Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00870000137755 #10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00940000163101 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00870000137755 #10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00940000163101 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33	ENSGT00390000009595.b
Marmotini	ANCESTRAL SPECIES	41	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00870000137755 #10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00940000163101 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33	ENSGT00390000009595.b
Alpin marmot	MODERN SPECIES	24	HOOK2 (ENSMMMG00000020811) #7	JUNB (ENSMMMG00000020869) #8	ENSMMMG00000020873 #9	THSD8 (ENSMMMG00000020877) #10	RNASEH2A (ENSMMMG00000020879) #11	RTBDN (ENSMMMG00000020903) #12	MAST1 (ENSMMMG00000020911) #13	DNASE2 (ENSMMMG00000020947) #14	KLF1 (ENSMMMG00000020960) #15	GCDH (ENSMMMG00000020963) #16	SYCE2 (ENSMMMG00000020981) #17	FARSA (ENSMMMG00000020996) #18	CALR (ENSMMMG00000021010) #19	ENSMMMG00000021016 #20	GADD45GIP1 (ENSMMMG00000021032) #21	DAND5 (ENSMMMG00000021038) #22	NFIX (ENSMMMG00000021044) #23	LYL1 (ENSMMMG00000021069) #24	TRMT1 (ENSMMMG00000021080) #25	NACC1 (ENSMMMG00000021510) #26	STX10 (ENSMMMG00000021518) #27	ENSMMMG00000021534 #28	YJU2B (ENSMMMG00000021549) #29	ENSMMMG00000021583 #30	ZSWIM4 (ENSMMMG00000021589) #31	NANOS3 (ENSMMMG00000021601) #32	ENSMMMG00000021612 #33	PODNL1 (ENSMMMG00000021701) #34	DCAF15 (ENSMMMG00000021706) #35	RFX1 (ENSMMMG00000021740) #36	RLN3 (ENSMMMG00000021867) #37
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00870000137755 #10	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00860000135639	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00940000163101 #27	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33	ENSGT00390000009595.b
Arctic ground squirrel	MODERN SPECIES	217	HOOK2 (ENSUPAG00010007823) #7	JUNB (ENSUPAG00010007878) #8	ENSUPAG00010007882 #9	THSD8 (ENSUPAG00010007901) #10	RNASEH2A (ENSUPAG00010007909) #11	RTBDN (ENSUPAG00010007981) #12	MAST1 (ENSUPAG00010007994) #13	DNASE2 (ENSUPAG00010008053) #14	KLF1 (ENSUPAG00010008092) #15	GCDH (ENSUPAG00010008102) #16	SYCE2 (ENSUPAG00010008135) #17	FARSA (ENSUPAG00010008158) #18	CALR (ENSUPAG00010008184) #19	RAD23A (ENSUPAG00010008197) #20	GADD45GIP1 (ENSUPAG00010008222) #21	DAND5 (ENSUPAG00010008227) #22	NFIX (ENSUPAG00010008230) #23	ENSUPAG00010008329	LYL1 (ENSUPAG00010008333) #24	TRMT1 (ENSUPAG00010008343) #25	NACC1 (ENSUPAG00010008354) #26	STX10 (ENSUPAG00010008362) #27	IER2 (ENSUPAG00010008375) #28	CACNA1A (ENSUPAG00010008388)	YJU2B (ENSUPAG00010011639) #29	MRI1 (ENSUPAG00010011651)	C19orf53 (ENSUPAG00010011656)	ZSWIM4 (ENSUPAG00010011666) #31	NANOS3 (ENSUPAG00010011697) #32	BRME1 (ENSUPAG00010011699) #33	CC2D1A (ENSUPAG00010011706)
Squirrel	MODERN SPECIES	259	BEST2 (ENSSTOG00000019471)	HOOK2 (ENSSTOG00000011709) #7	JUNB (ENSSTOG00000031929) #8	ENSSTOG00000025862 #9	RNASEH2A (ENSSTOG00000006224) #11	Rtbdn (ENSSTOG00000006228) #12	MAST1 (ENSSTOG00000008668) #13	DNASE2 (ENSSTOG00000008712) #14	KLF1 (ENSSTOG00000021956) #15	GCDH (ENSSTOG00000008724) #16	SYCE2 (ENSSTOG00000008737) #17	FARSA (ENSSTOG00000008748) #18	CALR (ENSSTOG00000008774) #19	RAD23A (ENSSTOG00000024117) #20	GADD45GIP1 (ENSSTOG00000016419) #21	DAND5 (ENSSTOG00000016420) #22	NFIX (ENSSTOG00000007848) #23	LYL1 (ENSSTOG00000028401) #24	TRMT1 (ENSSTOG00000012531) #25	NACC1 (ENSSTOG00000007865) #26	STX10 (ENSSTOG00000007880) #27	IER2 (ENSSTOG00000007900) #28	CACNA1A (ENSSTOG00000024862)	YJU2B (ENSSTOG00000006281) #29	MRI1 (ENSSTOG00000020750)	C19orf53 (ENSSTOG00000011602)	ZSWIM4 (ENSSTOG00000021055) #31	NANOS3 (ENSSTOG00000024797) #32	BRME1 (ENSSTOG00000028732) #33	CC2D1A (ENSSTOG00000019980)	PODNL1 (ENSSTOG00000021014) #34
Eurasian red squirrel	MODERN SPECIES	7	HOOK2 (ENSSVLG00005025297) #7	JUNB (ENSSVLG00005025317) #8	PRDX2 (ENSSVLG00005016837) #9	THSD8 (ENSSVLG00005016905) #10	RNASEH2A (ENSSVLG00005016950) #11	RTBDN (ENSSVLG00005016997) #12	MAST1 (ENSSVLG00005017111) #13	DNASE2 (ENSSVLG00005017585) #14	KLF1 (ENSSVLG00005017619) #15	GCDH (ENSSVLG00005017674) #16	ENSSVLG00005017827 #17	FARSA (ENSSVLG00005017880) #18	CALR (ENSSVLG00005017951) #19	RAD23A (ENSSVLG00005018009) #20	GADD45GIP1 (ENSSVLG00005018098) #21	DAND5 (ENSSVLG00005018136) #22	NFIX (ENSSVLG00005018211) #23	LYL1 (ENSSVLG00005018485) #24	TRMT1 (ENSSVLG00005018534) #25	NACC1 (ENSSVLG00005018614) #26	STX10 (ENSSVLG00005018658) #27	IER2 (ENSSVLG00005018745) #28	CACNA1A (ENSSVLG00005020388)	ENSSVLG00005024893	ENSSVLG00005024924	ENSSVLG00005024939	ENSSVLG00005024956	YJU2B (ENSSVLG00005024977) #29	MRI1 (ENSSVLG00005025000)	C19orf53 (ENSSVLG00005025010)	ZSWIM4 (ENSSVLG00005025031) #31
Hystricomorpha	ANCESTRAL SPECIES	55	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a.l #19	ENSGT00950000182915.b.b.a.a.k.b #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33	ENSGT00390000009595.b	ENSGT00940000162059 #34
Naked mole-rat female	MODERN SPECIES	21	TNPO2 (ENSHGLG00000016928)	ENSHGLG00000044320	GET3 (ENSHGLG00000010735)	BEST2 (ENSHGLG00000016965)	HOOK2 (ENSHGLG00000017395) #7	ENSHGLG00000018801 #13	ENSHGLG00000043972	DNASE2 (ENSHGLG00000016378) #14	KLF1 (ENSHGLG00000015876) #15	GCDH (ENSHGLG00000006522) #16	ENSHGLG00000046129 #17	ENSHGLG00000043005	CALR (ENSHGLG00000009088) #19	RAD23A (ENSHGLG00000044031) #20	ENSHGLG00000005609 #21	DAND5 (ENSHGLG00000040694) #22	ENSHGLG00000045273	NFIX (ENSHGLG00000010071) #23	LYL1 (ENSHGLG00000046929) #24	NACC1 (ENSHGLG00000008369) #26	ENSHGLG00000050447 #25	IER2 (ENSHGLG00000050933) #28	YJU2B (ENSHGLG00000008180) #29	MRI1 (ENSHGLG00000010969)	C19orf53 (ENSHGLG00000035084)	ZSWIM4 (ENSHGLG00000019264) #31	NANOS3 (ENSHGLG00000019378) #32	ENSHGLG00000003199 #33	PODNL1 (ENSHGLG00000008104) #34	DCAF15 (ENSHGLG00000010729) #35	RFX1 (ENSHGLG00000013500) #36
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a.l #19	ENSGT00950000182915.b.b.a.a.k.b #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33	ENSGT00390000009595.b	ENSGT00940000162059 #34	ENSGT00390000011987 #35
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000160152 #7	ENSGT00940000161195 #8	ENSGT00940000155828 #9	ENSGT00390000010768 #11	ENSGT00950000183144.B #12	ENSGT00940000157700 #13	ENSGT00390000002634.a #14	ENSGT00940000161856 #15	ENSGT00940000158116 #16	ENSGT00390000004872 #17	ENSGT00390000006387 #18	ENSGT00950000182915.b.b.a.a.l #19	ENSGT00950000182915.b.b.a.a.k.b #19	ENSGT00390000012078.a.b #20	ENSGT00390000013719 #21	ENSGT00530000063926.b #22	ENSGT00950000182916.a.b.a.a.a.b.b #23	ENSGT00940000162404 #24	ENSGT00530000063646.b #25	ENSGT00940000159327 #26	ENSGT00900000141021.b.b #28	ENSGT00940000156518.C	ENSGT00530000063615.b #29	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102 #31	ENSGT00950000183135.A.b #32	ENSGT00390000016855 #33	ENSGT00390000009595.b	ENSGT00940000162059 #34	ENSGT00390000011987 #35
Long-tailed chinchilla	MODERN SPECIES	122	BEST2 (ENSCLAG00000012820)	HOOK2 (ENSCLAG00000012972) #7	JUNB (ENSCLAG00000018028) #8	PRDX2 (ENSCLAG00000013924) #9	RNASEH2A (ENSCLAG00000014930) #11	RTBDN (ENSCLAG00000014391) #12	MAST1 (ENSCLAG00000012224) #13	DNASE2 (ENSCLAG00000012983) #14	KLF1 (ENSCLAG00000013218) #15	GCDH (ENSCLAG00000015590) #16	SYCE2 (ENSCLAG00000014420) #17	FARSA (ENSCLAG00000015489) #18	CALR (ENSCLAG00000012923) #19	RAD23A (ENSCLAG00000016638) #20	GADD45GIP1 (ENSCLAG00000015799) #21	DAND5 (ENSCLAG00000011402) #22	NFIX (ENSCLAG00000013479) #23	LYL1 (ENSCLAG00000014483) #24	TRMT1 (ENSCLAG00000015295) #25	NACC1 (ENSCLAG00000016122) #26	IER2 (ENSCLAG00000015309) #28	CACNA1A (ENSCLAG00000013282)	YJU2B (ENSCLAG00000011790) #29	MRI1 (ENSCLAG00000013025)	C19orf53 (ENSCLAG00000011489)	ZSWIM4 (ENSCLAG00000011642) #31	NANOS3 (ENSCLAG00000015139) #32	ENSCLAG00000015002 #33	CC2D1A (ENSCLAG00000012998)	PODNL1 (ENSCLAG00000013361) #34	DCAF15 (ENSCLAG00000015146) #35