Glires ANCESTRAL SPECIES 9 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.a Rodentia ANCESTRAL SPECIES 9 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.a Rodentia_A ANCESTRAL SPECIES 11 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000167452 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.a ENSGT00390000009819.a.b.a.a.b.a ENSGT00940000158215 ENSGT00950000182920.b.a.b.a.b Sciuridae ANCESTRAL SPECIES 6 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078.g ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT00940000154359.e ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.b.a.a.b.a ENSGT00940000158215 Marmotini ANCESTRAL SPECIES 1 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00960000189870 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000165099 #25 ENSGT00940000163078.g ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b #28 ENSGT01000000214430.a.b.f.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.a #29 ENSGT01000000214430.a.a.a.a.a.b.m.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.n.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b.n.b.b ##27 ENSGT01000000214430.a.b.f.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.m.a ##27 Marmotini_b ANCESTRAL SPECIES 2 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00960000189870 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000165099 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b #28 Arctic ground squirrel MODERN SPECIES 198 IZUMO3 (ENSUPAG00010017958) #21 ELAVL2 (ENSUPAG00010017838) #22 DMRTA1 (ENSUPAG00010017830) #23 CDKN2B (ENSUPAG00010017817) #24 ENSUPAG00010017810 #25 MTAP (ENSUPAG00010017804) #26 IFNE (ENSUPAG00010017802) #27 ENSUPAG00010017790 #28 ENSUPAG00010017776 #29 Squirrel MODERN SPECIES 427 ELAVL2 (ENSSTOG00000007792) #22 Alpin marmot MODERN SPECIES 30 RIGI (ENSMMMG00000008863) ACO1 (ENSMMMG00000008891) ENSMMMG00000008959 LINGO2 (ENSMMMG00000008968) ENSMMMG00000008980 C9orf72 (ENSMMMG00000008985) MOB3B (ENSMMMG00000009010) EQTN (ENSMMMG00000009014) TEK (ENSMMMG00000009044) IFT74 (ENSMMMG00000009198) LRRC19 (ENSMMMG00000009258) PLAA (ENSMMMG00000009283) CAAP1 (ENSMMMG00000009307) ENSMMMG00000009342 IZUMO3 (ENSMMMG00000009377) #21 ELAVL2 (ENSMMMG00000009415) #22 ENSMMMG00000009529 DMRTA1 (ENSMMMG00000009543) #23 ENSMMMG00000009596 ENSMMMG00000009612 MTAP (ENSMMMG00000009628) #26 ENSMMMG00000009642 IFNE (ENSMMMG00000009652) #27 ENSMMMG00000009657 #28 Eurasian red squirrel MODERN SPECIES 6 LINGO2 (ENSSVLG00005024258) C9orf72 (ENSSVLG00005024231) IFNK (ENSSVLG00005024213) ##27 MOB3B (ENSSVLG00005024202) ENSSVLG00005024176 ENSSVLG00005024155 TEK (ENSSVLG00005023870) LRRC19 (ENSSVLG00005023797) IFT74 (ENSSVLG00005023765) PLAA (ENSSVLG00005023742) ENSSVLG00005023720 ENSSVLG00005023705 ENSSVLG00005023697 TUSC1 (ENSSVLG00005023687) IZUMO3 (ENSSVLG00005023611) #21 ELAVL2 (ENSSVLG00005023496) #22 DMRTA1 (ENSSVLG00005023462) #23 CDKN2B (ENSSVLG00005023398) #24 CDKN2A (ENSSVLG00005023359) ENSSVLG00005023302 #26 ENSSVLG00005023288 #27 ENSSVLG00005023283 #28 ENSSVLG00005023273 #28 ENSSVLG00005023253 #28 ENSSVLG00005023243 ##27 ENSSVLG00005023234 #28 ENSSVLG00005023225 #28 ENSSVLG00005023217 ##27 ENSSVLG00005023193 #28 ENSSVLG00005023180 #28 ENSSVLG00005023171 ##27 Hystricomorpha ANCESTRAL SPECIES 7 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT01100000266946 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.a.a.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT01000000214430.a.a.a.a.b ##27 Naked mole-rat female MODERN SPECIES 3 ENSHGLG00000008527 ENSHGLG00000020201 ##27 MOB3B (ENSHGLG00000005405) TEK (ENSHGLG00000017418) ENSHGLG00000037234 IFT74 (ENSHGLG00000007564) ENSHGLG00000032796 LRRC19 (ENSHGLG00000040675) PLAA (ENSHGLG00000010977) ENSHGLG00000034551 ENSHGLG00000036016 TUSC1 (ENSHGLG00000039095) ENSHGLG00000020416 ENSHGLG00000001616 ENSHGLG00000047261 ELAVL2 (ENSHGLG00000005423) #22 DMRTA1 (ENSHGLG00000051021) #23 ENSHGLG00000040016 CDKN2B (ENSHGLG00000038311) #24 ENSHGLG00000034314 ENSHGLG00000008650 ENSHGLG00000020314 ENSHGLG00000006616 #26 ENSHGLG00000041847 ENSHGLG00000035491 ENSHGLG00000000210 ENSHGLG00000005602 ENSHGLG00000011793 ENSHGLG00000004959 ENSHGLG00000037708 ENSHGLG00000006210 Hystricomorpha_a ANCESTRAL SPECIES 5 ENSGT01020000230598 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.a.a.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT01000000214430.a.b ##27 Guinea pig MODERN SPECIES 2 ENSCPOG00000030241 ENSCPOG00000037353 H2BC18 (ENSCPOG00000030049) ENSCPOG00000033096 ENSCPOG00000040788 LINGO2 (ENSCPOG00000008899) C9orf72 (ENSCPOG00000009473) ENSCPOG00000000866 ##27 MOB3B (ENSCPOG00000009470) TEK (ENSCPOG00000009907) LRRC19 (ENSCPOG00000012981) IFT74 (ENSCPOG00000012980) PLAA (ENSCPOG00000012969) ENSCPOG00000032640 CAAP1 (ENSCPOG00000037143) ELAVL2 (ENSCPOG00000010472) #22 DMRTA1 (ENSCPOG00000036480) #23 CDKN2B (ENSCPOG00000001268) #24 CDKN2A (ENSCPOG00000023988) ENSCPOG00000000825 #26 ENSCPOG00000010375 ##27 ENSCPOG00000033588 #28 ENSCPOG00000010467 ##27 ENSCPOG00000027262 #28 ENSCPOG00000036041 #28 ENSCPOG00000039788 #28 ENSCPOG00000021662 #28 ENSCPOG00000040424 #28 ENSCPOG00000037617 #28 ENSCPOG00000031809 #28 ENSCPOG00000036367 #28 Hystricomorpha_b ANCESTRAL SPECIES 11 ENSGT00390000006684 ENSGT00390000007535 ENSGT01020000230598 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00390000017010 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.a.a.a.b #28 Long-tailed chinchilla MODERN SPECIES 179 TOPORS (ENSCLAG00000002292) RIGI (ENSCLAG00000002351) ACO1 (ENSCLAG00000002487) ENSCLAG00000002806 ENSCLAG00000001658 LINGO2 (ENSCLAG00000017459) C9orf72 (ENSCLAG00000001862) MOB3B (ENSCLAG00000001885) ENSCLAG00000001968 ENSCLAG00000001999 TEK (ENSCLAG00000002200) IFT74 (ENSCLAG00000002217) LRRC19 (ENSCLAG00000002476) PLAA (ENSCLAG00000002600) CAAP1 (ENSCLAG00000002895) ELAVL2 (ENSCLAG00000003388) #22 ENSCLAG00000004081 #23 CDKN2B (ENSCLAG00000004253) #24 CDKN2A (ENSCLAG00000001664) MTAP (ENSCLAG00000001731) #26 Degu MODERN SPECIES 140 ENSODEG00000002236 ENSODEG00000018803 LINGO2 (ENSODEG00000018786) C9orf72 (ENSODEG00000002381) MOB3B (ENSODEG00000002400) TEK (ENSODEG00000002511) IFT74 (ENSODEG00000003146) LRRC19 (ENSODEG00000003217) PLAA (ENSODEG00000003249) CAAP1 (ENSODEG00000002253) ENSODEG00000018769 ENSODEG00000002277 ENSODEG00000002352 ELAVL2 (ENSODEG00000002531) #22 DMRTA1 (ENSODEG00000003392) #23 ENSODEG00000003574 CDKN2B (ENSODEG00000003617) #24 ENSODEG00000003701 ENSODEG00000003787 #26 ENSODEG00000004039 #28 ENSODEG00000004090 #28 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.b.a.a.b.a Kangaroo rat MODERN SPECIES 372 Lingo2 (ENSDORG00000029438) C9orf72 (ENSDORG00000006734) Mob3b (ENSDORG00000010444) ENSDORG00000010654 Tek (ENSDORG00000010652) Lrrc19 (ENSDORG00000008965) Ift74 (ENSDORG00000008963) Plaa (ENSDORG00000002789) Caap1 (ENSDORG00000025530) Tusc1 (ENSDORG00000029686) ENSDORG00000005292 Izumo3 (ENSDORG00000027519) #21 Elavl2 (ENSDORG00000010437) #22 Dmrta1 (ENSDORG00000015411) #23 Cdkn2b (ENSDORG00000012076) #24 ENSDORG00000012075 Mtap (ENSDORG00000012074) #26 Klhl9 (ENSDORG00000028408) Hacd4 (ENSDORG00000006925) Focad (ENSDORG00000006921) ENSDORG00000028514 ENSDORG00000027266 Slc24a2 (ENSDORG00000015412) Acer2 (ENSDORG00000002403) ENSDORG00000012057 Dennd4c (ENSDORG00000012055) ENSDORG00000014197 Haus6 (ENSDORG00000026577) Myomorpha ANCESTRAL SPECIES 1 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.b.a.a.b.a Muroidea ANCESTRAL SPECIES 1 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.p.b #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.o #28 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a Muroidea_A ANCESTRAL SPECIES 3 ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT00900000143271 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.p.b #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.o #28 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a Cricetidae ANCESTRAL SPECIES 2 ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT00900000143271 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.o #28 ENSGT00940000154359.e ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.b.a.a.b.a ENSGT00940000158215 Cricetinae ANCESTRAL SPECIES 5 ENSGT00950000182879.b.a.a ENSGT00940000159251 ENSGT00900000143271 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B.gb #26 ENSGT00950000182991.B.fb #26 ENSGT01000000214430.a.a.b #27 Chinese hamster chok1gshd MODERN SPECIES 111 Hook1 (ENSCGRG00001001100) ENSCGRG00001008656 Fggy (ENSCGRG00001024005) Jun (ENSCGRG00001011810) Mysm1 (ENSCGRG00001015762) Eqtn (ENSCGRG00001001186) Tek (ENSCGRG00001018441) Ift74 (ENSCGRG00001020714) Lrrc19 (ENSCGRG00001023151) Plaa (ENSCGRG00001024275) ENSCGRG00001008077 Caap1 (ENSCGRG00001016530) Tusc1 (ENSCGRG00001012163) ENSCGRG00001019319 Izumo3 (ENSCGRG00001023060) #21 Elavl2 (ENSCGRG00001024409) #22 ENSCGRG00001012785 ENSCGRG00001013517 Dmrta1 (ENSCGRG00001014289) #23 Cdkn2b (ENSCGRG00001014610) #24 ENSCGRG00001016483 ENSCGRG00001019783 ENSCGRG00001020377 #26 Ifne (ENSCGRG00001006683) #27 ENSCGRG00001005639 #28 ENSCGRG00001007528 #28 ENSCGRG00001005821 #28 ENSCGRG00001006253 ##27 ENSCGRG00001009477 #28 ENSCGRG00001009627 #28 ENSCGRG00001005704 #28 Golden Hamster MODERN SPECIES 662 ENSMAUG00000021213 ENSMAUG00000008711 Hook1 (ENSMAUG00000017707) Fggy (ENSMAUG00000019211) Jun (ENSMAUG00000007038) ENSMAUG00000014400 Mysm1 (ENSMAUG00000014841) Eqtn (ENSMAUG00000015891) Tek (ENSMAUG00000018555) ENSMAUG00000006577 Ift74 (ENSMAUG00000001215) Plaa (ENSMAUG00000013719) ENSMAUG00000014308 Tusc1 (ENSMAUG00000020941) Izumo3 (ENSMAUG00000014991) #21 Elavl2 (ENSMAUG00000011955) #22 Dmrta1 (ENSMAUG00000004332) #23 Cdkn2b (ENSMAUG00000019635) #24 Cdkn2a (ENSMAUG00000003307) Mtap (ENSMAUG00000010309) #26 ENSMAUG00000004733 #28 Hacd4 (ENSMAUG00000000488) Focad (ENSMAUG00000012306) Mllt3 (ENSMAUG00000021318) Slc24a2 (ENSMAUG00000016398) Acer2 (ENSMAUG00000020667) ENSMAUG00000016545 Dennd4c (ENSMAUG00000002052) ENSMAUG00000020314 Rraga (ENSMAUG00000003702) Saxo1 (ENSMAUG00000004358) Cricetidae_B ANCESTRAL SPECIES 2 ENSGT00950000182879.b.a.b.b ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT00900000143271 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.o #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b ENSGT00390000009819.a.b.a.a.b.a ENSGT00940000158215 ENSGT00950000182920.b.a.b.a.b ENSGT00390000008250 Prairie vole MODERN SPECIES 1 Hook1 (ENSMOCG00000020291) ENSMOCG00000016214 Fggy (ENSMOCG00000017533) Jun (ENSMOCG00000006483) Mysm1 (ENSMOCG00000001327) Eqtn (ENSMOCG00000018858) Tek (ENSMOCG00000017310) Lrrc19 (ENSMOCG00000008422) Ift74 (ENSMOCG00000002321) Plaa (ENSMOCG00000017762) Caap1 (ENSMOCG00000012535) ENSMOCG00000003689 Tusc1 (ENSMOCG00000019464) Izumo3 (ENSMOCG00000019669) #21 ENSMOCG00000018411 Elavl2 (ENSMOCG00000016960) #22 ENSMOCG00000004079 Dmrta1 (ENSMOCG00000002337) #23 Cdkn2b (ENSMOCG00000015669) #24 ENSMOCG00000013892 Mtap (ENSMOCG00000012400) #26 ENSMOCG00000003644 #28 ENSMOCG00000004406 #28 ENSMOCG00000003427 #28 ENSMOCG00000004176 #28 Klhl9 (ENSMOCG00000003966) ENSMOCG00000022936 #28 ENSMOCG00000002912 #28 ENSMOCG00000003333 #28 ENSMOCG00000003596 #28 ENSMOCG00000007135 #28 Northern American deer mouse MODERN SPECIES 11 Hook1 (ENSPEMG00000003851) ENSPEMG00000026283 Fggy (ENSPEMG00000007085) Jun (ENSPEMG00000014041) ENSPEMG00000012194 Mysm1 (ENSPEMG00000011781) Eqtn (ENSPEMG00000016567) Tek (ENSPEMG00000000588) Lrrc19 (ENSPEMG00000017681) Ift74 (ENSPEMG00000017074) Plaa (ENSPEMG00000009992) Caap1 (ENSPEMG00000000545) Izumo3 (ENSPEMG00000019058) #21 ENSPEMG00000031412 ENSPEMG00000013102 Elavl2 (ENSPEMG00000014101) #22 Dmrta1 (ENSPEMG00000008771) #23 Cdkn2b (ENSPEMG00000025789) #24 ENSPEMG00000028835 ENSPEMG00000010842 ENSPEMG00000029915 ENSPEMG00000007998 #26 Ifne (ENSPEMG00000029831) #27 ENSPEMG00000026834 #28 ENSPEMG00000024899 #28 ENSPEMG00000027847 #28 ENSPEMG00000027437 #28 ENSPEMG00000030301 #28 Klhl9 (ENSPEMG00000013714) ENSPEMG00000024802 #28 ENSPEMG00000030502 #28 Murinae ANCESTRAL SPECIES 2 ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT00900000143271 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.p.a.b #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.p.b #28 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b Mus ANCESTRAL SPECIES 3 ENSGT00950000182879.b.a.b.b.c ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b Mus_A ANCESTRAL SPECIES 3 ENSGT00950000182879.b.a.b.b.c ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT00860000135766 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a Mus_B ANCESTRAL SPECIES 5 ENSGT00950000182879.b.a.b.b.c ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000164376.c ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT00860000135766 ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #28 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a #28 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b Mouse MODERN SPECIES 13 Cyp2j12 (ENSMUSG00000081225) Cyp2j13 (ENSMUSG00000028571) Hook1 (ENSMUSG00000028572) Fggy (ENSMUSG00000028573) Jun (ENSMUSG00000052684) Mysm1 (ENSMUSG00000062627) Eqtn (ENSMUSG00000028575) Tek (ENSMUSG00000006386) Lrrc19 (ENSMUSG00000049799) Ift74 (ENSMUSG00000028576) Plaa (ENSMUSG00000028577) Caap1 (ENSMUSG00000028578) Tusc1 (ENSMUSG00000054000) Gm12666 (ENSMUSG00000066107) Izumo3 (ENSMUSG00000028533) #21 Elavl2 (ENSMUSG00000008489) #22 Zfp352 (ENSMUSG00000070902) Dmrta1 (ENSMUSG00000043753) #23 Cdkn2b (ENSMUSG00000073802) #24 Cdkn2a (ENSMUSG00000044303) Mtap (ENSMUSG00000062937) #26 Ifne (ENSMUSG00000045364) #27 Ifna1 (ENSMUSG00000095498) #28 Ifna4 (ENSMUSG00000070904) #28 Ifna5 (ENSMUSG00000096682) #28 Ifna6 (ENSMUSG00000101252) #28 Ifna11 (ENSMUSG00000100549) #28 Ifna7 (ENSMUSG00000100713) #28 Gm13288 (ENSMUSG00000070908) ##27 Gm13287 (ENSMUSG00000094648) ##27 Gm13285 (ENSMUSG00000095101) ##27 Mus_C ANCESTRAL SPECIES 2 ENSGT00950000182879.b.a.b.b.c ENSGT00940000155417.a.b ENSGT00940000159251 ENSGT01000000214434.F ENSGT00940000162061 ENSGT00940000157721 ENSGT00390000010786 ENSGT00940000158840 ENSGT00940000161278 ENSGT00390000007109 ENSGT00550000074944 ENSGT00860000136187 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000164376.c ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b #27 ENSGT00860000135766 ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #28 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b ENSGT00390000004438 ENSGT00940000155903 ENSGT01030000234532.B.e.a ENSGT00730000110920.b.a.b spretus MODERN SPECIES 13 Cyp2j13 (MGP_SPRETEiJ_G0027139) Hook1 (MGP_SPRETEiJ_G0027138) Fggy (MGP_SPRETEiJ_G0027137) Jun (MGP_SPRETEiJ_G0027136) Mysm1 (MGP_SPRETEiJ_G0027135) Eqtn (MGP_SPRETEiJ_G0027134) Tek (MGP_SPRETEiJ_G0027133) MGP_SPRETEiJ_G0027132 Lrrc19 (MGP_SPRETEiJ_G0027131) Ift74 (MGP_SPRETEiJ_G0027130) Plaa (MGP_SPRETEiJ_G0027129) MGP_SPRETEiJ_G0027128 Caap1 (MGP_SPRETEiJ_G0027127) Tusc1 (MGP_SPRETEiJ_G0027126) Izumo3 (MGP_SPRETEiJ_G0027125) #21 Elavl2 (MGP_SPRETEiJ_G0027124) #22 Zfp352 (MGP_SPRETEiJ_G0027123) Dmrta1 (MGP_SPRETEiJ_G0027122) #23 Cdkn2b (MGP_SPRETEiJ_G0027121) #24 Cdkn2a (MGP_SPRETEiJ_G0027120) Mtap (MGP_SPRETEiJ_G0027119) #26 Ifne (MGP_SPRETEiJ_G0027118) #27 MGP_SPRETEiJ_G0027117 MGP_SPRETEiJ_G0027116 #28 MGP_SPRETEiJ_G0027115 #28 MGP_SPRETEiJ_G0027114 Klhl9 (MGP_SPRETEiJ_G0027113) MGP_SPRETEiJ_G0027112 #28 MGP_SPRETEiJ_G0027111 #28 MGP_SPRETEiJ_G0027110 #28 MGP_SPRETEiJ_G0027109 #28 Steppe mouse MODERN SPECIES 3181 Elavl2 (ENSMSIG00000016130) #22 Zfp352 (ENSMSIG00000016079) ENSMSIG00000016078 Dmrta1 (ENSMSIG00000016072) #23 ENSMSIG00000016052 #24 Cdkn2a (ENSMSIG00000016031) Mtap (ENSMSIG00000016003) #26 Ifne (ENSMSIG00000015993) #27 Ifna5 (ENSMSIG00000015987) #28 Ifna4 (ENSMSIG00000015985) #28 Ryukyu mouse MODERN SPECIES 13 Cyp2j12 (MGP_CAROLIEiJ_G0026174) Cyp2j13 (MGP_CAROLIEiJ_G0026173) Hook1 (MGP_CAROLIEiJ_G0026172) Fggy (MGP_CAROLIEiJ_G0026171) Jun (MGP_CAROLIEiJ_G0026170) Mysm1 (MGP_CAROLIEiJ_G0026169) Eqtn (MGP_CAROLIEiJ_G0026168) Tek (MGP_CAROLIEiJ_G0026167) Lrrc19 (MGP_CAROLIEiJ_G0026166) MGP_CAROLIEiJ_G0026165 Plaa (MGP_CAROLIEiJ_G0026164) MGP_CAROLIEiJ_G0026163 Caap1 (MGP_CAROLIEiJ_G0026162) Tusc1 (MGP_CAROLIEiJ_G0026161) Izumo3 (MGP_CAROLIEiJ_G0026160) #21 Elavl2 (MGP_CAROLIEiJ_G0026159) #22 Dmrta1 (MGP_CAROLIEiJ_G0026158) #23 Cdkn2b (MGP_CAROLIEiJ_G0026157) #24 Cdkn2a (MGP_CAROLIEiJ_G0026156) Mtap (MGP_CAROLIEiJ_G0026155) #26 Ifne (MGP_CAROLIEiJ_G0026154) #27 MGP_CAROLIEiJ_G0026153 MGP_CAROLIEiJ_G0026152 #28 MGP_CAROLIEiJ_G0026151 Klhl9 (MGP_CAROLIEiJ_G0026150) MGP_CAROLIEiJ_G0026149 #28 MGP_CAROLIEiJ_G0026148 #28 MGP_CAROLIEiJ_G0026147 #28 MGP_CAROLIEiJ_G0026146 #28 Pramel32 (MGP_CAROLIEiJ_G0026145) MGP_CAROLIEiJ_G0026144 #28 Shrew mouse MODERN SPECIES 19 Cyp2j12 (MGP_PahariEiJ_G0028511) Cyp2j13 (MGP_PahariEiJ_G0028510) Hook1 (MGP_PahariEiJ_G0028509) Fggy (MGP_PahariEiJ_G0028508) Jun (MGP_PahariEiJ_G0028507) Mysm1 (MGP_PahariEiJ_G0028506) MGP_PahariEiJ_G0028505 Tek (MGP_PahariEiJ_G0028504) Lrrc19 (MGP_PahariEiJ_G0028503) Ift74 (MGP_PahariEiJ_G0028502) Plaa (MGP_PahariEiJ_G0028501) MGP_PahariEiJ_G0028500 Caap1 (MGP_PahariEiJ_G0028499) Tusc1 (MGP_PahariEiJ_G0028498) Izumo3 (MGP_PahariEiJ_G0028497) #21 Elavl2 (MGP_PahariEiJ_G0028496) #22 Dmrta1 (MGP_PahariEiJ_G0028495) #23 Cdkn2b (MGP_PahariEiJ_G0028494) #24 Cdkn2a (MGP_PahariEiJ_G0028493) Mtap (MGP_PahariEiJ_G0028492) #26 Ifne (MGP_PahariEiJ_G0028491) #27 MGP_PahariEiJ_G0028490 MGP_PahariEiJ_G0028488 #28 MGP_PahariEiJ_G0028489 #28 MGP_PahariEiJ_G0028487 #28 MGP_PahariEiJ_G0028486 Klhl9 (MGP_PahariEiJ_G0028485) MGP_PahariEiJ_G0028483 #28 MGP_PahariEiJ_G0028484 #28 MGP_PahariEiJ_G0028482 #28 MGP_PahariEiJ_G0028481 #28 Rat MODERN SPECIES 15 Hook1 (ENSRNOG00000026226) AABR07049299.1 (ENSRNOG00000026234) Fggy (ENSRNOG00000008907) Jun (ENSRNOG00000026293) Mysm1 (ENSRNOG00000026299) Eqtn (ENSRNOG00000026323) Tek (ENSRNOG00000008587) Lrrc19 (ENSRNOG00000022225) Ift74 (ENSRNOG00000008075) Plaa (ENSRNOG00000007753) Caap1 (ENSRNOG00000007299) Tusc1 (ENSRNOG00000066328) AABR07049228.1 (ENSRNOG00000056007) AABR07049223.1 (ENSRNOG00000032516) Izumo3 (ENSRNOG00000022488) #21 Elavl2 (ENSRNOG00000006853) #22 Zfp353 (ENSRNOG00000050804) Zfp352 (ENSRNOG00000033600) Dmrta1 (ENSRNOG00000024093) #23 Cdkn2b (ENSRNOG00000006735) #24 Cdkn2a (ENSRNOG00000059837) #25 ENSRNOG00000070364 Mtap (ENSRNOG00000006615) #26 LOC100362345 (ENSRNOG00000024197) Ifne (ENSRNOG00000024204) #27 LOC100911527 (ENSRNOG00000065328) #28 LOC120103164 (ENSRNOG00000070321) #28 LOC120103163 (ENSRNOG00000066857) #28 RGD1560539 (ENSRNOG00000066962) #28 LOC120103162 (ENSRNOG00000065583) #28 LOC120103161 (ENSRNOG00000063625) #28 Upper Galilee mountains blind mole rat MODERN SPECIES 628 C9orf72 (ENSNGAG00000023767) Mob3b (ENSNGAG00000023396) Eqtn (ENSNGAG00000023403) Tek (ENSNGAG00000019538) Lrrc19 (ENSNGAG00000004826) Ift74 (ENSNGAG00000005078) Plaa (ENSNGAG00000022466) ENSNGAG00000021141 Caap1 (ENSNGAG00000022127) Tusc1 (ENSNGAG00000001051) Izumo3 (ENSNGAG00000013642) #21 ENSNGAG00000022004 Elavl2 (ENSNGAG00000014535) #22 ENSNGAG00000021866 Dmrta1 (ENSNGAG00000023922) #23 Cdkn2b (ENSNGAG00000012585) #24 ENSNGAG00000022636 ENSNGAG00000015985 #26 Klhl9 (ENSNGAG00000012889) Lesser Egyptian jerboa MODERN SPECIES 66 Aco1 (ENSJJAG00000013824) ENSJJAG00000008353 ENSJJAG00000022023 Lingo2 (ENSJJAG00000010453) C9orf72 (ENSJJAG00000008608) Mob3b (ENSJJAG00000000886) ENSJJAG00000020051 Tek (ENSJJAG00000019197) Ift74 (ENSJJAG00000017963) Lrrc19 (ENSJJAG00000022557) Plaa (ENSJJAG00000013453) Caap1 (ENSJJAG00000012208) ENSJJAG00000019508 ENSJJAG00000011332 Izumo3 (ENSJJAG00000017341) #21 Elavl2 (ENSJJAG00000008247) #22 ENSJJAG00000021773 Dmrta1 (ENSJJAG00000015837) #23 ENSJJAG00000009725 ENSJJAG00000009128 Cdkn2b (ENSJJAG00000021247) #24 ENSJJAG00000017320 ENSJJAG00000010173 #26 Klhl9 (ENSJJAG00000007691) ENSJJAG00000024178 Hacd4 (ENSJJAG00000024303) Focad (ENSJJAG00000024309) Mllt3 (ENSJJAG00000012196) ENSJJAG00000018542 Slc24a2 (ENSJJAG00000020852) Acer2 (ENSJJAG00000020889) Lagomorpha ANCESTRAL SPECIES 23 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 ENSGT00940000158840 ENSGT00390000007109 ENSGT00940000161278 ENSGT00550000074944 ENSGT00390000017010 ENSGT00390000013920 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 ENSGT00950000182991.B #26 Rabbit MODERN SPECIES ENSOCUG00000021090 ENSOCUG00000036968 TEK (ENSOCUG00000017666) IFT74 (ENSOCUG00000001320) LRRC19 (ENSOCUG00000029228) PLAA (ENSOCUG00000015471) CAAP1 (ENSOCUG00000015461) ENSOCUG00000023508 ENSOCUG00000003706 ENSOCUG00000033820 ENSOCUG00000027058 ENSOCUG00000015387 TUSC1 (ENSOCUG00000017580) IZUMO3 (ENSOCUG00000022724) #21 ENSOCUG00000030421 ELAVL2 (ENSOCUG00000005891) #22 DMRTA1 (ENSOCUG00000006069) #23 ENSOCUG00000021134 CDKN2B (ENSOCUG00000012306) #24 ENSOCUG00000027972 ENSOCUG00000012289 #26 ENSOCUG00000031845 ENSOCUG00000030275 ENSOCUG00000038006 IFNE (ENSOCUG00000015672) #27 ENSOCUG00000021343 ##27 ENSOCUG00000015666 #28 ENSOCUG00000036321 ##27 ENSOCUG00000028068 ##27 ENSOCUG00000021714 ##27 ENSOCUG00000027561 #28 Pika MODERN SPECIES 10666 ELAVL2 (ENSOPRG00000012874) #22