Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00950000182899.C.b	ENSGT00940000153916.A #12	ENSGT00940000162099 #11	ENSGT00950000183189.a.a #13	ENSGT00950000183121.b.a #14	ENSGT00940000154035.a	ENSGT01030000234579.A.a #15	ENSGT00950000183153.c.a #16	ENSGT00390000010169 #17	ENSGT00940000160323.b	ENSGT00940000157623	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326	ENSGT00940000161510	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609	ENSGT00940000159217	ENSGT00940000158370 #32	ENSGT00390000014827 #33	ENSGT00490000043453 #34	ENSGT00940000158980 #35
Naked mole-rat female	MODERN SPECIES	12	TNFSF12 (ENSHGLG00000010122) #7	TNFSF13 (ENSHGLG00000010768) #8	ENSHGLG00000033365 #9	ENSHGLG00000047031 #10	ENSHGLG00000047752 #11	ENSHGLG00000047155 #12	FXR2 (ENSHGLG00000012247) #13	ENSHGLG00000042748 #14	ENSHGLG00000011044 #15	Tp53 (ENSHGLG00000038082) #16	WRAP53 (ENSHGLG00000014000) #17	ENSHGLG00000038949 #18	TMEM88 (ENSHGLG00000034924) #19	NAA38 (ENSHGLG00000033435) #20	CYB5D1 (ENSHGLG00000010161) #21	CHD3 (ENSHGLG00000012017) #22	RNF227 (ENSHGLG00000045551) #23	KCNAB3 (ENSHGLG00000016886) #24	TRAPPC1 (ENSHGLG00000035580) #25	CNTROB (ENSHGLG00000016550) #26	ENSHGLG00000049475 #27	ALOX12B (ENSHGLG00000019071) #28	ALOXE3 (ENSHGLG00000011148) #29	HES7 (ENSHGLG00000012300) #30	ENSHGLG00000033044 #31	VAMP2 (ENSHGLG00000016457) #32	TMEM107 (ENSHGLG00000033965) #33	BORCS6 (ENSHGLG00000013633) #34	ENSHGLG00000047858 #35	ENSHGLG00000035239 #36	CTC1 (ENSHGLG00000015968) #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00950000182899.C.b	ENSGT00940000153916.A #12	ENSGT00940000162099 #11	ENSGT00950000183189.a.a #13	ENSGT00950000183121.b.a #14	ENSGT00940000154035.a	ENSGT01030000234579.A.a #15	ENSGT00950000183153.c.a #16	ENSGT00390000010169 #17	ENSGT00940000160323.b	ENSGT00940000157623	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326	ENSGT00940000161510	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609	ENSGT00940000159217	ENSGT00940000158370 #32	ENSGT00390000014827 #33	ENSGT00940000158980 #35	ENSGT00390000011553 #37
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00950000182899.C.b	ENSGT00940000153916.A #12	ENSGT00940000162099 #11	ENSGT00950000183189.a.a #13	ENSGT00950000183121.b.a #14	ENSGT00940000154035.a	ENSGT01030000234579.A.a #15	ENSGT00950000183153.c.a #16	ENSGT00390000010169 #17	ENSGT00940000160323.b	ENSGT00940000157623	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326	ENSGT00940000161510	ENSGT00940000162032 #28	ENSGT00940000156796 #29	ENSGT00730000111282 #30	ENSGT00860000135609	ENSGT00940000159217	ENSGT00940000158370 #32	ENSGT00390000014827 #33	ENSGT00940000158980 #35	ENSGT00390000011553 #37
Long-tailed chinchilla	MODERN SPECIES	174	CD68 (ENSCLAG00000011317)	MPDU1 (ENSCLAG00000009603) #12	SOX15 (ENSCLAG00000007796) #11	FXR2 (ENSCLAG00000007322) #13	SAT2 (ENSCLAG00000006730) #14	ENSCLAG00000016382	ATP1B2 (ENSCLAG00000015532) #15	TP53 (ENSCLAG00000007189) #16	ENSCLAG00000008651 #17	EFNB3 (ENSCLAG00000008030)	DNAH2 (ENSCLAG00000008437)	KDM6B (ENSCLAG00000006879) #18	TMEM88 (ENSCLAG00000006940) #19	NAA38 (ENSCLAG00000015879) #20	CYB5D1 (ENSCLAG00000016495) #21	CHD3 (ENSCLAG00000010523) #22	RNF227 (ENSCLAG00000008516) #23	KCNAB3 (ENSCLAG00000007675) #24	TRAPPC1 (ENSCLAG00000006633) #25	CNTROB (ENSCLAG00000008419) #26	GUCY2D (ENSCLAG00000011233)	ALOX15B (ENSCLAG00000011947)	ALOX12B (ENSCLAG00000011753) #28	ALOXE3 (ENSCLAG00000013157) #29	HES7 (ENSCLAG00000007782) #30	PER1 (ENSCLAG00000012391)	VAMP2 (ENSCLAG00000012796) #32	TMEM107 (ENSCLAG00000011319) #33	AURKB (ENSCLAG00000015101) #35	CTC1 (ENSCLAG00000014305) #37	PFAS (ENSCLAG00000015433)
Degu	MODERN SPECIES	139	CD68 (ENSODEG00000017563)	MPDU1 (ENSODEG00000017856) #12	SOX15 (ENSODEG00000017501) #11	FXR2 (ENSODEG00000017803) #13	ENSODEG00000017643 #14	SHBG (ENSODEG00000017630)	ATP1B2 (ENSODEG00000017782) #15	TP53 (ENSODEG00000017683) #16	WRAP53 (ENSODEG00000017648) #17	EFNB3 (ENSODEG00000017671)	DNAH2 (ENSODEG00000017776)	KDM6B (ENSODEG00000017794) #18	TMEM88 (ENSODEG00000017852) #19	NAA38 (ENSODEG00000017702) #20	CYB5D1 (ENSODEG00000017742) #21	CHD3 (ENSODEG00000017785) #22	RNF227 (ENSODEG00000017826) #23	KCNAB3 (ENSODEG00000017706) #24	TRAPPC1 (ENSODEG00000017738) #25	CNTROB (ENSODEG00000017795) #26	GUCY2D (ENSODEG00000017784)	ALOX15B (ENSODEG00000017756)	ALOX12B (ENSODEG00000017896) #28	ALOXE3 (ENSODEG00000017730) #29	HES7 (ENSODEG00000017793) #30	ENSODEG00000017780	ENSODEG00000017868	ENSODEG00000017774	VAMP2 (ENSODEG00000017918) #32	TMEM107 (ENSODEG00000017819) #33	AURKB (ENSODEG00000017887) #35
Guinea pig	MODERN SPECIES	61	CD68 (ENSCPOG00000004905)	SOX15 (ENSCPOG00000004915) #11	MPDU1 (ENSCPOG00000032454) #12	FXR2 (ENSCPOG00000023303) #13	SAT2 (ENSCPOG00000031404) #14	SHBG (ENSCPOG00000011310)	ATP1B2 (ENSCPOG00000034285) #15	TP53 (ENSCPOG00000014252) #16	WRAP53 (ENSCPOG00000002599) #17	EFNB3 (ENSCPOG00000022473)	DNAH2 (ENSCPOG00000004386)	KDM6B (ENSCPOG00000004414) #18	TMEM88 (ENSCPOG00000033148) #19	NAA38 (ENSCPOG00000032412) #20	CYB5D1 (ENSCPOG00000004427) #21	CHD3 (ENSCPOG00000022653) #22	RNF227 (ENSCPOG00000027016) #23	KCNAB3 (ENSCPOG00000002028) #24	TRAPPC1 (ENSCPOG00000031689) #25	CNTROB (ENSCPOG00000007169) #26	GUCY2D (ENSCPOG00000001487)	ALOX15B (ENSCPOG00000015598)	ALOX12B (ENSCPOG00000012894) #28	ALOXE3 (ENSCPOG00000012900) #29	HES7 (ENSCPOG00000012913) #30	PER1 (ENSCPOG00000013328)	VAMP2 (ENSCPOG00000039866) #32	TMEM107 (ENSCPOG00000019529) #33	ENSCPOG00000037237	STX8 (ENSCPOG00000002114)	PIK3R5 (ENSCPOG00000010032)