadsyn1 (ENSACIG00000008223) #22	tpcn2 (ENSACIG00000008273) #23	pop4 (ENSACIG00000008358)	PLEKHF1 (ENSACIG00000008413)	PLEKHF1 (ENSACIG00000008418)	PKP3 (ENSACIG00000008437)	cd81a (ENSACIG00000008503)	tph1b (ENSACIG00000008600)	AP2A2 (ENSACIG00000008771)	ENSACIG00000008820	si:ch211-260e23.8 (ENSACIG00000008828)	si:ch211-260e23.9 (ENSACIG00000008839)	zgc:162297 (ENSACIG00000008870)	ccne1 (ENSACIG00000008891)	ZNF536 (ENSACIG00000008978)	tshz3b (ENSACIG00000009014)
Pomacentridae	ANCESTRAL SPECIES	73										ENSGT00940000162226	ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000163716.c.a.a.b	ENSGT00390000002105 #31	ENSGT00940000157182.g.b #30	ENSGT01090000260003.a.a #29	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT00940000166897 #25
Pomacentridae_A	ANCESTRAL SPECIES	160											ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000157182.g.b.e.a #30	ENSGT00940000157182.g.b.e.b #30	ENSGT01090000260003.a.a #29	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT00940000166897 #25	ENSGT00940000157816.a.b #24	ENSGT00940000161356
Amphiprion	ANCESTRAL SPECIES	184											ENSGT00940000153942.b	ENSGT00940000154748.A	ENSGT00940000155463	ENSGT00730000110960.b	ENSGT00940000160143	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00390000010067	ENSGT00940000159506	ENSGT00390000000954	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000157182.g.b.e.a #30	ENSGT00940000157182.g.b.e.b #30	ENSGT01090000260003.a.a #29	ENSGT00940000160601 #26	ENSGT00940000158825.c #27	ENSGT00940000161128 #28	ENSGT00940000166897 #25	ENSGT00940000157816.a.b #24	ENSGT00940000161356
Orange clownfish	MODERN SPECIES		znf414 (ENSAPEG00000004054)	ENSAPEG00000004047 #31	ENSAPEG00000003735	ENSAPEG00000003699	gjd6 (ENSAPEG00000003677)	ENSAPEG00000003653	BNC1 (ENSAPEG00000003635)	ENSAPEG00000003548	HDGFL3 (ENSAPEG00000003436)	ENSAPEG00000003388	txlng (ENSAPEG00000003372)	ccdc102a (ENSAPEG00000003331)	ENSAPEG00000003315	ENSAPEG00000003284	DOK4 (ENSAPEG00000003217)	nadsyn1 (ENSAPEG00000003083) #22	tpcn2 (ENSAPEG00000002855) #23	pop4 (ENSAPEG00000002829)	ENSAPEG00000002811	ENSAPEG00000002793	ENSAPEG00000002768	PCSK6 (ENSAPEG00000002680)	ENSAPEG00000002669	ENSAPEG00000002658	ankdd1a (ENSAPEG00000002592)	ano1a (ENSAPEG00000002576) #30	ano1a (ENSAPEG00000002549) #30	zgc:153993 (ENSAPEG00000002543) #29	fgf19 (ENSAPEG00000002532) #26	fgf4 (ENSAPEG00000002516) #27	fgf3 (ENSAPEG00000002492) #28
Clown anemonefish	MODERN SPECIES	632																nadsyn1 (ENSAOCG00000006673) #22	ENSAOCG00000006626	dnajc27 (ENSAOCG00000006604)	ENSAOCG00000006576	creg1 (ENSAOCG00000006567)	ENSAOCG00000006560	f7l (ENSAOCG00000006543)	f7 (ENSAOCG00000006528)	f10 (ENSAOCG00000006507)	prozb (ENSAOCG00000006494)	pcid2 (ENSAOCG00000006485)	ENSAOCG00000006443	bcor (ENSAOCG00000006419)
Spiny chromis	MODERN SPECIES	576														DOK4 (ENSAPOG00000007911)	ENSAPOG00000007871	nadsyn1 (ENSAPOG00000007854) #22	tpcn2 (ENSAPOG00000007750) #23	pop4 (ENSAPOG00000007670)	ENSAPOG00000007648	ENSAPOG00000007575	ENSAPOG00000007561	ankdd1a (ENSAPOG00000000205)	ano1a (ENSAPOG00000007482) #30
Bicolor damselfish	MODERN SPECIES	1676															DOK4 (ENSSPAG00000009095)	nadsyn1 (ENSSPAG00000009042) #22	tpcn2 (ENSSPAG00000009005) #23
Pinecone sodierfish	MODERN SPECIES	17	ENSMMDG00005000425	txlng (ENSMMDG00005000463)	rbb4l (ENSMMDG00005000718)	HDGFL3 (ENSMMDG00005000775)	BNC1 (ENSMMDG00005000777)	lctla (ENSMMDG00005000784)	crybgx (ENSMMDG00005000793)	ccnb2 (ENSMMDG00005000795)	cars1 (ENSMMDG00005000850)	pex16 (ENSMMDG00005002018)	arfgap2 (ENSMMDG00005002034)	ccdc102a (ENSMMDG00005002043)	ENSMMDG00005002045	DOK4 (ENSMMDG00005002052)	ENSMMDG00005002083	nadsyn1 (ENSMMDG00005002098) #22	ENSMMDG00005002116	ENSMMDG00005002122	ENSMMDG00005002126	ENSMMDG00005002127	ENSMMDG00005002131	ENSMMDG00005002134	ENSMMDG00005002136	ENSMMDG00005002143	ENSMMDG00005002149	ENSMMDG00005002162	AP2A2 (ENSMMDG00005002186)	tph1b (ENSMMDG00005002235)	kcnc1a (ENSMMDG00005002317)	cd81a (ENSMMDG00005002324)	ENSMMDG00005002328
Cod	MODERN SPECIES	5	ENSGMOG00000013672	ENSGMOG00000024000	ENSGMOG00000028979	ENSGMOG00000031920	ENSGMOG00000027344	ENSGMOG00000003026	ENSGMOG00000024857	ENSGMOG00000003107	ENSGMOG00000033930 ##19	adgrg1 (ENSGMOG00000017731) ##19	ENSGMOG00000001339	slc7a6os (ENSGMOG00000001320)	ENSGMOG00000029934 #18	ENSGMOG00000010577 #20	ENSGMOG00000000372 #21	nadsyn1 (ENSGMOG00000000357) #22	ENSGMOG00000000341 #23	pop4 (ENSGMOG00000000335)	PLEKHF1 (ENSGMOG00000000327)	si:ch211-260e23.8 (ENSGMOG00000005245)	si:ch211-260e23.9 (ENSGMOG00000032014)	zgc:162297 (ENSGMOG00000000319)	ccne1 (ENSGMOG00000000312)	ZNF536 (ENSGMOG00000035935)	tshz3b (ENSGMOG00000032085)	ZNF507 (ENSGMOG00000022742)	DPY19L3 (ENSGMOG00000011541)	ENSGMOG00000002095	ENSGMOG00000017564	ENSGMOG00000023846	ENSGMOG00000004897
Osteoglossiformes	ANCESTRAL SPECIES	68	ENSGT00940000158487.c	ENSGT00940000158708.b.a	ENSGT00940000155357.b	ENSGT00940000154641.C.b.e.b	ENSGT00910000144204.b.d	ENSGT00940000161080.b	ENSGT00940000157577.c.a.e	ENSGT00940000159637.c.a	ENSGT00940000156969.vc.b	ENSGT00390000008152.B.b.f	ENSGT00940000159545	ENSGT00940000160201	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763.b #23	ENSGT00940000157816.a.b.a #24	ENSGT00940000166897 #25	ENSGT00940000160601.i #26	ENSGT00940000158825.b #27	ENSGT00940000161128.c.b #28	ENSGT00940000161128.d #28	ENSGT00940000157182.g.a ##30	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000165480	ENSGT00940000157530.b.b
Asian bonytongue	MODERN SPECIES	2	insyn1 (ENSSFOG00015029092)	loxl1 (ENSSFOG00015006457)	SCAMP5 (ENSSFOG00015026115)	IGDCC4 (ENSSFOG00015029172)	IGDCC3 (ENSSFOG00015006357)	cilp (ENSSFOG00015006347)	slc5a12 (ENSSFOG00015006291)	ENSSFOG00015006270	agbl2 (ENSSFOG00015006250)	ENSSFOG00015006192	pex16 (ENSSFOG00015006166)	large2 (ENSSFOG00015006104)	large2 (ENSSFOG00015006066)	ENSSFOG00015006056	dhcr7 (ENSSFOG00015006035) #21	nadsyn1 (ENSSFOG00015005980) #22	tpcn2 (ENSSFOG00015005933) #23	ENSSFOG00015030802	ccnd1 (ENSSFOG00015005911) #24	lto1 (ENSSFOG00015027132) #25	fgf19 (ENSSFOG00015005865) #26	ENSSFOG00015026779	fgf4 (ENSSFOG00015011876) #27	FGF3 (ENSSFOG00015005700) #28	ANO1 (ENSSFOG00015005616) ##30	FADD (ENSSFOG00015032079) #31	ppfia1 (ENSSFOG00015005328)	CTTN (ENSSFOG00015005291)	shank2b (ENSSFOG00015005229)	acte1 (ENSSFOG00015000126)	ENSSFOG00015000093
Reedfish	MODERN SPECIES	10	ENSECRG00000012990	tmem9b (ENSECRG00000013001)	ASCL3 (ENSECRG00000013014)	dennd2b (ENSECRG00000013034)	RPL27A (ENSECRG00000013081)	TRIM66 (ENSECRG00000013112)	rerglb (ENSECRG00000013141)	stk33 (ENSECRG00000013161)	ENSECRG00000013187	lmo1 (ENSECRG00000013220)	RIC3 (ENSECRG00000013264)	TUB (ENSECRG00000013304)	ENSECRG00000013356	ENSECRG00000013374	dhcr7 (ENSECRG00000013424) #21	nadsyn1 (ENSECRG00000013464) #22	tpcn2 (ENSECRG00000013517) #23	CCND1 (ENSECRG00000013563) ##24	lto1 (ENSECRG00000013576) #25	fgf19 (ENSECRG00000013594) #26	fgf4 (ENSECRG00000013614) #27	fgf3 (ENSECRG00000013631) #28	ano1a (ENSECRG00000013688) #30	FADD (ENSECRG00000013771) #31	PPFIA1 (ENSECRG00000013899)	CTTN (ENSECRG00000014308)	shank2b (ENSECRG00000014415)	ENSECRG00000014528	ENSECRG00000014561	ENSECRG00000014642	ENSECRG00000000421
Sarcopterygii	ANCESTRAL SPECIES	114	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a	ENSGT00940000153201	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT01090000260003.a.a #29	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Coelacanth	MODERN SPECIES	523											E2F8 (ENSLACG00000016113)	CSRP3 (ENSLACG00000016057)	ZDHHC13 (ENSLACG00000015963)	ENSLACG00000015905	DHCR7 (ENSLACG00000015729) #21	NADSYN1 (ENSLACG00000015568) #22	TPCN2 (ENSLACG00000015494) #23	CCND1 (ENSLACG00000013180) #24	lto1 (ENSLACG00000012966) #25	FGF19 (ENSLACG00000012846) #26	FGF4 (ENSLACG00000012527) #27	FGF3 (ENSLACG00000012317) #28	zgc:153993 (ENSLACG00000011168) #29	ANO1 (ENSLACG00000009098) #30	FADD (ENSLACG00000008763) #31	PPFIA1 (ENSLACG00000007439)	CTTN (ENSLACG00000006679)	shank2b (ENSLACG00000004766)
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00940000153571.b
Anura	ANCESTRAL SPECIES	85																ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000179816	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000025086	CHRM4 (ENSLLEG00000025061)	DGKZ (ENSLLEG00000024009)	CREB3L1 (ENSLLEG00000023855)	PHF21A (ENSLLEG00000023594)	LARGE2 (ENSLLEG00000023346)	PEX16 (ENSLLEG00000023185)	MAPK8IP1 (ENSLLEG00000022952)	CRY2 (ENSLLEG00000022391)	SLC35C1 (ENSLLEG00000022256)	CHST1 (ENSLLEG00000022223)	ENSLLEG00000022188	ENSLLEG00000022055	ENSLLEG00000021985	ENSLLEG00000021771	NADSYN1 (ENSLLEG00000021615) #22	TPCN2 (ENSLLEG00000021215) #23	ENSLLEG00000021177	CCND1 (ENSLLEG00000021050) #24	ENSLLEG00000020984 #25	FGF19 (ENSLLEG00000020932) #26	FGF4 (ENSLLEG00000020868) #27	ENSLLEG00000020854	FGF3 (ENSLLEG00000020810) #28	ENSLLEG00000020792	ENSLLEG00000020760	ENSLLEG00000020746	ANO1 (ENSLLEG00000019003) #30	ENSLLEG00000018889 #31	ENSLLEG00000018856 #31	ENSLLEG00000018838
Amniota	ANCESTRAL SPECIES	20	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Archelosauria	ANCESTRAL SPECIES	2	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Aves	ANCESTRAL SPECIES	2	ENSGT00940000167680	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000167680	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00390000013180	ENSGT00940000167680	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Passeriformes	ANCESTRAL SPECIES	25	ENSGT00940000153962.a	ENSGT00940000157791	ENSGT00390000006367.d	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b	ENSGT00940000163529	ENSGT00940000158780	ENSGT00390000000221.A #7	ENSGT00940000157223 #8	ENSGT00940000155456	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Great tit	MODERN SPECIES	25	LUZP2 (ENSPMJG00000008131)	OLFML1 (ENSPMJG00000008096)	PPFIBP2 (ENSPMJG00000008084)	CYB5R2 (ENSPMJG00000008082)	FAR1 (ENSPMJG00000008037)	PTH (ENSPMJG00000008035)	BTBD10 (ENSPMJG00000008028)	BMAL1 (ENSPMJG00000008016)	RASSF10 (ENSPMJG00000007953)	TEAD1 (ENSPMJG00000007946)	PARVA (ENSPMJG00000007907)	MICAL2 (ENSPMJG00000007837)	DKK3 (ENSPMJG00000007821) #7	USP47 (ENSPMJG00000007803) #8	DHCR7 (ENSPMJG00000007768) #21	NADSYN1 (ENSPMJG00000007755) #22	TPCN2 (ENSPMJG00000007718) #23	CCND1 (ENSPMJG00000007688) #24	LTO1 (ENSPMJG00000007687)	FGF19 (ENSPMJG00000007686) #26	FGF4 (ENSPMJG00000007684) #27	FGF3 (ENSPMJG00000007681) #28	ANO1 (ENSPMJG00000007664) #30	FADD (ENSPMJG00000007639) #31	PPFIA1 (ENSPMJG00000007603)	CTTN (ENSPMJG00000007574)	ENSPMJG00000007566	SHANK2 (ENSPMJG00000007558)	ENSPMJG00000007515	CD59 (ENSPMJG00000007514)	FBXO3 (ENSPMJG00000007496)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT00390000006367.d	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.k.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b	ENSGT00940000163529	ENSGT00940000158780	ENSGT00390000000221.A.i #7	ENSGT00390000000221.A.j #7	ENSGT00940000157223 #8	ENSGT00940000155456	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565.b	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000153962.a	ENSGT00940000157791	ENSGT00390000006367.d	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b	ENSGT00940000163529	ENSGT00940000158780	ENSGT00390000000221.A.i #7	ENSGT00390000000221.A.j #7	ENSGT00940000157223 #8	ENSGT00940000155456	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565.b	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Medium ground finch	MODERN SPECIES	105		PTH (ENSGFOG00000010633)	BTBD10 (ENSGFOG00000010627)	BMAL1 (ENSGFOG00000010620)	ENSGFOG00000010618	TEAD1 (ENSGFOG00000010592)	PARVA (ENSGFOG00000010221)	ENSGFOG00000010175	MICAL2 (ENSGFOG00000010142)	DKK3 (ENSGFOG00000010128) #7	USP47 (ENSGFOG00000010116) #8	ENSGFOG00000010109	ENSGFOG00000010104	ENSGFOG00000010095	DHCR7 (ENSGFOG00000010089) #21	NADSYN1 (ENSGFOG00000010073) #22	TPCN2 (ENSGFOG00000010031) #23	CCND1 (ENSGFOG00000010018) #24	LTO1 (ENSGFOG00000010010)	FGF19 (ENSGFOG00000010004) #26	FGF4 (ENSGFOG00000009997) #27	FGF3 (ENSGFOG00000009991) #28	ANO1 (ENSGFOG00000009973) #30	FADD (ENSGFOG00000009959) #31	PPFIA1 (ENSGFOG00000009159)	CTTN (ENSGFOG00000009092)	ENSGFOG00000009079	ENSGFOG00000009069	CD59 (ENSGFOG00000009059)	FBXO3 (ENSGFOG00000009052)	LMO2 (ENSGFOG00000009039)
Passeroidea	ANCESTRAL SPECIES	1															ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565.b	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Zebra finch	MODERN SPECIES	27	TEAD1 (ENSTGUG00000021734)	PARVA (ENSTGUG00000026634)	MICAL2 (ENSTGUG00000016051)	DKK3 (ENSTGUG00000016109) #7	USP47 (ENSTGUG00000016131) #8	GALNT18 (ENSTGUG00000016192)	ZDHHC13 (ENSTGUG00000015883)	CSRP3 (ENSTGUG00000015869)	E2F8 (ENSTGUG00000015857)	NAV2 (ENSTGUG00000015800)	ENSTGUG00000023608	DBX1 (ENSTGUG00000015791)	PRMT3 (ENSTGUG00000015757)	SLC6A5 (ENSTGUG00000015718)	DHCR7 (ENSTGUG00000005254) #21	NADSYN1 (ENSTGUG00000005275) #22	TPCN2 (ENSTGUG00000005328) #23	CCND1 (ENSTGUG00000005350) #24	LTO1 (ENSTGUG00000024666)	FGF19 (ENSTGUG00000019746) #26	FGF4 (ENSTGUG00000019156) #27	FGF3 (ENSTGUG00000005379) #28	ANO1 (ENSTGUG00000005385) #30	FADD (ENSTGUG00000029237) #31	PPFIA1 (ENSTGUG00000005461)	CTTN (ENSTGUG00000005520)	ENSTGUG00000028814	SHANK2 (ENSTGUG00000005571)	ENSTGUG00000028508	ENSTGUG00000025115	FBXO3 (ENSTGUG00000005600)
Common canary	MODERN SPECIES	45	CCDC73 (ENSSCAG00000007897)	PRRG4 (ENSSCAG00000007909)	QSER1 (ENSSCAG00000007912)	DEPDC7 (ENSSCAG00000007915)	TCP11L1 (ENSSCAG00000007919)	CSTF3 (ENSSCAG00000007929)	HIPK3 (ENSSCAG00000007942)	KIAA1549L (ENSSCAG00000007949)	SPON1 (ENSSCAG00000007979)	SYT9 (ENSSCAG00000007985)	OLFML1 (ENSSCAG00000007990)	PPFIBP2 (ENSSCAG00000008004)	CYB5R2 (ENSSCAG00000008040)	FAR1 (ENSSCAG00000008134)	DHCR7 (ENSSCAG00000008143) #21	NADSYN1 (ENSSCAG00000008149) #22	TPCN2 (ENSSCAG00000008186) #23	ENSSCAG00000008240 #24	LTO1 (ENSSCAG00000008248)	FGF19 (ENSSCAG00000008256) #26	ANO1 (ENSSCAG00000008269) #30	FADD (ENSSCAG00000008309) #31	PPFIA1 (ENSSCAG00000008327)	CTTN (ENSSCAG00000008353)	ENSSCAG00000008366	SHANK2 (ENSSCAG00000008391)	ENSSCAG00000008438	CD59 (ENSSCAG00000008444)	FBXO3 (ENSSCAG00000008450)	LMO2 (ENSSCAG00000008456)	CAPRIN1 (ENSSCAG00000008500)
Flycatcher	MODERN SPECIES	24	ENSFALG00000025035	ENSFALG00000023990	ENSFALG00000025433	ENSFALG00000027414	ENSFALG00000015306	ENSFALG00000015300	ENSFALG00000004457	RAB3IL1 (ENSFALG00000004449)	ENSFALG00000004444	ENSFALG00000004442	ENSFALG00000004438	ENSFALG00000004419	ENSFALG00000004393	ENSFALG00000004367	DHCR7 (ENSFALG00000027432) #21	ENSFALG00000008807 #22	TPCN2 (ENSFALG00000008794) #23	CCND1 (ENSFALG00000001395) #24	LTO1 (ENSFALG00000027380)	FGF19 (ENSFALG00000028132) #26	FGF4 (ENSFALG00000023034) #27	FGF3 (ENSFALG00000001385) #28	ANO1 (ENSFALG00000001374) #30	FADD (ENSFALG00000026128) #31	PPFIA1 (ENSFALG00000001366)	CTTN (ENSFALG00000001357)	ENSFALG00000001347	ENSFALG00000024507	FBXO3 (ENSFALG00000001317)	LMO2 (ENSFALG00000001311)	CAPRIN1 (ENSFALG00000001291)
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00390000013180	ENSGT00940000167680	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Kakapo	MODERN SPECIES	21	LUZP2 (ENSSHBG00005014822)	ENSSHBG00005014825	GAS2 (ENSSHBG00005014830)	FANCF (ENSSHBG00005014840)	SLC17A6 (ENSSHBG00005014846)	ANO5 (ENSSHBG00005014862)	NELL1 (ENSSHBG00005014894)	SLC6A5 (ENSSHBG00005014909)	PRMT3 (ENSSHBG00005014924)	DBX1 (ENSSHBG00005014932)	NAV2 (ENSSHBG00005015084)	E2F8 (ENSSHBG00005015651)	CSRP3 (ENSSHBG00005015674)	ZDHHC13 (ENSSHBG00005015698)	DHCR7 (ENSSHBG00005015703) #21	NADSYN1 (ENSSHBG00005015719) #22	TPCN2 (ENSSHBG00005015810) #23	CCND1 (ENSSHBG00005016264) #24	LTO1 (ENSSHBG00005016276)	FGF19 (ENSSHBG00005016282) #26	FGF4 (ENSSHBG00005016290) #27	FGF3 (ENSSHBG00005016296) #28	ANO1 (ENSSHBG00005016323) #30	LRRC4C (ENSSHBG00005016412)	ENSSHBG00005016420	ENSSHBG00005016423	RAG1 (ENSSHBG00005016430)	ENSSHBG00005016434	ENSSHBG00005016435	ROGDI (ENSSHBG00005016437)	GLYR1 (ENSSHBG00005000522)
Golden eagle	MODERN SPECIES	7	ENSACCG00020010927	GAS2 (ENSACCG00020010937)	FANCF (ENSACCG00020010950)	SLC17A6 (ENSACCG00020010956)	ANO5 (ENSACCG00020011008)	NELL1 (ENSACCG00020011074)	SLC6A5 (ENSACCG00020011107)	PRMT3 (ENSACCG00020011129)	DBX1 (ENSACCG00020011145)	NAV2 (ENSACCG00020012419)	ENSACCG00020013387	E2F8 (ENSACCG00020013481)	CSRP3 (ENSACCG00020013533)	ZDHHC13 (ENSACCG00020013560)	DHCR7 (ENSACCG00020013601) #21	NADSYN1 (ENSACCG00020013624) #22	TPCN2 (ENSACCG00020013652) #23	CCND1 (ENSACCG00020013681) #24	LTO1 (ENSACCG00020013692)	FGF19 (ENSACCG00020013709) #26	FGF4 (ENSACCG00020013725) #27	FGF3 (ENSACCG00020013742) #28	ANO1 (ENSACCG00020013843) #30	FADD (ENSACCG00020013886) #31	PPFIA1 (ENSACCG00020013987)	CTTN (ENSACCG00020014072)	ENSACCG00020014090	ENSACCG00020014112	ENSACCG00020014182	ENSACCG00020014203	ENSACCG00020014239
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000167680	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Anatidae	ANCESTRAL SPECIES	50							ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00950000182990.a.a.b.a.b.b.a.a	ENSGT00950000182990.a.a.b.a.b.b.a.b.b.b	ENSGT00950000182990.a.a.b.a.b.b.a.b.b.a	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Pink-footed goose	MODERN SPECIES	39							PPP6R3 (ENSABRG00000019930)	ENSABRG00000019923	TESMIN (ENSABRG00000019921)	CPT1A (ENSABRG00000019913)	ENSABRG00000019905	ENSABRG00000019900	ENSABRG00000019898	ZDHHC13 (ENSABRG00000019892)	DHCR7 (ENSABRG00000019889) #21	NADSYN1 (ENSABRG00000019877) #22	TPCN2 (ENSABRG00000019875) #23	CCND1 (ENSABRG00000019865) #24	LTO1 (ENSABRG00000019863)	FGF19 (ENSABRG00000019861) #26	ENSABRG00000019858 #27	FGF3 (ENSABRG00000019857) #28	ANO1 (ENSABRG00000019808) #30	FADD (ENSABRG00000019800) #31	PPFIA1 (ENSABRG00000018499)	CTTN (ENSABRG00000017864)	ENSABRG00000017832	SHANK2 (ENSABRG00000017831)	ENSABRG00000017827	ENSABRG00000017826	CD59 (ENSABRG00000017825)
Duck	MODERN SPECIES	23	ENSAPLG00000013528	CD151 (ENSAPLG00000013662)	POLR2L (ENSAPLG00000023236)	TSPAN4 (ENSAPLG00000003602)	CHID1 (ENSAPLG00000003133)	AP2A2 (ENSAPLG00000016325)	MUC6 (ENSAPLG00000015143)	PPP6R3 (ENSAPLG00000015481)	ENSAPLG00000015918	CPT1A (ENSAPLG00000015970)	ENSAPLG00000001151	ENSAPLG00000017572	ENSAPLG00000002427	ZDHHC13 (ENSAPLG00000002449)	DHCR7 (ENSAPLG00000002980) #21	NADSYN1 (ENSAPLG00000003062) #22	TPCN2 (ENSAPLG00000003454) #23	ENSAPLG00000023856 #24	LTO1 (ENSAPLG00000004024)	FGF19 (ENSAPLG00000004286) #26	FGF4 (ENSAPLG00000022440) #27	FGF3 (ENSAPLG00000004435) #28	ANO1 (ENSAPLG00000004437) #30	FADD (ENSAPLG00000005051) #31	PPFIA1 (ENSAPLG00000005058)	CTTN (ENSAPLG00000005914)	ENSAPLG00000028380	ENSAPLG00000006385	ENSAPLG00000027417	ENSAPLG00000006513	ENSAPLG00000020680
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00390000013180.c	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00390000001738	ENSGT00940000160208	ENSGT00390000014700.b.a.a	ENSGT00940000159464	ENSGT00390000001802	ENSGT00390000006255.b	ENSGT00390000006297	ENSGT00950000182857.a.a.b.b	ENSGT01010000222725	ENSGT00950000182857.a.b	ENSGT00950000182857.a.a.b.a	ENSGT01050000244857.A.a.b	ENSGT00940000159515	ENSGT01090000259985.b.b.b.b	ENSGT00940000158300
Phasianidae_b	ANCESTRAL SPECIES	39	ENSGT00940000167680	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00390000001738	ENSGT00940000160208	ENSGT00390000014700.b.a.a	ENSGT00940000159464	ENSGT00390000001802	ENSGT00390000006255.b	ENSGT00390000006297	ENSGT00950000182857.a.a.b.b	ENSGT01010000222725	ENSGT00950000182857.a.b	ENSGT00950000182857.a.a.b.a	ENSGT01050000244857.A.a.b	ENSGT00940000159515	ENSGT01090000259985.b.b.b.b	ENSGT00940000158300
Chicken	MODERN SPECIES	34	ENSGALG00010024184	ENSGALG00010022630	FANCF (ENSGALG00010023778)	SLC17A6 (ENSGALG00010020328)	ANO5 (ENSGALG00010020315)	ENSGALG00010023766	NELL1 (ENSGALG00010020290)	SLC6A5 (ENSGALG00010020232)	PRMT3 (ENSGALG00010020215)	LEUTX (ENSGALG00010020181)	NAV2 (ENSGALG00010020125)	E2F8 (ENSGALG00010021036)	CSRP3 (ENSGALG00010021030)	ZDHHC13 (ENSGALG00010021020)	DHCR7 (ENSGALG00010020994) #21	NADSYN1 (ENSGALG00010020987) #22	VPS51 (ENSGALG00010020967)	ENSGALG00010020947	BET1L (ENSGALG00010020936)	RIC8A (ENSGALG00010020925)	SIRT3 (ENSGALG00010020906)	PSMD13 (ENSGALG00010020894)	ENSGALG00010020854	PGGHG (ENSGALG00010020839)	IFITM5 (ENSGALG00010020810)	ENSGALG00010020824	B4GALNT4 (ENSGALG00010020770)	PKP3 (ENSGALG00010020739)	SIGIRR (ENSGALG00010020734)	ANO9 (ENSGALG00010020727)	PTDSS2 (ENSGALG00010020721)
Turkey	MODERN SPECIES	25	ENSMGAG00000002609	ANO9 (ENSMGAG00000002691)	B4GALNT4 (ENSMGAG00000002554)	PSMD13 (ENSMGAG00000002471)	ENSMGAG00000002496	IFITM5 (ENSMGAG00000002529)	ENSMGAG00000017868	ENSMGAG00000002538	ENSMGAG00000002545	ENSMGAG00000002427	ENSMGAG00000002457	ENSMGAG00000002643	ENSMGAG00000022141	ENSMGAG00000002680	ENSMGAG00000002390 #21	ENSMGAG00000002415 #22	ENSMGAG00000018205	ENSMGAG00000017350	CALCB (ENSMGAG00000006766)	ENSMGAG00000006737	ENSMGAG00000006695	ENSMGAG00000020746	PSMA1 (ENSMGAG00000006666)	ENSMGAG00000006566	ENSMGAG00000006557	ENSMGAG00000006534	ENSMGAG00000006522	ENSMGAG00000006473	ENSMGAG00000006398	ENSMGAG00000006379	ENSMGAG00000006393
Japanese quail	MODERN SPECIES	23	ANO3 (ENSCJPG00005015305)	ENSCJPG00005015303	GAS2 (ENSCJPG00005015302)	FANCF (ENSCJPG00005015301)	SLC17A6 (ENSCJPG00005015299)	ANO5 (ENSCJPG00005015240)	NELL1 (ENSCJPG00005014668)	SLC6A5 (ENSCJPG00005014612)	PRMT3 (ENSCJPG00005014611)	DBX1 (ENSCJPG00005014610)	NAV2 (ENSCJPG00005013896)	E2F8 (ENSCJPG00005013895)	CSRP3 (ENSCJPG00005013894)	ZDHHC13 (ENSCJPG00005013888)	DHCR7 (ENSCJPG00005013887) #21	NADSYN1 (ENSCJPG00005013780) #22	VPS51 (ENSCJPG00005013779)	BET1L (ENSCJPG00005013778)	RIC8A (ENSCJPG00005013777)	SIRT3 (ENSCJPG00005013776)	PSMD13 (ENSCJPG00005013734)	ENSCJPG00005013730	PGGHG (ENSCJPG00005013718)	IFITM5 (ENSCJPG00005013713)	ENSCJPG00005013711	ENSCJPG00005013709	ENSCJPG00005013708	B4GALNT4 (ENSCJPG00005013705)	PKP3 (ENSCJPG00005013704)	SIGIRR (ENSCJPG00005013703)	ANO9 (ENSCJPG00005013702)
African ostrich	MODERN SPECIES	1069	SLC5A12 (ENSSCUG00000018508)	ANO3 (ENSSCUG00000018530)	LUZP2 (ENSSCUG00000018548)	GAS2 (ENSSCUG00000018552)	SLC17A6 (ENSSCUG00000018554)	ANO5 (ENSSCUG00000018560)	NELL1 (ENSSCUG00000018571)	SLC6A5 (ENSSCUG00000018574)	PRMT3 (ENSSCUG00000018575)	DBX1 (ENSSCUG00000018578)	NAV2 (ENSSCUG00000018629)	E2F8 (ENSSCUG00000018693)	CSRP3 (ENSSCUG00000018696)	ZDHHC13 (ENSSCUG00000018700)	DHCR7 (ENSSCUG00000018702) #21	NADSYN1 (ENSSCUG00000018705) #22	TPCN2 (ENSSCUG00000018708) #23	CCND1 (ENSSCUG00000018718) #24	LTO1 (ENSSCUG00000018719)	FGF4 (ENSSCUG00000018721) #27	FGF3 (ENSSCUG00000018722) #28	ANO1 (ENSSCUG00000018728) #30	ENSSCUG00000018733	PPFIA1 (ENSSCUG00000018736)	CTTN (ENSSCUG00000018745)	SHANK2 (ENSSCUG00000018749)	ENSSCUG00000018751	ENSSCUG00000018752	CD59 (ENSSCUG00000018756)	FBXO3 (ENSSCUG00000018757)	LMO2 (ENSSCUG00000018758)
Australian saltwater crocodile	MODERN SPECIES	64	ENSCPRG00005007854	GAS2 (ENSCPRG00005007880)	SLC17A6 (ENSCPRG00005007896)	ENSCPRG00005007899	ANO5 (ENSCPRG00005007913)	NELL1 (ENSCPRG00005008216)	SLC6A5 (ENSCPRG00005009448)	PRMT3 (ENSCPRG00005009456)	ENSCPRG00005009478	DBX1 (ENSCPRG00005009481)	NAV2 (ENSCPRG00005009511)	E2F8 (ENSCPRG00005009552)	ENSCPRG00005009559	ZDHHC13 (ENSCPRG00005009568)	DHCR7 (ENSCPRG00005009574) #21	NADSYN1 (ENSCPRG00005009582) #22	TPCN2 (ENSCPRG00005009596) #23	CCND1 (ENSCPRG00005009618) #24	ENSCPRG00005009620 #25	FGF19 (ENSCPRG00005009629) #26	FGF4 (ENSCPRG00005009636) #27	FGF3 (ENSCPRG00005009656) #28	ANO1 (ENSCPRG00005009663) #30	FADD (ENSCPRG00005009695) #31	PPFIA1 (ENSCPRG00005009708)	CTTN (ENSCPRG00005009752)	SHANK2 (ENSCPRG00005009774)	ENSCPRG00005009814	ENSCPRG00005009819	ENSCPRG00005009826	ENSCPRG00005009843
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361.l	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361.l	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Goode s thornscrub tortoise	MODERN SPECIES	18	FANCF (ENSGEVG00005000814)	SLC17A6 (ENSGEVG00005000785)	ENSGEVG00005000770	ANO5 (ENSGEVG00005000721)	NELL1 (ENSGEVG00005000573)	SLC6A5 (ENSGEVG00005000433)	PRMT3 (ENSGEVG00005000382)	HTATIP2 (ENSGEVG00005000355)	DBX1 (ENSGEVG00005000338)	ENSGEVG00005000287	ENSGEVG00005000202	E2F8 (ENSGEVG00005018626)	CSRP3 (ENSGEVG00005018598)	ZDHHC13 (ENSGEVG00005018497)	DHCR7 (ENSGEVG00005018381) #21	NADSYN1 (ENSGEVG00005018335) #22	TPCN2 (ENSGEVG00005018241) #23	CCND1 (ENSGEVG00005018203) #24	LTO1 (ENSGEVG00005018185)	FGF19 (ENSGEVG00005018136) #26	FGF4 (ENSGEVG00005018058) #27	FGF3 (ENSGEVG00005018030) #28	ANO1 (ENSGEVG00005017866) #30	FADD (ENSGEVG00005017827) #31	PPFIA1 (ENSGEVG00005017733)	CTTN (ENSGEVG00005017687)	ENSGEVG00005017488	ENSGEVG00005017454	ENSGEVG00005017411	ENSGEVG00005017369	CD59 (ENSGEVG00005017352)
Abingdon island giant tortoise	MODERN SPECIES	6													CSRP3 (ENSCABG00000006722)	ZDHHC13 (ENSCABG00000006724)	DHCR7 (ENSCABG00000006729) #21	NADSYN1 (ENSCABG00000006733) #22	TPCN2 (ENSCABG00000006759) #23	CCND1 (ENSCABG00000006765) #24	LTO1 (ENSCABG00000006770)	DYNLT3 (ENSCABG00000006771)	ENSCABG00000006773	ENSCABG00000006775	XK (ENSCABG00000006777)	LANCL3 (ENSCABG00000006778)
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A.kc	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361.l	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Three-toed box turtle	MODERN SPECIES	40	ENSTMTG00000001022	GAS2 (ENSTMTG00000001036)	FANCF (ENSTMTG00000001047)	SLC17A6 (ENSTMTG00000001054)	ANO5 (ENSTMTG00000001074)	NELL1 (ENSTMTG00000001201)	SLC6A5 (ENSTMTG00000001511)	PRMT3 (ENSTMTG00000001540)	HTATIP2 (ENSTMTG00000001558)	DBX1 (ENSTMTG00000001572)	NAV2 (ENSTMTG00000001914)	E2F8 (ENSTMTG00000004878)	CSRP3 (ENSTMTG00000004966)	ZDHHC13 (ENSTMTG00000004985)	DHCR7 (ENSTMTG00000005024) #21	NADSYN1 (ENSTMTG00000005047) #22	TPCN2 (ENSTMTG00000005101) #23	ENSTMTG00000005160	CCND1 (ENSTMTG00000005181) #24	LTO1 (ENSTMTG00000005195)	FGF19 (ENSTMTG00000005212) #26	FGF4 (ENSTMTG00000005231) #27	FGF3 (ENSTMTG00000005246) #28	ENSTMTG00000005270 #30	ENSTMTG00000005318 #30	FADD (ENSTMTG00000005325) #31	PPFIA1 (ENSTMTG00000005454)	CTTN (ENSTMTG00000007686)	SHANK2 (ENSTMTG00000007719)	ENSTMTG00000007782	ENSTMTG00000007801
painted turtle	MODERN SPECIES	802					ENSCPBG00000014020	ENSCPBG00000014024	SLC6A5 (ENSCPBG00000014028)	PRMT3 (ENSCPBG00000014034)	HTATIP2 (ENSCPBG00000014041)	DBX1 (ENSCPBG00000014043)	NAV2 (ENSCPBG00000014050)	E2F8 (ENSCPBG00000014068)	CSRP3 (ENSCPBG00000014072)	ZDHHC13 (ENSCPBG00000014073)	DHCR7 (ENSCPBG00000014076) #21	NADSYN1 (ENSCPBG00000014079) #22	LCTL (ENSCPBG00000014087)	ZWILCH (ENSCPBG00000014089)	RPL4 (ENSCPBG00000014091)	SNAPC5 (ENSCPBG00000014100)	MAP2K1 (ENSCPBG00000014102)	ENSCPBG00000014108	DIS3L (ENSCPBG00000014111)	MEGF11 (ENSCPBG00000014150)	RAB11A (ENSCPBG00000014614)	DENND4A (ENSCPBG00000014626)	SLC24A1 (ENSCPBG00000014637)	INTS14 (ENSCPBG00000014639)	HACD3 (ENSCPBG00000014643)	DPP8 (ENSCPBG00000014645)	IGDCC4 (ENSCPBG00000014652)
Chinese turtle	MODERN SPECIES	157	ANO3 (ENSPSIG00000003839)	ENSPSIG00000003769	LUZP2 (ENSPSIG00000003751)	GAS2 (ENSPSIG00000003747)	SLC17A6 (ENSPSIG00000016821)	ANO5 (ENSPSIG00000015336)	NELL1 (ENSPSIG00000014262)	SLC6A5 (ENSPSIG00000012480)	PRMT3 (ENSPSIG00000012339)	DBX1 (ENSPSIG00000012138)	NAV2 (ENSPSIG00000009374)	E2F8 (ENSPSIG00000008707)	CSRP3 (ENSPSIG00000008192)	ZDHHC13 (ENSPSIG00000005720)	DHCR7 (ENSPSIG00000016888) #21	NADSYN1 (ENSPSIG00000013537) #22	TPCN2 (ENSPSIG00000012409) #23	CCND1 (ENSPSIG00000010300) #24	LTO1 (ENSPSIG00000009754)	FGF19 (ENSPSIG00000009409) #26	FGF4 (ENSPSIG00000009214) #27	FGF3 (ENSPSIG00000008796) #28
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000167680	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000016309	ENSGT00940000153571.b
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000156257	ENSGT00390000013180	ENSGT00940000167680	ENSGT00940000155755	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b.vc.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199.e
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000156257	ENSGT00390000013180	ENSGT00940000167680	ENSGT00940000155755	ENSGT00940000155891	ENSGT00940000155692.d	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b.vc.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199.e
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000156257	ENSGT00390000013180	ENSGT00940000167680	ENSGT00940000155755	ENSGT00940000155891	ENSGT00940000155692.d	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00940000166897 #25	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b.vc.b	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199.e
Eastern brown snake	MODERN SPECIES	1	SLC5A12 (ENSPTXG00000003360)	ANO3 (ENSPTXG00000003363)	LUZP2 (ENSPTXG00000003365)	ENSPTXG00000003366	GAS2 (ENSPTXG00000003367)	SLC17A6 (ENSPTXG00000003368)	ANO5 (ENSPTXG00000003381)	NELL1 (ENSPTXG00000003719)	SLC6A5 (ENSPTXG00000003742)	PRMT3 (ENSPTXG00000003744)	DBX1 (ENSPTXG00000003745)	NAV2 (ENSPTXG00000003752)	CSRP3 (ENSPTXG00000004519)	ZDHHC13 (ENSPTXG00000004521)	DHCR7 (ENSPTXG00000004524) #21	NADSYN1 (ENSPTXG00000004535) #22	TPCN2 (ENSPTXG00000004711) #23	CCND1 (ENSPTXG00000004712) #24	ENSPTXG00000004713 #25	FGF19 (ENSPTXG00000004714) #26	FGF4 (ENSPTXG00000004715) #27	FGF3 (ENSPTXG00000004717) #28	ANO1 (ENSPTXG00000004727) #30	ENSPTXG00000007334	FADD (ENSPTXG00000007337) #31	PPFIA1 (ENSPTXG00000007340)	CTTN (ENSPTXG00000007342)	SHANK2 (ENSPTXG00000007344)	ENSPTXG00000007345	CD59 (ENSPTXG00000007347)	FBXO3 (ENSPTXG00000007348)
Mainland tiger snake	MODERN SPECIES	9	LUZP2 (ENSNSUG00000011693)	ENSNSUG00000011683	ENSNSUG00000011682	GAS2 (ENSNSUG00000011681)	SLC17A6 (ENSNSUG00000011680)	ENSNSUG00000011679	NELL1 (ENSNSUG00000011668)	SLC6A5 (ENSNSUG00000011667)	ENSNSUG00000011666	PRMT3 (ENSNSUG00000011641)	DBX1 (ENSNSUG00000011639)	NAV2 (ENSNSUG00000011291)	CSRP3 (ENSNSUG00000011268)	ZDHHC13 (ENSNSUG00000011202)	DHCR7 (ENSNSUG00000011199) #21	NADSYN1 (ENSNSUG00000011018) #22	CCND1 (ENSNSUG00000011011) #24	ENSNSUG00000011000 #25	FGF19 (ENSNSUG00000010998) #26	FGF4 (ENSNSUG00000010993) #27	FGF3 (ENSNSUG00000010990) #28	ANO1 (ENSNSUG00000010983) #30	FADD (ENSNSUG00000010978) #31	PPFIA1 (ENSNSUG00000010311)	CTTN (ENSNSUG00000010306)	SHANK2 (ENSNSUG00000010257)	ENSNSUG00000010256	CD59 (ENSNSUG00000010255)	FBXO3 (ENSNSUG00000010252)	ENSNSUG00000010250	CAPRIN1 (ENSNSUG00000009334)
Indian cobra	MODERN SPECIES		LUZP2 (ENSNNAG00000016527)	ENSNNAG00000016593	GAS2 (ENSNNAG00000016599)	SLC17A6 (ENSNNAG00000016611)	ANO5 (ENSNNAG00000016633)	ENSNNAG00000004241	NELL1 (ENSNNAG00000004310)	SLC6A5 (ENSNNAG00000004935)	PRMT3 (ENSNNAG00000005046)	DBX1 (ENSNNAG00000005086)	NAV2 (ENSNNAG00000005112)	CSRP3 (ENSNNAG00000005272)	ZDHHC13 (ENSNNAG00000005301)	ENSNNAG00000005365 #21	ENSNNAG00000005578 #21	NADSYN1 (ENSNNAG00000005666) #22	TPCN2 (ENSNNAG00000006411) #23	CCND1 (ENSNNAG00000006496) #24	ENSNNAG00000006511 #25	FGF19 (ENSNNAG00000006529) #26	FGF4 (ENSNNAG00000006539) #27	FGF3 (ENSNNAG00000006555) #28	ANO1 (ENSNNAG00000006590) #30	FADD (ENSNNAG00000006633) #31	PPFIA1 (ENSNNAG00000006663)	CTTN (ENSNNAG00000006882)	SHANK2 (ENSNNAG00000006944)	ENSNNAG00000007168	CD59 (ENSNNAG00000007176)	FBXO3 (ENSNNAG00000007197)	LMO2 (ENSNNAG00000007220)
Lizard	MODERN SPECIES		NELL1 (ENSACAG00000015311)	SLC6A5 (ENSACAG00000015402)	ENSACAG00000042630	PRMT3 (ENSACAG00000015533)	DBX1 (ENSACAG00000036229)	ENSACAG00000044855	ENSACAG00000040452	ENSACAG00000041485	NAV2 (ENSACAG00000015634)	ENSACAG00000042429	E2F8 (ENSACAG00000015743)	CSRP3 (ENSACAG00000015769)	ZDHHC13 (ENSACAG00000028725)	ENSACAG00000015826 #21	ENSACAG00000044329	ENSACAG00000015847 #22	TPCN2 (ENSACAG00000015933) #23	ENSACAG00000040695	ENSACAG00000042512	ENSACAG00000034646	CCND1 (ENSACAG00000016001) #24	LTO1 (ENSACAG00000016039)	FGF19 (ENSACAG00000016055) #26	FGF4 (ENSACAG00000036069) #27	FGF3 (ENSACAG00000040483) #28	ENSACAG00000016081 #30	ENSACAG00000036690	ENSACAG00000044506	SLC1A2 (ENSACAG00000004365)	ENSACAG00000041619	ENSACAG00000004544
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000167680	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b
Common wall lizard	MODERN SPECIES		FANCF (ENSPMRG00000007151)	SLC17A6 (ENSPMRG00000007139)	ENSPMRG00000007132	ANO5 (ENSPMRG00000007058)	NELL1 (ENSPMRG00000006954)	SLC6A5 (ENSPMRG00000006889)	ENSPMRG00000006880	DBX1 (ENSPMRG00000006874)	ENSPMRG00000006869	NAV2 (ENSPMRG00000006703)	ENSPMRG00000006654	E2F8 (ENSPMRG00000006649)	ENSPMRG00000006644	ZDHHC13 (ENSPMRG00000006612)	ENSPMRG00000006593 #21	NADSYN1 (ENSPMRG00000006580) #22	ENSPMRG00000006570 #21	TPCN2 (ENSPMRG00000006421) #23	CCND1 (ENSPMRG00000006384) #24	LTO1 (ENSPMRG00000006379)	FGF19 (ENSPMRG00000006374) #26	ENSPMRG00000006367	FGF4 (ENSPMRG00000006363) #27	FGF3 (ENSPMRG00000006361) #28	ANO1 (ENSPMRG00000006308) #30	FADD (ENSPMRG00000006296) #31	PPFIA1 (ENSPMRG00000003817)	CTTN (ENSPMRG00000003359)	SHANK2 (ENSPMRG00000002826)	ENSPMRG00000002685	ENSPMRG00000002678
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000002980	GAS2 (ENSSMRG00000003046)	FANCF (ENSSMRG00000003056)	SLC17A6 (ENSSMRG00000003122)	ENSSMRG00000003131	ANO5 (ENSSMRG00000003134)	NELL1 (ENSSMRG00000003314)	SLC6A5 (ENSSMRG00000003765)	PRMT3 (ENSSMRG00000003784)	DBX1 (ENSSMRG00000003811)	NAV2 (ENSSMRG00000003861)	E2F8 (ENSSMRG00000003932)	CSRP3 (ENSSMRG00000003940)	ZDHHC13 (ENSSMRG00000003941)	DHCR7 (ENSSMRG00000003977) #21	NADSYN1 (ENSSMRG00000003982) #22	ENSSMRG00000004015	TPCN2 (ENSSMRG00000004016) #23	CCND1 (ENSSMRG00000004053) #24	ENSSMRG00000004057 #25	FGF19 (ENSSMRG00000004061) #26	FGF4 (ENSSMRG00000004065) #27	FGF3 (ENSSMRG00000004069) #28	ENSSMRG00000004072	ANO1 (ENSSMRG00000004087) #30	FADD (ENSSMRG00000004117) #31	PPFIA1 (ENSSMRG00000004131)	CTTN (ENSSMRG00000004171)	SHANK2 (ENSSMRG00000004195)	ENSSMRG00000004210	ENSSMRG00000004212
tuatara	DUPLICATION
tuatara	MODERN SPECIES	277												E2F8 (ENSSPUG00000012083)	CSRP3 (ENSSPUG00000012299)	ZDHHC13 (ENSSPUG00000012318)	DHCR7 (ENSSPUG00000012347) #21	ENSSPUG00000012371 #22	ENSSPUG00000012397	CCND1 (ENSSPUG00000012410) #24	LTO1 (ENSSPUG00000012427)	FGF19 (ENSSPUG00000012438) #26	FGF4 (ENSSPUG00000012450) #27	FGF3 (ENSSPUG00000012460) #28	ANO1 (ENSSPUG00000012476) #30	FADD (ENSSPUG00000012511) #31	PPFIA1 (ENSSPUG00000012523)	CTTN (ENSSPUG00000012593)	ENSSPUG00000012704	ENSSPUG00000012784	ENSSPUG00000012794
tuatara	MODERN SPECIES	519																ENSSPUG00000013614 #22	TPCN2 (ENSSPUG00000013735) #23
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309
Platypus	MODERN SPECIES	14	ENSOANG00000013128	LUZP2 (ENSOANG00000041544)	ENSOANG00000043692	GAS2 (ENSOANG00000013127)	SLC17A6 (ENSOANG00000013126)	ANO5 (ENSOANG00000013125)	NELL1 (ENSOANG00000011284)	SLC6A5 (ENSOANG00000011285)	PRMT3 (ENSOANG00000011286)	HTATIP2 (ENSOANG00000011287)	DBX1 (ENSOANG00000037487)	NAV2 (ENSOANG00000011288)	E2F8 (ENSOANG00000011290)	CSRP3 (ENSOANG00000048468)	ENSOANG00000011292	NADSYN1 (ENSOANG00000011297) #22	TPCN2 (ENSOANG00000011298) #23	CCND1 (ENSOANG00000037670) #24	LTO1 (ENSOANG00000007415)	FGF19 (ENSOANG00000007414) #26	FGF4 (ENSOANG00000046993) #27	ENSOANG00000007412 #28	ANO1 (ENSOANG00000007411) #30	ENSOANG00000049034	PPFIA1 (ENSOANG00000007409)	CTTN (ENSOANG00000007408)	SHANK2 (ENSOANG00000007407)	ENSOANG00000007405	ENSOANG00000007404	FBXO3 (ENSOANG00000007403)	LMO2 (ENSOANG00000042666)
Theria	ANCESTRAL SPECIES	8	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b.h	ENSGT01030000234639.A.b.a.b.a.a.b.g.a.a	ENSGT01030000234639.A.b.a.b.a.a.b.g.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000011381.e	ENSGT00930000151070	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b.h	ENSGT01030000234639.A.b.a.b.a.a.b.g.a.a	ENSGT01030000234639.A.b.a.b.a.a.b.g.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000011381.e	ENSGT00930000151070	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b.h	ENSGT01030000234639.A.b.a.b.a.a.b.g.a.a	ENSGT01030000234639.A.b.a.b.a.a.b.g.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000011381.e	ENSGT00930000151070	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588
Diprotodontia_a	DUPLICATION
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152.m #22	ENSGT01030000234639.A.b.a.b.a.a.b.h	ENSGT01030000234639.A.b.a.b.a.a.b.g.b.f	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000011381.e	ENSGT01050000244855.A.a.b.b.a	ENSGT00930000151070.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588
Common wonbat	MODERN SPECIES	714	IGHMBP2 (ENSVURG00010024593)	ENSVURG00010024590	MRGPRF (ENSVURG00010024588)	TPCN2 (ENSVURG00010024582) #23	CCND1 (ENSVURG00010024576) #24	LTO1 (ENSVURG00010024575)	FGF19 (ENSVURG00010024573) #26	FGF4 (ENSVURG00010024570) #27	FGF3 (ENSVURG00010024564) #28	ANO1 (ENSVURG00010024551) #30	ENSVURG00010024549 #31	PPFIA1 (ENSVURG00010024528)	CTTN (ENSVURG00010024517)	SHANK2 (ENSVURG00010024503)	DHCR7 (ENSVURG00010024484) #21	ENSVURG00010024475 #22
koala	MODERN SPECIES	209	ENSPCIG00000034514	TPCN2 (ENSPCIG00000005636) #23	CCND1 (ENSPCIG00000009078) #24	ENSPCIG00000009077	FGF19 (ENSPCIG00000004914) #26	FGF4 (ENSPCIG00000009076) #27	FGF3 (ENSPCIG00000009053) #28	ANO1 (ENSPCIG00000009030) #30	ENSPCIG00000009028 #31	ENSPCIG00000009025	PPFIA1 (ENSPCIG00000009009)	CTTN (ENSPCIG00000008932)	SHANK2 (ENSPCIG00000008921)	ENSPCIG00000035287	DHCR7 (ENSPCIG00000019135) #21	ENSPCIG00000019137 #22	ENSPCIG00000019138	ENSPCIG00000018831	ENSPCIG00000018821	ENSPCIG00000033218	ENSPCIG00000032536	ENSPCIG00000031868	ENSPCIG00000012856	OSBPL5 (ENSPCIG00000030325)	ENSPCIG00000030324	ENSPCIG00000030323	ENSPCIG00000030317	CARS1 (ENSPCIG00000030315)	NAP1L4 (ENSPCIG00000030311)	ENSPCIG00000030309	ENSPCIG00000030307
Diprotodontia_a	ANCESTRAL SPECIES	47						ENSGT00940000153665.b.a.a	ENSGT00940000156365	ENSGT00940000154035.b	ENSGT00940000157088	ENSGT00940000166717.I	ENSGT00390000012239	ENSGT00390000000367	ENSGT00950000183034.A	ENSGT00390000017898	ENSGT01010000222287.B.b.a.a.a	ENSGT00390000010152.n #22	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000155947	ENSGT00940000154477	ENSGT00940000156324	ENSGT00390000006356	ENSGT00940000161020	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a	ENSGT00940000155063	ENSGT01090000259985.b.b.b.a.a.b	ENSGT01090000259985.b.a.b.a.b	ENSGT01090000259985.b.a.b.a.a	ENSGT01090000259985.b.a.a.a
Common wonbat	MODERN SPECIES	1041										EPHA3 (ENSVURG00010014542)	ENSVURG00010014582	C3orf38 (ENSVURG00010014599)	ZNF654 (ENSVURG00010014604)	CGGBP1 (ENSVURG00010014612)	HTR1F (ENSVURG00010014615)	ENSVURG00010014618 #22	POU1F1 (ENSVURG00010014629)	CHMP2B (ENSVURG00010014647)	VGLL3 (ENSVURG00010014686)	CADM2 (ENSVURG00010014709)	ENSVURG00010014756	ENSVURG00010014772	ENSVURG00010014781	ENSVURG00010014786	ENSVURG00010014793	ENSVURG00010014797	GBE1 (ENSVURG00010014817)	ENSVURG00010014836	ENSVURG00010014848	ENSVURG00010014853	ROBO1 (ENSVURG00010014872)
koala	MODERN SPECIES	260				NSUN3 (ENSPCIG00000026987)	ARL13B (ENSPCIG00000026984)	PROS1 (ENSPCIG00000026978)	EPHA3 (ENSPCIG00000026968)	ENSPCIG00000012485	ENSPCIG00000012486	C3orf38 (ENSPCIG00000012487)	ENSPCIG00000012489	ZNF654 (ENSPCIG00000012488)	CGGBP1 (ENSPCIG00000012490)	HTR1F (ENSPCIG00000012491)	ENSPCIG00000012492	ENSPCIG00000012494 #22
Wallaby	MODERN SPECIES	8163																NADSYN1 (ENSMEUG00000000744) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000029471	ENSSHAG00000000514	ENSSHAG00000000834	ENSSHAG00000002638	TPCN2 (ENSSHAG00000004691) #23	CCND1 (ENSSHAG00000032182) #24	LTO1 (ENSSHAG00000031356)	FGF19 (ENSSHAG00000031311) #26	ANO1 (ENSSHAG00000000720) #30	ENSSHAG00000031774 #31	PPFIA1 (ENSSHAG00000006159)	CTTN (ENSSHAG00000027102)	SHANK2 (ENSSHAG00000031726)	ENSSHAG00000008066	DHCR7 (ENSSHAG00000025809) #21	ENSSHAG00000007467 #22	ENSSHAG00000007247	ENSSHAG00000006442	ENSSHAG00000022758	ENSSHAG00000005157	ENSSHAG00000031101	ENSSHAG00000004350	ENSSHAG00000025558	ENSSHAG00000002355	ENSSHAG00000000964	ENSSHAG00000030513	ENSSHAG00000023560	ENSSHAG00000031724	ENSSHAG00000020810	ENSSHAG00000002233	OSBPL5 (ENSSHAG00000004780)
Opossum	MODERN SPECIES	4	ENSMODG00000004080 #24	ENSMODG00000038046 #24	ENSMODG00000049009	ENSMODG00000029429 #23	ENSMODG00000004073	ENSMODG00000047370	MRGPRF (ENSMODG00000004054)	ENSMODG00000004049	IGHMBP2 (ENSMODG00000004040)	MRPL21 (ENSMODG00000045992)	ENSMODG00000046302	ENSMODG00000003995	TESMIN (ENSMODG00000003549)	GAL (ENSMODG00000012764)	ENSMODG00000007394	NADSYN1 (ENSMODG00000007384) #22	ENSMODG00000007370	ENSMODG00000007359	ENSMODG00000047067	ENSMODG00000007344	ENSMODG00000007340	ENSMODG00000024123	ENSMODG00000007244	ENSMODG00000047236	ENSMODG00000036774	ENSMODG00000024125	ENSMODG00000024127	MRGPRE (ENSMODG00000007185)	OSBPL5 (ENSMODG00000007169)	ENSMODG00000007115	CARS1 (ENSMODG00000007058)
Eutheria	ANCESTRAL SPECIES	3	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Glires	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Rodentia	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Kangaroo rat	MODERN SPECIES	373	ENSDORG00000013895	Cpt1a (ENSDORG00000011817)	Mrpl21 (ENSDORG00000025967)	Ighmbp2 (ENSDORG00000026350)	Mrgprd (ENSDORG00000023697)	Mrgprf (ENSDORG00000009826)	Tpcn2 (ENSDORG00000002980) #23	ENSDORG00000029122 #24	LTO1 (ENSDORG00000012520)	ENSDORG00000024888 #27	Ano1 (ENSDORG00000009084) #30	Ppfia1 (ENSDORG00000016082)	Cttn (ENSDORG00000009315)	Shank2 (ENSDORG00000011912)	Dhcr7 (ENSDORG00000026094) #21	Nadsyn1 (ENSDORG00000014370) #22	Mrgpre (ENSDORG00000015977)	Osbpl5 (ENSDORG00000011403)	ENSDORG00000029883	Cars (ENSDORG00000003786)	Nap1l4 (ENSDORG00000016630)	Phlda2 (ENSDORG00000016629)	Slc22a18 (ENSDORG00000027634)	Kcnq1 (ENSDORG00000004723)	Trpm5 (ENSDORG00000001508)	ENSDORG00000025519	ENSDORG00000001506	Tspan32 (ENSDORG00000011426)	Th (ENSDORG00000010289)	ENSDORG00000023976	Igf2 (ENSDORG00000023345)
Myomorpha	ANCESTRAL SPECIES	4	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Muroidea	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Muroidea_A	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Cricetidae	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Cricetinae	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Chinese hamster chok1gshd	MODERN SPECIES	401	Tpcn2 (ENSCGRG00001010845) #23	ENSCGRG00001001688	Ccnd1 (ENSCGRG00001022268) #24	LTO1 (ENSCGRG00001016809)	Fgf15 (ENSCGRG00001006635) #26	Fgf4 (ENSCGRG00001018014) #27	Fgf3 (ENSCGRG00001022007) #28	Ano1 (ENSCGRG00001024262) #30	Fadd (ENSCGRG00001007270) #31	Ppfia1 (ENSCGRG00001010485)	Cttn (ENSCGRG00001016778)	ENSCGRG00001012540	ENSCGRG00001014608	Acte1 (ENSCGRG00001020527)	Dhcr7 (ENSCGRG00001000860) #21	Nadsyn1 (ENSCGRG00001009314) #22	Mrgpre (ENSCGRG00001001111)	Mrgprg (ENSCGRG00001012867)	Osbpl5 (ENSCGRG00001012618)	ENSCGRG00001023145	Tnfrsf26 (ENSCGRG00001014733)	Cars (ENSCGRG00001018006)	Nap1l4 (ENSCGRG00001017042)	Phlda2 (ENSCGRG00001023142)	Slc22a18 (ENSCGRG00001018930)	Cdkn1c (ENSCGRG00001014898)	Kcnq1 (ENSCGRG00001020941)	Trpm5 (ENSCGRG00001020794)	Cd81 (ENSCGRG00001013376)	Tspan32 (ENSCGRG00001014505)	Ascl2 (ENSCGRG00001010853)
Golden Hamster	MODERN SPECIES	617	Tpcn2 (ENSMAUG00000018105) #23	ENSMAUG00000020083	ENSMAUG00000001942	Ccnd1 (ENSMAUG00000017636) #24	LTO1 (ENSMAUG00000018685)	Fgf15 (ENSMAUG00000018536) #26	ENSMAUG00000018543 #27	Fgf3 (ENSMAUG00000017622) #28	Ano1 (ENSMAUG00000020665) #30	Fadd (ENSMAUG00000017656) #31	Ppfia1 (ENSMAUG00000019398)	Cttn (ENSMAUG00000018999)	Shank2 (ENSMAUG00000020561)	Acte1 (ENSMAUG00000018219)	Dhcr7 (ENSMAUG00000017958) #21	Nadsyn1 (ENSMAUG00000018638) #22	Mrgpre (ENSMAUG00000019867)	Mrgprg (ENSMAUG00000002319)	Osbpl5 (ENSMAUG00000018579)	ENSMAUG00000017790	Tnfrsf26 (ENSMAUG00000020091)	Cars (ENSMAUG00000019542)	Nap1l4 (ENSMAUG00000019725)	Phlda2 (ENSMAUG00000019087)	Slc22a18 (ENSMAUG00000019948)	Cdkn1c (ENSMAUG00000017979)	Kcnq1 (ENSMAUG00000020417)	Trpm5 (ENSMAUG00000018047)	Tssc4 (ENSMAUG00000018732)	Cd81 (ENSMAUG00000018204)	Tspan32 (ENSMAUG00000019837)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Prairie vole	MODERN SPECIES	16	Tpcn2 (ENSMOCG00000013268) #23	ENSMOCG00000021239	Ccnd1 (ENSMOCG00000013593) #24	LTO1 (ENSMOCG00000011612)	Fgf15 (ENSMOCG00000020351) #26	ENSMOCG00000003096 #27	Fgf3 (ENSMOCG00000022933) #28	Ano1 (ENSMOCG00000014655) #30	Fadd (ENSMOCG00000021270) #31	Ppfia1 (ENSMOCG00000006756)	ENSMOCG00000008235	Cttn (ENSMOCG00000016443)	Shank2 (ENSMOCG00000005495)	Acte1 (ENSMOCG00000001514)	Dhcr7 (ENSMOCG00000011891) #21	Nadsyn1 (ENSMOCG00000015097) #22	Mrgprg (ENSMOCG00000012347)	Osbpl5 (ENSMOCG00000008055)	ENSMOCG00000006021	ENSMOCG00000004531	Cars (ENSMOCG00000020245)	Nap1l4 (ENSMOCG00000012976)	Phlda2 (ENSMOCG00000017066)	Slc22a18 (ENSMOCG00000021877)	Cdkn1c (ENSMOCG00000001521)	Kcnq1 (ENSMOCG00000016089)	Trpm5 (ENSMOCG00000013832)	Tssc4 (ENSMOCG00000001908)	ENSMOCG00000020744	Tspan32 (ENSMOCG00000016421)	Ascl2 (ENSMOCG00000003165)
Northern American deer mouse	MODERN SPECIES		Smim38 (ENSPEMG00000019158)	Ccnd1 (ENSPEMG00000018939) #24	LTO1 (ENSPEMG00000008663)	ENSPEMG00000027742	Fgf15 (ENSPEMG00000008128) #26	Fgf4 (ENSPEMG00000018637) #27	Fgf3 (ENSPEMG00000030989) #28	Ano1 (ENSPEMG00000019085) #30	Fadd (ENSPEMG00000025320) #31	Ppfia1 (ENSPEMG00000009542)	Cttn (ENSPEMG00000012118)	ENSPEMG00000002175	Shank2 (ENSPEMG00000015203)	Acte1 (ENSPEMG00000011345)	Dhcr7 (ENSPEMG00000018376) #21	Nadsyn1 (ENSPEMG00000003580) #22	Mrgpre (ENSPEMG00000002182)	Mrgprg (ENSPEMG00000006356)	Osbpl5 (ENSPEMG00000017884)	ENSPEMG00000024612	ENSPEMG00000015893	Cars (ENSPEMG00000009377)	Nap1l4 (ENSPEMG00000008380)	Phlda2 (ENSPEMG00000017657)	Slc22a18 (ENSPEMG00000017404)	Cdkn1c (ENSPEMG00000014816)	Kcnq1 (ENSPEMG00000008699)	Trpm5 (ENSPEMG00000017436)	Cd81 (ENSPEMG00000007474)	Tspan32 (ENSPEMG00000008088)	Ascl2 (ENSPEMG00000018213)
Murinae	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Mus	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Mus_A	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a.c	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Mus_B	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Mouse	MODERN SPECIES	16	Mrgprf (ENSMUSG00000031070)	Smim38 (ENSMUSG00000109305)	Tpcn2 (ENSMUSG00000048677) #23	Ccnd1 (ENSMUSG00000070348) #24	LTO1 (ENSMUSG00000031072)	Fgf15 (ENSMUSG00000031073) #26	Fgf4 (ENSMUSG00000050917) #27	Fgf3 (ENSMUSG00000031074) #28	Ano1 (ENSMUSG00000031075) #30	Fadd (ENSMUSG00000031077) #31	Ppfia1 (ENSMUSG00000037519)	Cttn (ENSMUSG00000031078)	Shank2 (ENSMUSG00000037541)	Acte1 (ENSMUSG00000031085)	Dhcr7 (ENSMUSG00000058454) #21	Nadsyn1 (ENSMUSG00000031090) #22	Mrgpre (ENSMUSG00000048965)	Mrgprg (ENSMUSG00000050276)	Osbpl5 (ENSMUSG00000037606)	Tnfrsf23 (ENSMUSG00000037613)	Tnfrsf22 (ENSMUSG00000010751)	Tnfrsf26 (ENSMUSG00000045362)	Cars (ENSMUSG00000010755)	Nap1l4 (ENSMUSG00000059119)	Phlda2 (ENSMUSG00000010760)	Slc22a18 (ENSMUSG00000000154)	Cdkn1c (ENSMUSG00000037664)	Kcnq1 (ENSMUSG00000009545)	Tssc4 (ENSMUSG00000045752)	Trpm5 (ENSMUSG00000009246)	Cd81 (ENSMUSG00000037706)
Mus_C	ANCESTRAL SPECIES	14	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Steppe mouse	MODERN SPECIES	3396	Mrgprf (ENSMSIG00000029547)	Tpcn2 (ENSMSIG00000029535) #23	Smim38 (ENSMSIG00000029534)	Ccnd1 (ENSMSIG00000029529) #24	LTO1 (ENSMSIG00000029520)	Fgf15 (ENSMSIG00000029515) #26	Fgf4 (ENSMSIG00000029514) #27	Fgf3 (ENSMSIG00000029512) #28	ENSMSIG00000029509	Ano1 (ENSMSIG00000029432) #30	Ppfia1 (ENSMSIG00000029361)	Cttn (ENSMSIG00000029316)	Shank2 (ENSMSIG00000029202)	Acte1 (ENSMSIG00000029184)	Dhcr7 (ENSMSIG00000029174) #21	Nadsyn1 (ENSMSIG00000029170) #22	Mrgpre (ENSMSIG00000029169)	Mrgprg (ENSMSIG00000029167)	ENSMSIG00000029165	Osbpl5 (ENSMSIG00000029128)
spretus	MODERN SPECIES	16	Mrgprd (MGP_SPRETEiJ_G0031872)	Mrgprf (MGP_SPRETEiJ_G0031871)	Tpcn2 (MGP_SPRETEiJ_G0031870) #23	LTO1 (MGP_SPRETEiJ_G0031869)	Ccnd1 (MGP_SPRETEiJ_G0031868) #24	Fgf15 (MGP_SPRETEiJ_G0031867) #26	Fgf4 (MGP_SPRETEiJ_G0031866) #27	Fgf3 (MGP_SPRETEiJ_G0031865) #28	Ano1 (MGP_SPRETEiJ_G0031864) #30	Fadd (MGP_SPRETEiJ_G0031863) #31	Ppfia1 (MGP_SPRETEiJ_G0031862)	Cttn (MGP_SPRETEiJ_G0031861)	Shank2 (MGP_SPRETEiJ_G0031860)	Acte1 (MGP_SPRETEiJ_G0031859)	Dhcr7 (MGP_SPRETEiJ_G0031858) #21	Nadsyn1 (MGP_SPRETEiJ_G0031857) #22	Mrgpre (MGP_SPRETEiJ_G0031856)	Mrgprg (MGP_SPRETEiJ_G0031855)	Osbpl5 (MGP_SPRETEiJ_G0031854)	Tnfrsf26 (MGP_SPRETEiJ_G0031853)	Cars (MGP_SPRETEiJ_G0031852)	Nap1l4 (MGP_SPRETEiJ_G0031851)	Phlda2 (MGP_SPRETEiJ_G0031850)	Slc22a18 (MGP_SPRETEiJ_G0031849)	Cdkn1c (MGP_SPRETEiJ_G0031848)	Kcnq1 (MGP_SPRETEiJ_G0031847)	Tssc4 (MGP_SPRETEiJ_G0031846)	Trpm5 (MGP_SPRETEiJ_G0031845)	Cd81 (MGP_SPRETEiJ_G0031844)	Tspan32 (MGP_SPRETEiJ_G0031843)	Ascl2 (MGP_SPRETEiJ_G0031842)
Ryukyu mouse	MODERN SPECIES	16	Mrgprd (MGP_CAROLIEiJ_G0030764)	Mrgprf (MGP_CAROLIEiJ_G0030763)	Tpcn2 (MGP_CAROLIEiJ_G0030762) #23	Ccnd1 (MGP_CAROLIEiJ_G0030761) #24	MGP_CAROLIEiJ_G0030760	Fgf15 (MGP_CAROLIEiJ_G0030759) #26	Fgf4 (MGP_CAROLIEiJ_G0030758) #27	Fgf3 (MGP_CAROLIEiJ_G0030757) #28	Ano1 (MGP_CAROLIEiJ_G0030756) #30	Fadd (MGP_CAROLIEiJ_G0030755) #31	Ppfia1 (MGP_CAROLIEiJ_G0030754)	Cttn (MGP_CAROLIEiJ_G0030753)	Shank2 (MGP_CAROLIEiJ_G0030752)	Acte1 (MGP_CAROLIEiJ_G0030751)	Dhcr7 (MGP_CAROLIEiJ_G0030750) #21	Nadsyn1 (MGP_CAROLIEiJ_G0030749) #22	Mrgpre (MGP_CAROLIEiJ_G0030748)	Mrgprg (MGP_CAROLIEiJ_G0030747)	Osbpl5 (MGP_CAROLIEiJ_G0030746)	MGP_CAROLIEiJ_G0030745	MGP_CAROLIEiJ_G0030744	MGP_CAROLIEiJ_G0030743	Cars (MGP_CAROLIEiJ_G0030742)	Nap1l4 (MGP_CAROLIEiJ_G0030741)	Phlda2 (MGP_CAROLIEiJ_G0030740)	Slc22a18 (MGP_CAROLIEiJ_G0030739)	Cdkn1c (MGP_CAROLIEiJ_G0030738)	Kcnq1 (MGP_CAROLIEiJ_G0030737)	Tssc4 (MGP_CAROLIEiJ_G0030736)	Trpm5 (MGP_CAROLIEiJ_G0030735)	Cd81 (MGP_CAROLIEiJ_G0030734)
Shrew mouse	MODERN SPECIES		Mrgprd (MGP_PahariEiJ_G0013959)	Mrgprf (MGP_PahariEiJ_G0013958)	Tpcn2 (MGP_PahariEiJ_G0013957) #23	Ccnd1 (MGP_PahariEiJ_G0013956) #24	MGP_PahariEiJ_G0013955	Fgf15 (MGP_PahariEiJ_G0013954) #26	Fgf4 (MGP_PahariEiJ_G0013953) #27	Fgf3 (MGP_PahariEiJ_G0013952) #28	Ano1 (MGP_PahariEiJ_G0013951) #30	Fadd (MGP_PahariEiJ_G0013950) #31	Ppfia1 (MGP_PahariEiJ_G0013949)	Cttn (MGP_PahariEiJ_G0013948)	Shank2 (MGP_PahariEiJ_G0013947)	Acte1 (MGP_PahariEiJ_G0013946)	MGP_PahariEiJ_G0013945 #21	Nadsyn1 (MGP_PahariEiJ_G0013944) #22	Mrgpre (MGP_PahariEiJ_G0013943)	Mrgprg (MGP_PahariEiJ_G0013942)	Osbpl5 (MGP_PahariEiJ_G0013941)	MGP_PahariEiJ_G0013940	Tnfrsf26 (MGP_PahariEiJ_G0013939)	Cars (MGP_PahariEiJ_G0013938)	Nap1l4 (MGP_PahariEiJ_G0013937)	Phlda2 (MGP_PahariEiJ_G0013936)	Slc22a18 (MGP_PahariEiJ_G0013935)	Cdkn1c (MGP_PahariEiJ_G0013934)	Kcnq1 (MGP_PahariEiJ_G0013933)	Tssc4 (MGP_PahariEiJ_G0013932)	Trpm5 (MGP_PahariEiJ_G0013931)	Cd81 (MGP_PahariEiJ_G0013930)	Tspan32 (MGP_PahariEiJ_G0013929)
Rat	MODERN SPECIES		Mrgprf (ENSRNOG00000013426)	Tpcn2 (ENSRNOG00000013387) #23	Ccnd1 (ENSRNOG00000020918) #24	Lto1 (ENSRNOG00000020903)	Fgf19 (ENSRNOG00000020899) #26	Fgf4 (ENSRNOG00000020890) #27	Fgf3 (ENSRNOG00000020888) #28	Ano1 (ENSRNOG00000020865) #30	Fadd (ENSRNOG00000047035) #31	ENSRNOG00000029588	Ppfia1 (ENSRNOG00000020857)	Cttn (ENSRNOG00000050994)	Shank2 (ENSRNOG00000050206)	LOC102552318 (ENSRNOG00000059303)	Dhcr7 (ENSRNOG00000020776) #21	Nadsyn1 (ENSRNOG00000020736) #22	Mrgpre (ENSRNOG00000065330)	Mrgprg (ENSRNOG00000069807)	RGD1562011 (ENSRNOG00000061525)	Osbpl5 (ENSRNOG00000020713)	Tnfrsf22 (ENSRNOG00000070689)	Tnfrsf26 (ENSRNOG00000043486)	Cars1 (ENSRNOG00000020651)	Nap1l4 (ENSRNOG00000020615)	Phlda2 (ENSRNOG00000020614)	Slc22a18 (ENSRNOG00000020562)	Cdkn1c (ENSRNOG00000059500)	Kcnq1 (ENSRNOG00000020532)	Trpm5 (ENSRNOG00000020484)	Cd81 (ENSRNOG00000020451)	Tssc4 (ENSRNOG00000032677)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1123															ENSNGAG00000012293	Nadsyn1 (ENSNGAG00000000715) #22	Incenp (ENSNGAG00000007725)	ENSNGAG00000020202	ENSNGAG00000015940
Lesser Egyptian jerboa	MODERN SPECIES	53			ENSJJAG00000023706	Ccnd1 (ENSJJAG00000023518) #24	LTO1 (ENSJJAG00000022000)	Fgf15 (ENSJJAG00000015750) #26	Fgf4 (ENSJJAG00000012092) #27	Fgf3 (ENSJJAG00000021121) #28	Ano1 (ENSJJAG00000021888) #30	Fadd (ENSJJAG00000015124) #31	Ppfia1 (ENSJJAG00000024383)	Cttn (ENSJJAG00000013444)	Shank2 (ENSJJAG00000015229)	Acte1 (ENSJJAG00000000416)	Dhcr7 (ENSJJAG00000017191) #21	Nadsyn1 (ENSJJAG00000012419) #22	Osbpl5 (ENSJJAG00000020113)	Cars (ENSJJAG00000022992)	Nap1l4 (ENSJJAG00000001786)	Phlda2 (ENSJJAG00000020453)	Slc22a18 (ENSJJAG00000013550)	Cdkn1c (ENSJJAG00000024035)	Kcnq1 (ENSJJAG00000023652)	Trpm5 (ENSJJAG00000012753)	ENSJJAG00000004201	Tspan32 (ENSJJAG00000018126)	ENSJJAG00000018834	Ascl2 (ENSJJAG00000002243)	Th (ENSJJAG00000012231)	ENSJJAG00000012396	Igf2 (ENSJJAG00000014388)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Sciuridae	ANCESTRAL SPECIES	22	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Marmotini	ANCESTRAL SPECIES	6	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Alpin marmot	MODERN SPECIES	86	MRGPRD (ENSMMMG00000001512)	MRGPRF (ENSMMMG00000001519)	TPCN2 (ENSMMMG00000001627) #23	ENSMMMG00000003260 #24	ENSMMMG00000003262 #24	LTO1 (ENSMMMG00000003272)	FGF19 (ENSMMMG00000003282) #26	FGF4 (ENSMMMG00000003298) #27	FGF3 (ENSMMMG00000003325) #28	ANO1 (ENSMMMG00000003366) #30	FADD (ENSMMMG00000003409) #31	PPFIA1 (ENSMMMG00000003424)	CTTN (ENSMMMG00000003602)	SHANK2 (ENSMMMG00000003690)	DHCR7 (ENSMMMG00000004168) #21	NADSYN1 (ENSMMMG00000004190) #22	MRGPRG (ENSMMMG00000004231)	OSBPL5 (ENSMMMG00000004241)	CARS1 (ENSMMMG00000004312)	NAP1L4 (ENSMMMG00000004457)	PHLDA2 (ENSMMMG00000004541)	SLC22A18 (ENSMMMG00000004552)	KCNQ1 (ENSMMMG00000004570)	TRPM5 (ENSMMMG00000004649)	ENSMMMG00000004686	CD81 (ENSMMMG00000004698)	TSPAN32 (ENSMMMG00000004716)	ASCL2 (ENSMMMG00000004832)	ENSMMMG00000004835	ENSMMMG00000004847	INS (ENSMMMG00000004855)
Marmotini_b	ANCESTRAL SPECIES	209															ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Arctic ground squirrel	MODERN SPECIES	490														ENSUPAG00010021692	DHCR7 (ENSUPAG00010021683) #21	NADSYN1 (ENSUPAG00010021674) #22	MRGPRE (ENSUPAG00010021672)	MRGPRG (ENSUPAG00010021671)	OSBPL5 (ENSUPAG00010021654)	CARS1 (ENSUPAG00010021631)	NAP1L4 (ENSUPAG00010021588)	PHLDA2 (ENSUPAG00010021584)	SLC22A18 (ENSUPAG00010021583)	ENSUPAG00010021580	KCNQ1 (ENSUPAG00010021544)	TRPM5 (ENSUPAG00010021528)	TSSC4 (ENSUPAG00010021525)	CD81 (ENSUPAG00010021522)	TSPAN32 (ENSUPAG00010021427)	ASCL2 (ENSUPAG00010021416)	TH (ENSUPAG00010021400)
Squirrel	MODERN SPECIES	394															ENSSTOG00000029451	NADSYN1 (ENSSTOG00000001522) #22	MRGPRE (ENSSTOG00000021328)	OSBPL5 (ENSSTOG00000024630)	CARS1 (ENSSTOG00000010545)	NAP1L4 (ENSSTOG00000014135)	SLC22A18 (ENSSTOG00000022973)	ENSSTOG00000034490	KCNQ1 (ENSSTOG00000027060)	TRPM5 (ENSSTOG00000021454)	CD81 (ENSSTOG00000000251)	TSPAN32 (ENSSTOG00000022426)	ASCL2 (ENSSTOG00000028167)	TH (ENSSTOG00000026422)
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005023121	CCND1 (ENSSVLG00005023090) #24	LTO1 (ENSSVLG00005023000)	FGF19 (ENSSVLG00005022961) #26	FGF4 (ENSSVLG00005022938) #27	FGF3 (ENSSVLG00005022895) #28	ANO1 (ENSSVLG00005021586) #30	ENSSVLG00005021335 #31	ENSSVLG00005021293	PPFIA1 (ENSSVLG00005020857)	CTTN (ENSSVLG00005020806)	ENSSVLG00005020779	SHANK2 (ENSSVLG00005020334)	ENSSVLG00005020240	DHCR7 (ENSSVLG00005020210) #21	NADSYN1 (ENSSVLG00005020150) #22	MRGPRE (ENSSVLG00005020125)	MRGPRG (ENSSVLG00005020102)	OSBPL5 (ENSSVLG00005019976)	CARS1 (ENSSVLG00005019869)	NAP1L4 (ENSSVLG00005019775)	PHLDA2 (ENSSVLG00005019643)	SLC22A18 (ENSSVLG00005019588)	ENSSVLG00005019445	KCNQ1 (ENSSVLG00005019353)	TRPM5 (ENSSVLG00005018706)	TSSC4 (ENSSVLG00005018667)	CD81 (ENSSVLG00005018575)	TSPAN32 (ENSSVLG00005018471)	ASCL2 (ENSSVLG00005018445)	TH (ENSSVLG00005018203)
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Guinea pig	MODERN SPECIES	42	MRGPRD (ENSCPOG00000025266)	MRGPRF (ENSCPOG00000033803)	TPCN2 (ENSCPOG00000002580) #23	CCND1 (ENSCPOG00000032886) #24	LTO1 (ENSCPOG00000031028)	FGF19 (ENSCPOG00000008147) #26	FGF4 (ENSCPOG00000013920) #27	FGF3 (ENSCPOG00000007355) #28	ANO1 (ENSCPOG00000011005) #30	FADD (ENSCPOG00000011290) #31	PPFIA1 (ENSCPOG00000005552)	CTTN (ENSCPOG00000005562)	SHANK2 (ENSCPOG00000009737)	ENSCPOG00000022995	DHCR7 (ENSCPOG00000011633) #21	NADSYN1 (ENSCPOG00000015147) #22	MRGPRE (ENSCPOG00000004420)	ENSCPOG00000002584	OSBPL5 (ENSCPOG00000015032)	CARS1 (ENSCPOG00000005087)	NAP1L4 (ENSCPOG00000026000)	PHLDA2 (ENSCPOG00000007595)	SLC22A18 (ENSCPOG00000023438)	KCNQ1 (ENSCPOG00000004952)	TRPM5 (ENSCPOG00000010253)	ENSCPOG00000037561	CD81 (ENSCPOG00000010241)	TSPAN32 (ENSCPOG00000020601)	ASCL2 (ENSCPOG00000035275)	ENSCPOG00000038059	TH (ENSCPOG00000012591)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT01030000234639.A.b.a.b.b	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a	ENSGT00390000015440
Degu	MODERN SPECIES	59	TPCN2 (ENSODEG00000017370) #23	CCND1 (ENSODEG00000017314) #24	LTO1 (ENSODEG00000017276)	FGF19 (ENSODEG00000017850) #26	FGF4 (ENSODEG00000017332) #27	FGF3 (ENSODEG00000017350) #28	ENSODEG00000017320 #30	ENSODEG00000017541 #30	ENSODEG00000020446	PPFIA1 (ENSODEG00000017203)	CTTN (ENSODEG00000017283)	SHANK2 (ENSODEG00000018120)	ENSODEG00000017405	ENSODEG00000020450	DHCR7 (ENSODEG00000017100) #21	ENSODEG00000017514 #22	OSBPL5 (ENSODEG00000017355)	ENSODEG00000017356	ENSODEG00000020407	ENSODEG00000017343	CARS1 (ENSODEG00000017246)	ENSODEG00000017160	ENSODEG00000017602	SLC22A18 (ENSODEG00000017345)	CDKN1C (ENSODEG00000017263)	ENSODEG00000020462	KCNQ1 (ENSODEG00000017184)	TRPM5 (ENSODEG00000017210)	ENSODEG00000017309	TSPAN32 (ENSODEG00000017230)	ASCL2 (ENSODEG00000017151)
Long-tailed chinchilla	MODERN SPECIES	129	MRGPRD (ENSCLAG00000016417)	MRGPRF (ENSCLAG00000016323)	TPCN2 (ENSCLAG00000016178) #23	CCND1 (ENSCLAG00000014981) #24	LTO1 (ENSCLAG00000014111)	FGF19 (ENSCLAG00000015041) #26	ENSCLAG00000014848 #27	FGF3 (ENSCLAG00000015995) #28	ANO1 (ENSCLAG00000015936) #30	FADD (ENSCLAG00000015722) #31	PPFIA1 (ENSCLAG00000015977)	CTTN (ENSCLAG00000016832)	SHANK2 (ENSCLAG00000017262)	ENSCLAG00000016369	DHCR7 (ENSCLAG00000015513) #21	NADSYN1 (ENSCLAG00000016090) #22	OSBPL5 (ENSCLAG00000015702)	ENSCLAG00000016141	ENSCLAG00000015017 #27	CARS1 (ENSCLAG00000015379)	NAP1L4 (ENSCLAG00000015463)	PHLDA2 (ENSCLAG00000013737)	SLC22A18 (ENSCLAG00000015366)	KCNQ1 (ENSCLAG00000016386)	TRPM5 (ENSCLAG00000015080)	TSSC4 (ENSCLAG00000015219)	CD81 (ENSCLAG00000015223)	TSPAN32 (ENSCLAG00000016450)	ASCL2 (ENSCLAG00000016372)	TH (ENSCLAG00000015576)	INS (ENSCLAG00000015849)
Naked mole-rat female	MODERN SPECIES	14	TPCN2 (ENSHGLG00000009786) #23	SMIM38 (ENSHGLG00000042963)	CCND1 (ENSHGLG00000039478) #24	ORAOV1 (ENSHGLG00000041285)	FGF19 (ENSHGLG00000049791) #26	FGF4 (ENSHGLG00000008219) #27	FGF3 (ENSHGLG00000006943) #28	ANO1 (ENSHGLG00000018162) #30	FADD (ENSHGLG00000038686) #31	PPFIA1 (ENSHGLG00000013241)	CTTN (ENSHGLG00000011727)	SHANK2 (ENSHGLG00000012313)	ENSHGLG00000046722	ENSHGLG00000013700	DHCR7 (ENSHGLG00000012353) #21	NADSYN1 (ENSHGLG00000010490) #22	ENSHGLG00000042806	OSBPL5 (ENSHGLG00000009680)	ENSHGLG00000036263	CARS (ENSHGLG00000010898)	NAP1L4 (ENSHGLG00000008836)	PHLDA2 (ENSHGLG00000035203)	SLC22A18 (ENSHGLG00000011443)	ENSHGLG00000032945	KCNQ1 (ENSHGLG00000016045)	ENSHGLG00000041039	TRPM5 (ENSHGLG00000014492)	TSSC4 (ENSHGLG00000014018)	CD81 (ENSHGLG00000013387)	ENSHGLG00000047991	TSPAN32 (ENSHGLG00000006428)
Tree shrew	MODERN SPECIES	3897															DHCR7 (ENSTBEG00000013059) #21	NADSYN1 (ENSTBEG00000013118) #22
Primates	ANCESTRAL SPECIES		ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000161499	ENSGT00940000162878	ENSGT00940000154853.c	ENSGT00940000154853.d	ENSGT00940000158566	ENSGT00940000157482.d	ENSGT00600000084617	ENSGT00410000025985	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00390000006255.b.b	ENSGT00390000006979.a	ENSGT00940000159375	ENSGT00940000161450
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000161499	ENSGT00940000162878	ENSGT00940000154853.c	ENSGT00940000154853.d	ENSGT00940000158566	ENSGT00940000157482.d	ENSGT00600000084617	ENSGT00410000025985	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00390000006255.b.b	ENSGT00390000006979.a	ENSGT00940000161450	ENSGT00940000159375
Coquerels sifaka	MODERN SPECIES	124	MRPL21 (ENSPCOG00000015404)	IGHMBP2 (ENSPCOG00000018759)	MRGPRF (ENSPCOG00000010107)	TPCN2 (ENSPCOG00000017980) #23	CCND1 (ENSPCOG00000027474) #24	LTO1 (ENSPCOG00000027650)	FGF19 (ENSPCOG00000020362) #26	FGF4 (ENSPCOG00000028304) #27	FGF3 (ENSPCOG00000025992) #28	ANO1 (ENSPCOG00000026720) #30	FADD (ENSPCOG00000022951) #31	PPFIA1 (ENSPCOG00000028686)	CTTN (ENSPCOG00000010752)	SHANK2 (ENSPCOG00000017133)	DHCR7 (ENSPCOG00000020649) #21	NADSYN1 (ENSPCOG00000020772) #22	LGALS12 (ENSPCOG00000027553)	PLAAT4 (ENSPCOG00000026183)	PLAAT2 (ENSPCOG00000022949)	PLAAT3 (ENSPCOG00000006605)	ATL3 (ENSPCOG00000024845)	ENSPCOG00000016694	RTN3 (ENSPCOG00000004638)	ZFTA (ENSPCOG00000014744)	SPINDOC (ENSPCOG00000028492)	MARK2 (ENSPCOG00000015081)	RCOR2 (ENSPCOG00000020568)	NAA40 (ENSPCOG00000020757)	COX8A (ENSPCOG00000025872)	OTUB1 (ENSPCOG00000016768)	FLRT1 (ENSPCOG00000013563)
Greater bamboo lemur	MODERN SPECIES	300					CCND1 (ENSPSMG00000010693) #24	LTO1 (ENSPSMG00000010717)	FGF19 (ENSPSMG00000010730) #26	FGF4 (ENSPSMG00000010738) #27	FGF3 (ENSPSMG00000010747) #28	ANO1 (ENSPSMG00000010865) #30	FADD (ENSPSMG00000010924) #31	PPFIA1 (ENSPSMG00000011104)	ENSPSMG00000011253	SHANK2 (ENSPSMG00000011450)	DHCR7 (ENSPSMG00000011650) #21	NADSYN1 (ENSPSMG00000011720) #22	LGALS12 (ENSPSMG00000011815)
Mouse lemur	MODERN SPECIES	27	IGHMBP2 (ENSMICG00000043944)	MRGPRF (ENSMICG00000017866)	TPCN2 (ENSMICG00000017867) #23	CCND1 (ENSMICG00000033113) #24	LTO1 (ENSMICG00000003061)	FGF19 (ENSMICG00000047906) #26	FGF4 (ENSMICG00000046252) #27	FGF3 (ENSMICG00000045024) #28	ANO1 (ENSMICG00000017568) #30	FADD (ENSMICG00000047386) #31	ENSMICG00000003755	CTTN (ENSMICG00000003767)	ENSMICG00000044974	SHANK2 (ENSMICG00000035602)	DHCR7 (ENSMICG00000017094) #21	NADSYN1 (ENSMICG00000017100) #22	LGALS12 (ENSMICG00000010263)	TSPAN32 (ENSMICG00000045977)	ENSMICG00000034071	ENSMICG00000044072	ENSMICG00000032218	ENSMICG00000043027	ENSMICG00000044564	ENSMICG00000044796	ENSMICG00000033487	ENSMICG00000008357	PTPRJ (ENSMICG00000005145)	ENSMICG00000036331	ENSMICG00000032012	ENSMICG00000003903	ENSMICG00000008279
Bushbaby	MODERN SPECIES	255													ENSOGAG00000033531	ENSOGAG00000034934	DHCR7 (ENSOGAG00000001242) #21	NADSYN1 (ENSOGAG00000001243) #22	PLAAT4 (ENSOGAG00000005197)	PLAAT3 (ENSOGAG00000027691)	ATL3 (ENSOGAG00000003756)	RTN3 (ENSOGAG00000003760)	ZFTA (ENSOGAG00000030093)	SPINDOC (ENSOGAG00000005020)	MARK2 (ENSOGAG00000007105)	RCOR2 (ENSOGAG00000007109)	NAA40 (ENSOGAG00000013369)	COX8A (ENSOGAG00000007112)	OTUB1 (ENSOGAG00000007114)	MACROD1 (ENSOGAG00000027152)	FLRT1 (ENSOGAG00000007115)	STIP1 (ENSOGAG00000007117)	FERMT3 (ENSOGAG00000007125)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Simiiformes	ANCESTRAL SPECIES		ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT01030000240235	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000157816 #24	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00400000022774	ENSGT00940000157816 #24	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846
Hominidae	ANCESTRAL SPECIES	1	ENSGT00400000022774	ENSGT00940000157816 #24	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #24	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT00390000004140.b	ENSGT00390000013075.a	ENSGT00390000004026	ENSGT00950000183078.b.a.a	ENSGT00940000161220	ENSGT00510000047925	ENSGT00390000016789	ENSGT00390000000938.q	ENSGT00950000183144.A.i.a.a.a.a.c	ENSGT00950000183144.A.i.a.a.a.a.d	ENSGT00950000183144.A.i.a.b	ENSGT00950000183144.A.i.a.a.a.b	ENSGT00940000156576	ENSGT00940000161147
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT01070000254034	ENSGT00400000022774	ENSGT00940000157816 #24	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT00940000160995.b.e.a	ENSGT00390000001538.b	ENSGT00390000004140.b	ENSGT00390000013075.a	ENSGT00390000004026	ENSGT00950000183078.b.a.a	ENSGT00510000047925	ENSGT00390000016789	ENSGT00940000161220	ENSGT00390000000938.q	ENSGT00950000183144.A.i.a.a.a.a.c	ENSGT00950000183144.A.i.a.a.a.a.d	ENSGT00950000183144.A.i.a.b	ENSGT00950000183144.A.i.a.a.a.b
Pan	ANCESTRAL SPECIES	1	ENSGT00950000182857.a.a.b.a.r.a.a.a.a.a.a	ENSGT00910000148731	ENSGT00940000157816 #24	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00910000147131	ENSGT00910000144208.g.a	ENSGT00940000163626.f.b	ENSGT00390000009472.b.b	ENSGT00940000160995.b.e.a	ENSGT00390000001538.b	ENSGT00390000004140.b	ENSGT00390000013075.a	ENSGT00390000004026	ENSGT00950000183078.b.a.a	ENSGT00390000016789	ENSGT00940000161220	ENSGT00390000000938.q	ENSGT00950000183144.A.i.a.a.a.a.c	ENSGT00950000183144.A.i.a.a.a.a.d
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000003997	ENSPTRG00000049321	FGF19 (ENSPTRG00000003998) #26	ENSPTRG00000052479	FGF4 (ENSPTRG00000004000) #27	FGF3 (ENSPTRG00000004001) #28	ANO1 (ENSPTRG00000052288) #30	FADD (ENSPTRG00000004004) #31	PPFIA1 (ENSPTRG00000004005)	ENSPTRG00000051160	ENSPTRG00000049553	ENSPTRG00000048213	ENSPTRG00000046187	SHANK2 (ENSPTRG00000004007)	DHCR7 (ENSPTRG00000004013) #21	NADSYN1 (ENSPTRG00000004014) #22	ENSPTRG00000028495	ENSPTRG00000049363	KRTAP5-9 (ENSPTRG00000028493)	KRTAP5-11 (ENSPTRG00000028491)	ENSPTRG00000047907	ENSPTRG00000044703	ENSPTRG00000007738	ENSPTRG00000049924	ENSPTRG00000050141	ENSPTRG00000028485	DEFB130 (ENSPTRG00000032474)	DEFB131B (ENSPTRG00000050172)	XNDC1N (ENSPTRG00000023860)	RNF121 (ENSPTRG00000004021)	IL18BP (ENSPTRG00000004022)
Bonobo	MODERN SPECIES	2	ENSPPAG00000033657	ENSPPAG00000014303	ENSPPAG00000036375 #24	ENSPPAG00000035520	ENSPPAG00000041380	FGF19 (ENSPPAG00000025447) #26	ENSPPAG00000033224	FGF3 (ENSPPAG00000041885) #28	ANO1 (ENSPPAG00000018068) #30	ENSPPAG00000034750 #31	PPFIA1 (ENSPPAG00000042805)	ENSPPAG00000036436	CTTN (ENSPPAG00000041298)	SHANK2 (ENSPPAG00000040027)	DHCR7 (ENSPPAG00000038909) #21	NADSYN1 (ENSPPAG00000001380) #22	ENSPPAG00000044001	ENSPPAG00000029134	ENSPPAG00000035835	ENSPPAG00000040916	ENSPPAG00000012937	RNF121 (ENSPPAG00000033091)	IL18BP (ENSPPAG00000037702)	NUMA1 (ENSPPAG00000030445)	LAMTOR1 (ENSPPAG00000040943)	TOMT (ENSPPAG00000031661)	ENSPPAG00000018102	FOLR3 (ENSPPAG00000044084)	ENSPPAG00000044083	FOLR1 (ENSPPAG00000030512)	FOLR2 (ENSPPAG00000034921)
Human	MODERN SPECIES	2	MRGPRF (ENSG00000172935)	TPCN2 (ENSG00000162341) #23	SMIM38 (ENSG00000284713)	MYEOV (ENSG00000172927)	CCND1 (ENSG00000110092) #24	LTO1 (ENSG00000149716)	FGF19 (ENSG00000162344) #26	FGF4 (ENSG00000075388) #27	FGF3 (ENSG00000186895) #28	ANO1 (ENSG00000131620) #30	FADD (ENSG00000168040) #31	PPFIA1 (ENSG00000131626)	CTTN (ENSG00000085733)	SHANK2 (ENSG00000162105)	DHCR7 (ENSG00000172893) #21	NADSYN1 (ENSG00000172890) #22	KRTAP5-7 (ENSG00000244411)	KRTAP5-8 (ENSG00000241233)	KRTAP5-9 (ENSG00000254997)	KRTAP5-10 (ENSG00000204572)	KRTAP5-11 (ENSG00000204571)	DEFB108B (ENSG00000184276)	XNDC1N (ENSG00000254469)	DEFB131B (ENSG00000225805)	RNF121 (ENSG00000137522)	IL18BP (ENSG00000137496)	NUMA1 (ENSG00000137497)	LRTOMT (ENSG00000284922)	LRRC51 (ENSG00000184154)	LAMTOR1 (ENSG00000149357)	TOMT (ENSG00000284844)
Gorilla	MODERN SPECIES	2	MYEOV (ENSGGOG00000014636)	ENSGGOG00000003377	ENSGGOG00000037803 #24	ENSGGOG00000002858	ENSGGOG00000039153	FGF19 (ENSGGOG00000024713) #26	ENSGGOG00000040661	FGF4 (ENSGGOG00000010088) #27	FGF3 (ENSGGOG00000008854) #28	ANO1 (ENSGGOG00000013637) #30	FADD (ENSGGOG00000003989) #31	PPFIA1 (ENSGGOG00000013266)	ENSGGOG00000003011	SHANK2 (ENSGGOG00000003019)	DHCR7 (ENSGGOG00000006547) #21	NADSYN1 (ENSGGOG00000006551) #22	ENSGGOG00000038292	KRTAP5-10 (ENSGGOG00000016395)	ENSGGOG00000036265	DEFB108B (ENSGGOG00000028100)	DEFB130A (ENSGGOG00000003692)	ENSGGOG00000027132	RNF121 (ENSGGOG00000016954)	IL18BP (ENSGGOG00000016963)	NUMA1 (ENSGGOG00000016968)	TOMT (ENSGGOG00000012492)	LAMTOR1 (ENSGGOG00000012495)	ENSGGOG00000012501	FOLR3 (ENSGGOG00000003944)	ENSGGOG00000038422	FOLR1 (ENSGGOG00000005569)
Orangutan	MODERN SPECIES	2	ENSPPYG00000018627	ENSPPYG00000039142	CCND1 (ENSPPYG00000002961) #24	LTO1 (ENSPPYG00000030489)	FGF19 (ENSPPYG00000002960) #26	ENSPPYG00000033162	FGF4 (ENSPPYG00000002958) #27	FGF3 (ENSPPYG00000002957) #28	ANO1 (ENSPPYG00000002956) #30	FADD (ENSPPYG00000002955) #31	PPFIA1 (ENSPPYG00000025904)	CTTN (ENSPPYG00000002954)	SHANK2 (ENSPPYG00000002953)	ENSPPYG00000036563	DHCR7 (ENSPPYG00000033723) #21	NADSYN1 (ENSPPYG00000002948) #22	ZNF195 (ENSPPYG00000002946)	MRGPRE (ENSPPYG00000002945)	MRGPRG (ENSPPYG00000002943)	OSBPL5 (ENSPPYG00000002942)	CARS1 (ENSPPYG00000002940)	NAP1L4 (ENSPPYG00000002938)	PHLDA2 (ENSPPYG00000002937)	SLC22A18 (ENSPPYG00000002936)	ENSPPYG00000002935	ENSPPYG00000002934	ENSPPYG00000002933	KCNQ1 (ENSPPYG00000002932)	TRPM5 (ENSPPYG00000002931)	ENSPPYG00000002930	CD81 (ENSPPYG00000002929)
Gibbon	MODERN SPECIES	19	TPCN2 (ENSNLEG00000006614) #23	ENSNLEG00000027800	CCND1 (ENSNLEG00000029930) #24	ENSNLEG00000010437	FGF19 (ENSNLEG00000010441) #26	ENSNLEG00000033620	ENSNLEG00000010450 #28	ANO1 (ENSNLEG00000010451) #30	FADD (ENSNLEG00000010467) #31	ENSNLEG00000031707	PPFIA1 (ENSNLEG00000010473)	ENSNLEG00000010556	ENSNLEG00000010602	ENSNLEG00000034483	DHCR7 (ENSNLEG00000032731) #21	NADSYN1 (ENSNLEG00000010685) #22	KRTAP5-7 (ENSNLEG00000010786)	ENSNLEG00000028330	ENSNLEG00000013291	ENSNLEG00000031546	ENSNLEG00000032416	ENSNLEG00000028347	ZNF195 (ENSNLEG00000010804)	MRGPRE (ENSNLEG00000019178)	MRGPRG (ENSNLEG00000010811)	ENSNLEG00000010812	NAP1L4 (ENSNLEG00000010841)	ENSNLEG00000019179	ENSNLEG00000010937	SLC22A18 (ENSNLEG00000010944)	ENSNLEG00000010948
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000157816 #24	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT00940000154251.A.b.a.b.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00940000161001	ENSGT00940000160588
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00960000186788	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT00940000154251.A.b.a.b.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00950000183210.d.b	ENSGT00940000161001
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00400000022774	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00960000186788	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT00940000154251.A.b.a.b.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00950000183210.d.b	ENSGT00940000161001	ENSGT00940000160588
Olive baboon	MODERN SPECIES	3	SMIM38 (ENSPANG00000032349)	CCND1 (ENSPANG00000043007) #24	ENSPANG00000008596	FGF19 (ENSPANG00000042087) #26	FGF4 (ENSPANG00000019451) #27	FGF3 (ENSPANG00000023335) #28	ENSPANG00000038148	ENSPANG00000042473	ANO1 (ENSPANG00000003976) #30	FADD (ENSPANG00000023465) #31	PPFIA1 (ENSPANG00000015386)	CTTN (ENSPANG00000013112)	SHANK2 (ENSPANG00000018812)	ENSPANG00000044958	DHCR7 (ENSPANG00000013062) #21	NADSYN1 (ENSPANG00000011530) #22	KRTAP5-9 (ENSPANG00000031335)	ENSPANG00000045732	MRGPRE (ENSPANG00000037492)	MRGPRG (ENSPANG00000037617)	OSBPL5 (ENSPANG00000007472)	ENSPANG00000042600	CARS1 (ENSPANG00000015564)	NAP1L4 (ENSPANG00000008348)	PHLDA2 (ENSPANG00000031929)	SLC22A18 (ENSPANG00000023336)	ENSPANG00000041515	KCNQ1 (ENSPANG00000006760)	ENSPANG00000037475	TRPM5 (ENSPANG00000007388)	TSSC4 (ENSPANG00000042853)
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00400000022774	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00960000186788	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00990000205266	ENSGT00940000154251.A.b.a.b.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b.h	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00620000089395	ENSGT00950000183210.d.b	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846
Drill	MODERN SPECIES	974															DHCR7 (ENSMLEG00000028930) #21	NADSYN1 (ENSMLEG00000044446) #22	ENSMLEG00000025930	MRGPRE (ENSMLEG00000017996)	MRGPRG (ENSMLEG00000033732)	OSBPL5 (ENSMLEG00000036003)	CARS1 (ENSMLEG00000029795)	NAP1L4 (ENSMLEG00000028298)	SLC22A18 (ENSMLEG00000029562)	ENSMLEG00000036241	ENSMLEG00000036537	KCNQ1 (ENSMLEG00000043991)	ENSMLEG00000007496	TRPM5 (ENSMLEG00000030155)	TSSC4 (ENSMLEG00000040755)	CD81 (ENSMLEG00000037580)	TSPAN32 (ENSMLEG00000039192)
Sooty mangabey	MODERN SPECIES	518	TPCN2 (ENSCATG00000041149) #23	MYEOV (ENSCATG00000034953)	CCND1 (ENSCATG00000040258) #24	LTO1 (ENSCATG00000039172)	FGF19 (ENSCATG00000038630) #26	ENSCATG00000032815	FGF4 (ENSCATG00000034644) #27	FGF3 (ENSCATG00000023721) #28	ANO1 (ENSCATG00000029714) #30	FADD (ENSCATG00000035655) #31	PPFIA1 (ENSCATG00000035769)	CTTN (ENSCATG00000038054)	ENSCATG00000041207	SHANK2 (ENSCATG00000038261)	DHCR7 (ENSCATG00000031848) #21	NADSYN1 (ENSCATG00000030630) #22	KRTAP5-7 (ENSCATG00000042729)	ENSCATG00000042575	ZNF195 (ENSCATG00000031492)	OSBPL5 (ENSCATG00000014690)	CARS1 (ENSCATG00000035979)	NAP1L4 (ENSCATG00000035520)	SLC22A18 (ENSCATG00000006581)	ENSCATG00000041796	CDKN1C (ENSCATG00000030398)	ENSCATG00000042752	ENSCATG00000032596	KCNQ1 (ENSCATG00000037006)	TRPM5 (ENSCATG00000031262)	ENSCATG00000038899	CD81 (ENSCATG00000039786)
Macaca	ANCESTRAL SPECIES	2	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00960000186788	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000164776.b	ENSGT01060000250173	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677.d	ENSGT00620000089395	ENSGT00940000161001	ENSGT00950000183210.d.b	ENSGT00940000160588	ENSGT00390000011846
Pig-tailed macaque	MODERN SPECIES	433	TPCN2 (ENSMNEG00000043437) #23	MYEOV (ENSMNEG00000040855)	CCND1 (ENSMNEG00000040753) #24	LTO1 (ENSMNEG00000042591)	FGF19 (ENSMNEG00000035985) #26	ENSMNEG00000044891	FGF4 (ENSMNEG00000042206) #27	FGF3 (ENSMNEG00000044971) #28	ANO1 (ENSMNEG00000004507) #30	FADD (ENSMNEG00000038046) #31	PPFIA1 (ENSMNEG00000031136)	CTTN (ENSMNEG00000037757)	SHANK2 (ENSMNEG00000031408)	ENSMNEG00000032531	DHCR7 (ENSMNEG00000043442) #21	NADSYN1 (ENSMNEG00000032850) #22	ENSMNEG00000028295	ENSMNEG00000031331	KRTAP5-10 (ENSMNEG00000034949)	ENSMNEG00000037654	OSBPL5 (ENSMNEG00000043826)	CARS1 (ENSMNEG00000034229)	NAP1L4 (ENSMNEG00000039481)	SLC22A18 (ENSMNEG00000037203)	ENSMNEG00000016035	ENSMNEG00000030432	ENSMNEG00000036178	KCNQ1 (ENSMNEG00000043384)	ENSMNEG00000045079	TRPM5 (ENSMNEG00000031765)	TSSC4 (ENSMNEG00000039665)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.b.a.a.b	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT01100000263493.a.b.b.a.a.b.b.a.b.b.b.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677.d	ENSGT00620000089395	ENSGT00940000161001	ENSGT00950000183210.d.b	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a
Crab-eating macaque	MODERN SPECIES	5	LTO1 (ENSMFAG00000063304)	FGF19 (ENSMFAG00000043051) #26	FGF4 (ENSMFAG00000052634) #27	FGF3 (ENSMFAG00000036070) #28	ANO1 (ENSMFAG00000000653) #30	FADD (ENSMFAG00000041718) #31	PPFIA1 (ENSMFAG00000032570)	CTTN (ENSMFAG00000022887)	ENSMFAG00000060197	SHANK2 (ENSMFAG00000031467)	ENSMFAG00000007500	ENSMFAG00000058717	ENSMFAG00000062361	ENSMFAG00000052327	DHCR7 (ENSMFAG00000003021) #21	NADSYN1 (ENSMFAG00000040085) #22	ENSMFAG00000056697	ENSMFAG00000032492	MRGPRE (ENSMFAG00000056396)	ENSMFAG00000055808	OSBPL5 (ENSMFAG00000033431)	CARS1 (ENSMFAG00000000778)	ENSMFAG00000051808	NAP1L4 (ENSMFAG00000002601)	PHLDA2 (ENSMFAG00000040835)	SLC22A18 (ENSMFAG00000038599)	CDKN1C (ENSMFAG00000037524)	ENSMFAG00000037563	ENSMFAG00000000298	KCNQ1 (ENSMFAG00000044043)	TRPM5 (ENSMFAG00000042635)
Rhesus	MODERN SPECIES	5	FGF19 (ENSMMUG00000053386) #26	FGF4 (ENSMMUG00000057940) #27	FGF3 (ENSMMUG00000051149) #28	ENSMMUG00000056834	ANO1 (ENSMMUG00000019734) #30	FADD (ENSMMUG00000054645) #31	PPFIA1 (ENSMMUG00000013265)	CTTN (ENSMMUG00000013267)	ENSMMUG00000052168	ENSMMUG00000061775	ENSMMUG00000064128	SHANK2 (ENSMMUG00000019736)	ACTE1 (ENSMMUG00000005019)	DHCR7 (ENSMMUG00000011976) #21	ZNF195 (ENSMMUG00000018698)	NADSYN1 (ENSMMUG00000011977) #22	MRGPRG (ENSMMUG00000051131)	ENSMMUG00000059138	OSBPL5 (ENSMMUG00000000513)	CARS1 (ENSMMUG00000000511)	NAP1L4 (ENSMMUG00000007753)	PHLDA2 (ENSMMUG00000007752)	SLC22A18 (ENSMMUG00000007751)	CDKN1C (ENSMMUG00000037980)	ENSMMUG00000049690	ENSMMUG00000039514	KCNQ1 (ENSMMUG00000007742)	TRPM5 (ENSMMUG00000004773)	TSSC4 (ENSMMUG00000013772)	CD81 (ENSMMUG00000002043)	TSPAN32 (ENSMMUG00000001324)
Vervet Monkey	MODERN SPECIES		MRGPRD (ENSCSAG00000009230)	MRGPRF (ENSCSAG00000009245)	TPCN2 (ENSCSAG00000009261) #23	CCND1 (ENSCSAG00000009273) #24	LTO1 (ENSCSAG00000009279)	ENSCSAG00000018961	FGF19 (ENSCSAG00000009286) #26	FGF4 (ENSCSAG00000009298) #27	FGF3 (ENSCSAG00000009310) #28	ANO1 (ENSCSAG00000009324) #30	ENSCSAG00000009328	PPFIA1 (ENSCSAG00000009343)	CTTN (ENSCSAG00000009367)	SHANK2 (ENSCSAG00000009403)	DHCR7 (ENSCSAG00000009420) #21	NADSYN1 (ENSCSAG00000009433) #22	ENSCSAG00000009446	ENSCSAG00000009479	ENSCSAG00000009521	MRGPRE (ENSCSAG00000018960)	MRGPRG (ENSCSAG00000018959)	OSBPL5 (ENSCSAG00000009536)	CARS1 (ENSCSAG00000009547)	ENSCSAG00000018958	NAP1L4 (ENSCSAG00000009554)	PHLDA2 (ENSCSAG00000018957)	SLC22A18 (ENSCSAG00000009558)	CDKN1C (ENSCSAG00000009560)	KCNQ1 (ENSCSAG00000009565)	TRPM5 (ENSCSAG00000009682)	TSSC4 (ENSCSAG00000009719)
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00910000147590	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00900000140979.a.a.`b.a.o.b.b	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b	ENSGT00390000017913.d	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000154251.A.b.a.b.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00390000014180	ENSGT00940000153362.b.h	ENSGT00910000146216	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Golden snub-nosed monkey	MODERN SPECIES	2322	CCND1 (ENSRROG00000032723) #24	ENSRROG00000032169	LTO1 (ENSRROG00000034319)	FGF19 (ENSRROG00000032527) #26	FGF4 (ENSRROG00000028586) #27	FGF3 (ENSRROG00000043451) #28	ANO1 (ENSRROG00000033110) #30	FADD (ENSRROG00000041037) #31	ENSRROG00000035511	PPFIA1 (ENSRROG00000040126)	CTTN (ENSRROG00000040322)	ENSRROG00000033991	ENSRROG00000045526	SHANK2 (ENSRROG00000031929)	DHCR7 (ENSRROG00000041957) #21	NADSYN1 (ENSRROG00000026981) #22	ENSRROG00000034233	ENSRROG00000028333	OSBPL5 (ENSRROG00000042257)	CARS1 (ENSRROG00000041623)	ENSRROG00000031711	NAP1L4 (ENSRROG00000041303)	ENSRROG00000044553	SLC22A18 (ENSRROG00000042171)	ENSRROG00000043104	CDKN1C (ENSRROG00000019036)	ENSRROG00000028793	KCNQ1 (ENSRROG00000042831)	TRPM5 (ENSRROG00000038513)	TSSC4 (ENSRROG00000028278)	CD81 (ENSRROG00000043618)
Black snub-nosed monkey	MODERN SPECIES	100	LTO1 (ENSRBIG00000042427)	ENSRBIG00000036535	FGF19 (ENSRBIG00000032547) #26	FGF4 (ENSRBIG00000010219) #27	FGF3 (ENSRBIG00000030779) #28	ANO1 (ENSRBIG00000014113) #30	FADD (ENSRBIG00000036931) #31	PPFIA1 (ENSRBIG00000000739)	ENSRBIG00000042884	CTTN (ENSRBIG00000039974)	ENSRBIG00000034203	SHANK2 (ENSRBIG00000040196)	ENSRBIG00000042124	ENSRBIG00000028148	DHCR7 (ENSRBIG00000013070) #21	NADSYN1 (ENSRBIG00000040100) #22	ENSRBIG00000029581	MRGPRG (ENSRBIG00000034230)	OSBPL5 (ENSRBIG00000030395)	CARS1 (ENSRBIG00000033195)	ENSRBIG00000026652	NAP1L4 (ENSRBIG00000041467)	SLC22A18 (ENSRBIG00000037594)	ENSRBIG00000043210	ENSRBIG00000002107	KCNQ1 (ENSRBIG00000044068)	TRPM5 (ENSRBIG00000042703)	TSSC4 (ENSRBIG00000044192)	CD81 (ENSRBIG00000035117)	TSPAN32 (ENSRBIG00000033430)	C11orf21 (ENSRBIG00000039034)
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT01030000240235	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00530000067982	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Cebidae	ANCESTRAL SPECIES		ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT01030000240235	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b.h	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a	ENSGT00390000015440
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22
Capuchin	MODERN SPECIES	561										ANO1 (ENSCCAG00000021465) #30	FADD (ENSCCAG00000017910) #31	PPFIA1 (ENSCCAG00000029718)	CTTN (ENSCCAG00000034645)	SHANK2 (ENSCCAG00000021021)	DHCR7 (ENSCCAG00000037768) #21	NADSYN1 (ENSCCAG00000026674) #22	ENSCCAG00000027973
Bolivian squirrel monkey	MODERN SPECIES	184	IGHMBP2 (ENSSBOG00000021342)	MRGPRF (ENSSBOG00000022916)	TPCN2 (ENSSBOG00000036110) #23	ENSSBOG00000023740	CCND1 (ENSSBOG00000031704) #24	LTO1 (ENSSBOG00000030139)	FGF19 (ENSSBOG00000032296) #26	FGF4 (ENSSBOG00000020328) #27	FGF3 (ENSSBOG00000028072) #28	ANO1 (ENSSBOG00000025783) #30	FADD (ENSSBOG00000022673) #31	PPFIA1 (ENSSBOG00000020432)	CTTN (ENSSBOG00000021638)	SHANK2 (ENSSBOG00000033655)	DHCR7 (ENSSBOG00000034440) #21	NADSYN1 (ENSSBOG00000019773) #22
Marmoset	MODERN SPECIES	2	CCND1 (ENSCJAG00000044694) #24	ENSCJAG00000075469	LTO1 (ENSCJAG00000078318)	FGF19 (ENSCJAG00000075154) #26	FGF4 (ENSCJAG00000005026) #27	FGF3 (ENSCJAG00000009730) #28	ANO1 (ENSCJAG00000071717) #30	ENSCJAG00000086216	FADD (ENSCJAG00000000932) #31	PPFIA1 (ENSCJAG00000000936)	CTTN (ENSCJAG00000000985)	SHANK2 (ENSCJAG00000001019)	ENSCJAG00000066476	ENSCJAG00000070399	DHCR7 (ENSCJAG00000040023) #21	ENSCJAG00000085647 #22	ENSCJAG00000011506	MRGPRE (ENSCJAG00000074916)	OSBPL5 (ENSCJAG00000011522)	ENSCJAG00000086058	CARS1 (ENSCJAG00000011585)	NAP1L4 (ENSCJAG00000011636)	PHLDA2 (ENSCJAG00000011680)	SLC22A18 (ENSCJAG00000011682)	CDKN1C (ENSCJAG00000011703)	KCNQ1 (ENSCJAG00000011708)	TRPM5 (ENSCJAG00000014749)	TSSC4 (ENSCJAG00000052019)	CD81 (ENSCJAG00000014738)	TSPAN32 (ENSCJAG00000083464)	ENSCJAG00000072782
Mas night monkey	MODERN SPECIES	411	IGHMBP2 (ENSANAG00000027309)	MRGPRF (ENSANAG00000026421)	TPCN2 (ENSANAG00000022288) #23	ENSANAG00000022087	CCND1 (ENSANAG00000027376) #24	LTO1 (ENSANAG00000020841)	FGF19 (ENSANAG00000028313) #26	FGF4 (ENSANAG00000028917) #27	FGF3 (ENSANAG00000033426) #28	ANO1 (ENSANAG00000037157) #30	FADD (ENSANAG00000030818) #31	PPFIA1 (ENSANAG00000026851)	CTTN (ENSANAG00000023720)	SHANK2 (ENSANAG00000026955)	DHCR7 (ENSANAG00000028986) #21	NADSYN1 (ENSANAG00000028675) #22
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6600																ENSTSYG00000036774 #22
Tarsier	MODERN SPECIES	7231															DHCR7 (ENSTSYG00000033965) #21	ENSTSYG00000027133 #22
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Carnivora	ANCESTRAL SPECIES	7	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Caniformia	ANCESTRAL SPECIES	21	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Canidae	ANCESTRAL SPECIES	13	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Dog	MODERN SPECIES	9	MRGPRD (ENSCAFG00845006017)	MRGPRF (ENSCAFG00845005992)	TPCN2 (ENSCAFG00845005889) #23	CCND1 (ENSCAFG00845015348) #24	ENSCAFG00845015244	FGF19 (ENSCAFG00845015136) #26	FGF4 (ENSCAFG00845015112) #27	FGF3 (ENSCAFG00845015080) #28	ANO1 (ENSCAFG00845014688) #30	FADD (ENSCAFG00845014582) #31	PPFIA1 (ENSCAFG00845014251)	CTTN (ENSCAFG00845013798)	SHANK2 (ENSCAFG00845013433)	ENSCAFG00845013273	DHCR7 (ENSCAFG00845013203) #21	NADSYN1 (ENSCAFG00845012869) #22	MRGPRG (ENSCAFG00845012762)	OSBPL5 (ENSCAFG00845012537)	ENSCAFG00845012415	CARS1 (ENSCAFG00845012304)	NAP1L4 (ENSCAFG00845012135)	PHLDA2 (ENSCAFG00845012068)	SLC22A18 (ENSCAFG00845011917)	ENSCAFG00845011808	KCNQ1 (ENSCAFG00845011629)	TRPM5 (ENSCAFG00845011524)	TSSC4 (ENSCAFG00845011479)	ENSCAFG00845011433	ASCL2 (ENSCAFG00845011417)	TH (ENSCAFG00845011201)	INS (ENSCAFG00845011141)
Dingo	MODERN SPECIES	69	IGHMBP2 (ENSCAFG00020015362)	MRGPRD (ENSCAFG00020015370)	MRGPRF (ENSCAFG00020015373)	TPCN2 (ENSCAFG00020015381) #23	CCND1 (ENSCAFG00020015396) #24	ENSCAFG00020015398	FGF19 (ENSCAFG00020015401) #26	FGF4 (ENSCAFG00020015404) #27	FGF3 (ENSCAFG00020015407) #28	ANO1 (ENSCAFG00020015410) #30	FADD (ENSCAFG00020015414) #31	PPFIA1 (ENSCAFG00020015449)	CTTN (ENSCAFG00020016827)	SHANK2 (ENSCAFG00020016842)	DHCR7 (ENSCAFG00020016903) #21	NADSYN1 (ENSCAFG00020016999) #22	MRGPRG (ENSCAFG00020017170)	OSBPL5 (ENSCAFG00020017174)	ENSCAFG00020017184	CARS1 (ENSCAFG00020017188)	NAP1L4 (ENSCAFG00020017199)	PHLDA2 (ENSCAFG00020017218)	SLC22A18 (ENSCAFG00020017221)	CDKN1C (ENSCAFG00020017222)	KCNQ1 (ENSCAFG00020017230)	TRPM5 (ENSCAFG00020017310)	ENSCAFG00020017342	CD81 (ENSCAFG00020017346)	ENSCAFG00020017354	ASCL2 (ENSCAFG00020017372)	TH (ENSCAFG00020017377)
Red fox	MODERN SPECIES	49	MRGPRF (ENSVVUG00000004804)	TPCN2 (ENSVVUG00000004753) #23	CCND1 (ENSVVUG00000004739) #24	ENSVVUG00000004719	ENSVVUG00000004714	FGF19 (ENSVVUG00000004712) #26	FGF4 (ENSVVUG00000004705) #27	FGF3 (ENSVVUG00000004701) #28	ANO1 (ENSVVUG00000004627) #30	FADD (ENSVVUG00000004618) #31	PPFIA1 (ENSVVUG00000004563)	CTTN (ENSVVUG00000004541)	SHANK2 (ENSVVUG00000003559)	ENSVVUG00000003507	DHCR7 (ENSVVUG00000003503) #21	NADSYN1 (ENSVVUG00000003498) #22	ENSVVUG00000003496	MRGPRG (ENSVVUG00000003491)	OSBPL5 (ENSVVUG00000003474)	ENSVVUG00000003466	CARS (ENSVVUG00000003438)	NAP1L4 (ENSVVUG00000003425)	PHLDA2 (ENSVVUG00000003414)	SLC22A18 (ENSVVUG00000003406)	ENSVVUG00000003401	KCNQ1 (ENSVVUG00000003078)	TRPM5 (ENSVVUG00000002887)	ENSVVUG00000002862	CD81 (ENSVVUG00000002853)	ENSVVUG00000002786	ASCL2 (ENSVVUG00000002778)
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Mustelinae	DUPLICATION
Mustelinae	ANCESTRAL SPECIES	3	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152.q #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00940000160333	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a	ENSGT00390000015440	ENSGT00940000167688
Ferret	MODERN SPECIES	233	ENSMPUG00000004659	ENSMPUG00000019030	ENSMPUG00000004664	ENSMPUG00000004671	ENSMPUG00000004677	ANO1 (ENSMPUG00000004681) #30	FADD (ENSMPUG00000004702) #31	ENSMPUG00000004709	PPFIA1 (ENSMPUG00000004719)	ENSMPUG00000004738	CTTN (ENSMPUG00000004744)	SHANK2 (ENSMPUG00000004764)	ENSMPUG00000004778	ENSMPUG00000004796	DHCR7 (ENSMPUG00000004899) #21	ENSMPUG00000004904 #22	ENSMPUG00000004918	ENSMPUG00000004924	MRGPRG (ENSMPUG00000019032)	ENSMPUG00000004942	ENSMPUG00000005035	OSBPL5 (ENSMPUG00000004949)	ENSMPUG00000005039	CARS1 (ENSMPUG00000005051)	ENSMPUG00000005066	NAP1L4 (ENSMPUG00000005074)	SLC22A18 (ENSMPUG00000005089)	ENSMPUG00000005098	ENSMPUG00000005103	KCNQ1 (ENSMPUG00000005108)	TRPM5 (ENSMPUG00000005121)
American mink	MODERN SPECIES	265																ENSNVIG00000008754 #22	MRGPRG (ENSNVIG00000008739)	OSBPL5 (ENSNVIG00000008546)	ENSNVIG00000008512	CARS1 (ENSNVIG00000008287)	NAP1L4 (ENSNVIG00000008196)	SLC22A18 (ENSNVIG00000008024)	ENSNVIG00000008004	KCNQ1 (ENSNVIG00000007936)	TRPM5 (ENSNVIG00000007797)	TSSC4 (ENSNVIG00000007780)	CD81 (ENSNVIG00000007770)	ENSNVIG00000007752	ENSNVIG00000007717	INS (ENSNVIG00000007708)	ENSNVIG00000007697
Mustelinae	ANCESTRAL SPECIES																	ENSGT00390000010152.r #22
American mink	DUPLICATION
American mink	MODERN SPECIES	104	MRGPRD (ENSNVIG00000011721)	MRGPRF (ENSNVIG00000011699)	TPCN2 (ENSNVIG00000011621) #23	ENSNVIG00000011596 #24	LTO1 (ENSNVIG00000011554)	FGF19 (ENSNVIG00000011538) #26	FGF4 (ENSNVIG00000011535) #27	FGF3 (ENSNVIG00000011528) #28	ANO1 (ENSNVIG00000011432) #30	FADD (ENSNVIG00000011423) #31	PPFIA1 (ENSNVIG00000010291)	CTTN (ENSNVIG00000010121)	SHANK2 (ENSNVIG00000009980)	DHCR7 (ENSNVIG00000009959) #21	ENSNVIG00000009952 #22	ENSNVIG00000009913 #22
American mink	MODERN SPECIES	104	IGHMBP2 (ENSNVIG00000011737)	MRGPRD (ENSNVIG00000011721)	MRGPRF (ENSNVIG00000011699)	TPCN2 (ENSNVIG00000011621) #23	ENSNVIG00000011596 #24	LTO1 (ENSNVIG00000011554)	FGF19 (ENSNVIG00000011538) #26	FGF4 (ENSNVIG00000011535) #27	FGF3 (ENSNVIG00000011528) #28	ANO1 (ENSNVIG00000011432) #30	FADD (ENSNVIG00000011423) #31	PPFIA1 (ENSNVIG00000010291)	CTTN (ENSNVIG00000010121)	SHANK2 (ENSNVIG00000009980)	DHCR7 (ENSNVIG00000009959) #21	ENSNVIG00000009952 #22	ENSNVIG00000009913 #22
Ferret	MODERN SPECIES	399														ENSMPUG00000008216	ENSMPUG00000008192	ENSMPUG00000008127 #22	ENSMPUG00000008110	ENSMPUG00000008099	ENSMPUG00000008096	RDH13 (ENSMPUG00000008089)	EPS8L1 (ENSMPUG00000008071)	ENSMPUG00000020193	PPP1R12C (ENSMPUG00000007895)	TNNT1 (ENSMPUG00000007780)	TNNI3 (ENSMPUG00000007721)	DNAAF3 (ENSMPUG00000007713)	SYT5 (ENSMPUG00000007704)	ENSMPUG00000007675	TMEM86B (ENSMPUG00000007670)	PPP6R1 (ENSMPUG00000007655)	HSPBP1 (ENSMPUG00000007645)
Ursidae	ANCESTRAL SPECIES	2	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Giant Panda	MODERN SPECIES	7	MRGPRD (ENSAMEG00000027443)	MRGPRF (ENSAMEG00000001626)	TPCN2 (ENSAMEG00000001559) #23	ENSAMEG00000001950 #24	ENSAMEG00000001983	FGF19 (ENSAMEG00000029958) #26	FGF4 (ENSAMEG00000001992) #27	ENSAMEG00000025861 #28	ENSAMEG00000026287 #28	ANO1 (ENSAMEG00000007119) #30	FADD (ENSAMEG00000007199) #31	PPFIA1 (ENSAMEG00000007203)	CTTN (ENSAMEG00000007350)	SHANK2 (ENSAMEG00000007430)	DHCR7 (ENSAMEG00000007479) #21	ENSAMEG00000007497 #22	ENSAMEG00000019931	ENSAMEG00000007369	CARS1 (ENSAMEG00000005710)	NAP1L4 (ENSAMEG00000005815)	SLC22A18 (ENSAMEG00000002295)	CDKN1C (ENSAMEG00000028690)	KCNQ1 (ENSAMEG00000002069)	TRPM5 (ENSAMEG00000002252)	TSSC4 (ENSAMEG00000024550)	ENSAMEG00000002216	ENSAMEG00000002203	ASCL2 (ENSAMEG00000028742)	TH (ENSAMEG00000002179)	INS (ENSAMEG00000026511)	IGF2 (ENSAMEG00000002167)
Ursus	ANCESTRAL SPECIES	59					ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
American black bear	MODERN SPECIES	218													CTTN (ENSUAMG00000019171)	SHANK2 (ENSUAMG00000019174)	DHCR7 (ENSUAMG00000019441) #21	NADSYN1 (ENSUAMG00000019442) #22
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	221			MRGPRF (ENSUMAG00000007349)	TPCN2 (ENSUMAG00000007334) #23	ENSUMAG00000007327 #24	LTO1 (ENSUMAG00000007312)	FGF19 (ENSUMAG00000007302) #26	ENSUMAG00000007295 #27	ANO1 (ENSUMAG00000007174) #30	ENSUMAG00000007134	PPFIA1 (ENSUMAG00000007084)	CTTN (ENSUMAG00000007071)	ENSUMAG00000007048	ENSUMAG00000007026	DHCR7 (ENSUMAG00000007009) #21	ENSUMAG00000007007 #22	ENSUMAG00000007000 #22	ENSUMAG00000006998	OSBPL5 (ENSUMAG00000006967)	ENSUMAG00000006941	CARS1 (ENSUMAG00000006494)	NAP1L4 (ENSUMAG00000006387)	SLC22A18 (ENSUMAG00000006323)	ENSUMAG00000006307	ENSUMAG00000006305	ENSUMAG00000006301	ENSUMAG00000006299	CD81 (ENSUMAG00000006294)	ENSUMAG00000006278	TH (ENSUMAG00000006253)	ENSUMAG00000006247
Polar bear	MODERN SPECIES	221		MRGPRF (ENSUMAG00000007349)	TPCN2 (ENSUMAG00000007334) #23	ENSUMAG00000007327 #24	LTO1 (ENSUMAG00000007312)	FGF19 (ENSUMAG00000007302) #26	ENSUMAG00000007295 #27	ANO1 (ENSUMAG00000007174) #30	ENSUMAG00000007134	PPFIA1 (ENSUMAG00000007084)	CTTN (ENSUMAG00000007071)	ENSUMAG00000007048	ENSUMAG00000007026	DHCR7 (ENSUMAG00000007009) #21	ENSUMAG00000007007 #22	ENSUMAG00000007000 #22	ENSUMAG00000006998	OSBPL5 (ENSUMAG00000006967)	ENSUMAG00000006941	CARS1 (ENSUMAG00000006494)	NAP1L4 (ENSUMAG00000006387)	SLC22A18 (ENSUMAG00000006323)	ENSUMAG00000006307	ENSUMAG00000006305	ENSUMAG00000006301	ENSUMAG00000006299	CD81 (ENSUMAG00000006294)	ENSUMAG00000006278	TH (ENSUMAG00000006253)	ENSUMAG00000006247	ENSUMAG00000006241
Felidae	ANCESTRAL SPECIES		ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Cat	MODERN SPECIES	241	TPCN2 (ENSFCAG00000002792) #23	CCND1 (ENSFCAG00000008358) #24	LTO1 (ENSFCAG00000026606)	FGF19 (ENSFCAG00000027163) #26	FGF4 (ENSFCAG00000036639) #27	FGF3 (ENSFCAG00000043034) #28	ANO1 (ENSFCAG00000006735) #30	FADD (ENSFCAG00000042813) #31	PPFIA1 (ENSFCAG00000004765)	CTTN (ENSFCAG00000004767)	SHANK2 (ENSFCAG00000004768)	ENSFCAG00000050075	ENSFCAG00000050101	ENSFCAG00000031056	DHCR7 (ENSFCAG00000004115) #21	NADSYN1 (ENSFCAG00000004116) #22	OSBPL5 (ENSFCAG00000006947)	ENSFCAG00000048757	CARS1 (ENSFCAG00000006946)	NAP1L4 (ENSFCAG00000006945)	PHLDA2 (ENSFCAG00000045476)	SLC22A18 (ENSFCAG00000006944)	CDKN1C (ENSFCAG00000044319)	KCNQ1 (ENSFCAG00000006943)	TRPM5 (ENSFCAG00000022628)	TSSC4 (ENSFCAG00000043860)	CD81 (ENSFCAG00000006941)	TSPAN32 (ENSFCAG00000006936)	TH (ENSFCAG00000006939)	ENSFCAG00000045734	IGF2 (ENSFCAG00000032546)
Panthera	ANCESTRAL SPECIES	18	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
leopard	MODERN SPECIES	64	MRPL21 (ENSPPRG00000024109)	IGHMBP2 (ENSPPRG00000024194)	MRGPRF (ENSPPRG00000024308)	TPCN2 (ENSPPRG00000024406) #23	CCND1 (ENSPPRG00000024642) #24	LTO1 (ENSPPRG00000024675)	FGF19 (ENSPPRG00000024723) #26	FGF4 (ENSPPRG00000024731) #27	FGF3 (ENSPPRG00000024743) #28	ANO1 (ENSPPRG00000024762) #30	FADD (ENSPPRG00000024863) #31	PPFIA1 (ENSPPRG00000024878)	CTTN (ENSPPRG00000024935)	SHANK2 (ENSPPRG00000024978)	DHCR7 (ENSPPRG00000025025) #21	NADSYN1 (ENSPPRG00000025032) #22	OSBPL5 (ENSPPRG00000025061)	CARS1 (ENSPPRG00000022117)	ENSPPRG00000020522	NAP1L4 (ENSPPRG00000018679)	SLC22A18 (ENSPPRG00000017788)	ENSPPRG00000016858	KCNQ1 (ENSPPRG00000015448)
lion	MODERN SPECIES	22								ANO1 (ENSPLOG00000018940) #30	FADD (ENSPLOG00000018885) #31	PPFIA1 (ENSPLOG00000018760)	CTTN (ENSPLOG00000018506)	ENSPLOG00000018436	SHANK2 (ENSPLOG00000017841)	DHCR7 (ENSPLOG00000017721) #21	ENSPLOG00000017689	NADSYN1 (ENSPLOG00000017610) #22	OSBPL5 (ENSPLOG00000017070)	ENSPLOG00000017015	CARS1 (ENSPLOG00000016931)	ENSPLOG00000016887	NAP1L4 (ENSPLOG00000016825)	PHLDA2 (ENSPLOG00000016799)	SLC22A18 (ENSPLOG00000016642)	ENSPLOG00000016594	KCNQ1 (ENSPLOG00000016496)	TRPM5 (ENSPLOG00000015974)	TSSC4 (ENSPLOG00000015891)	CD81 (ENSPLOG00000015845)	ENSPLOG00000015815	ASCL2 (ENSPLOG00000015795)	TH (ENSPLOG00000015600)
Tiger	MODERN SPECIES	387														ENSPTIG00000007713	DHCR7 (ENSPTIG00000007688) #21	ENSPTIG00000007665 #22	OSBPL5 (ENSPTIG00000007490)	CARS1 (ENSPTIG00000007355)	NAP1L4 (ENSPTIG00000007175)	ENSPTIG00000007007	CD81 (ENSPTIG00000006951)	ENSPTIG00000006789	TH (ENSPTIG00000006730)	ENSPTIG00000006665	ENSPTIG00000006615	LSP1 (ENSPTIG00000006406)	ENSPTIG00000006383	IFITM10 (ENSPTIG00000006347)
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Equus	ANCESTRAL SPECIES	11	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00950000182857.a.a.a	ENSGT00940000155733.a.a	ENSGT00940000160892	ENSGT01030000234588.b.b.b.b.a	ENSGT00940000153901.a.b	ENSGT00390000016727	ENSGT00940000158477	ENSGT00390000007739	ENSGT00990000213591	ENSGT00940000160745	ENSGT00920000150769	ENSGT00390000015440	ENSGT00950000182885.C.a	ENSGT00940000163041	ENSGT00390000003287
Donkey	MODERN SPECIES	8											ENSEASG00005030818	ENSEASG00005010991	SHANK2 (ENSEASG00005011001)	ENSEASG00005029190	ENSEASG00005011053 #21	ENSEASG00005011055 #22	ENSEASG00005029336	ENSEASG00005026335	ENSEASG00005029562	ENSEASG00005029969	ENSEASG00005036214	ENSEASG00005000524	CTSD (ENSEASG00005000516)	ENSEASG00005000511	TNNI2 (ENSEASG00005000506)	LSP1 (ENSEASG00005000499)	TNNT3 (ENSEASG00005000471)	ENSEASG00005023686	ENSEASG00005031299	ENSEASG00005000423	ENSEASG00005000405
Horse	MODERN SPECIES	3	ENSECAG00000019576	MRGPRF (ENSECAG00000019588)	TPCN2 (ENSECAG00000019619) #23	CCND1 (ENSECAG00000038536) #24	LTO1 (ENSECAG00000020265)	FGF19 (ENSECAG00000036646) #26	FGF4 (ENSECAG00000031103) #27	FGF3 (ENSECAG00000031321) #28	ANO1 (ENSECAG00000020314) #30	FADD (ENSECAG00000021437) #31	PPFIA1 (ENSECAG00000026889)	CTTN (ENSECAG00000021450)	SHANK2 (ENSECAG00000022208)	ACTE1 (ENSECAG00000023320)	DHCR7 (ENSECAG00000023341) #21	NADSYN1 (ENSECAG00000023476) #22	ENSECAG00000031265	ENSECAG00000041951	ENSECAG00000037254	ENSECAG00000030236	CTSD (ENSECAG00000039088)	ENSECAG00000015509	LSP1 (ENSECAG00000015487)	PRR33 (ENSECAG00000032952)	TNNT3 (ENSECAG00000023971)	ENSECAG00000054996	ENSECAG00000028346	ENSECAG00000039118	TH (ENSECAG00000024625)	ENSECAG00000037796	TSPAN32 (ENSECAG00000024627)
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Greater horseshoe bat	MODERN SPECIES	2	IGHMBP2 (ENSRFEG00010020811)	ENSRFEG00010020788	MRGPRF (ENSRFEG00010020778)	TPCN2 (ENSRFEG00010020715) #23	CCND1 (ENSRFEG00010020663) #24	LTO1 (ENSRFEG00010020618)	FGF19 (ENSRFEG00010020594) #26	FGF4 (ENSRFEG00010020567) #27	FGF3 (ENSRFEG00010020546) #28	ANO1 (ENSRFEG00010020393) #30	FADD (ENSRFEG00010020342) #31	PPFIA1 (ENSRFEG00010020279)	CTTN (ENSRFEG00010020070)	SHANK2 (ENSRFEG00010019833)	DHCR7 (ENSRFEG00010019782) #21	NADSYN1 (ENSRFEG00010019709) #22	ENSRFEG00010019689	MRGPRG (ENSRFEG00010019682)	ENSRFEG00010019667	ENSRFEG00010019649	OSBPL5 (ENSRFEG00010019508)	ENSRFEG00010019461	CARS1 (ENSRFEG00010019344)	NAP1L4 (ENSRFEG00010019235)	PHLDA2 (ENSRFEG00010019209)	SLC22A18 (ENSRFEG00010019147)	CDKN1C (ENSRFEG00010019122)	KCNQ1 (ENSRFEG00010018942)	TRPM5 (ENSRFEG00010018900)	ENSRFEG00010018863	CD81 (ENSRFEG00010018819)
Microbat	MODERN SPECIES	2316															DHCR7 (ENSMLUG00000008579) #21	NADSYN1 (ENSMLUG00000017731) #22
Megabat	MODERN SPECIES	4902																NADSYN1 (ENSPVAG00000013090) #22
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Suina	ANCESTRAL SPECIES	14	ENSGT01030000234639.A.b.a.b.b.d	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159535.c	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a	ENSGT00390000015440	ENSGT00940000167688
Pig	MODERN SPECIES	10	MRGPRF (ENSSSCG00000034441)	TPCN2 (ENSSSCG00000012875) #23	CCND1 (ENSSSCG00000037900) #24	LTO1 (ENSSSCG00000012874)	FGF19 (ENSSSCG00000012871) #26	FGF4 (ENSSSCG00000012870) #27	FGF3 (ENSSSCG00000061049) #28	ANO1 (ENSSSCG00000024158) #30	FADD (ENSSSCG00000054981) #31	PPFIA1 (ENSSSCG00000037451)	CTTN (ENSSSCG00000031769)	SHANK2 (ENSSSCG00000033043)	ENSSSCG00000062960	ENSSSCG00000049374	DHCR7 (ENSSSCG00000021181) #21	NADSYN1 (ENSSSCG00000012859) #22	OSBPL5 (ENSSSCG00000012862)	CARS1 (ENSSSCG00000012857)	NAP1L4 (ENSSSCG00000012856)	PHLDA2 (ENSSSCG00000021597)	SLC22A18 (ENSSSCG00000012855)	CDKN1C (ENSSSCG00000040461)	KCNQ1 (ENSSSCG00000039556)	TRPM5 (ENSSSCG00000039644)	TSSC4 (ENSSSCG00000036015)	CD81 (ENSSSCG00000039243)	ENSSSCG00000033880	ASCL2 (ENSSSCG00000033507)	TH (ENSSSCG00000039767)	INS (ENSSSCG00000033740)	ENSSSCG00000035293
Chacoan peccary	MODERN SPECIES	922													ENSCWAG00000019900	SHANK2 (ENSCWAG00000019270)	DHCR7 (ENSCWAG00000019214) #21	NADSYN1 (ENSCWAG00000019176) #22	ENSCWAG00000019164
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Camelidae	ANCESTRAL SPECIES	18	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a	ENSGT00390000015440	ENSGT00920000150769
Arabian camel	MODERN SPECIES	1	TPCN2 (ENSCDRG00005006714) #23	CCND1 (ENSCDRG00005006610) #24	LTO1 (ENSCDRG00005021470)	FGF19 (ENSCDRG00005021465) #26	FGF4 (ENSCDRG00005021463) #27	ENSCDRG00005021451 #28	ANO1 (ENSCDRG00005021443) #30	FADD (ENSCDRG00005021431) #31	PPFIA1 (ENSCDRG00005021405)	CTTN (ENSCDRG00005021382)	ENSCDRG00005021368	ENSCDRG00005021363	ENSCDRG00005021359	ENSCDRG00005021353	DHCR7 (ENSCDRG00005021350) #21	NADSYN1 (ENSCDRG00005021345) #22	ENSCDRG00005021343	OSBPL5 (ENSCDRG00005021328)	ENSCDRG00005021320	CARS1 (ENSCDRG00005021307)	ENSCDRG00005021276	SLC22A18 (ENSCDRG00005021267)	ENSCDRG00005021259	KCNQ1 (ENSCDRG00005021166)	TRPM5 (ENSCDRG00005021069)	TSSC4 (ENSCDRG00005021044)	CD81 (ENSCDRG00005021026)	ENSCDRG00005021011	ASCL2 (ENSCDRG00005021008)	TH (ENSCDRG00005020996)	INS (ENSCDRG00005020986)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT01070000254034	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Cetacea	ANCESTRAL SPECIES	4	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426.d	ENSGT00390000009426.c.a.a.a	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426.d	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426.d	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426.d	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426.c.a.a.a	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a	ENSGT00390000015440
Beluga whale	MODERN SPECIES	7	IGHMBP2 (ENSDLEG00000006566)	ENSDLEG00000006544	MRGPRF (ENSDLEG00000006538)	TPCN2 (ENSDLEG00000006495) #23	CCND1 (ENSDLEG00000006485) #24	ENSDLEG00000006473	ENSDLEG00000006464 #26	FGF4 (ENSDLEG00000006458) #27	FGF3 (ENSDLEG00000006451) #28	ANO1 (ENSDLEG00000006391) #30	ENSDLEG00000006384 #31	PPFIA1 (ENSDLEG00000006322)	CTTN (ENSDLEG00000006293)	SHANK2 (ENSDLEG00000006237)	DHCR7 (ENSDLEG00000006218) #21	NADSYN1 (ENSDLEG00000006200) #22	MRGPRG (ENSDLEG00000006188)	OSBPL5 (ENSDLEG00000006170)	ENSDLEG00000006166	CARS1 (ENSDLEG00000006156)	NAP1L4 (ENSDLEG00000006119)	PHLDA2 (ENSDLEG00000006108)	SLC22A18 (ENSDLEG00000006083)	CDKN1C (ENSDLEG00000006073)	KCNQ1 (ENSDLEG00000006029)	ENSDLEG00000006016	CD81 (ENSDLEG00000006001)	TSPAN32 (ENSDLEG00000005978)	ASCL2 (ENSDLEG00000005977)	TH (ENSDLEG00000005963)	INS (ENSDLEG00000005954)
Narwhal	MODERN SPECIES	314	IGHMBP2 (ENSMMNG00015021229)	ENSMMNG00015021257	MRGPRF (ENSMMNG00015021269)	TPCN2 (ENSMMNG00015021380) #23	CCND1 (ENSMMNG00015021479) #24	ENSMMNG00015021499	FGF19 (ENSMMNG00015021518) #26	FGF4 (ENSMMNG00015021528) #27	ENSMMNG00015021536 #28	ANO1 (ENSMMNG00015021557) #30	FADD (ENSMMNG00015021617) #31	PPFIA1 (ENSMMNG00015016039)	CTTN (ENSMMNG00015016600)	SHANK2 (ENSMMNG00015016892)	DHCR7 (ENSMMNG00015017225) #21	NADSYN1 (ENSMMNG00015017289) #22	MRGPRG (ENSMMNG00015017407)	OSBPL5 (ENSMMNG00015017448)	CARS1 (ENSMMNG00015017665)	NAP1L4 (ENSMMNG00015017808)	PHLDA2 (ENSMMNG00015017908)	SLC22A18 (ENSMMNG00015017963)	CDKN1C (ENSMMNG00015018063)	KCNQ1 (ENSMMNG00015018106)	TSSC4 (ENSMMNG00015018514)	CD81 (ENSMMNG00015018532)	ENSMMNG00015018641	ASCL2 (ENSMMNG00015018666)	TH (ENSMMNG00015018728)	INS (ENSMMNG00015018959)	ENSMMNG00015018992
Vaquita	MODERN SPECIES	19	IGHMBP2 (ENSPSNG00000016024)	MRGPRF (ENSPSNG00000016200)	TPCN2 (ENSPSNG00000016263) #23	CCND1 (ENSPSNG00000016389) #24	ENSPSNG00000016465	FGF19 (ENSPSNG00000016539) #26	FGF4 (ENSPSNG00000016594) #27	ENSPSNG00000016648 #28	ANO1 (ENSPSNG00000016772) #30	FADD (ENSPSNG00000016987) #31	PPFIA1 (ENSPSNG00000017107)	CTTN (ENSPSNG00000017766)	ENSPSNG00000017888	ENSPSNG00000018400	DHCR7 (ENSPSNG00000018441) #21	NADSYN1 (ENSPSNG00000018498) #22	OSBPL5 (ENSPSNG00000018671)	CARS1 (ENSPSNG00000018889)	NAP1L4 (ENSPSNG00000019014)	PHLDA2 (ENSPSNG00000004151)	ENSPSNG00000004172	CDKN1C (ENSPSNG00000004197)	KCNQ1 (ENSPSNG00000004226)	ENSPSNG00000004266	TSSC4 (ENSPSNG00000004290)	CD81 (ENSPSNG00000004314)	ENSPSNG00000004364	ASCL2 (ENSPSNG00000004419)	TH (ENSPSNG00000004465)	INS (ENSPSNG00000004563)	ENSPSNG00000004577
Dolphin	MODERN SPECIES	1952															DHCR7 (ENSTTRG00000005781) #21	NADSYN1 (ENSTTRG00000005810) #22
Sperm whale	MODERN SPECIES	9	MRGPRF (ENSPCTG00005012133)	IGHMBP2 (ENSPCTG00005012180)	MRPL21 (ENSPCTG00005012277)	CCND1 (ENSPCTG00005012304) #24	LTO1 (ENSPCTG00005012359)	FGF19 (ENSPCTG00005012534) #26	FGF4 (ENSPCTG00005012579) #27	FGF3 (ENSPCTG00005012631) #28	ANO1 (ENSPCTG00005012731) #30	ENSPCTG00005012992 #31	ENSPCTG00005013014 #31	PPFIA1 (ENSPCTG00005013091)	CTTN (ENSPCTG00005013533)	SHANK2 (ENSPCTG00005014075)	DHCR7 (ENSPCTG00005015137) #21	NADSYN1 (ENSPCTG00005015196) #22	MRGPRG (ENSPCTG00005015332)	OSBPL5 (ENSPCTG00005015374)	ENSPCTG00005015621	CARS (ENSPCTG00005015659)	NAP1L4 (ENSPCTG00005016012)	PHLDA2 (ENSPCTG00005016100)	SLC22A18 (ENSPCTG00005016130)	ENSPCTG00005016364	ENSPCTG00005016452	KCNQ1 (ENSPCTG00005016511)	TSSC4 (ENSPCTG00005017755)	CD81 (ENSPCTG00005007897)	ENSPCTG00005007939	ASCL2 (ENSPCTG00005008040)	TH (ENSPCTG00005008078)
Blue whale	MODERN SPECIES	19	MRPL21 (ENSBMSG00010005141)	IGHMBP2 (ENSBMSG00010005154)	MRGPRF (ENSBMSG00010005176)	TPCN2 (ENSBMSG00010005216) #23	CCND1 (ENSBMSG00010005276) #24	ENSBMSG00010005297	FGF19 (ENSBMSG00010005311) #26	FGF4 (ENSBMSG00010005321) #27	FGF3 (ENSBMSG00010005331) #28	ANO1 (ENSBMSG00010005353) #30	FADD (ENSBMSG00010005386) #31	PPFIA1 (ENSBMSG00010005441)	CTTN (ENSBMSG00010005521)	SHANK2 (ENSBMSG00010005601)	DHCR7 (ENSBMSG00010005765) #21	NADSYN1 (ENSBMSG00010005789) #22	OSBPL5 (ENSBMSG00010005841)	ENSBMSG00010005900	CARS1 (ENSBMSG00010006110)	NAP1L4 (ENSBMSG00010006393)	ENSBMSG00010006422	PHLDA2 (ENSBMSG00010006426)	SLC22A18 (ENSBMSG00010006448)	CDKN1C (ENSBMSG00010006481)	KCNQ1 (ENSBMSG00010006590)	ENSBMSG00010006642	TSSC4 (ENSBMSG00010006656)	CD81 (ENSBMSG00010006672)	ENSBMSG00010006716	ASCL2 (ENSBMSG00010006774)	TH (ENSBMSG00010006787)
Pecora	ANCESTRAL SPECIES	13	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287
Yarkand deer	MODERN SPECIES	11	TPCN2 (ENSCHYG00000000093) #23	CCND1 (ENSCHYG00000000255) #24	LTO1 (ENSCHYG00000000282)	FGF19 (ENSCHYG00000000308) #26	FGF4 (ENSCHYG00000000320) #27	FGF3 (ENSCHYG00000000327) #28	ANO1 (ENSCHYG00000000377) #30	FADD (ENSCHYG00000000532) #31	ENSCHYG00000000547	ENSCHYG00000000552	PPFIA1 (ENSCHYG00000000593)	ENSCHYG00000000798	SHANK2 (ENSCHYG00000000934)	ENSCHYG00000001247	DHCR7 (ENSCHYG00000001261) #21	NADSYN1 (ENSCHYG00000001306) #22	ENSCHYG00000001517	MRGPRG (ENSCHYG00000001526)	OSBPL5 (ENSCHYG00000001576)	ENSCHYG00000001703	ENSCHYG00000001719	CARS1 (ENSCHYG00000001793)	NAP1L4 (ENSCHYG00000001968)	PHLDA2 (ENSCHYG00000002027)	SLC22A18 (ENSCHYG00000002046)	CDKN1C (ENSCHYG00000002075)	KCNQ1 (ENSCHYG00000002120)	ENSCHYG00000002194	TRPM5 (ENSCHYG00000002214)	CD81 (ENSCHYG00000002329)	ENSCHYG00000002365
Percora_a	ANCESTRAL SPECIES	16	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Siberian musk deer	MODERN SPECIES	1225									ANO1 (ENSMMSG00000023035) #30	FADD (ENSMMSG00000023020) #31	ENSMMSG00000023015	PPFIA1 (ENSMMSG00000022901)	CTTN (ENSMMSG00000022818)	SHANK2 (ENSMMSG00000022477)	DHCR7 (ENSMMSG00000022424) #21	NADSYN1 (ENSMMSG00000022374) #22	MRGPRG (ENSMMSG00000022355)	OSBPL5 (ENSMMSG00000022304)	CARS1 (ENSMMSG00000022020)	NAP1L4 (ENSMMSG00000021913)	PHLDA2 (ENSMMSG00000021884)	SLC22A18 (ENSMMSG00000021861)	CDKN1C (ENSMMSG00000021836)	KCNQ1 (ENSMMSG00000021724)	TRPM5 (ENSMMSG00000021095)	TSSC4 (ENSMMSG00000021010)	CD81 (ENSMMSG00000020956)	ENSMMSG00000020937	ASCL2 (ENSMMSG00000020930)	TH (ENSMMSG00000020791)	INS (ENSMMSG00000020760)
Bovidae	ANCESTRAL SPECIES	16	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b.b.b	ENSGT00930000151070.d.b.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041
Caprinae	ANCESTRAL SPECIES	20	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b.b.b	ENSGT00390000006347.a.k	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Rambouillet Sheep	MODERN SPECIES	13	MRGPRF (ENSOARG00020017039)	SMIM38 (ENSOARG00020017868)	CCND1 (ENSOARG00020018440) #24	LTO1 (ENSOARG00020018493)	FGF19 (ENSOARG00020018648) #26	FGF4 (ENSOARG00020018705) #27	FGF3 (ENSOARG00020018755) #28	ANO1 (ENSOARG00020018806) #30	FADD (ENSOARG00020019152) #31	ENSOARG00020019183	PPFIA1 (ENSOARG00020019227)	CTTN (ENSOARG00020019665)	SHANK2 (ENSOARG00020020051)	ENSOARG00020020696	DHCR7 (ENSOARG00020020761) #21	NADSYN1 (ENSOARG00020020816) #22	MRGPRG (ENSOARG00020020951)	ENSOARG00020020976	CARS1 (ENSOARG00020021033)	NAP1L4 (ENSOARG00020021375)	PHLDA2 (ENSOARG00020021427)	SLC22A18 (ENSOARG00020021446)	CDKN1C (ENSOARG00020021520)	TRPM5 (ENSOARG00020006369)	TSSC4 (ENSOARG00020007200)	CD81 (ENSOARG00020007240)	ASCL2 (ENSOARG00020007290)	ENSOARG00020007308	TH (ENSOARG00020007423)	INS (ENSOARG00020007731)	IGF2 (ENSOARG00020007754)
Goat	MODERN SPECIES	21	MRGPRF (ENSCHIG00000024512)	TPCN2 (ENSCHIG00000024724) #23	CCND1 (ENSCHIG00000010534) #24	LTO1 (ENSCHIG00000016576)	FGF19 (ENSCHIG00000012980) #26	FGF4 (ENSCHIG00000010447) #27	FGF3 (ENSCHIG00000001606) #28	ANO1 (ENSCHIG00000025110) #30	FADD (ENSCHIG00000008257) #31	ENSCHIG00000020155	PPFIA1 (ENSCHIG00000006687)	CTTN (ENSCHIG00000026835)	SHANK2 (ENSCHIG00000023742)	ENSCHIG00000020525	DHCR7 (ENSCHIG00000014907) #21	NADSYN1 (ENSCHIG00000007275) #22	OSBPL5 (ENSCHIG00000024291)	ENSCHIG00000016294	ENSCHIG00000023289	NAP1L4 (ENSCHIG00000016820)	PHLDA2 (ENSCHIG00000011165)	SLC22A18 (ENSCHIG00000017098)	CDKN1C (ENSCHIG00000012528)	KCNQ1 (ENSCHIG00000020793)	TRPM5 (ENSCHIG00000002319)	TSSC4 (ENSCHIG00000011835)	CD81 (ENSCHIG00000009589)	ENSCHIG00000015802	ASCL2 (ENSCHIG00000003965)	TH (ENSCHIG00000026162)	INS (ENSCHIG00000011044)
Bovinae	ANCESTRAL SPECIES	24	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
American bison	MODERN SPECIES	3011	MRGPRD (ENSBBBG00000002343)	MRGPRF (ENSBBBG00000012368)	TPCN2 (ENSBBBG00000012427) #23	ENSBBBG00000002380 #24	ENSBBBG00000002382 #24	LTO1 (ENSBBBG00000012464)	FGF19 (ENSBBBG00000012472) #26	FGF4 (ENSBBBG00000012474) #27	ANO1 (ENSBBBG00000012506) #30	FADD (ENSBBBG00000012511) #31	ENSBBBG00000012521	PPFIA1 (ENSBBBG00000012561)	CTTN (ENSBBBG00000002407)	SHANK2 (ENSBBBG00000012602)	DHCR7 (ENSBBBG00000012621) #21	NADSYN1 (ENSBBBG00000006985) #22	MRGPRG (ENSBBBG00000012662)	OSBPL5 (ENSBBBG00000002460)	ENSBBBG00000012752	NAP1L4 (ENSBBBG00000001798)	ENSBBBG00000012767	ENSBBBG00000012771	KCNQ1 (ENSBBBG00000012798)	ENSBBBG00000002482	TOLLIP (ENSBBBG00000012806)	ENSBBBG00000008146	ENSBBBG00000001789	ENSBBBG00000001787	DUSP8 (ENSBBBG00000012818)	KRTAP5-7 (ENSBBBG00000001772)	ENSBBBG00000012831
Bos	ANCESTRAL SPECIES	11	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Bos_b	ANCESTRAL SPECIES	10	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00940000163041	ENSGT00950000182885.C.a
Cow	MODERN SPECIES	21	MRGPRF (ENSBTAG00000015185)	TPCN2 (ENSBTAG00000015183) #23	LTO1 (ENSBTAG00000011898)	CCND1 (ENSBTAG00000017514) #24	FGF19 (ENSBTAG00000017285) #26	FGF4 (ENSBTAG00000012563) #27	FGF3 (ENSBTAG00000008623) #28	ANO1 (ENSBTAG00000009997) #30	FADD (ENSBTAG00000018274) #31	ENSBTAG00000053788	PPFIA1 (ENSBTAG00000022188)	CTTN (ENSBTAG00000006071)	SHANK2 (ENSBTAG00000003171)	ACTE1 (ENSBTAG00000004212)	DHCR7 (ENSBTAG00000016465) #21	NADSYN1 (ENSBTAG00000016470) #22	MRGPRG (ENSBTAG00000031271)	OSBPL5 (ENSBTAG00000001077)	ENSBTAG00000039129	CARS1 (ENSBTAG00000010777)	ENSBTAG00000048649	NAP1L4 (ENSBTAG00000022160)	PHLDA2 (ENSBTAG00000031194)	SLC22A18 (ENSBTAG00000012742)	CDKN1C (ENSBTAG00000031184)	KCNQ1 (ENSBTAG00000010986)	TRPM5 (ENSBTAG00000046662)	TSSC4 (ENSBTAG00000047793)	CD81 (ENSBTAG00000047495)	TSPAN32 (ENSBTAG00000002702)	ASCL2 (ENSBTAG00000026769)
Hybrid Bos Indicus	MODERN SPECIES	21	MRGPRF (ENSBIXG00005022567)	TPCN2 (ENSBIXG00005005450) #23	CCND1 (ENSBIXG00005003878) #24	LTO1 (ENSBIXG00005022702)	FGF19 (ENSBIXG00005022715) #26	FGF4 (ENSBIXG00005022740) #27	FGF3 (ENSBIXG00005003897) #28	ANO1 (ENSBIXG00005022912) #30	FADD (ENSBIXG00005022985) #31	ENSBIXG00005023006	PPFIA1 (ENSBIXG00005003994)	CTTN (ENSBIXG00005023643)	SHANK2 (ENSBIXG00005004100)	ENSBIXG00005023997	DHCR7 (ENSBIXG00005024034) #21	NADSYN1 (ENSBIXG00005024203) #22	MRGPRG (ENSBIXG00005024242)	OSBPL5 (ENSBIXG00005024555)	ENSBIXG00005024606	ENSBIXG00005002577	CARS1 (ENSBIXG00005024753)	NAP1L4 (ENSBIXG00005024918)	ENSBIXG00005024991	ENSBIXG00005025052	ENSBIXG00005025103	KCNQ1 (ENSBIXG00005004279)	TRPM5 (ENSBIXG00005025223)	TSSC4 (ENSBIXG00005004292)	CD81 (ENSBIXG00005025283)	ENSBIXG00005004304	ASCL2 (ENSBIXG00005025321)
Bos_a	ANCESTRAL SPECIES	34	ENSGT01030000234639.A.b.a.a	ENSGT00940000159763 #23	ENSGT00940000157816 #24	ENSGT00390000009426	ENSGT00990000205605	ENSGT00940000160601 #26	ENSGT00940000158825 #27	ENSGT00940000161128 #28	ENSGT00940000157182 #30	ENSGT00390000002105 #31	ENSGT00960000191094	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.a.a	ENSGT00940000159535	ENSGT00930000151070.d.b.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00390000011846	ENSGT00940000158805.a	ENSGT00390000003287	ENSGT00950000182885.C.a	ENSGT00390000015440
Wild yak	MODERN SPECIES	1737														ENSBMUG00000010525	DHCR7 (ENSBMUG00000010509) #21	NADSYN1 (ENSBMUG00000010489) #22	MRGPRG (ENSBMUG00000010477)
Domestic yak	MODERN SPECIES	21	NDUFV1 (ENSBGRG00000013540)	TBX10 (ENSBGRG00000013152)	ENSBGRG00000012721	ENSBGRG00000012448	ENSBGRG00000008704	ENSBGRG00000008684	ENSBGRG00000008216	ENSBGRG00000008155	CCND1 (ENSBGRG00000024441) #24	ENSBGRG00000024404	ENSBGRG00000024377 #26	FGF4 (ENSBGRG00000024355) #27	ENSBGRG00000024302 #28	FADD (ENSBGRG00000023022) #31	DHCR7 (ENSBGRG00000017928) #21	ENSBGRG00000017907 #22	ENSBGRG00000015824	ENSBGRG00000015239	ENSBGRG00000015190	ENSBGRG00000014821	ENSBGRG00000012314	ENSBGRG00000012167	INS (ENSBGRG00000010351)	ENSBGRG00000010105	ENSBGRG00000010062	ENSBGRG00000010016	ENSBGRG00000009994	ENSBGRG00000009727	ENSBGRG00000007731	ENSBGRG00000007682	ENSBGRG00000007458
Atlantogenata	ANCESTRAL SPECIES	171														ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000161001
Afrotheria	ANCESTRAL SPECIES	210														ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000161001
Afrotheria_a	ANCESTRAL SPECIES	210														ENSGT00940000163884	ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT00940000159535	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000160333	ENSGT00940000161001
Elephant	MODERN SPECIES	119														ENSLAFG00000031144	DHCR7 (ENSLAFG00000005674) #21	NADSYN1 (ENSLAFG00000030417) #22	ENSLAFG00000025899	ENSLAFG00000031027	ENSLAFG00000031472	ENSLAFG00000026783	ENSLAFG00000030153	OSBPL5 (ENSLAFG00000022174)	CARS1 (ENSLAFG00000005612)	NAP1L4 (ENSLAFG00000005602)	SLC22A18 (ENSLAFG00000032777)
Hyrax	MODERN SPECIES	7799																NADSYN1 (ENSPCAG00000008198) #22
Tenrec	MODERN SPECIES	6628																ENSETEG00000013111 #22
Xenarthra	ANCESTRAL SPECIES	951															ENSGT00390000000417.a.b #21	ENSGT00390000010152 #22	ENSGT01030000234639.A.b.a.b.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.b	ENSGT01030000234639.A.b.a.b.a.a.a.a
Armadillo	MODERN SPECIES	799														ENSDNOG00000032788	DHCR7 (ENSDNOG00000046151) #21	NADSYN1 (ENSDNOG00000004407) #22	ENSDNOG00000035757	ENSDNOG00000038088	ENSDNOG00000035969	ENSDNOG00000036985	MRGPRE (ENSDNOG00000037542)	MRGPRG (ENSDNOG00000046364)
Elephant shark	MODERN SPECIES	1493	ENSCMIG00000016635	ano5b (ENSCMIG00000016698)	NELL1 (ENSCMIG00000016778)	slc6a5 (ENSCMIG00000016797)	ENSCMIG00000016799	prmt3 (ENSCMIG00000016807)	htatip2 (ENSCMIG00000016814)	dbx1a (ENSCMIG00000016817)	NAV2 (ENSCMIG00000016877)	E2F8 (ENSCMIG00000016976)	csrp3 (ENSCMIG00000016981)	ZDHHC13 (ENSCMIG00000017005)	ENSCMIG00000017024	ENSCMIG00000017052	dhcr7 (ENSCMIG00000017066) #21	nadsyn1 (ENSCMIG00000017096) #22	ENSCMIG00000017116 #23	CCND1 (ENSCMIG00000017119) #24	lto1 (ENSCMIG00000017122) #25	FGF19 (ENSCMIG00000017126) #26	fgf4 (ENSCMIG00000017135) #27	fgf3 (ENSCMIG00000017158) #28	ENSCMIG00000017168 #29	ano1a (ENSCMIG00000017298) #30	ENSCMIG00000017469 #31	PPFIA1 (ENSCMIG00000017484)	CTTN (ENSCMIG00000017527)	shank2b (ENSCMIG00000017626)	ENSCMIG00000017725	ENSCMIG00000017731	ENSCMIG00000017732
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000010152 #22
Hagfish	MODERN SPECIES	985	ENSEBUG00000003589	ENSEBUG00000010966	ENSEBUG00000009352	ENSEBUG00000016512	ENSEBUG00000011163	ENSEBUG00000016144	ENSEBUG00000015134	ENSEBUG00000008947	ENSEBUG00000008639	ENSEBUG00000008684	ENSEBUG00000012815	ENSEBUG00000000727	ENSEBUG00000010923	dhcr7 (ENSEBUG00000015137) #21	ENSEBUG00000007049	nadsyn1 (ENSEBUG00000003929) #22	ENSEBUG00000007788	ENSEBUG00000011395	ENSEBUG00000011132	ENSEBUG00000010529	ENSEBUG00000006589	ENSEBUG00000011555	ENSEBUG00000009309	ENSEBUG00000014640	ENSEBUG00000008352	krr1 (ENSEBUG00000006780)	ENSEBUG00000017009	ENSEBUG00000005408