Murinae	ANCESTRAL SPECIES	7	ENSGT00940000153916.A	ENSGT00940000162099 #7	ENSGT00950000183189.a.a #8	ENSGT00950000183121.b.a #9	ENSGT00940000154035.a #10	ENSGT01030000234579.A.a #11	ENSGT00950000183153.c.a #12	ENSGT00390000010169 #13	ENSGT00940000160323.b #14	ENSGT00940000157623 #15	ENSGT00940000160414 #16	ENSGT00940000162021 #17	ENSGT00390000018418 #18	ENSGT00440000037582 #19	ENSGT00860000136019	ENSGT00940000158001 #22	ENSGT00390000002475	ENSGT00940000159306 #23	ENSGT00940000153761.A #24	ENSGT00610000086191 #25	ENSGT00940000161326 #26	ENSGT00940000161510 #27	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609 #31	ENSGT00940000159217 #32	ENSGT00910000148083	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00950000185081
Mus	ANCESTRAL SPECIES	2	ENSGT00940000153916.A	ENSGT00940000162099 #7	ENSGT00950000183189.a.a #8	ENSGT00950000183121.b.a #9	ENSGT00940000154035.a #10	ENSGT01030000234579.A.a #11	ENSGT00950000183153.c.a #12	ENSGT00390000010169 #13	ENSGT00940000160323.b #14	ENSGT00940000157623 #15	ENSGT00940000160414 #16	ENSGT00940000162021 #17	ENSGT00390000018418 #18	ENSGT00440000037582 #19	ENSGT00860000136019	ENSGT00940000158001 #22	ENSGT00390000002475	ENSGT00940000159306 #23	ENSGT00940000153761.A #24	ENSGT00610000086191 #25	ENSGT00940000161326 #26	ENSGT00940000161510 #27	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609 #31	ENSGT00940000159217 #32	ENSGT00910000148083	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00950000185081
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000153916.A	ENSGT00940000162099 #7	ENSGT00950000183189.a.a #8	ENSGT00950000183121.b.a #9	ENSGT00940000154035.a #10	ENSGT01030000234579.A.a #11	ENSGT00950000183153.c.a #12	ENSGT00390000010169 #13	ENSGT00940000160323.b #14	ENSGT00940000157623 #15	ENSGT00940000160414 #16	ENSGT00940000162021 #17	ENSGT00390000018418 #18	ENSGT00440000037582 #19	ENSGT00860000136019	ENSGT00940000158001 #22	ENSGT00390000002475	ENSGT00940000159306 #23	ENSGT00940000153761.A #24	ENSGT00610000086191 #25	ENSGT00940000161326 #26	ENSGT00940000161510 #27	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609 #31	ENSGT00940000159217 #32	ENSGT00910000148083	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00950000185081
Ryukyu mouse	MODERN SPECIES	2	Sox15 (MGP_CAROLIEiJ_G0016579) #7	Fxr2 (MGP_CAROLIEiJ_G0016578) #8	Sat2 (MGP_CAROLIEiJ_G0016577) #9	Shbg (MGP_CAROLIEiJ_G0016576) #10	Atp1b2 (MGP_CAROLIEiJ_G0016575) #11	Trp53 (MGP_CAROLIEiJ_G0016574) #12	Wrap53 (MGP_CAROLIEiJ_G0016573) #13	Efnb3 (MGP_CAROLIEiJ_G0016572) #14	Dnah2 (MGP_CAROLIEiJ_G0016571) #15	Kdm6b (MGP_CAROLIEiJ_G0016570) #16	Tmem88 (MGP_CAROLIEiJ_G0016569) #17	Naa38 (MGP_CAROLIEiJ_G0016568) #18	MGP_CAROLIEiJ_G0016567 #19	MGP_CAROLIEiJ_G0016566 #20	MGP_CAROLIEiJ_G0016565 #21	Chd3 (MGP_CAROLIEiJ_G0016564) #22	Kcnab3 (MGP_CAROLIEiJ_G0016563) #23	MGP_CAROLIEiJ_G0016562 #24	Cntrob (MGP_CAROLIEiJ_G0016561) #25	Gucy2e (MGP_CAROLIEiJ_G0016560) #26	Alox8 (MGP_CAROLIEiJ_G0016559) #27	Alox12b (MGP_CAROLIEiJ_G0016558) #28	Aloxe3 (MGP_CAROLIEiJ_G0016557) #29	Hes7 (MGP_CAROLIEiJ_G0016556) #30	MGP_CAROLIEiJ_G0016555 #31	Per1 (MGP_CAROLIEiJ_G0016554) #32	Vamp2 (MGP_CAROLIEiJ_G0016553) #33	Tmem107 (MGP_CAROLIEiJ_G0016552) #34	Borcs6 (MGP_CAROLIEiJ_G0016551) #35	Aurkb (MGP_CAROLIEiJ_G0016550) #36	Ctc1 (MGP_CAROLIEiJ_G0016549) #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000153916.A	ENSGT00940000162099 #7	ENSGT00950000183189.a.a #8	ENSGT00950000183121.b.a #9	ENSGT00940000154035.a #10	ENSGT01030000234579.A.a #11	ENSGT00950000183153.c.a #12	ENSGT00390000010169 #13	ENSGT00940000160323.b #14	ENSGT00940000157623 #15	ENSGT00940000160414 #16	ENSGT00940000162021 #17	ENSGT00390000018418 #18	ENSGT00440000037582 #19	ENSGT00860000136019	ENSGT00940000158001 #22	ENSGT00390000002475	ENSGT00940000159306 #23	ENSGT00940000153761.A #24	ENSGT00610000086191 #25	ENSGT00940000161326 #26	ENSGT00940000161510 #27	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609 #31	ENSGT00940000159217 #32	ENSGT00910000148083	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00950000185081
Mouse	MODERN SPECIES	2	Cd68 (ENSMUSG00000018774)	Mpdu1 (ENSMUSG00000018761)	Sox15 (ENSMUSG00000041287) #7	Fxr2 (ENSMUSG00000018765) #8	Sat2 (ENSMUSG00000069835) #9	Shbg (ENSMUSG00000005202) #10	Atp1b2 (ENSMUSG00000041329) #11	Trp53 (ENSMUSG00000059552) #12	Wrap53 (ENSMUSG00000041346) #13	Efnb3 (ENSMUSG00000003934) #14	Dnah2 (ENSMUSG00000005237) #15	Kdm6b (ENSMUSG00000018476) #16	Tmem88 (ENSMUSG00000045377) #17	Naa38 (ENSMUSG00000059278) #18	Cyb5d1 (ENSMUSG00000044795) #19	Chd3 (ENSMUSG00000018474) #22	Rnf227 (ENSMUSG00000043419)	Kcnab3 (ENSMUSG00000018470) #23	Trappc1 (ENSMUSG00000049299) #24	Cntrob (ENSMUSG00000032782) #25	Gucy2e (ENSMUSG00000020890) #26	Alox8 (ENSMUSG00000020891) #27	Alox12b (ENSMUSG00000032807) #28	Aloxe3 (ENSMUSG00000020892) #29	Hes7 (ENSMUSG00000023781) #30	Per1 (ENSMUSG00000020893) #32	Vamp2 (ENSMUSG00000020894) #33	Tmem107 (ENSMUSG00000020895) #34	Borcs6 (ENSMUSG00000045176) #35	Aurkb (ENSMUSG00000020897) #36	Ctc1 (ENSMUSG00000020898) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000153916.A	ENSGT00940000162099 #7	ENSGT00950000183189.a.a #8	ENSGT00950000183121.b.a #9	ENSGT00940000154035.a #10	ENSGT01030000234579.A.a #11	ENSGT00950000183153.c.a #12	ENSGT00390000010169 #13	ENSGT00940000160323.b #14	ENSGT00940000157623 #15	ENSGT00940000160414 #16	ENSGT00940000162021 #17	ENSGT00390000018418 #18	ENSGT00440000037582 #19	ENSGT00860000136019	ENSGT00940000158001 #22	ENSGT00390000002475	ENSGT00940000159306 #23	ENSGT00940000153761.A #24	ENSGT00610000086191 #25	ENSGT00940000161326 #26	ENSGT00940000161510 #27	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609 #31	ENSGT00940000159217 #32	ENSGT00910000148083	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00950000185081
spretus	MODERN SPECIES	2	Sox15 (MGP_SPRETEiJ_G0017415) #7	Fxr2 (MGP_SPRETEiJ_G0017414) #8	Sat2 (MGP_SPRETEiJ_G0017413) #9	Shbg (MGP_SPRETEiJ_G0017412) #10	Atp1b2 (MGP_SPRETEiJ_G0017411) #11	Trp53 (MGP_SPRETEiJ_G0017410) #12	Wrap53 (MGP_SPRETEiJ_G0017409) #13	Efnb3 (MGP_SPRETEiJ_G0017408) #14	Dnah2 (MGP_SPRETEiJ_G0017407) #15	Kdm6b (MGP_SPRETEiJ_G0017406) #16	Tmem88 (MGP_SPRETEiJ_G0017405) #17	Naa38 (MGP_SPRETEiJ_G0017404) #18	MGP_SPRETEiJ_G0017403 #19	MGP_SPRETEiJ_G0017402 #19	MGP_SPRETEiJ_G0017401	Chd3 (MGP_SPRETEiJ_G0017400) #22	Kcnab3 (MGP_SPRETEiJ_G0017399) #23	MGP_SPRETEiJ_G0017398 #24	Cntrob (MGP_SPRETEiJ_G0017397) #25	Gucy2e (MGP_SPRETEiJ_G0017396) #26	Alox8 (MGP_SPRETEiJ_G0017395) #27	Alox12b (MGP_SPRETEiJ_G0017394) #28	Aloxe3 (MGP_SPRETEiJ_G0017393) #29	Hes7 (MGP_SPRETEiJ_G0017392) #30	MGP_SPRETEiJ_G0017391 #31	Per1 (MGP_SPRETEiJ_G0017390) #32	Vamp2 (MGP_SPRETEiJ_G0017389) #33	Tmem107 (MGP_SPRETEiJ_G0017388) #34	Borcs6 (MGP_SPRETEiJ_G0017387) #35	Aurkb (MGP_SPRETEiJ_G0017386) #36	Ctc1 (MGP_SPRETEiJ_G0017385) #37
Steppe mouse	MODERN SPECIES	2607	Cd68 (ENSMSIG00000025801)	Mpdu1 (ENSMSIG00000025820)	Sox15 (ENSMSIG00000025831) #7	Fxr2 (ENSMSIG00000025838) #8	ENSMSIG00000025872 #9	Shbg (ENSMSIG00000025876) #10	Atp1b2 (ENSMSIG00000025884) #11	ENSMSIG00000025886 #12	Wrap53 (ENSMSIG00000026006) #13	Efnb3 (ENSMSIG00000026027) #14	Dnah2 (ENSMSIG00000026044) #15	Kdm6b (ENSMSIG00000026234) #16	Tmem88 (ENSMSIG00000026250) #17	Naa38 (ENSMSIG00000026252) #18	Cyb5d1 (ENSMSIG00000026258) #19	Chd3 (ENSMSIG00000026278) #22	Rnf227 (ENSMSIG00000026421)	Kcnab3 (ENSMSIG00000026433) #23	Trappc1 (ENSMSIG00000026458) #24	Cntrob (ENSMSIG00000026477) #25
Shrew mouse	MODERN SPECIES	5	Sox15 (MGP_PahariEiJ_G0017710) #7	Fxr2 (MGP_PahariEiJ_G0017709) #8	Sat2 (MGP_PahariEiJ_G0017708) #9	MGP_PahariEiJ_G0017707 #10	Atp1b2 (MGP_PahariEiJ_G0017706) #11	Trp53 (MGP_PahariEiJ_G0017705) #12	Wrap53 (MGP_PahariEiJ_G0017704) #13	Efnb3 (MGP_PahariEiJ_G0017703) #14	Dnah2 (MGP_PahariEiJ_G0017702) #15	Kdm6b (MGP_PahariEiJ_G0017701) #16	Tmem88 (MGP_PahariEiJ_G0017700) #17	Naa38 (MGP_PahariEiJ_G0017699) #18	MGP_PahariEiJ_G0017698 #19	MGP_PahariEiJ_G0017697 #19	MGP_PahariEiJ_G0017696	Chd3 (MGP_PahariEiJ_G0017695) #22	Kcnab3 (MGP_PahariEiJ_G0017694) #23	Trappc1 (MGP_PahariEiJ_G0017693) #24	Cntrob (MGP_PahariEiJ_G0017692) #25	Gucy2e (MGP_PahariEiJ_G0017691) #26	Alox8 (MGP_PahariEiJ_G0017690) #27	Alox12b (MGP_PahariEiJ_G0017689) #28	Aloxe3 (MGP_PahariEiJ_G0017688) #29	Hes7 (MGP_PahariEiJ_G0017687) #30	MGP_PahariEiJ_G0017686 #31	Per1 (MGP_PahariEiJ_G0017685) #32	Vamp2 (MGP_PahariEiJ_G0017684) #33	Tmem107 (MGP_PahariEiJ_G0017683) #34	Borcs6 (MGP_PahariEiJ_G0017682) #35	Aurkb (MGP_PahariEiJ_G0017681) #36	Ctc1 (MGP_PahariEiJ_G0017680) #37
Rat	MODERN SPECIES	1	Cd68 (ENSRNOG00000037563)	Mpdu1 (ENSRNOG00000012162)	Sox15 (ENSRNOG00000012155) #7	Fxr2 (ENSRNOG00000011876) #8	Sat2 (ENSRNOG00000011714) #9	Shbg (ENSRNOG00000011357) #10	Atp1b2 (ENSRNOG00000011227) #11	Tp53 (ENSRNOG00000010756) #12	Wrap53 (ENSRNOG00000010520) #13	Efnb3 (ENSRNOG00000010320) #14	Dnah2 (ENSRNOG00000052688) #15	Kdm6b (ENSRNOG00000037613) #16	Tmem88 (ENSRNOG00000009870) #17	Naa38 (ENSRNOG00000009823) #18	Cyb5d1 (ENSRNOG00000066275) #19	Chd3 (ENSRNOG00000009722) #22	Rnf227 (ENSRNOG00000021540)	Kcnab3 (ENSRNOG00000008480) #23	Trappc1 (ENSRNOG00000037627) #24	Cntrob (ENSRNOG00000008270) #25	Gucy2d (ENSRNOG00000007931) #26	Alox15b (ENSRNOG00000007778) #27	Alox12b (ENSRNOG00000022210) #28	LOC100359495 (ENSRNOG00000064074)	Aloxe3 (ENSRNOG00000007454) #29	Hes7 (ENSRNOG00000007391) #30	Per1 (ENSRNOG00000007387) #32	Vamp2 (ENSRNOG00000006989) #33	ENSRNOG00000067865	Tmem107 (ENSRNOG00000006519) #34	Borcs6 (ENSRNOG00000006513) #35