Mus	ANCESTRAL SPECIES	3	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187 #18	ENSGT00390000017010 #19	ENSGT00390000013920 #20	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000160640 #23	ENSGT00940000162423 #24	ENSGT00940000168083 #25	ENSGT00950000182991.B #26	ENSGT01000000214430.a.a.b #27	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b #32	ENSGT00940000154359.e #31	ENSGT01000000214430.a.a.a.a.b ##27	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ##27	ENSGT01000000214430.a.b ##27	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT01030000234532.B.e.a	ENSGT00730000110920.b.a.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187 #18	ENSGT00390000017010 #19	ENSGT00390000013920 #20	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000160640 #23	ENSGT00940000162423 #24	ENSGT00940000168083 #25	ENSGT00950000182991.B #26	ENSGT01000000214430.a.a.b #27	ENSGT00860000135766 #28	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a #32	ENSGT00940000154359.e #31	ENSGT01000000214430.a.a.a.a.b ##27	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ##27	ENSGT01000000214430.a.b ##27	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT01030000234532.B.e.a
Ryukyu mouse	MODERN SPECIES	13	Cyp2j12 (MGP_CAROLIEiJ_G0026174) #7	Cyp2j13 (MGP_CAROLIEiJ_G0026173) #8	Hook1 (MGP_CAROLIEiJ_G0026172) #9	Fggy (MGP_CAROLIEiJ_G0026171) #10	Jun (MGP_CAROLIEiJ_G0026170) #11	Mysm1 (MGP_CAROLIEiJ_G0026169) #12	Eqtn (MGP_CAROLIEiJ_G0026168) #13	Tek (MGP_CAROLIEiJ_G0026167) #14	Lrrc19 (MGP_CAROLIEiJ_G0026166) #15	MGP_CAROLIEiJ_G0026165 #16	Plaa (MGP_CAROLIEiJ_G0026164) #17	MGP_CAROLIEiJ_G0026163 #18	Caap1 (MGP_CAROLIEiJ_G0026162) #19	Tusc1 (MGP_CAROLIEiJ_G0026161) #20	Izumo3 (MGP_CAROLIEiJ_G0026160) #21	Elavl2 (MGP_CAROLIEiJ_G0026159) #22	Dmrta1 (MGP_CAROLIEiJ_G0026158) #23	Cdkn2b (MGP_CAROLIEiJ_G0026157) #24	Cdkn2a (MGP_CAROLIEiJ_G0026156) #25	Mtap (MGP_CAROLIEiJ_G0026155) #26	Ifne (MGP_CAROLIEiJ_G0026154) #27	MGP_CAROLIEiJ_G0026153 #28	MGP_CAROLIEiJ_G0026152 #29	MGP_CAROLIEiJ_G0026151 #30	Klhl9 (MGP_CAROLIEiJ_G0026150) #31	MGP_CAROLIEiJ_G0026149 #32	MGP_CAROLIEiJ_G0026148 #33	MGP_CAROLIEiJ_G0026147 #34	MGP_CAROLIEiJ_G0026146 #35	Pramel32 (MGP_CAROLIEiJ_G0026145) #36	MGP_CAROLIEiJ_G0026144 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187 #18	ENSGT00390000017010 #19	ENSGT00390000013920 #20	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000164376.c	ENSGT00940000160640 #23	ENSGT00940000162423 #24	ENSGT00940000168083 #25	ENSGT00950000182991.B #26	ENSGT01000000214430.a.a.b #27	ENSGT00860000135766 #28	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b #36	ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #35	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a #32	ENSGT00940000154359.e #31	ENSGT01000000214430.a.a.a.a.b ##27	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ##27	ENSGT01000000214430.a.b ##27	ENSGT00530000062962.b.b
Mouse	MODERN SPECIES	13	Cyp2j12 (ENSMUSG00000081225) #7	Cyp2j13 (ENSMUSG00000028571) #8	Hook1 (ENSMUSG00000028572) #9	Fggy (ENSMUSG00000028573) #10	Jun (ENSMUSG00000052684) #11	Mysm1 (ENSMUSG00000062627) #12	Eqtn (ENSMUSG00000028575) #13	Tek (ENSMUSG00000006386) #14	Lrrc19 (ENSMUSG00000049799) #15	Ift74 (ENSMUSG00000028576) #16	Plaa (ENSMUSG00000028577) #17	Caap1 (ENSMUSG00000028578) #19	Tusc1 (ENSMUSG00000054000) #20	Gm12666 (ENSMUSG00000066107)	Izumo3 (ENSMUSG00000028533) #21	Elavl2 (ENSMUSG00000008489) #22	Zfp352 (ENSMUSG00000070902)	Dmrta1 (ENSMUSG00000043753) #23	Cdkn2b (ENSMUSG00000073802) #24	Cdkn2a (ENSMUSG00000044303) #25	Mtap (ENSMUSG00000062937) #26	Ifne (ENSMUSG00000045364) #27	Ifna1 (ENSMUSG00000095498) ##27	Ifna4 (ENSMUSG00000070904) ##27	Ifna5 (ENSMUSG00000096682) ##27	Ifna6 (ENSMUSG00000101252) #35	Ifna11 (ENSMUSG00000100549) ##27	Ifna7 (ENSMUSG00000100713) ##27	Gm13288 (ENSMUSG00000070908) ##27	Gm13287 (ENSMUSG00000094648) ##27	Gm13285 (ENSMUSG00000095101) ##27
Mus_C	ANCESTRAL SPECIES	2	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187 #18	ENSGT00390000017010 #19	ENSGT00390000013920 #20	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000164376.c	ENSGT00940000160640 #23	ENSGT00940000162423 #24	ENSGT00940000168083 #25	ENSGT00950000182991.B #26	ENSGT01000000214430.a.a.b #27	ENSGT00860000135766 #28	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b #36	ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #35	ENSGT01000000214430.a.b ##27	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT01030000234532.B.e.a	ENSGT00730000110920.b.a.b
spretus	MODERN SPECIES	13	Cyp2j13 (MGP_SPRETEiJ_G0027139) #8	Hook1 (MGP_SPRETEiJ_G0027138) #9	Fggy (MGP_SPRETEiJ_G0027137) #10	Jun (MGP_SPRETEiJ_G0027136) #11	Mysm1 (MGP_SPRETEiJ_G0027135) #12	Eqtn (MGP_SPRETEiJ_G0027134) #13	Tek (MGP_SPRETEiJ_G0027133) #14	MGP_SPRETEiJ_G0027132	Lrrc19 (MGP_SPRETEiJ_G0027131) #15	Ift74 (MGP_SPRETEiJ_G0027130) #16	Plaa (MGP_SPRETEiJ_G0027129) #17	MGP_SPRETEiJ_G0027128 #18	Caap1 (MGP_SPRETEiJ_G0027127) #19	Tusc1 (MGP_SPRETEiJ_G0027126) #20	Izumo3 (MGP_SPRETEiJ_G0027125) #21	Elavl2 (MGP_SPRETEiJ_G0027124) #22	Zfp352 (MGP_SPRETEiJ_G0027123)	Dmrta1 (MGP_SPRETEiJ_G0027122) #23	Cdkn2b (MGP_SPRETEiJ_G0027121) #24	Cdkn2a (MGP_SPRETEiJ_G0027120) #25	Mtap (MGP_SPRETEiJ_G0027119) #26	Ifne (MGP_SPRETEiJ_G0027118) #27	MGP_SPRETEiJ_G0027117 #28	MGP_SPRETEiJ_G0027116 ##27	MGP_SPRETEiJ_G0027115 ##27	MGP_SPRETEiJ_G0027114 #30	Klhl9 (MGP_SPRETEiJ_G0027113) #31	MGP_SPRETEiJ_G0027112 #32	MGP_SPRETEiJ_G0027111 #32	MGP_SPRETEiJ_G0027110 ##27	MGP_SPRETEiJ_G0027109 #35
Steppe mouse	MODERN SPECIES	3181																Elavl2 (ENSMSIG00000016130) #22	Zfp352 (ENSMSIG00000016079)	ENSMSIG00000016078	Dmrta1 (ENSMSIG00000016072) #23	ENSMSIG00000016052 #24	Cdkn2a (ENSMSIG00000016031) #25	Mtap (ENSMSIG00000016003) #26	Ifne (ENSMSIG00000015993) #27	Ifna5 (ENSMSIG00000015987) ##27	Ifna4 (ENSMSIG00000015985) ##27
Shrew mouse	MODERN SPECIES	19	Cyp2j12 (MGP_PahariEiJ_G0028511) #7	Cyp2j13 (MGP_PahariEiJ_G0028510) #8	Hook1 (MGP_PahariEiJ_G0028509) #9	Fggy (MGP_PahariEiJ_G0028508) #10	Jun (MGP_PahariEiJ_G0028507) #11	Mysm1 (MGP_PahariEiJ_G0028506) #12	MGP_PahariEiJ_G0028505 #13	Tek (MGP_PahariEiJ_G0028504) #14	Lrrc19 (MGP_PahariEiJ_G0028503) #15	Ift74 (MGP_PahariEiJ_G0028502) #16	Plaa (MGP_PahariEiJ_G0028501) #17	MGP_PahariEiJ_G0028500 #18	Caap1 (MGP_PahariEiJ_G0028499) #19	Tusc1 (MGP_PahariEiJ_G0028498) #20	Izumo3 (MGP_PahariEiJ_G0028497) #21	Elavl2 (MGP_PahariEiJ_G0028496) #22	Dmrta1 (MGP_PahariEiJ_G0028495) #23	Cdkn2b (MGP_PahariEiJ_G0028494) #24	Cdkn2a (MGP_PahariEiJ_G0028493) #25	Mtap (MGP_PahariEiJ_G0028492) #26	Ifne (MGP_PahariEiJ_G0028491) #27	MGP_PahariEiJ_G0028490 #28	MGP_PahariEiJ_G0028488 #32	MGP_PahariEiJ_G0028489 #32	MGP_PahariEiJ_G0028487 #32	MGP_PahariEiJ_G0028486 #30	Klhl9 (MGP_PahariEiJ_G0028485) #31	MGP_PahariEiJ_G0028483 ##27	MGP_PahariEiJ_G0028484 ##27	MGP_PahariEiJ_G0028482 #32	MGP_PahariEiJ_G0028481 #32