Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a #12	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609 #32	ENSGT00940000159217 #34	ENSGT00940000158370 #35	ENSGT00390000014827 #36	ENSGT00490000043453	ENSGT00940000158980 #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a #12	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609 #32	ENSGT00940000159217 #34	ENSGT00940000158370 #35	ENSGT00390000014827 #36	ENSGT00940000158980 #37	ENSGT00390000011553
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a #12	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609 #32	ENSGT00940000159217 #34	ENSGT00940000158370 #35	ENSGT00390000014827 #36	ENSGT00940000158980 #37	ENSGT00390000011553
Degu	MODERN SPECIES	139	CD68 (ENSODEG00000017563) #7	MPDU1 (ENSODEG00000017856) #8	SOX15 (ENSODEG00000017501) #9	FXR2 (ENSODEG00000017803) #10	ENSODEG00000017643 #11	SHBG (ENSODEG00000017630) #12	ATP1B2 (ENSODEG00000017782) #13	TP53 (ENSODEG00000017683) #14	WRAP53 (ENSODEG00000017648) #15	EFNB3 (ENSODEG00000017671) #16	DNAH2 (ENSODEG00000017776) #17	KDM6B (ENSODEG00000017794) #18	TMEM88 (ENSODEG00000017852) #19	NAA38 (ENSODEG00000017702) #20	CYB5D1 (ENSODEG00000017742) #21	CHD3 (ENSODEG00000017785) #22	RNF227 (ENSODEG00000017826) #23	KCNAB3 (ENSODEG00000017706) #24	TRAPPC1 (ENSODEG00000017738) #25	CNTROB (ENSODEG00000017795) #26	GUCY2D (ENSODEG00000017784) #27	ALOX15B (ENSODEG00000017756) #28	ALOX12B (ENSODEG00000017896) #29	ALOXE3 (ENSODEG00000017730) #30	HES7 (ENSODEG00000017793) #31	ENSODEG00000017780 #32	ENSODEG00000017868 #33	ENSODEG00000017774 #34	VAMP2 (ENSODEG00000017918) #35	TMEM107 (ENSODEG00000017819) #36	AURKB (ENSODEG00000017887) #37
Long-tailed chinchilla	MODERN SPECIES	174	CD68 (ENSCLAG00000011317) #7	MPDU1 (ENSCLAG00000009603) #8	SOX15 (ENSCLAG00000007796) #9	FXR2 (ENSCLAG00000007322) #10	SAT2 (ENSCLAG00000006730) #11	ENSCLAG00000016382	ATP1B2 (ENSCLAG00000015532) #13	TP53 (ENSCLAG00000007189) #14	ENSCLAG00000008651 #15	EFNB3 (ENSCLAG00000008030) #16	DNAH2 (ENSCLAG00000008437) #17	KDM6B (ENSCLAG00000006879) #18	TMEM88 (ENSCLAG00000006940) #19	NAA38 (ENSCLAG00000015879) #20	CYB5D1 (ENSCLAG00000016495) #21	CHD3 (ENSCLAG00000010523) #22	RNF227 (ENSCLAG00000008516) #23	KCNAB3 (ENSCLAG00000007675) #24	TRAPPC1 (ENSCLAG00000006633) #25	CNTROB (ENSCLAG00000008419) #26	GUCY2D (ENSCLAG00000011233) #27	ALOX15B (ENSCLAG00000011947) #28	ALOX12B (ENSCLAG00000011753) #29	ALOXE3 (ENSCLAG00000013157) #30	HES7 (ENSCLAG00000007782) #31	PER1 (ENSCLAG00000012391) #34	VAMP2 (ENSCLAG00000012796) #35	TMEM107 (ENSCLAG00000011319) #36	AURKB (ENSCLAG00000015101) #37	CTC1 (ENSCLAG00000014305)	PFAS (ENSCLAG00000015433)
Guinea pig	MODERN SPECIES	61	CD68 (ENSCPOG00000004905) #7	SOX15 (ENSCPOG00000004915) #9	MPDU1 (ENSCPOG00000032454) #8	FXR2 (ENSCPOG00000023303) #10	SAT2 (ENSCPOG00000031404) #11	SHBG (ENSCPOG00000011310) #12	ATP1B2 (ENSCPOG00000034285) #13	TP53 (ENSCPOG00000014252) #14	WRAP53 (ENSCPOG00000002599) #15	EFNB3 (ENSCPOG00000022473) #16	DNAH2 (ENSCPOG00000004386) #17	KDM6B (ENSCPOG00000004414) #18	TMEM88 (ENSCPOG00000033148) #19	NAA38 (ENSCPOG00000032412) #20	CYB5D1 (ENSCPOG00000004427) #21	CHD3 (ENSCPOG00000022653) #22	RNF227 (ENSCPOG00000027016) #23	KCNAB3 (ENSCPOG00000002028) #24	TRAPPC1 (ENSCPOG00000031689) #25	CNTROB (ENSCPOG00000007169) #26	GUCY2D (ENSCPOG00000001487) #27	ALOX15B (ENSCPOG00000015598) #28	ALOX12B (ENSCPOG00000012894) #29	ALOXE3 (ENSCPOG00000012900) #30	HES7 (ENSCPOG00000012913) #31	PER1 (ENSCPOG00000013328) #34	VAMP2 (ENSCPOG00000039866) #35	TMEM107 (ENSCPOG00000019529) #36	ENSCPOG00000037237	STX8 (ENSCPOG00000002114)	PIK3R5 (ENSCPOG00000010032)
Naked mole-rat female	MODERN SPECIES	12	TNFSF12 (ENSHGLG00000010122)	TNFSF13 (ENSHGLG00000010768)	ENSHGLG00000033365	ENSHGLG00000047031	ENSHGLG00000047752 #9	ENSHGLG00000047155 #8	FXR2 (ENSHGLG00000012247) #10	ENSHGLG00000042748 #11	ENSHGLG00000011044 #13	Tp53 (ENSHGLG00000038082) #14	WRAP53 (ENSHGLG00000014000) #15	ENSHGLG00000038949 #18	TMEM88 (ENSHGLG00000034924) #19	NAA38 (ENSHGLG00000033435) #20	CYB5D1 (ENSHGLG00000010161) #21	CHD3 (ENSHGLG00000012017) #22	RNF227 (ENSHGLG00000045551) #23	KCNAB3 (ENSHGLG00000016886) #24	TRAPPC1 (ENSHGLG00000035580) #25	CNTROB (ENSHGLG00000016550) #26	ENSHGLG00000049475 #30	ALOX12B (ENSHGLG00000019071) #29	ALOXE3 (ENSHGLG00000011148) #30	HES7 (ENSHGLG00000012300) #31	ENSHGLG00000033044	VAMP2 (ENSHGLG00000016457) #35	TMEM107 (ENSHGLG00000033965) #36	BORCS6 (ENSHGLG00000013633)	ENSHGLG00000047858 #37	ENSHGLG00000035239	CTC1 (ENSHGLG00000015968)