Mus	ANCESTRAL SPECIES	3	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187	ENSGT00390000017010 #18	ENSGT00390000013920 #19	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000160640 #24	ENSGT00940000162423 #25	ENSGT00940000168083 #26	ENSGT00950000182991.B #27	ENSGT01000000214430.a.a.b #28	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b #29	ENSGT00940000154359.e	ENSGT01000000214430.a.a.a.a.b #35	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #34	ENSGT01000000214430.a.b ##28	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT01030000234532.B.e.a	ENSGT00730000110920.b.a.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187	ENSGT00390000017010 #18	ENSGT00390000013920 #19	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000160640 #24	ENSGT00940000162423 #25	ENSGT00940000168083 #26	ENSGT00950000182991.B #27	ENSGT01000000214430.a.a.b #28	ENSGT00860000135766	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a ##28	ENSGT00940000154359.e	ENSGT01000000214430.a.a.a.a.b #35	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #34	ENSGT01000000214430.a.b ##28	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT01030000234532.B.e.a
Mus_B	ANCESTRAL SPECIES	5	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187	ENSGT00390000017010 #18	ENSGT00390000013920 #19	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000164376.c #23	ENSGT00940000160640 #24	ENSGT00940000162423 #25	ENSGT00940000168083 #26	ENSGT00950000182991.B #27	ENSGT01000000214430.a.a.b #28	ENSGT00860000135766	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #32	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a ##28	ENSGT00940000154359.e	ENSGT01000000214430.a.a.a.a.b #35	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #34	ENSGT01000000214430.a.b ##28	ENSGT00530000062962.b.b
Mouse	MODERN SPECIES	13	Cyp2j12 (ENSMUSG00000081225) #7	Cyp2j13 (ENSMUSG00000028571) #8	Hook1 (ENSMUSG00000028572) #9	Fggy (ENSMUSG00000028573) #10	Jun (ENSMUSG00000052684) #11	Mysm1 (ENSMUSG00000062627) #12	Eqtn (ENSMUSG00000028575) #13	Tek (ENSMUSG00000006386) #14	Lrrc19 (ENSMUSG00000049799) #15	Ift74 (ENSMUSG00000028576) #16	Plaa (ENSMUSG00000028577) #17	Caap1 (ENSMUSG00000028578) #18	Tusc1 (ENSMUSG00000054000) #19	Gm12666 (ENSMUSG00000066107) #20	Izumo3 (ENSMUSG00000028533) #21	Elavl2 (ENSMUSG00000008489) #22	Zfp352 (ENSMUSG00000070902) #23	Dmrta1 (ENSMUSG00000043753) #24	Cdkn2b (ENSMUSG00000073802) #25	Cdkn2a (ENSMUSG00000044303) #26	Mtap (ENSMUSG00000062937) #27	Ifne (ENSMUSG00000045364) #28	Ifna1 (ENSMUSG00000095498) #29	Ifna4 (ENSMUSG00000070904) #30	Ifna5 (ENSMUSG00000096682) #31	Ifna6 (ENSMUSG00000101252) #32	Ifna11 (ENSMUSG00000100549) #33	Ifna7 (ENSMUSG00000100713) #34	Gm13288 (ENSMUSG00000070908) #35	Gm13287 (ENSMUSG00000094648) #36	Gm13285 (ENSMUSG00000095101) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00950000182879.b.a.b.b.c #7	ENSGT00940000155417.a.b #8	ENSGT00940000159251 #9	ENSGT01000000214434.F #10	ENSGT00940000162061 #11	ENSGT00940000157721 #12	ENSGT00390000010786 #13	ENSGT00940000158840 #14	ENSGT00940000161278 #15	ENSGT00390000007109 #16	ENSGT00550000074944 #17	ENSGT00860000136187	ENSGT00390000017010 #18	ENSGT00390000013920 #19	ENSGT00390000017601 #21	ENSGT00940000156823.e #22	ENSGT00940000164376.c #23	ENSGT00940000160640 #24	ENSGT00940000162423 #25	ENSGT00940000168083 #26	ENSGT00950000182991.B #27	ENSGT01000000214430.a.a.b #28	ENSGT00860000135766	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #32	ENSGT01000000214430.a.b ##28	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT01030000234532.B.e.a	ENSGT00730000110920.b.a.b
spretus	MODERN SPECIES	13	Cyp2j13 (MGP_SPRETEiJ_G0027139) #8	Hook1 (MGP_SPRETEiJ_G0027138) #9	Fggy (MGP_SPRETEiJ_G0027137) #10	Jun (MGP_SPRETEiJ_G0027136) #11	Mysm1 (MGP_SPRETEiJ_G0027135) #12	Eqtn (MGP_SPRETEiJ_G0027134) #13	Tek (MGP_SPRETEiJ_G0027133) #14	MGP_SPRETEiJ_G0027132	Lrrc19 (MGP_SPRETEiJ_G0027131) #15	Ift74 (MGP_SPRETEiJ_G0027130) #16	Plaa (MGP_SPRETEiJ_G0027129) #17	MGP_SPRETEiJ_G0027128	Caap1 (MGP_SPRETEiJ_G0027127) #18	Tusc1 (MGP_SPRETEiJ_G0027126) #19	Izumo3 (MGP_SPRETEiJ_G0027125) #21	Elavl2 (MGP_SPRETEiJ_G0027124) #22	Zfp352 (MGP_SPRETEiJ_G0027123) #23	Dmrta1 (MGP_SPRETEiJ_G0027122) #24	Cdkn2b (MGP_SPRETEiJ_G0027121) #25	Cdkn2a (MGP_SPRETEiJ_G0027120) #26	Mtap (MGP_SPRETEiJ_G0027119) #27	Ifne (MGP_SPRETEiJ_G0027118) #28	MGP_SPRETEiJ_G0027117	MGP_SPRETEiJ_G0027116 #30	MGP_SPRETEiJ_G0027115 #30	MGP_SPRETEiJ_G0027114	Klhl9 (MGP_SPRETEiJ_G0027113)	MGP_SPRETEiJ_G0027112 ##28	MGP_SPRETEiJ_G0027111 ##28	MGP_SPRETEiJ_G0027110 ##28	MGP_SPRETEiJ_G0027109 #32
Steppe mouse	MODERN SPECIES	3181																Elavl2 (ENSMSIG00000016130) #22	Zfp352 (ENSMSIG00000016079) #23	ENSMSIG00000016078	Dmrta1 (ENSMSIG00000016072) #24	ENSMSIG00000016052 #25	Cdkn2a (ENSMSIG00000016031) #26	Mtap (ENSMSIG00000016003) #27	Ifne (ENSMSIG00000015993) #28	Ifna5 (ENSMSIG00000015987) #31	Ifna4 (ENSMSIG00000015985) #30
Ryukyu mouse	MODERN SPECIES	13	Cyp2j12 (MGP_CAROLIEiJ_G0026174) #7	Cyp2j13 (MGP_CAROLIEiJ_G0026173) #8	Hook1 (MGP_CAROLIEiJ_G0026172) #9	Fggy (MGP_CAROLIEiJ_G0026171) #10	Jun (MGP_CAROLIEiJ_G0026170) #11	Mysm1 (MGP_CAROLIEiJ_G0026169) #12	Eqtn (MGP_CAROLIEiJ_G0026168) #13	Tek (MGP_CAROLIEiJ_G0026167) #14	Lrrc19 (MGP_CAROLIEiJ_G0026166) #15	MGP_CAROLIEiJ_G0026165 #16	Plaa (MGP_CAROLIEiJ_G0026164) #17	MGP_CAROLIEiJ_G0026163	Caap1 (MGP_CAROLIEiJ_G0026162) #18	Tusc1 (MGP_CAROLIEiJ_G0026161) #19	Izumo3 (MGP_CAROLIEiJ_G0026160) #21	Elavl2 (MGP_CAROLIEiJ_G0026159) #22	Dmrta1 (MGP_CAROLIEiJ_G0026158) #24	Cdkn2b (MGP_CAROLIEiJ_G0026157) #25	Cdkn2a (MGP_CAROLIEiJ_G0026156) #26	Mtap (MGP_CAROLIEiJ_G0026155) #27	Ifne (MGP_CAROLIEiJ_G0026154) #28	MGP_CAROLIEiJ_G0026153	MGP_CAROLIEiJ_G0026152 ##28	MGP_CAROLIEiJ_G0026151	Klhl9 (MGP_CAROLIEiJ_G0026150)	MGP_CAROLIEiJ_G0026149 ##28	MGP_CAROLIEiJ_G0026148 ##28	MGP_CAROLIEiJ_G0026147 ##28	MGP_CAROLIEiJ_G0026146 #32	Pramel32 (MGP_CAROLIEiJ_G0026145)	MGP_CAROLIEiJ_G0026144 #32
Shrew mouse	MODERN SPECIES	19	Cyp2j12 (MGP_PahariEiJ_G0028511) #7	Cyp2j13 (MGP_PahariEiJ_G0028510) #8	Hook1 (MGP_PahariEiJ_G0028509) #9	Fggy (MGP_PahariEiJ_G0028508) #10	Jun (MGP_PahariEiJ_G0028507) #11	Mysm1 (MGP_PahariEiJ_G0028506) #12	MGP_PahariEiJ_G0028505 #13	Tek (MGP_PahariEiJ_G0028504) #14	Lrrc19 (MGP_PahariEiJ_G0028503) #15	Ift74 (MGP_PahariEiJ_G0028502) #16	Plaa (MGP_PahariEiJ_G0028501) #17	MGP_PahariEiJ_G0028500	Caap1 (MGP_PahariEiJ_G0028499) #18	Tusc1 (MGP_PahariEiJ_G0028498) #19	Izumo3 (MGP_PahariEiJ_G0028497) #21	Elavl2 (MGP_PahariEiJ_G0028496) #22	Dmrta1 (MGP_PahariEiJ_G0028495) #24	Cdkn2b (MGP_PahariEiJ_G0028494) #25	Cdkn2a (MGP_PahariEiJ_G0028493) #26	Mtap (MGP_PahariEiJ_G0028492) #27	Ifne (MGP_PahariEiJ_G0028491) #28	MGP_PahariEiJ_G0028490	MGP_PahariEiJ_G0028488 #29	MGP_PahariEiJ_G0028489 #29	MGP_PahariEiJ_G0028487 #29	MGP_PahariEiJ_G0028486	Klhl9 (MGP_PahariEiJ_G0028485)	MGP_PahariEiJ_G0028483 #34	MGP_PahariEiJ_G0028484 #34	MGP_PahariEiJ_G0028482 #29	MGP_PahariEiJ_G0028481 #29