Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000160152	ENSGT00940000161195 #7	ENSGT00940000155828.g.a #8	ENSGT00870000137755 #9	ENSGT00390000010768 #10	ENSGT00950000183144.B #11	ENSGT00940000157700 #12	ENSGT00390000002634.a #13	ENSGT00940000161856.d #14	ENSGT00940000158116 #15	ENSGT00390000004872 #16	ENSGT00390000006387 #17	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639 #24	ENSGT00940000162404 #25	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000160152	ENSGT00940000161195 #7	ENSGT00940000155828.g.a #8	ENSGT00870000137755 #9	ENSGT00390000010768 #10	ENSGT00950000183144.B #11	ENSGT00940000157700 #12	ENSGT00390000002634.a #13	ENSGT00940000161856.d #14	ENSGT00940000158116 #15	ENSGT00390000004872 #16	ENSGT00390000006387 #17	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639 #24	ENSGT00940000162404 #25	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000155828.g.a #8	ENSGT00870000137755 #9	ENSGT00940000155828.h ##8	ENSGT00390000010768 #10	ENSGT00950000183144.B #11	ENSGT00940000157700 #12	ENSGT00390000002634.a #13	ENSGT00940000161856.d #14	ENSGT00940000158116 #15	ENSGT00390000004872 #16	ENSGT00390000006387 #17	ENSGT00940000157455.z #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639 #24	ENSGT00940000162404 #25	ENSGT00530000063646.b #26	ENSGT00940000159327 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Steppe mouse	MODERN SPECIES	2800	Junb (ENSMSIG00000013671) #7	Prdx2 (ENSMSIG00000013681) #8	Gm49661 (ENSMSIG00000013769) #9	Rnaseh2a (ENSMSIG00000013788) #10	Rtbdn (ENSMSIG00000013845) #11	ENSMSIG00000013886 #12	Dnase2a (ENSMSIG00000013905) #13	Klf1 (ENSMSIG00000013957) #14	Gcdh (ENSMSIG00000013969) #15	Syce2 (ENSMSIG00000013998) #16	Farsa (ENSMSIG00000014035) #17	ENSMSIG00000014114 #18	ENSMSIG00000014123 #19	Rad23a (ENSMSIG00000014128) #20	Gadd45gip1 (ENSMSIG00000014154) #21	Dand5 (ENSMSIG00000014166) #22	Nfix (ENSMSIG00000014176) #23	ENSMSIG00000014268 #24	Lyl1 (ENSMSIG00000014285) #25	Trmt1 (ENSMSIG00000014300) #26	ENSMSIG00000014409 #27	Ier2 (ENSMSIG00000014426) #28
spretus	MODERN SPECIES	17	Hook2 (MGP_SPRETEiJ_G0032441)	Junb (MGP_SPRETEiJ_G0032440) #7	MGP_SPRETEiJ_G0032439 ##8	Rnaseh2a (MGP_SPRETEiJ_G0032438) #10	Rtbdn (MGP_SPRETEiJ_G0032437) #11	Mast1 (MGP_SPRETEiJ_G0032436) #12	Dnase2a (MGP_SPRETEiJ_G0032435) #13	Klf1 (MGP_SPRETEiJ_G0032434) #14	Gcdh (MGP_SPRETEiJ_G0032433) #15	Syce2 (MGP_SPRETEiJ_G0032432) #16	Farsa (MGP_SPRETEiJ_G0032431) #17	MGP_SPRETEiJ_G0032430 #18	Calr (MGP_SPRETEiJ_G0032429) #19	Rad23a (MGP_SPRETEiJ_G0032428) #20	Gadd45gip1 (MGP_SPRETEiJ_G0032427) #21	Dand5 (MGP_SPRETEiJ_G0032426) #22	MGP_SPRETEiJ_G0032425 #24	Lyl1 (MGP_SPRETEiJ_G0032424) #25	Nfix (MGP_SPRETEiJ_G0032423) #23	Trmt1 (MGP_SPRETEiJ_G0032422) #26	MGP_SPRETEiJ_G0032421 #27	Ier2 (MGP_SPRETEiJ_G0032420) #28	Cacna1a (MGP_SPRETEiJ_G0032419)	Ccdc130 (MGP_SPRETEiJ_G0032418)	Mri1 (MGP_SPRETEiJ_G0032417)	D8Ertd738e (MGP_SPRETEiJ_G0032416)	Zswim4 (MGP_SPRETEiJ_G0032415)	Nanos3 (MGP_SPRETEiJ_G0032414)	Brme1 (MGP_SPRETEiJ_G0032413)	Cc2d1a (MGP_SPRETEiJ_G0032412)	Podnl1 (MGP_SPRETEiJ_G0032411)
Mouse	MODERN SPECIES	17	Hook2 (ENSMUSG00000052566)	Junb (ENSMUSG00000052837) #7	Prdx2 (ENSMUSG00000005161) #8	Gm49661 (ENSMUSG00000111184) #9	Rnaseh2a (ENSMUSG00000052926) #10	Rtbdn (ENSMUSG00000048617) #11	Mast1 (ENSMUSG00000053693) #12	Dnase2a (ENSMUSG00000003812) #13	Klf1 (ENSMUSG00000054191) #14	Gcdh (ENSMUSG00000003809) #15	Syce2 (ENSMUSG00000003824) #16	Farsa (ENSMUSG00000003808) #17	Calr (ENSMUSG00000003814) #19	Rad23a (ENSMUSG00000003813) #20	Gadd45gip1 (ENSMUSG00000033751) #21	Dand5 (ENSMUSG00000053226) #22	Lyl1 (ENSMUSG00000034041) #25	Nfix (ENSMUSG00000001911) #23	Trmt1 (ENSMUSG00000001909) #26	Nacc1 (ENSMUSG00000001910) #27	Ier2 (ENSMUSG00000053560) #28	Cacna1a (ENSMUSG00000034656)	Ccdc130 (ENSMUSG00000004994)	Mri1 (ENSMUSG00000004996)	D8Ertd738e (ENSMUSG00000019362)	Zswim4 (ENSMUSG00000035671)	Nanos3 (ENSMUSG00000056155)	Brme1 (ENSMUSG00000008129)	Cc2d1a (ENSMUSG00000036686)	Podnl1 (ENSMUSG00000012889)	Dcaf15 (ENSMUSG00000037103)
Ryukyu mouse	MODERN SPECIES	17	Best2 (MGP_CAROLIEiJ_G0031323)	Hook2 (MGP_CAROLIEiJ_G0031322)	Junb (MGP_CAROLIEiJ_G0031321) #7	Prdx2 (MGP_CAROLIEiJ_G0031320) #8	MGP_CAROLIEiJ_G0031319 #10	Rtbdn (MGP_CAROLIEiJ_G0031318) #11	Mast1 (MGP_CAROLIEiJ_G0031317) #12	Dnase2a (MGP_CAROLIEiJ_G0031316) #13	Klf1 (MGP_CAROLIEiJ_G0031315) #14	Gcdh (MGP_CAROLIEiJ_G0031314) #15	Syce2 (MGP_CAROLIEiJ_G0031313) #16	Farsa (MGP_CAROLIEiJ_G0031312) #17	Calr (MGP_CAROLIEiJ_G0031311) #19	Rad23a (MGP_CAROLIEiJ_G0031310) #20	Gadd45gip1 (MGP_CAROLIEiJ_G0031309) #21	Dand5 (MGP_CAROLIEiJ_G0031308) #22	MGP_CAROLIEiJ_G0031307	Lyl1 (MGP_CAROLIEiJ_G0031306) #25	Nfix (MGP_CAROLIEiJ_G0031305) #23	Trmt1 (MGP_CAROLIEiJ_G0031304) #26	Nacc1 (MGP_CAROLIEiJ_G0031303) #27	Ier2 (MGP_CAROLIEiJ_G0031302) #28	Cacna1a (MGP_CAROLIEiJ_G0031301)	MGP_CAROLIEiJ_G0031300	Mri1 (MGP_CAROLIEiJ_G0031299)	D8Ertd738e (MGP_CAROLIEiJ_G0031298)	Zswim4 (MGP_CAROLIEiJ_G0031297)	Nanos3 (MGP_CAROLIEiJ_G0031296)	Brme1 (MGP_CAROLIEiJ_G0031295)	Cc2d1a (MGP_CAROLIEiJ_G0031294)	Podnl1 (MGP_CAROLIEiJ_G0031293)