Rodentia ANCESTRAL SPECIES 9 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.a ##33 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.b.a.a.b.a ##33 Myomorpha ANCESTRAL SPECIES 1 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.b.a.a.b.a ##33 Muroidea ANCESTRAL SPECIES 1 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.o #27 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 Muroidea_A ANCESTRAL SPECIES 3 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT00900000143271 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.o #27 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 Cricetidae ANCESTRAL SPECIES 2 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT00900000143271 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.o #27 ENSGT00940000154359.e ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.b.a.a.b.a ##33 ENSGT00940000158215 #34 Cricetinae ANCESTRAL SPECIES 5 ENSGT00950000182879.b.a.a #8 ENSGT00940000159251 #9 ENSGT00900000143271 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B.gb #26 ENSGT00950000182991.B.fb ##26 ENSGT01000000214430.a.a.b ##27 Golden Hamster MODERN SPECIES 662 ENSMAUG00000021213 #7 ENSMAUG00000008711 #8 Hook1 (ENSMAUG00000017707) #9 Fggy (ENSMAUG00000019211) #10 Jun (ENSMAUG00000007038) #11 ENSMAUG00000014400 #12 Mysm1 (ENSMAUG00000014841) #13 Eqtn (ENSMAUG00000015891) #14 Tek (ENSMAUG00000018555) #15 ENSMAUG00000006577 #16 Ift74 (ENSMAUG00000001215) #17 Plaa (ENSMAUG00000013719) #18 ENSMAUG00000014308 #19 Tusc1 (ENSMAUG00000020941) #20 Izumo3 (ENSMAUG00000014991) #21 Elavl2 (ENSMAUG00000011955) #22 Dmrta1 (ENSMAUG00000004332) #23 Cdkn2b (ENSMAUG00000019635) #24 Cdkn2a (ENSMAUG00000003307) #25 Mtap (ENSMAUG00000010309) #26 ENSMAUG00000004733 #27 Hacd4 (ENSMAUG00000000488) #28 Focad (ENSMAUG00000012306) #29 Mllt3 (ENSMAUG00000021318) #30 Slc24a2 (ENSMAUG00000016398) #31 Acer2 (ENSMAUG00000020667) #32 ENSMAUG00000016545 #33 Dennd4c (ENSMAUG00000002052) #34 ENSMAUG00000020314 #35 Rraga (ENSMAUG00000003702) #36 Saxo1 (ENSMAUG00000004358) #37 Chinese hamster chok1gshd MODERN SPECIES 111 Hook1 (ENSCGRG00001001100) #9 ENSCGRG00001008656 Fggy (ENSCGRG00001024005) #10 Jun (ENSCGRG00001011810) #11 Mysm1 (ENSCGRG00001015762) #13 Eqtn (ENSCGRG00001001186) #14 Tek (ENSCGRG00001018441) #15 Ift74 (ENSCGRG00001020714) #17 Lrrc19 (ENSCGRG00001023151) #16 Plaa (ENSCGRG00001024275) #18 ENSCGRG00001008077 Caap1 (ENSCGRG00001016530) #19 Tusc1 (ENSCGRG00001012163) #20 ENSCGRG00001019319 Izumo3 (ENSCGRG00001023060) #21 Elavl2 (ENSCGRG00001024409) #22 ENSCGRG00001012785 ENSCGRG00001013517 Dmrta1 (ENSCGRG00001014289) #23 Cdkn2b (ENSCGRG00001014610) #24 ENSCGRG00001016483 #25 ENSCGRG00001019783 ENSCGRG00001020377 ##26 Ifne (ENSCGRG00001006683) ##27 ENSCGRG00001005639 ##27 ENSCGRG00001007528 ##27 ENSCGRG00001005821 ##27 ENSCGRG00001006253 ##27 ENSCGRG00001009477 ##27 ENSCGRG00001009627 ##27 ENSCGRG00001005704 ##27 Cricetidae_B ANCESTRAL SPECIES 2 ENSGT00950000182879.b.a.b.b ##8 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT00900000143271 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.o #27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.b.a.a.b.a ##33 ENSGT00940000158215 #34 ENSGT00950000182920.b.a.b.a.b ENSGT00390000008250 Prairie vole MODERN SPECIES 1 Hook1 (ENSMOCG00000020291) #9 ENSMOCG00000016214 Fggy (ENSMOCG00000017533) #10 Jun (ENSMOCG00000006483) #11 Mysm1 (ENSMOCG00000001327) #13 Eqtn (ENSMOCG00000018858) #14 Tek (ENSMOCG00000017310) #15 Lrrc19 (ENSMOCG00000008422) #16 Ift74 (ENSMOCG00000002321) #17 Plaa (ENSMOCG00000017762) #18 Caap1 (ENSMOCG00000012535) #19 ENSMOCG00000003689 Tusc1 (ENSMOCG00000019464) #20 Izumo3 (ENSMOCG00000019669) #21 ENSMOCG00000018411 Elavl2 (ENSMOCG00000016960) #22 ENSMOCG00000004079 Dmrta1 (ENSMOCG00000002337) #23 Cdkn2b (ENSMOCG00000015669) #24 ENSMOCG00000013892 #25 Mtap (ENSMOCG00000012400) #26 ENSMOCG00000003644 #27 ENSMOCG00000004406 #27 ENSMOCG00000003427 #27 ENSMOCG00000004176 #27 Klhl9 (ENSMOCG00000003966) ENSMOCG00000022936 #27 ENSMOCG00000002912 #27 ENSMOCG00000003333 #27 ENSMOCG00000003596 #27 ENSMOCG00000007135 #27 Northern American deer mouse MODERN SPECIES 11 Hook1 (ENSPEMG00000003851) #9 ENSPEMG00000026283 Fggy (ENSPEMG00000007085) #10 Jun (ENSPEMG00000014041) #11 ENSPEMG00000012194 Mysm1 (ENSPEMG00000011781) #13 Eqtn (ENSPEMG00000016567) #14 Tek (ENSPEMG00000000588) #15 Lrrc19 (ENSPEMG00000017681) #16 Ift74 (ENSPEMG00000017074) #17 Plaa (ENSPEMG00000009992) #18 Caap1 (ENSPEMG00000000545) #19 Izumo3 (ENSPEMG00000019058) #21 ENSPEMG00000031412 ENSPEMG00000013102 Elavl2 (ENSPEMG00000014101) #22 Dmrta1 (ENSPEMG00000008771) #23 Cdkn2b (ENSPEMG00000025789) #24 ENSPEMG00000028835 ENSPEMG00000010842 #25 ENSPEMG00000029915 ENSPEMG00000007998 #26 Ifne (ENSPEMG00000029831) ##27 ENSPEMG00000026834 #27 ENSPEMG00000024899 #27 ENSPEMG00000027847 #27 ENSPEMG00000027437 #27 ENSPEMG00000030301 #27 Klhl9 (ENSPEMG00000013714) ENSPEMG00000024802 #27 ENSPEMG00000030502 #27 Murinae ANCESTRAL SPECIES 2 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT00900000143271 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.p.b ##27 ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 Mus ANCESTRAL SPECIES 3 ENSGT00950000182879.b.a.b.b.c ##8 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 Mus_A ANCESTRAL SPECIES 3 ENSGT00950000182879.b.a.b.b.c ##8 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT00860000135766 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 Mus_B ANCESTRAL SPECIES 5 ENSGT00950000182879.b.a.b.b.c ##8 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000164376.c ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT00860000135766 ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a ##27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 Mouse MODERN SPECIES 13 Cyp2j12 (ENSMUSG00000081225) ##8 Cyp2j13 (ENSMUSG00000028571) ##7 Hook1 (ENSMUSG00000028572) #9 Fggy (ENSMUSG00000028573) #10 Jun (ENSMUSG00000052684) #11 Mysm1 (ENSMUSG00000062627) #13 Eqtn (ENSMUSG00000028575) #14 Tek (ENSMUSG00000006386) #15 Lrrc19 (ENSMUSG00000049799) #16 Ift74 (ENSMUSG00000028576) #17 Plaa (ENSMUSG00000028577) #18 Caap1 (ENSMUSG00000028578) #19 Tusc1 (ENSMUSG00000054000) #20 Gm12666 (ENSMUSG00000066107) Izumo3 (ENSMUSG00000028533) #21 Elavl2 (ENSMUSG00000008489) #22 Zfp352 (ENSMUSG00000070902) Dmrta1 (ENSMUSG00000043753) #23 Cdkn2b (ENSMUSG00000073802) #24 Cdkn2a (ENSMUSG00000044303) Mtap (ENSMUSG00000062937) #26 Ifne (ENSMUSG00000045364) ##27 Ifna1 (ENSMUSG00000095498) ##27 Ifna4 (ENSMUSG00000070904) ##27 Ifna5 (ENSMUSG00000096682) ##27 Ifna6 (ENSMUSG00000101252) ##27 Ifna11 (ENSMUSG00000100549) ##27 Ifna7 (ENSMUSG00000100713) ##27 Gm13288 (ENSMUSG00000070908) ##27 Gm13287 (ENSMUSG00000094648) ##27 Gm13285 (ENSMUSG00000095101) ##27 Mus_C ANCESTRAL SPECIES 2 ENSGT00950000182879.b.a.b.b.c ##8 ENSGT00940000155417.a.b ##7 ENSGT00940000159251 #9 ENSGT01000000214434.F #10 ENSGT00940000162061 #11 ENSGT00940000157721 #13 ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00940000161278 #16 ENSGT00390000007109 #17 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000164376.c ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000168083 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT00860000135766 ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a ##27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 spretus MODERN SPECIES 13 Cyp2j13 (MGP_SPRETEiJ_G0027139) ##7 Hook1 (MGP_SPRETEiJ_G0027138) #9 Fggy (MGP_SPRETEiJ_G0027137) #10 Jun (MGP_SPRETEiJ_G0027136) #11 Mysm1 (MGP_SPRETEiJ_G0027135) #13 Eqtn (MGP_SPRETEiJ_G0027134) #14 Tek (MGP_SPRETEiJ_G0027133) #15 MGP_SPRETEiJ_G0027132 Lrrc19 (MGP_SPRETEiJ_G0027131) #16 Ift74 (MGP_SPRETEiJ_G0027130) #17 Plaa (MGP_SPRETEiJ_G0027129) #18 MGP_SPRETEiJ_G0027128 Caap1 (MGP_SPRETEiJ_G0027127) #19 Tusc1 (MGP_SPRETEiJ_G0027126) #20 Izumo3 (MGP_SPRETEiJ_G0027125) #21 Elavl2 (MGP_SPRETEiJ_G0027124) #22 Zfp352 (MGP_SPRETEiJ_G0027123) Dmrta1 (MGP_SPRETEiJ_G0027122) #23 Cdkn2b (MGP_SPRETEiJ_G0027121) #24 Cdkn2a (MGP_SPRETEiJ_G0027120) Mtap (MGP_SPRETEiJ_G0027119) #26 Ifne (MGP_SPRETEiJ_G0027118) ##27 MGP_SPRETEiJ_G0027117 MGP_SPRETEiJ_G0027116 ##27 MGP_SPRETEiJ_G0027115 ##27 MGP_SPRETEiJ_G0027114 Klhl9 (MGP_SPRETEiJ_G0027113) MGP_SPRETEiJ_G0027112 ##27 MGP_SPRETEiJ_G0027111 ##27 MGP_SPRETEiJ_G0027110 ##27 MGP_SPRETEiJ_G0027109 ##27 Steppe mouse MODERN SPECIES 3181 Elavl2 (ENSMSIG00000016130) #22 Zfp352 (ENSMSIG00000016079) ENSMSIG00000016078 Dmrta1 (ENSMSIG00000016072) #23 ENSMSIG00000016052 #24 Cdkn2a (ENSMSIG00000016031) Mtap (ENSMSIG00000016003) #26 Ifne (ENSMSIG00000015993) ##27 Ifna5 (ENSMSIG00000015987) ##27 Ifna4 (ENSMSIG00000015985) ##27 Ryukyu mouse MODERN SPECIES 13 Cyp2j12 (MGP_CAROLIEiJ_G0026174) ##8 Cyp2j13 (MGP_CAROLIEiJ_G0026173) ##7 Hook1 (MGP_CAROLIEiJ_G0026172) #9 Fggy (MGP_CAROLIEiJ_G0026171) #10 Jun (MGP_CAROLIEiJ_G0026170) #11 Mysm1 (MGP_CAROLIEiJ_G0026169) #13 Eqtn (MGP_CAROLIEiJ_G0026168) #14 Tek (MGP_CAROLIEiJ_G0026167) #15 Lrrc19 (MGP_CAROLIEiJ_G0026166) #16 MGP_CAROLIEiJ_G0026165 #17 Plaa (MGP_CAROLIEiJ_G0026164) #18 MGP_CAROLIEiJ_G0026163 Caap1 (MGP_CAROLIEiJ_G0026162) #19 Tusc1 (MGP_CAROLIEiJ_G0026161) #20 Izumo3 (MGP_CAROLIEiJ_G0026160) #21 Elavl2 (MGP_CAROLIEiJ_G0026159) #22 Dmrta1 (MGP_CAROLIEiJ_G0026158) #23 Cdkn2b (MGP_CAROLIEiJ_G0026157) #24 Cdkn2a (MGP_CAROLIEiJ_G0026156) Mtap (MGP_CAROLIEiJ_G0026155) #26 Ifne (MGP_CAROLIEiJ_G0026154) ##27 MGP_CAROLIEiJ_G0026153 MGP_CAROLIEiJ_G0026152 ##27 MGP_CAROLIEiJ_G0026151 Klhl9 (MGP_CAROLIEiJ_G0026150) MGP_CAROLIEiJ_G0026149 ##27 MGP_CAROLIEiJ_G0026148 ##27 MGP_CAROLIEiJ_G0026147 ##27 MGP_CAROLIEiJ_G0026146 ##27 Pramel32 (MGP_CAROLIEiJ_G0026145) MGP_CAROLIEiJ_G0026144 ##27 Shrew mouse MODERN SPECIES 19 Cyp2j12 (MGP_PahariEiJ_G0028511) ##8 Cyp2j13 (MGP_PahariEiJ_G0028510) ##7 Hook1 (MGP_PahariEiJ_G0028509) #9 Fggy (MGP_PahariEiJ_G0028508) #10 Jun (MGP_PahariEiJ_G0028507) #11 Mysm1 (MGP_PahariEiJ_G0028506) #13 MGP_PahariEiJ_G0028505 #14 Tek (MGP_PahariEiJ_G0028504) #15 Lrrc19 (MGP_PahariEiJ_G0028503) #16 Ift74 (MGP_PahariEiJ_G0028502) #17 Plaa (MGP_PahariEiJ_G0028501) #18 MGP_PahariEiJ_G0028500 Caap1 (MGP_PahariEiJ_G0028499) #19 Tusc1 (MGP_PahariEiJ_G0028498) #20 Izumo3 (MGP_PahariEiJ_G0028497) #21 Elavl2 (MGP_PahariEiJ_G0028496) #22 Dmrta1 (MGP_PahariEiJ_G0028495) #23 Cdkn2b (MGP_PahariEiJ_G0028494) #24 Cdkn2a (MGP_PahariEiJ_G0028493) Mtap (MGP_PahariEiJ_G0028492) #26 Ifne (MGP_PahariEiJ_G0028491) ##27 MGP_PahariEiJ_G0028490 MGP_PahariEiJ_G0028488 ##27 MGP_PahariEiJ_G0028489 ##27 MGP_PahariEiJ_G0028487 ##27 MGP_PahariEiJ_G0028486 Klhl9 (MGP_PahariEiJ_G0028485) MGP_PahariEiJ_G0028483 ##27 MGP_PahariEiJ_G0028484 ##27 MGP_PahariEiJ_G0028482 ##27 MGP_PahariEiJ_G0028481 ##27 Rat MODERN SPECIES 15 Hook1 (ENSRNOG00000026226) #9 AABR07049299.1 (ENSRNOG00000026234) Fggy (ENSRNOG00000008907) #10 Jun (ENSRNOG00000026293) #11 Mysm1 (ENSRNOG00000026299) #13 Eqtn (ENSRNOG00000026323) #14 Tek (ENSRNOG00000008587) #15 Lrrc19 (ENSRNOG00000022225) #16 Ift74 (ENSRNOG00000008075) #17 Plaa (ENSRNOG00000007753) #18 Caap1 (ENSRNOG00000007299) #19 Tusc1 (ENSRNOG00000066328) #20 AABR07049228.1 (ENSRNOG00000056007) AABR07049223.1 (ENSRNOG00000032516) Izumo3 (ENSRNOG00000022488) #21 Elavl2 (ENSRNOG00000006853) #22 Zfp353 (ENSRNOG00000050804) Zfp352 (ENSRNOG00000033600) Dmrta1 (ENSRNOG00000024093) #23 Cdkn2b (ENSRNOG00000006735) #24 Cdkn2a (ENSRNOG00000059837) ENSRNOG00000070364 Mtap (ENSRNOG00000006615) #26 LOC100362345 (ENSRNOG00000024197) Ifne (ENSRNOG00000024204) ##27 LOC100911527 (ENSRNOG00000065328) ##27 LOC120103164 (ENSRNOG00000070321) ##27 LOC120103163 (ENSRNOG00000066857) ##27 RGD1560539 (ENSRNOG00000066962) ##27 LOC120103162 (ENSRNOG00000065583) ##27 LOC120103161 (ENSRNOG00000063625) ##27 Upper Galilee mountains blind mole rat MODERN SPECIES 628 C9orf72 (ENSNGAG00000023767) Mob3b (ENSNGAG00000023396) Eqtn (ENSNGAG00000023403) #14 Tek (ENSNGAG00000019538) #15 Lrrc19 (ENSNGAG00000004826) #16 Ift74 (ENSNGAG00000005078) #17 Plaa (ENSNGAG00000022466) #18 ENSNGAG00000021141 Caap1 (ENSNGAG00000022127) #19 Tusc1 (ENSNGAG00000001051) #20 Izumo3 (ENSNGAG00000013642) #21 ENSNGAG00000022004 Elavl2 (ENSNGAG00000014535) #22 ENSNGAG00000021866 Dmrta1 (ENSNGAG00000023922) #23 Cdkn2b (ENSNGAG00000012585) #24 ENSNGAG00000022636 #25 ENSNGAG00000015985 #26 Klhl9 (ENSNGAG00000012889) Lesser Egyptian jerboa MODERN SPECIES 66 Aco1 (ENSJJAG00000013824) ENSJJAG00000008353 ENSJJAG00000022023 Lingo2 (ENSJJAG00000010453) C9orf72 (ENSJJAG00000008608) Mob3b (ENSJJAG00000000886) ENSJJAG00000020051 Tek (ENSJJAG00000019197) #15 Ift74 (ENSJJAG00000017963) #17 Lrrc19 (ENSJJAG00000022557) #16 Plaa (ENSJJAG00000013453) #18 Caap1 (ENSJJAG00000012208) #19 ENSJJAG00000019508 ENSJJAG00000011332 Izumo3 (ENSJJAG00000017341) #21 Elavl2 (ENSJJAG00000008247) #22 ENSJJAG00000021773 Dmrta1 (ENSJJAG00000015837) #23 ENSJJAG00000009725 ENSJJAG00000009128 Cdkn2b (ENSJJAG00000021247) #24 ENSJJAG00000017320 #25 ENSJJAG00000010173 #26 Klhl9 (ENSJJAG00000007691) ENSJJAG00000024178 Hacd4 (ENSJJAG00000024303) #28 Focad (ENSJJAG00000024309) #29 Mllt3 (ENSJJAG00000012196) #30 ENSJJAG00000018542 Slc24a2 (ENSJJAG00000020852) #31 Acer2 (ENSJJAG00000020889) #32 Kangaroo rat MODERN SPECIES 372 Lingo2 (ENSDORG00000029438) C9orf72 (ENSDORG00000006734) Mob3b (ENSDORG00000010444) ENSDORG00000010654 #14 Tek (ENSDORG00000010652) #15 Lrrc19 (ENSDORG00000008965) #16 Ift74 (ENSDORG00000008963) #17 Plaa (ENSDORG00000002789) #18 Caap1 (ENSDORG00000025530) #19 Tusc1 (ENSDORG00000029686) #20 ENSDORG00000005292 Izumo3 (ENSDORG00000027519) #21 Elavl2 (ENSDORG00000010437) #22 Dmrta1 (ENSDORG00000015411) #23 Cdkn2b (ENSDORG00000012076) #24 ENSDORG00000012075 #25 Mtap (ENSDORG00000012074) #26 Klhl9 (ENSDORG00000028408) Hacd4 (ENSDORG00000006925) #28 Focad (ENSDORG00000006921) #29 ENSDORG00000028514 #30 ENSDORG00000027266 Slc24a2 (ENSDORG00000015412) #31 Acer2 (ENSDORG00000002403) #32 ENSDORG00000012057 ##33 Dennd4c (ENSDORG00000012055) #34 ENSDORG00000014197 Haus6 (ENSDORG00000026577) Rodentia_A ANCESTRAL SPECIES 11 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000167452 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.a ##33 ENSGT00390000009819.a.b.a.a.b.a ##33 ENSGT00940000158215 #34 ENSGT00950000182920.b.a.b.a.b Sciuridae ANCESTRAL SPECIES 6 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078.g #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT00940000154359.e ENSGT01000000214430.a.b ##27 ENSGT00530000062962.b.b #28 ENSGT00390000004438 #29 ENSGT00940000155903 #30 ENSGT01030000234532.B.e.a #31 ENSGT00730000110920.b.a.b #32 ENSGT00390000009819.a.b.a.a.b.a ##33 ENSGT00940000158215 #34 Marmotini ANCESTRAL SPECIES 1 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00960000189870 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000165099 ENSGT00940000163078.g #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b #27 ENSGT01000000214430.a.b.f.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.a #27 ENSGT01000000214430.a.a.a.a.a.b.m.b #27 ENSGT00940000154359.e ENSGT01000000214430.a.a.a.a.a.b.n.a.a #27 ENSGT01000000214430.a.a.a.a.a.b.n.b.b #27 ENSGT01000000214430.a.b.f.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.m.a #27 Marmotini_b ANCESTRAL SPECIES 2 ENSGT00940000153173.a ENSGT00940000157772 ENSGT00960000189870 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00390000017010 #19 ENSGT00390000013920 #20 ENSGT00390000017601 #21 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000165099 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.b ##27 ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b #27 Arctic ground squirrel MODERN SPECIES 198 IZUMO3 (ENSUPAG00010017958) #21 ELAVL2 (ENSUPAG00010017838) #22 DMRTA1 (ENSUPAG00010017830) #23 CDKN2B (ENSUPAG00010017817) #24 ENSUPAG00010017810 MTAP (ENSUPAG00010017804) #26 IFNE (ENSUPAG00010017802) ##27 ENSUPAG00010017790 #27 ENSUPAG00010017776 #27 Squirrel MODERN SPECIES 427 ELAVL2 (ENSSTOG00000007792) #22 Alpin marmot MODERN SPECIES 30 RIGI (ENSMMMG00000008863) ACO1 (ENSMMMG00000008891) ENSMMMG00000008959 LINGO2 (ENSMMMG00000008968) ENSMMMG00000008980 C9orf72 (ENSMMMG00000008985) MOB3B (ENSMMMG00000009010) EQTN (ENSMMMG00000009014) #14 TEK (ENSMMMG00000009044) #15 IFT74 (ENSMMMG00000009198) #17 LRRC19 (ENSMMMG00000009258) #16 PLAA (ENSMMMG00000009283) #18 CAAP1 (ENSMMMG00000009307) #19 ENSMMMG00000009342 IZUMO3 (ENSMMMG00000009377) #21 ELAVL2 (ENSMMMG00000009415) #22 ENSMMMG00000009529 DMRTA1 (ENSMMMG00000009543) #23 ENSMMMG00000009596 #25 ENSMMMG00000009612 #25 MTAP (ENSMMMG00000009628) #26 ENSMMMG00000009642 IFNE (ENSMMMG00000009652) ##27 ENSMMMG00000009657 #27 Eurasian red squirrel MODERN SPECIES 6 LINGO2 (ENSSVLG00005024258) C9orf72 (ENSSVLG00005024231) IFNK (ENSSVLG00005024213) ##27 MOB3B (ENSSVLG00005024202) ENSSVLG00005024176 ENSSVLG00005024155 TEK (ENSSVLG00005023870) #15 LRRC19 (ENSSVLG00005023797) #16 IFT74 (ENSSVLG00005023765) #17 PLAA (ENSSVLG00005023742) #18 ENSSVLG00005023720 ENSSVLG00005023705 ENSSVLG00005023697 TUSC1 (ENSSVLG00005023687) #20 IZUMO3 (ENSSVLG00005023611) #21 ELAVL2 (ENSSVLG00005023496) #22 DMRTA1 (ENSSVLG00005023462) #23 CDKN2B (ENSSVLG00005023398) #24 CDKN2A (ENSSVLG00005023359) #25 ENSSVLG00005023302 #26 ENSSVLG00005023288 ##27 ENSSVLG00005023283 #27 ENSSVLG00005023273 #27 ENSSVLG00005023253 #27 ENSSVLG00005023243 ##27 ENSSVLG00005023234 #27 ENSSVLG00005023225 #27 ENSSVLG00005023217 ##27 ENSSVLG00005023193 #27 ENSSVLG00005023180 #27 ENSSVLG00005023171 ##27 Hystricomorpha ANCESTRAL SPECIES 7 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT01100000266946 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.a.a.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT01000000214430.a.a.a.a.b ##27 Naked mole-rat female MODERN SPECIES 3 ENSHGLG00000008527 ENSHGLG00000020201 ##27 MOB3B (ENSHGLG00000005405) TEK (ENSHGLG00000017418) #15 ENSHGLG00000037234 IFT74 (ENSHGLG00000007564) #17 ENSHGLG00000032796 LRRC19 (ENSHGLG00000040675) #16 PLAA (ENSHGLG00000010977) #18 ENSHGLG00000034551 #19 ENSHGLG00000036016 TUSC1 (ENSHGLG00000039095) #20 ENSHGLG00000020416 ENSHGLG00000001616 ENSHGLG00000047261 ELAVL2 (ENSHGLG00000005423) #22 DMRTA1 (ENSHGLG00000051021) #23 ENSHGLG00000040016 CDKN2B (ENSHGLG00000038311) #24 ENSHGLG00000034314 #25 ENSHGLG00000008650 ENSHGLG00000020314 ENSHGLG00000006616 #26 ENSHGLG00000041847 ENSHGLG00000035491 ENSHGLG00000000210 ENSHGLG00000005602 ##33 ENSHGLG00000011793 ENSHGLG00000004959 ENSHGLG00000037708 ENSHGLG00000006210 Hystricomorpha_a ANCESTRAL SPECIES 5 ENSGT01020000230598 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01000000214430.b ##27 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00860000136187 ENSGT00390000017010 #19 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.a.a.a.a ##27 ENSGT01000000214430.a.a.a.a.a.b #27 ENSGT01000000214430.a.b ##27 Guinea pig MODERN SPECIES 2 ENSCPOG00000030241 ENSCPOG00000037353 H2BC18 (ENSCPOG00000030049) ENSCPOG00000033096 ENSCPOG00000040788 LINGO2 (ENSCPOG00000008899) C9orf72 (ENSCPOG00000009473) ENSCPOG00000000866 ##27 MOB3B (ENSCPOG00000009470) TEK (ENSCPOG00000009907) #15 LRRC19 (ENSCPOG00000012981) #16 IFT74 (ENSCPOG00000012980) #17 PLAA (ENSCPOG00000012969) #18 ENSCPOG00000032640 CAAP1 (ENSCPOG00000037143) #19 ELAVL2 (ENSCPOG00000010472) #22 DMRTA1 (ENSCPOG00000036480) #23 CDKN2B (ENSCPOG00000001268) #24 CDKN2A (ENSCPOG00000023988) #25 ENSCPOG00000000825 #26 ENSCPOG00000010375 ##27 ENSCPOG00000033588 #27 ENSCPOG00000010467 ##27 ENSCPOG00000027262 #27 ENSCPOG00000036041 #27 ENSCPOG00000039788 #27 ENSCPOG00000021662 #27 ENSCPOG00000040424 #27 ENSCPOG00000037617 #27 ENSCPOG00000031809 #27 ENSCPOG00000036367 #27 Hystricomorpha_b ANCESTRAL SPECIES 11 ENSGT00390000006684 ENSGT00390000007535 ENSGT01020000230598 ENSGT00530000064170.e ENSGT00940000153173.a ENSGT00940000157772 ENSGT00940000156665 ENSGT00390000005644 ENSGT01050000244898.a.a.a.b ENSGT00390000010786 #14 ENSGT00940000158840 #15 ENSGT00390000007109 #17 ENSGT00940000161278 #16 ENSGT00550000074944 #18 ENSGT00390000017010 #19 ENSGT00940000156823.e #22 ENSGT00940000160640 #23 ENSGT00940000162423 #24 ENSGT00940000163078 #25 ENSGT00950000182991.B #26 ENSGT01000000214430.a.a.a.a.a.b #27 Long-tailed chinchilla MODERN SPECIES 179 TOPORS (ENSCLAG00000002292) RIGI (ENSCLAG00000002351) ACO1 (ENSCLAG00000002487) ENSCLAG00000002806 ENSCLAG00000001658 LINGO2 (ENSCLAG00000017459) C9orf72 (ENSCLAG00000001862) MOB3B (ENSCLAG00000001885) ENSCLAG00000001968 #14 ENSCLAG00000001999 #14 TEK (ENSCLAG00000002200) #15 IFT74 (ENSCLAG00000002217) #17 LRRC19 (ENSCLAG00000002476) #16 PLAA (ENSCLAG00000002600) #18 CAAP1 (ENSCLAG00000002895) #19 ELAVL2 (ENSCLAG00000003388) #22 ENSCLAG00000004081 #23 CDKN2B (ENSCLAG00000004253) #24 CDKN2A (ENSCLAG00000001664) #25 MTAP (ENSCLAG00000001731) #26 Degu MODERN SPECIES 140 ENSODEG00000002236 ENSODEG00000018803 LINGO2 (ENSODEG00000018786) C9orf72 (ENSODEG00000002381) MOB3B (ENSODEG00000002400) TEK (ENSODEG00000002511) #15 IFT74 (ENSODEG00000003146) #17 LRRC19 (ENSODEG00000003217) #16 PLAA (ENSODEG00000003249) #18 CAAP1 (ENSODEG00000002253) #19 ENSODEG00000018769 ENSODEG00000002277 ENSODEG00000002352 ELAVL2 (ENSODEG00000002531) #22 DMRTA1 (ENSODEG00000003392) #23 ENSODEG00000003574 CDKN2B (ENSODEG00000003617) #24 ENSODEG00000003701 ENSODEG00000003787 #26 ENSODEG00000004039 #27 ENSODEG00000004090 #27