Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Marmotini	ANCESTRAL SPECIES	1	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Alpin marmot	MODERN SPECIES	83	ENSMMMG00000006686 #7	RRAGA (ENSMMMG00000006689) #8	SAXO1 (ENSMMMG00000006694) #9	ENSMMMG00000006707 #10	ADAMTSL1 (ENSMMMG00000006719) #11	ENSMMMG00000006805 #12	SH3GL2 (ENSMMMG00000006807) #13	CNTLN (ENSMMMG00000006867) #14	BNC2 (ENSMMMG00000006931) #15	CCDC171 (ENSMMMG00000007048) #16	PSIP1 (ENSMMMG00000007110) #17	SNAPC3 (ENSMMMG00000007194) #18	ENSMMMG00000007221 #19	TTC39B (ENSMMMG00000007232) #20	FREM1 (ENSMMMG00000007262) #21	CER1 (ENSMMMG00000007339) #22	ZDHHC21 (ENSMMMG00000007346) #23	NFIB (ENSMMMG00000007378) #24	ENSMMMG00000007584 #25	ENSMMMG00000007595 #26	MPDZ (ENSMMMG00000007606) #27
Marmotini_b	ANCESTRAL SPECIES	118	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Arctic ground squirrel	MODERN SPECIES	200										BNC2 (ENSUPAG00010019192) #15	CCDC171 (ENSUPAG00010019240) #16	PSIP1 (ENSUPAG00010019272) #17	SNAPC3 (ENSUPAG00010019316) #18	TTC39B (ENSUPAG00010019335) #20	FREM1 (ENSUPAG00010019362) #21	CER1 (ENSUPAG00010019407) #22	ZDHHC21 (ENSUPAG00010019414) #23	NFIB (ENSUPAG00010019428) #24	MPDZ (ENSUPAG00010019555) #27
Eurasian red squirrel	MODERN SPECIES	6	RRAGA (ENSSVLG00005022081) #8	SAXO1 (ENSSVLG00005021951) #9	ADAMTSL1 (ENSSVLG00005021790) #11	ENSSVLG00005021741	SH3GL2 (ENSSVLG00005021671) #13	CNTLN (ENSSVLG00005021621) #14	ENSSVLG00005021593	BNC2 (ENSSVLG00005021503) #15	CCDC171 (ENSSVLG00005021247) #16	PSIP1 (ENSSVLG00005021148) #17	SNAPC3 (ENSSVLG00005021073) #18	ENSSVLG00005021059	TTC39B (ENSSVLG00005020698) #20	ENSSVLG00005020502 #21	ENSSVLG00005020385 #21	CER1 (ENSSVLG00005020347) #22	ZDHHC21 (ENSSVLG00005020275) #23	NFIB (ENSSVLG00005019808) #24	ENSSVLG00005019293	MPDZ (ENSSVLG00005019125) #27	LURAP1L (ENSSVLG00005019004)	TYRP1 (ENSSVLG00005018842)	ENSSVLG00005018805	ENSSVLG00005018792	PTPRD (ENSSVLG00005016434)	ENSSVLG00005016242	DMAC1 (ENSSVLG00005016213)	ENSSVLG00005025401	KDM4C (ENSSVLG00005025382)	ENSSVLG00005025367	ENSSVLG00005025356
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243.jb #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243.jb #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243.jb #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Long-tailed chinchilla	MODERN SPECIES	141	ENSCLAG00000009131	DENND4C (ENSCLAG00000007655)	PLIN2 (ENSCLAG00000006627)	HAUS6 (ENSCLAG00000015951)	RRAGA (ENSCLAG00000017884) #8	SAXO1 (ENSCLAG00000015777) #9	ADAMTSL1 (ENSCLAG00000016263) #11	SH3GL2 (ENSCLAG00000012375) #13	ENSCLAG00000010823 #14	BNC2 (ENSCLAG00000009846) #15	CCDC171 (ENSCLAG00000012226) #16	PSIP1 (ENSCLAG00000013790) #17	ENSCLAG00000010768 #18	TTC39B (ENSCLAG00000010926) #20	FREM1 (ENSCLAG00000006808) #21	CER1 (ENSCLAG00000010883) #22	ZDHHC21 (ENSCLAG00000009678) #23	NFIB (ENSCLAG00000012227) #24	MPDZ (ENSCLAG00000007286) #27	ENSCLAG00000014441	LURAP1L (ENSCLAG00000013531)	TYRP1 (ENSCLAG00000007960)	PTPRD (ENSCLAG00000005730)	DMAC1 (ENSCLAG00000007861)	KDM4C (ENSCLAG00000006468)	GLDC (ENSCLAG00000005815)	UHRF2 (ENSCLAG00000004646)	IL33 (ENSCLAG00000008507)	RANBP6 (ENSCLAG00000017716)	KIAA2026 (ENSCLAG00000010624)	MLANA (ENSCLAG00000005918)
Guinea pig	MODERN SPECIES	21	ENSCPOG00000011958	ENSCPOG00000025832	HAUS6 (ENSCPOG00000008053)	RRAGA (ENSCPOG00000008047) #8	ENSCPOG00000031962	ADAMTSL1 (ENSCPOG00000003783) #11	SH3GL2 (ENSCPOG00000015380) #13	ENSCPOG00000032617 #14	BNC2 (ENSCPOG00000006163) #15	CCDC171 (ENSCPOG00000012939) #16	ENSCPOG00000032438	PSIP1 (ENSCPOG00000005095) #17	SNAPC3 (ENSCPOG00000005081) #18	TTC39B (ENSCPOG00000004887) #20	FREM1 (ENSCPOG00000011267) #21	CER1 (ENSCPOG00000011943) #22	ZDHHC21 (ENSCPOG00000032754) #23	NFIB (ENSCPOG00000003925) #24	MPDZ (ENSCPOG00000008962) #27	LURAP1L (ENSCPOG00000037440)	TYRP1 (ENSCPOG00000014078)	PTPRD (ENSCPOG00000003625)	DMAC1 (ENSCPOG00000033539)	KDM4C (ENSCPOG00000004700)	GLDC (ENSCPOG00000004844)	UHRF2 (ENSCPOG00000004838)	IL33 (ENSCPOG00000030316)	RANBP6 (ENSCPOG00000005398)	KIAA2026 (ENSCPOG00000013437)	ENSCPOG00000039570	MLANA (ENSCPOG00000013436)
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000013333 #11	SH3GL2 (ENSHGLG00000012899) #13	CNTLN (ENSHGLG00000017883) #14	BNC2 (ENSHGLG00000009182) #15	ENSHGLG00000048786	CCDC171 (ENSHGLG00000005804) #16	ENSHGLG00000037696	ENSHGLG00000009693	PSIP1 (ENSHGLG00000010046) #17	ENSHGLG00000033501 #18	ENSHGLG00000018545 #20	ENSHGLG00000034380	ENSHGLG00000017979	ENSHGLG00000017971 #21	ENSHGLG00000039407	CER1 (ENSHGLG00000017945) #22	ENSHGLG00000050241 #23	NFIB (ENSHGLG00000010895) #24	ENSHGLG00000005821	MPDZ (ENSHGLG00000016510) #27	ENSHGLG00000031927	ENSHGLG00000016836	LURAP1L (ENSHGLG00000046955)	ENSHGLG00000015404	ENSHGLG00000008769	ENSHGLG00000012054	ENSHGLG00000021417	PTPRD (ENSHGLG00000011342)	ENSHGLG00000033356	ENSHGLG00000044985	ENSHGLG00000036074
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT01030000234519.e.a.a.a.a.b	ENSGT00940000153241.A	ENSGT00390000013287	ENSGT00940000162569.b
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT01030000234519.e.a.a.a.a.b	ENSGT00940000153241.A	ENSGT00390000013287
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000169234	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001022609	Dennd4c (ENSCGRG00001004609)	Plin2 (ENSCGRG00001016267)	Saxo1 (ENSCGRG00001017278) #9	Adamtsl1 (ENSCGRG00001004761) #11	Sh3gl2 (ENSCGRG00001022450) #13	Cntln (ENSCGRG00001005303) #14	ENSCGRG00001006130	Bnc2 (ENSCGRG00001021192) #15	Ccdc171 (ENSCGRG00001012100) #16	Psip1 (ENSCGRG00001018077) #17	Snapc3 (ENSCGRG00001021052) #18	Ttc39b (ENSCGRG00001023116) #20	ENSCGRG00001006351	Frem1 (ENSCGRG00001012504) #21	Cer1 (ENSCGRG00001014082) #22	Zdhhc21 (ENSCGRG00001015866) #23	Nfib (ENSCGRG00001018402) #24	Mpdz (ENSCGRG00001023758) #27	ENSCGRG00001017051	Lurap1l (ENSCGRG00001018238)	Tyrp1 (ENSCGRG00001020616)	Ptprd (ENSCGRG00001001921)	Dmac1 (ENSCGRG00001012676)	ENSCGRG00001003314	Kdm4c (ENSCGRG00001014973)	Frmd3 (ENSCGRG00001020520)	ENSCGRG00001022505	2310002L09Rik (ENSCGRG00001024634)	Rasef (ENSCGRG00001001324)	ENSCGRG00001001298
Golden Hamster	MODERN SPECIES	740							Cntln (ENSMAUG00000016827) #14	Bnc2 (ENSMAUG00000017038) #15	Ccdc171 (ENSMAUG00000013269) #16	Psip1 (ENSMAUG00000014312) #17	ENSMAUG00000008531 #18	ENSMAUG00000002025	Ttc39b (ENSMAUG00000008949) #20	ENSMAUG00000011212	Frem1 (ENSMAUG00000014922) #21	Cer1 (ENSMAUG00000013311) #22	Zdhhc21 (ENSMAUG00000000495) #23	Nfib (ENSMAUG00000007632) #24	ENSMAUG00000003146 #27	ENSMAUG00000005222 #27	Lurap1l (ENSMAUG00000014887)	Tyrp1 (ENSMAUG00000017874)	ENSMAUG00000006579
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Northern American deer mouse	MODERN SPECIES	11	Haus6 (ENSPEMG00000028376)	Rraga (ENSPEMG00000012776) #8	Saxo1 (ENSPEMG00000000040) #9	Adamtsl1 (ENSPEMG00000005320) #11	Sh3gl2 (ENSPEMG00000010691) #13	ENSPEMG00000012875	Cntln (ENSPEMG00000013809) #14	Bnc2 (ENSPEMG00000006553) #15	ENSPEMG00000026637	Ccdc171 (ENSPEMG00000009589) #16	Psip1 (ENSPEMG00000015309) #17	Snapc3 (ENSPEMG00000015671) #18	Ttc39b (ENSPEMG00000017249) #20	ENSPEMG00000028674	Frem1 (ENSPEMG00000007771) #21	Cer1 (ENSPEMG00000013498) #22	Zdhhc21 (ENSPEMG00000011202) #23	Nfib (ENSPEMG00000015036) #24	Mpdz (ENSPEMG00000002221) #27	Lurap1l (ENSPEMG00000028913)	ENSPEMG00000026523	Tyrp1 (ENSPEMG00000020081)	Ptprd (ENSPEMG00000017837)	Dmac1 (ENSPEMG00000004174)	ENSPEMG00000014283	Kdm4c (ENSPEMG00000009673)	Frmd3 (ENSPEMG00000018030)	2310002L09Rik (ENSPEMG00000011897)	Rasef (ENSPEMG00000002797)	ENSPEMG00000026811	Tle1 (ENSPEMG00000009903)
Prairie vole	MODERN SPECIES	1	Rps6 (ENSMOCG00000004590)	Dennd4c (ENSMOCG00000001944)	ENSMOCG00000014772	ENSMOCG00000023023	Saxo1 (ENSMOCG00000016102) #9	Adamtsl1 (ENSMOCG00000000817) #11	Sh3gl2 (ENSMOCG00000022289) #13	Cntln (ENSMOCG00000019830) #14	ENSMOCG00000008451	Bnc2 (ENSMOCG00000015132) #15	Ccdc171 (ENSMOCG00000016262) #16	Psip1 (ENSMOCG00000003043) #17	ENSMOCG00000014331 #18	Ttc39b (ENSMOCG00000005864) #20	Frem1 (ENSMOCG00000018942) #21	Cer1 (ENSMOCG00000022515) #22	Zdhhc21 (ENSMOCG00000015320) #23	Nfib (ENSMOCG00000021986) #24	ENSMOCG00000020921 #27	ENSMOCG00000018271 #27	Lurap1l (ENSMOCG00000015966)	Tyrp1 (ENSMOCG00000015263)	ENSMOCG00000004135	Ptprd (ENSMOCG00000001990)	ENSMOCG00000015211	ENSMOCG00000012575	ENSMOCG00000013894	Frmd3 (ENSMOCG00000008934)	2310002L09Rik (ENSMOCG00000022037)	Rasef (ENSMOCG00000000943)	Tle1 (ENSMOCG00000017405)
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577.e	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018.a.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706.u #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577.e	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018.a.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #11	ENSGT00940000160529 #13	ENSGT00440000034932 #14	ENSGT00390000005844.a.b #15	ENSGT00390000007924 #16	ENSGT00940000154706.u #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #27	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577.e	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018.a.b	ENSGT00740000117018.b	ENSGT00940000161177
spretus	MODERN SPECIES	13	Rps6 (MGP_SPRETEiJ_G0027100)	Dennd4c (MGP_SPRETEiJ_G0027099)	Plin2 (MGP_SPRETEiJ_G0027098)	Haus6 (MGP_SPRETEiJ_G0027097)	Rraga (MGP_SPRETEiJ_G0027096) #8	Saxo1 (MGP_SPRETEiJ_G0027095) #9	Adamtsl1 (MGP_SPRETEiJ_G0027094) #11	MGP_SPRETEiJ_G0027093 #13	Cntln (MGP_SPRETEiJ_G0027092) #14	Bnc2 (MGP_SPRETEiJ_G0027091) #15	Ccdc171 (MGP_SPRETEiJ_G0027090) #16	Psip1 (MGP_SPRETEiJ_G0027089) #17	Snapc3 (MGP_SPRETEiJ_G0027088) #18	Ttc39b (MGP_SPRETEiJ_G0027087) #20	Frem1 (MGP_SPRETEiJ_G0027086) #21	Cer1 (MGP_SPRETEiJ_G0027085) #22	Zdhhc21 (MGP_SPRETEiJ_G0027084) #23	Nfib (MGP_SPRETEiJ_G0027083) #24	Mpdz (MGP_SPRETEiJ_G0027082) #27	Lurap1l (MGP_SPRETEiJ_G0027081)	Tyrp1 (MGP_SPRETEiJ_G0027080)	MGP_SPRETEiJ_G0027079	Dmac1 (MGP_SPRETEiJ_G0027078)	Kdm4c (MGP_SPRETEiJ_G0027077)	Frmd3 (MGP_SPRETEiJ_G0027076)	MGP_SPRETEiJ_G0027075	Tle1 (MGP_SPRETEiJ_G0027074)	MGP_SPRETEiJ_G0027073	Megf9 (MGP_SPRETEiJ_G0027072)	Cdk5rap2 (MGP_SPRETEiJ_G0027071)	Brinp1 (MGP_SPRETEiJ_G0027070)
Steppe mouse	MODERN SPECIES	3323				Haus6 (ENSMSIG00000021584)	Rraga (ENSMSIG00000021592) #8	Saxo1 (ENSMSIG00000021596) #9	Adamtsl1 (ENSMSIG00000021606) #11	ENSMSIG00000021744 #13	Cntln (ENSMSIG00000021797) #14	Bnc2 (ENSMSIG00000021983) #15	Ccdc171 (ENSMSIG00000022141) #16	Psip1 (ENSMSIG00000022367) #17	Snapc3 (ENSMSIG00000022439) #18	Ttc39b (ENSMSIG00000022488) #20	Frem1 (ENSMSIG00000022742) #21	Cer1 (ENSMSIG00000022937) #22	Zdhhc21 (ENSMSIG00000022950) #23	Nfib (ENSMSIG00000023003) #24
Mouse	MODERN SPECIES	13	Rps6 (ENSMUSG00000028495)	Dennd4c (ENSMUSG00000038024)	Plin2 (ENSMUSG00000028494)	Haus6 (ENSMUSG00000038047)	Rraga (ENSMUSG00000070934) #8	Saxo1 (ENSMUSG00000028492) #9	Adamtsl1 (ENSMUSG00000066113) #11	Sh3gl2 (ENSMUSG00000028488) #13	Cntln (ENSMUSG00000038070) #14	Bnc2 (ENSMUSG00000028487) #15	Ccdc171 (ENSMUSG00000052407) #16	Psip1 (ENSMUSG00000028484) #17	Snapc3 (ENSMUSG00000028483) #18	Ttc39b (ENSMUSG00000038172) #20	Frem1 (ENSMUSG00000059049) #21	Cer1 (ENSMUSG00000038192) #22	Zdhhc21 (ENSMUSG00000028403) #23	Nfib (ENSMUSG00000008575) #24	Mpdz (ENSMUSG00000028402) #27	Lurap1l (ENSMUSG00000048706)	Tyrp1 (ENSMUSG00000005994)	Ptprd (ENSMUSG00000028399)	Dmac1 (ENSMUSG00000028398)	Kdm4c (ENSMUSG00000028397)	Frmd3 (ENSMUSG00000049122)	2310002L09Rik (ENSMUSG00000028396)	Gm11756 (ENSMUSG00000093962)	Gm13871 (ENSMUSG00000096333)	Gm11757 (ENSMUSG00000096750)	Gm11758 (ENSMUSG00000096530)	Rasef (ENSMUSG00000043003)
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026135	Dennd4c (MGP_CAROLIEiJ_G0026134)	Plin2 (MGP_CAROLIEiJ_G0026133)	MGP_CAROLIEiJ_G0026132	Rraga (MGP_CAROLIEiJ_G0026131) #8	Saxo1 (MGP_CAROLIEiJ_G0026130) #9	Adamtsl1 (MGP_CAROLIEiJ_G0026129) #11	Sh3gl2 (MGP_CAROLIEiJ_G0026128) #13	Cntln (MGP_CAROLIEiJ_G0026127) #14	Bnc2 (MGP_CAROLIEiJ_G0026126) #15	Ccdc171 (MGP_CAROLIEiJ_G0026125) #16	Psip1 (MGP_CAROLIEiJ_G0026124) #17	Snapc3 (MGP_CAROLIEiJ_G0026123) #18	Ttc39b (MGP_CAROLIEiJ_G0026122) #20	Frem1 (MGP_CAROLIEiJ_G0026121) #21	Cer1 (MGP_CAROLIEiJ_G0026120) #22	Zdhhc21 (MGP_CAROLIEiJ_G0026119) #23	Nfib (MGP_CAROLIEiJ_G0026118) #24	Mpdz (MGP_CAROLIEiJ_G0026117) #27	Lurap1l (MGP_CAROLIEiJ_G0026116)	Tyrp1 (MGP_CAROLIEiJ_G0026115)	Ptprd (MGP_CAROLIEiJ_G0026114)	Dmac1 (MGP_CAROLIEiJ_G0026113)	Kdm4c (MGP_CAROLIEiJ_G0026112)	Frmd3 (MGP_CAROLIEiJ_G0026111)	2310002L09Rik (MGP_CAROLIEiJ_G0026110)	MGP_CAROLIEiJ_G0026109	Tle1 (MGP_CAROLIEiJ_G0026108)	Gm11232 (MGP_CAROLIEiJ_G0026107)	Megf9 (MGP_CAROLIEiJ_G0026106)	Cdk5rap2 (MGP_CAROLIEiJ_G0026105)
Shrew mouse	MODERN SPECIES	19	MGP_PahariEiJ_G0028473	Dennd4c (MGP_PahariEiJ_G0028472)	Plin2 (MGP_PahariEiJ_G0028471)	Haus6 (MGP_PahariEiJ_G0028470)	Rraga (MGP_PahariEiJ_G0028469) #8	Saxo1 (MGP_PahariEiJ_G0028468) #9	Adamtsl1 (MGP_PahariEiJ_G0028467) #11	MGP_PahariEiJ_G0028466 #13	Cntln (MGP_PahariEiJ_G0028465) #14	Bnc2 (MGP_PahariEiJ_G0028464) #15	Ccdc171 (MGP_PahariEiJ_G0028463) #16	Psip1 (MGP_PahariEiJ_G0028462) #17	Snapc3 (MGP_PahariEiJ_G0028461) #18	Ttc39b (MGP_PahariEiJ_G0028460) #20	Frem1 (MGP_PahariEiJ_G0028459) #21	Cer1 (MGP_PahariEiJ_G0028458) #22	Zdhhc21 (MGP_PahariEiJ_G0028457) #23	Nfib (MGP_PahariEiJ_G0028456) #24	MGP_PahariEiJ_G0028455 #27	Lurap1l (MGP_PahariEiJ_G0028454)	Tyrp1 (MGP_PahariEiJ_G0028453)	Ptprd (MGP_PahariEiJ_G0028452)	Dmac1 (MGP_PahariEiJ_G0028451)	Kdm4c (MGP_PahariEiJ_G0028450)	Frmd3 (MGP_PahariEiJ_G0028449)	2310002L09Rik (MGP_PahariEiJ_G0028448)	Rasef (MGP_PahariEiJ_G0028447)	Tle1 (MGP_PahariEiJ_G0028446)	MGP_PahariEiJ_G0028445	Megf9 (MGP_PahariEiJ_G0028444)	Cdk5rap2 (MGP_PahariEiJ_G0028443)
Rat	MODERN SPECIES	15	Haus6 (ENSRNOG00000046028)	Rraga (ENSRNOG00000007051) #8	Saxo1 (ENSRNOG00000048197) #9	Adamtsl1 (ENSRNOG00000006956) #11	Sh3gl2 (ENSRNOG00000006761) #13	Cntln (ENSRNOG00000043151) #14	Bnc2 (ENSRNOG00000006553) #15	LOC120102904 (ENSRNOG00000067108)	ENSRNOG00000064241	AABR07049060.1 (ENSRNOG00000033445) #16	Psip1 (ENSRNOG00000011498) #17	Snapc3 (ENSRNOG00000010825) #18	AABR07049043.1 (ENSRNOG00000047278)	Ttc39b (ENSRNOG00000042603) #20	Frem1 (ENSRNOG00000022309) #21	Cer1 (ENSRNOG00000010518) #22	Zdhhc21 (ENSRNOG00000010484) #23	Nfib (ENSRNOG00000009795) #24	Mpdz (ENSRNOG00000007894) #27	LOC120102902 (ENSRNOG00000065656)	RGD1565987 (ENSRNOG00000062659)	Lurap1l (ENSRNOG00000033740)	Tyrp1 (ENSRNOG00000029318)	ENSRNOG00000065765	RGD1563375 (ENSRNOG00000065031)	Snurf-ps2 (ENSRNOG00000022595)	Ptprd (ENSRNOG00000005711)	Dmac1 (ENSRNOG00000023946)	Kdm4c (ENSRNOG00000006644)	AABR07048770.1 (ENSRNOG00000031344)	Frmd3 (ENSRNOG00000006503)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1459														Ttc39b (ENSNGAG00000019817) #20	Frem1 (ENSNGAG00000018085) #21	Cer1 (ENSNGAG00000015175) #22	Zdhhc21 (ENSNGAG00000021676) #23	Nfib (ENSNGAG00000021838) #24	Mpdz (ENSNGAG00000022630) #27	Lurap1l (ENSNGAG00000018504)	Tyrp1 (ENSNGAG00000024330)	Ptprd (ENSNGAG00000011273)
Lesser Egyptian jerboa	MODERN SPECIES	66	ENSJJAG00000014571 #11	ENSJJAG00000010272	ENSJJAG00000024102	Sh3gl2 (ENSJJAG00000017618) #13	ENSJJAG00000011696	ENSJJAG00000008188 #14	ENSJJAG00000022818 #14	Bnc2 (ENSJJAG00000004324) #15	ENSJJAG00000019056	Ccdc171 (ENSJJAG00000020916) #16	ENSJJAG00000015360 #17	Snapc3 (ENSJJAG00000018408) #18	Ttc39b (ENSJJAG00000004238) #20	ENSJJAG00000010564	ENSJJAG00000015519 #21	Cer1 (ENSJJAG00000023511) #22	Zdhhc21 (ENSJJAG00000002851) #23	Nfib (ENSJJAG00000013052) #24	ENSJJAG00000010432	Mpdz (ENSJJAG00000012097) #27	Lurap1l (ENSJJAG00000014520)	Tyrp1 (ENSJJAG00000015009)	ENSJJAG00000010326	ENSJJAG00000023453
Kangaroo rat	MODERN SPECIES	372	Haus6 (ENSDORG00000026577)	Saxo1 (ENSDORG00000026559) #9	ENSDORG00000025399 #11	ENSDORG00000024977 #11	ENSDORG00000027313	Sh3gl2 (ENSDORG00000000622) #13	ENSDORG00000028767 #14	Bnc2 (ENSDORG00000008840) #15	Ccdc171 (ENSDORG00000005630) #16	Psip1 (ENSDORG00000004907) #17	ENSDORG00000004905 #18	ENSDORG00000024125	Ttc39b (ENSDORG00000014589) #20	Frem1 (ENSDORG00000014455) #21	ENSDORG00000023435	Cer1 (ENSDORG00000014454) #22	Zdhhc21 (ENSDORG00000026832) #23	Nfib (ENSDORG00000004277) #24	ENSDORG00000006362 #27