Murinae	ANCESTRAL SPECIES	15	ENSGT00940000161195 #9	ENSGT00940000155828.g.a #10	ENSGT00870000137755	ENSGT00940000155828.h ##10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856.d #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #25	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C #29	ENSGT00530000063615.b #30	ENSGT00390000013732 #31	ENSGT00390000011740 #32	ENSGT00940000162102 #33	ENSGT00950000183135.A.b #34	ENSGT00390000016855 #35	ENSGT00390000009595.b #36	ENSGT00940000162059 #37
Mus	ANCESTRAL SPECIES	6	ENSGT00940000161195 #9	ENSGT00940000155828.g.a #10	ENSGT00870000137755	ENSGT00940000155828.h ##10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856.d #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #25	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C #29	ENSGT00530000063615.b #30	ENSGT00390000013732 #31	ENSGT00390000011740 #32	ENSGT00940000162102 #33	ENSGT00950000183135.A.b #34	ENSGT00390000016855 #35	ENSGT00390000009595.b #36	ENSGT00940000162059 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000160152 #8	ENSGT00940000161195 #9	ENSGT00940000155828.g.a #10	ENSGT00870000137755	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856.d #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #25	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C #29	ENSGT00530000063615.b #30	ENSGT00390000013732 #31	ENSGT00390000011740 #32	ENSGT00940000162102 #33	ENSGT00950000183135.A.b #34	ENSGT00390000016855 #35	ENSGT00390000009595.b #36	ENSGT00940000162059 #37
Ryukyu mouse	MODERN SPECIES	17	Best2 (MGP_CAROLIEiJ_G0031323) #7	Hook2 (MGP_CAROLIEiJ_G0031322) #8	Junb (MGP_CAROLIEiJ_G0031321) #9	Prdx2 (MGP_CAROLIEiJ_G0031320) #10	MGP_CAROLIEiJ_G0031319 #11	Rtbdn (MGP_CAROLIEiJ_G0031318) #12	Mast1 (MGP_CAROLIEiJ_G0031317) #13	Dnase2a (MGP_CAROLIEiJ_G0031316) #14	Klf1 (MGP_CAROLIEiJ_G0031315) #15	Gcdh (MGP_CAROLIEiJ_G0031314) #16	Syce2 (MGP_CAROLIEiJ_G0031313) #17	Farsa (MGP_CAROLIEiJ_G0031312) #18	Calr (MGP_CAROLIEiJ_G0031311) #19	Rad23a (MGP_CAROLIEiJ_G0031310) #20	Gadd45gip1 (MGP_CAROLIEiJ_G0031309) #21	Dand5 (MGP_CAROLIEiJ_G0031308) #22	MGP_CAROLIEiJ_G0031307 #23	Lyl1 (MGP_CAROLIEiJ_G0031306) #24	Nfix (MGP_CAROLIEiJ_G0031305) #25	Trmt1 (MGP_CAROLIEiJ_G0031304) #26	Nacc1 (MGP_CAROLIEiJ_G0031303) #27	Ier2 (MGP_CAROLIEiJ_G0031302) #28	Cacna1a (MGP_CAROLIEiJ_G0031301) #29	MGP_CAROLIEiJ_G0031300 #30	Mri1 (MGP_CAROLIEiJ_G0031299) #31	D8Ertd738e (MGP_CAROLIEiJ_G0031298) #32	Zswim4 (MGP_CAROLIEiJ_G0031297) #33	Nanos3 (MGP_CAROLIEiJ_G0031296) #34	Brme1 (MGP_CAROLIEiJ_G0031295) #35	Cc2d1a (MGP_CAROLIEiJ_G0031294) #36	Podnl1 (MGP_CAROLIEiJ_G0031293) #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000160152 #8	ENSGT00940000161195 #9	ENSGT00940000155828.g.a #10	ENSGT00870000137755	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856.d #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #25	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C #29	ENSGT00530000063615.b #30	ENSGT00390000013732 #31	ENSGT00390000011740 #32	ENSGT00940000162102 #33	ENSGT00950000183135.A.b #34	ENSGT00390000016855 #35	ENSGT00390000009595.b #36	ENSGT00940000162059 #37
Mouse	MODERN SPECIES	17	Hook2 (ENSMUSG00000052566) #8	Junb (ENSMUSG00000052837) #9	Prdx2 (ENSMUSG00000005161) #10	Gm49661 (ENSMUSG00000111184)	Rnaseh2a (ENSMUSG00000052926) #11	Rtbdn (ENSMUSG00000048617) #12	Mast1 (ENSMUSG00000053693) #13	Dnase2a (ENSMUSG00000003812) #14	Klf1 (ENSMUSG00000054191) #15	Gcdh (ENSMUSG00000003809) #16	Syce2 (ENSMUSG00000003824) #17	Farsa (ENSMUSG00000003808) #18	Calr (ENSMUSG00000003814) #19	Rad23a (ENSMUSG00000003813) #20	Gadd45gip1 (ENSMUSG00000033751) #21	Dand5 (ENSMUSG00000053226) #22	Lyl1 (ENSMUSG00000034041) #24	Nfix (ENSMUSG00000001911) #25	Trmt1 (ENSMUSG00000001909) #26	Nacc1 (ENSMUSG00000001910) #27	Ier2 (ENSMUSG00000053560) #28	Cacna1a (ENSMUSG00000034656) #29	Ccdc130 (ENSMUSG00000004994) #30	Mri1 (ENSMUSG00000004996) #31	D8Ertd738e (ENSMUSG00000019362) #32	Zswim4 (ENSMUSG00000035671) #33	Nanos3 (ENSMUSG00000056155) #34	Brme1 (ENSMUSG00000008129) #35	Cc2d1a (ENSMUSG00000036686) #36	Podnl1 (ENSMUSG00000012889) #37	Dcaf15 (ENSMUSG00000037103)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000155828.g.a #10	ENSGT00870000137755	ENSGT00940000155828.h ##10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856.d #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00940000157455.z	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #25	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C #29	ENSGT00530000063615.b #30	ENSGT00390000013732 #31	ENSGT00390000011740 #32	ENSGT00940000162102 #33	ENSGT00950000183135.A.b #34	ENSGT00390000016855 #35	ENSGT00390000009595.b #36	ENSGT00940000162059 #37
Steppe mouse	MODERN SPECIES	2800	Junb (ENSMSIG00000013671) #9	Prdx2 (ENSMSIG00000013681) #10	Gm49661 (ENSMSIG00000013769)	Rnaseh2a (ENSMSIG00000013788) #11	Rtbdn (ENSMSIG00000013845) #12	ENSMSIG00000013886 #13	Dnase2a (ENSMSIG00000013905) #14	Klf1 (ENSMSIG00000013957) #15	Gcdh (ENSMSIG00000013969) #16	Syce2 (ENSMSIG00000013998) #17	Farsa (ENSMSIG00000014035) #18	ENSMSIG00000014114	ENSMSIG00000014123 #19	Rad23a (ENSMSIG00000014128) #20	Gadd45gip1 (ENSMSIG00000014154) #21	Dand5 (ENSMSIG00000014166) #22	Nfix (ENSMSIG00000014176) #25	ENSMSIG00000014268	Lyl1 (ENSMSIG00000014285) #24	Trmt1 (ENSMSIG00000014300) #26	ENSMSIG00000014409 #27	Ier2 (ENSMSIG00000014426) #28
spretus	MODERN SPECIES	17	Hook2 (MGP_SPRETEiJ_G0032441) #8	Junb (MGP_SPRETEiJ_G0032440) #9	MGP_SPRETEiJ_G0032439 ##10	Rnaseh2a (MGP_SPRETEiJ_G0032438) #11	Rtbdn (MGP_SPRETEiJ_G0032437) #12	Mast1 (MGP_SPRETEiJ_G0032436) #13	Dnase2a (MGP_SPRETEiJ_G0032435) #14	Klf1 (MGP_SPRETEiJ_G0032434) #15	Gcdh (MGP_SPRETEiJ_G0032433) #16	Syce2 (MGP_SPRETEiJ_G0032432) #17	Farsa (MGP_SPRETEiJ_G0032431) #18	MGP_SPRETEiJ_G0032430	Calr (MGP_SPRETEiJ_G0032429) #19	Rad23a (MGP_SPRETEiJ_G0032428) #20	Gadd45gip1 (MGP_SPRETEiJ_G0032427) #21	Dand5 (MGP_SPRETEiJ_G0032426) #22	MGP_SPRETEiJ_G0032425	Lyl1 (MGP_SPRETEiJ_G0032424) #24	Nfix (MGP_SPRETEiJ_G0032423) #25	Trmt1 (MGP_SPRETEiJ_G0032422) #26	MGP_SPRETEiJ_G0032421 #27	Ier2 (MGP_SPRETEiJ_G0032420) #28	Cacna1a (MGP_SPRETEiJ_G0032419) #29	Ccdc130 (MGP_SPRETEiJ_G0032418) #30	Mri1 (MGP_SPRETEiJ_G0032417) #31	D8Ertd738e (MGP_SPRETEiJ_G0032416) #32	Zswim4 (MGP_SPRETEiJ_G0032415) #33	Nanos3 (MGP_SPRETEiJ_G0032414) #34	Brme1 (MGP_SPRETEiJ_G0032413) #35	Cc2d1a (MGP_SPRETEiJ_G0032412) #36	Podnl1 (MGP_SPRETEiJ_G0032411) #37
Shrew mouse	MODERN SPECIES	12	Best2 (MGP_PahariEiJ_G0022928) #7	Hook2 (MGP_PahariEiJ_G0022927) #8	Junb (MGP_PahariEiJ_G0022926) #9	MGP_PahariEiJ_G0022925 ##10	Rnaseh2a (MGP_PahariEiJ_G0022924) #11	MGP_PahariEiJ_G0022923 #12	Mast1 (MGP_PahariEiJ_G0022922) #13	Dnase2a (MGP_PahariEiJ_G0022921) #14	Klf1 (MGP_PahariEiJ_G0022920) #15	Gcdh (MGP_PahariEiJ_G0022919) #16	Syce2 (MGP_PahariEiJ_G0022918) #17	Farsa (MGP_PahariEiJ_G0022917) #18	Calr (MGP_PahariEiJ_G0022916) #19	Rad23a (MGP_PahariEiJ_G0022915) #20	Gadd45gip1 (MGP_PahariEiJ_G0022914) #21	Dand5 (MGP_PahariEiJ_G0022913) #22	Nfix (MGP_PahariEiJ_G0022912) #25	Lyl1 (MGP_PahariEiJ_G0022911) #24	Nacc1 (MGP_PahariEiJ_G0022909) #27	Ier2 (MGP_PahariEiJ_G0022908) #28	Cacna1a (MGP_PahariEiJ_G0022907) #29	Ccdc130 (MGP_PahariEiJ_G0022906) #30	Mri1 (MGP_PahariEiJ_G0022905) #31	D8Ertd738e (MGP_PahariEiJ_G0022904) #32	Zswim4 (MGP_PahariEiJ_G0022903) #33	Nanos3 (MGP_PahariEiJ_G0022902) #34	Brme1 (MGP_PahariEiJ_G0022901) #35	Cc2d1a (MGP_PahariEiJ_G0022900) #36	Podnl1 (MGP_PahariEiJ_G0022899) #37	Dcaf15 (MGP_PahariEiJ_G0022898)	Rfx1 (MGP_PahariEiJ_G0022897)
Rat	MODERN SPECIES	10	Get3 (ENSRNOG00000003747)	Best2 (ENSRNOG00000003737) #7	Hook2 (ENSRNOG00000003682) #8	Prdx2 (ENSRNOG00000003520) #10	Thsd8 (ENSRNOG00000003504)	Rnaseh2a (ENSRNOG00000068063) #11	Rtbdn (ENSRNOG00000043215) #12	MAST1 (ENSRNOG00000003469) #13	Dnase2 (ENSRNOG00000023830) #14	Klf1 (ENSRNOG00000003443) #15	Gcdh (ENSRNOG00000003307) #16	Farsa (ENSRNOG00000003149) #18	Calr (ENSRNOG00000003029) #19	Rad23a (ENSRNOG00000003026) #20	Gadd45gip1 (ENSRNOG00000003011) #21	Dand5 (ENSRNOG00000033368) #22	Nfix (ENSRNOG00000002983) #25	Lyl1 (ENSRNOG00000002950) #24	Trmt1 (ENSRNOG00000002914) #26	Nacc1 (ENSRNOG00000002864) #27	Ier2 (ENSRNOG00000067274) #28	Cacna1a (ENSRNOG00000052707) #29	Yju2b (ENSRNOG00000008319) #30	Mri1 (ENSRNOG00000026211) #31	LOC288913 (ENSRNOG00000049931) #32	Nanos3 (ENSRNOG00000031593) #34	Brme1 (ENSRNOG00000025796) #35	Cc2d1a (ENSRNOG00000006747) #36	Podnl1 (ENSRNOG00000006741) #37	Dcaf15 (ENSRNOG00000006551)	Rfx1 (ENSRNOG00000006049)