Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00910000148083	ENSGT00390000014827 #34	ENSGT00490000043453
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00490000043453	ENSGT00940000158980 #35
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00940000158980 #35	ENSGT00390000011553 #36
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00940000158980 #35	ENSGT00390000011553 #36
Long-tailed chinchilla	MODERN SPECIES	174	CD68 (ENSCLAG00000011317) #7	MPDU1 (ENSCLAG00000009603) #8	SOX15 (ENSCLAG00000007796) #9	FXR2 (ENSCLAG00000007322) #10	SAT2 (ENSCLAG00000006730) #11	ENSCLAG00000016382 #12	ATP1B2 (ENSCLAG00000015532) #13	TP53 (ENSCLAG00000007189) #14	ENSCLAG00000008651 #15	EFNB3 (ENSCLAG00000008030) #16	DNAH2 (ENSCLAG00000008437) #17	KDM6B (ENSCLAG00000006879) #18	TMEM88 (ENSCLAG00000006940) #19	NAA38 (ENSCLAG00000015879) #20	CYB5D1 (ENSCLAG00000016495) #21	CHD3 (ENSCLAG00000010523) #22	RNF227 (ENSCLAG00000008516) #23	KCNAB3 (ENSCLAG00000007675) #24	TRAPPC1 (ENSCLAG00000006633) #25	CNTROB (ENSCLAG00000008419) #26	GUCY2D (ENSCLAG00000011233) #27	ALOX15B (ENSCLAG00000011947) #28	ALOX12B (ENSCLAG00000011753) #29	ALOXE3 (ENSCLAG00000013157) #30	HES7 (ENSCLAG00000007782) #31	PER1 (ENSCLAG00000012391) #32	VAMP2 (ENSCLAG00000012796) #33	TMEM107 (ENSCLAG00000011319) #34	AURKB (ENSCLAG00000015101) #35	CTC1 (ENSCLAG00000014305) #36	PFAS (ENSCLAG00000015433) #37
Degu	MODERN SPECIES	139	CD68 (ENSODEG00000017563) #7	MPDU1 (ENSODEG00000017856) #8	SOX15 (ENSODEG00000017501) #9	FXR2 (ENSODEG00000017803) #10	ENSODEG00000017643 #11	SHBG (ENSODEG00000017630)	ATP1B2 (ENSODEG00000017782) #13	TP53 (ENSODEG00000017683) #14	WRAP53 (ENSODEG00000017648) #15	EFNB3 (ENSODEG00000017671) #16	DNAH2 (ENSODEG00000017776) #17	KDM6B (ENSODEG00000017794) #18	TMEM88 (ENSODEG00000017852) #19	NAA38 (ENSODEG00000017702) #20	CYB5D1 (ENSODEG00000017742) #21	CHD3 (ENSODEG00000017785) #22	RNF227 (ENSODEG00000017826) #23	KCNAB3 (ENSODEG00000017706) #24	TRAPPC1 (ENSODEG00000017738) #25	CNTROB (ENSODEG00000017795) #26	GUCY2D (ENSODEG00000017784) #27	ALOX15B (ENSODEG00000017756) #28	ALOX12B (ENSODEG00000017896) #29	ALOXE3 (ENSODEG00000017730) #30	HES7 (ENSODEG00000017793) #31	ENSODEG00000017780	ENSODEG00000017868 #32	ENSODEG00000017774 #32	VAMP2 (ENSODEG00000017918) #33	TMEM107 (ENSODEG00000017819) #34	AURKB (ENSODEG00000017887) #35
Guinea pig	MODERN SPECIES	61	CD68 (ENSCPOG00000004905) #7	SOX15 (ENSCPOG00000004915) #9	MPDU1 (ENSCPOG00000032454) #8	FXR2 (ENSCPOG00000023303) #10	SAT2 (ENSCPOG00000031404) #11	SHBG (ENSCPOG00000011310)	ATP1B2 (ENSCPOG00000034285) #13	TP53 (ENSCPOG00000014252) #14	WRAP53 (ENSCPOG00000002599) #15	EFNB3 (ENSCPOG00000022473) #16	DNAH2 (ENSCPOG00000004386) #17	KDM6B (ENSCPOG00000004414) #18	TMEM88 (ENSCPOG00000033148) #19	NAA38 (ENSCPOG00000032412) #20	CYB5D1 (ENSCPOG00000004427) #21	CHD3 (ENSCPOG00000022653) #22	RNF227 (ENSCPOG00000027016) #23	KCNAB3 (ENSCPOG00000002028) #24	TRAPPC1 (ENSCPOG00000031689) #25	CNTROB (ENSCPOG00000007169) #26	GUCY2D (ENSCPOG00000001487) #27	ALOX15B (ENSCPOG00000015598) #28	ALOX12B (ENSCPOG00000012894) #29	ALOXE3 (ENSCPOG00000012900) #30	HES7 (ENSCPOG00000012913) #31	PER1 (ENSCPOG00000013328) #32	VAMP2 (ENSCPOG00000039866) #33	TMEM107 (ENSCPOG00000019529) #34	ENSCPOG00000037237	STX8 (ENSCPOG00000002114)	PIK3R5 (ENSCPOG00000010032)
Naked mole-rat female	MODERN SPECIES	12	TNFSF12 (ENSHGLG00000010122)	TNFSF13 (ENSHGLG00000010768)	ENSHGLG00000033365	ENSHGLG00000047031	ENSHGLG00000047752 #9	ENSHGLG00000047155 #8	FXR2 (ENSHGLG00000012247) #10	ENSHGLG00000042748 #11	ENSHGLG00000011044 #13	Tp53 (ENSHGLG00000038082) #14	WRAP53 (ENSHGLG00000014000) #15	ENSHGLG00000038949 #18	TMEM88 (ENSHGLG00000034924) #19	NAA38 (ENSHGLG00000033435) #20	CYB5D1 (ENSHGLG00000010161) #21	CHD3 (ENSHGLG00000012017) #22	RNF227 (ENSHGLG00000045551) #23	KCNAB3 (ENSHGLG00000016886) #24	TRAPPC1 (ENSHGLG00000035580) #25	CNTROB (ENSHGLG00000016550) #26	ENSHGLG00000049475 #30	ALOX12B (ENSHGLG00000019071) #29	ALOXE3 (ENSHGLG00000011148) #30	HES7 (ENSHGLG00000012300) #31	ENSHGLG00000033044	VAMP2 (ENSHGLG00000016457) #33	TMEM107 (ENSHGLG00000033965) #34	BORCS6 (ENSHGLG00000013633)	ENSHGLG00000047858 #35	ENSHGLG00000035239	CTC1 (ENSHGLG00000015968) #36
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00910000148083	ENSGT00390000014827 #34	ENSGT00490000043453
Marmotini	ANCESTRAL SPECIES	42	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00910000148083	ENSGT00390000014827 #34	ENSGT00490000043453
Alpin marmot	MODERN SPECIES	92	EIF4A1 (ENSMMMG00000019682)	CD68 (ENSMMMG00000019708) #7	MPDU1 (ENSMMMG00000019711) #8	SOX15 (ENSMMMG00000019717) #9	FXR2 (ENSMMMG00000019720) #10	SAT2 (ENSMMMG00000019728) #11	SHBG (ENSMMMG00000019737)	ATP1B2 (ENSMMMG00000019742) #13	TP53 (ENSMMMG00000019747) #14	WRAP53 (ENSMMMG00000019760) #15	EFNB3 (ENSMMMG00000019770) #16	KDM6B (ENSMMMG00000019902) #18	TMEM88 (ENSMMMG00000019917) #19	NAA38 (ENSMMMG00000019920) #20	CYB5D1 (ENSMMMG00000019930) #21	CHD3 (ENSMMMG00000019936) #22	KCNAB3 (ENSMMMG00000020007) #24	TRAPPC1 (ENSMMMG00000020030) #25	CNTROB (ENSMMMG00000020034) #26	GUCY2D (ENSMMMG00000020052) #27	ALOX15B (ENSMMMG00000020089) #28	ALOX12B (ENSMMMG00000020121) #29	ALOXE3 (ENSMMMG00000020129) #30	PER1 (ENSMMMG00000020158) #32	VAMP2 (ENSMMMG00000020233) #33	ENSMMMG00000020235	TMEM107 (ENSMMMG00000020245) #34	BORCS6 (ENSMMMG00000020274)	AURKB (ENSMMMG00000020278) #35	CTC1 (ENSMMMG00000020294) #36	ENSMMMG00000020312
Marmotini_b	ANCESTRAL SPECIES	35	ENSGT00950000182899.C.b #7	ENSGT00940000153916.A #8	ENSGT00940000162099 #9	ENSGT00950000183189.a.a #10	ENSGT00950000183121.b.a #11	ENSGT00940000154035.a	ENSGT01030000234579.A.a #13	ENSGT00950000183153.c.a #14	ENSGT00390000010169 #15	ENSGT00940000160323.b #16	ENSGT00940000157623 #17	ENSGT00940000160414 #18	ENSGT00940000162021 #19	ENSGT00390000018418 #20	ENSGT00440000037582 #21	ENSGT00940000158001 #22	ENSGT00390000002475 #23	ENSGT00940000159306 #24	ENSGT00940000153761.A #25	ENSGT00610000086191 #26	ENSGT00940000161326 #27	ENSGT00940000161510 #28	ENSGT00940000162032 #29	ENSGT00940000156796 #30	ENSGT00730000111282 #31	ENSGT00860000135609	ENSGT00940000159217 #32	ENSGT00940000158370 #33	ENSGT00390000014827 #34	ENSGT00490000043453	ENSGT00940000158980 #35
Arctic ground squirrel	MODERN SPECIES	77	CD68 (ENSUPAG00010015311) #7	MPDU1 (ENSUPAG00010015329) #8	SOX15 (ENSUPAG00010015340) #9	FXR2 (ENSUPAG00010015345) #10	SAT2 (ENSUPAG00010015359) #11	SHBG (ENSUPAG00010015369)	ATP1B2 (ENSUPAG00010015380) #13	TP53 (ENSUPAG00010015398) #14	WRAP53 (ENSUPAG00010015444) #15	EFNB3 (ENSUPAG00010015466) #16	DNAH2 (ENSUPAG00010015485) #17	KDM6B (ENSUPAG00010015706) #18	TMEM88 (ENSUPAG00010015803) #19	NAA38 (ENSUPAG00010015814) #20	CYB5D1 (ENSUPAG00010015824) #21	CHD3 (ENSUPAG00010015846) #22	KCNAB3 (ENSUPAG00010015981) #24	TRAPPC1 (ENSUPAG00010016002) #25	CNTROB (ENSUPAG00010016016) #26	GUCY2D (ENSUPAG00010016071) #27	ALOX15B (ENSUPAG00010016133) #28	ALOX12B (ENSUPAG00010016161) #29	ALOXE3 (ENSUPAG00010016179) #30	HES7 (ENSUPAG00010016200) #31	ENSUPAG00010016214	PER1 (ENSUPAG00010016219) #32	VAMP2 (ENSUPAG00010016345) #33	TMEM107 (ENSUPAG00010016354) #34	BORCS6 (ENSUPAG00010016378)	AURKB (ENSUPAG00010016381) #35	CTC1 (ENSUPAG00010016436) #36
Squirrel	MODERN SPECIES	195	EIF4A1 (ENSSTOG00000024814)	SOX15 (ENSSTOG00000005654) #9	MPDU1 (ENSSTOG00000005636) #8	FXR2 (ENSSTOG00000005657) #10	SAT2 (ENSSTOG00000005681) #11	SHBG (ENSSTOG00000029233)	ATP1B2 (ENSSTOG00000019448) #13	TP53 (ENSSTOG00000022774) #14	WRAP53 (ENSSTOG00000002484) #15	EFNB3 (ENSSTOG00000029036) #16	DNAH2 (ENSSTOG00000002487) #17	KDM6B (ENSSTOG00000019400) #18	NAA38 (ENSSTOG00000025950) #20	TMEM88 (ENSSTOG00000001057) #19	CYB5D1 (ENSSTOG00000001060) #21	CHD3 (ENSSTOG00000025907) #22	RNF227 (ENSSTOG00000026440) #23	KCNAB3 (ENSSTOG00000000141) #24	TRAPPC1 (ENSSTOG00000024665) #25	CNTROB (ENSSTOG00000000145) #26	GUCY2D (ENSSTOG00000000149) #27	ALOX15B (ENSSTOG00000003048) #28	ALOX12B (ENSSTOG00000026406) #29	ALOXE3 (ENSSTOG00000004789) #30	HES7 (ENSSTOG00000025336) #31	PER1 (ENSSTOG00000005366) #32	VAMP2 (ENSSTOG00000005379) #33	TMEM107 (ENSSTOG00000020988) #34	BORCS6 (ENSSTOG00000005386)	AURKB (ENSSTOG00000005405) #35	CTC1 (ENSSTOG00000005442) #36
Eurasian red squirrel	MODERN SPECIES	12	EIF4A1 (ENSSVLG00005016680)	CD68 (ENSSVLG00005016549) #7	MPDU1 (ENSSVLG00005016491) #8	SOX15 (ENSSVLG00005016448) #9	FXR2 (ENSSVLG00005016396) #10	SAT2 (ENSSVLG00005016345) #11	SHBG (ENSSVLG00005015979)	ATP1B2 (ENSSVLG00005015878) #13	TP53 (ENSSVLG00005015536) #14	WRAP53 (ENSSVLG00005015335) #15	EFNB3 (ENSSVLG00005015242) #16	KDM6B (ENSSVLG00005014210) #18	TMEM88 (ENSSVLG00005014138) #19	NAA38 (ENSSVLG00005014059) #20	CYB5D1 (ENSSVLG00005013988) #21	CHD3 (ENSSVLG00005013898) #22	RNF227 (ENSSVLG00005013817) #23	KCNAB3 (ENSSVLG00005013744) #24	TRAPPC1 (ENSSVLG00005013628) #25	CNTROB (ENSSVLG00005013509) #26	ENSSVLG00005013370	ENSSVLG00005013313	ENSSVLG00005013286	ENSSVLG00005013227	ENSSVLG00005013152	GUCY2D (ENSSVLG00005013065) #27	ALOX15B (ENSSVLG00005012592) #28	ALOX12B (ENSSVLG00005012389) #29	ALOXE3 (ENSSVLG00005012344) #30	HES7 (ENSSVLG00005012279) #31	PER1 (ENSSVLG00005012222) #32