Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT01030000234519.e.a.a.a.a.b	ENSGT00940000153241.A	ENSGT00390000013287	ENSGT00940000162569.b
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT01030000234519.e.a.a.a.a.b	ENSGT00940000153241.A	ENSGT00390000013287
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Rat	MODERN SPECIES	15	Haus6 (ENSRNOG00000046028) #7	Rraga (ENSRNOG00000007051) #8	Saxo1 (ENSRNOG00000048197) #9	Adamtsl1 (ENSRNOG00000006956) #10	Sh3gl2 (ENSRNOG00000006761) #11	Cntln (ENSRNOG00000043151) #12	Bnc2 (ENSRNOG00000006553) #13	LOC120102904 (ENSRNOG00000067108) #14	ENSRNOG00000064241 #15	AABR07049060.1 (ENSRNOG00000033445) #16	Psip1 (ENSRNOG00000011498) #17	Snapc3 (ENSRNOG00000010825) #18	AABR07049043.1 (ENSRNOG00000047278) #19	Ttc39b (ENSRNOG00000042603) #20	Frem1 (ENSRNOG00000022309) #21	Cer1 (ENSRNOG00000010518) #22	Zdhhc21 (ENSRNOG00000010484) #23	Nfib (ENSRNOG00000009795) #24	Mpdz (ENSRNOG00000007894) #25	LOC120102902 (ENSRNOG00000065656) #26	RGD1565987 (ENSRNOG00000062659) #27	Lurap1l (ENSRNOG00000033740) #28	Tyrp1 (ENSRNOG00000029318) #29	ENSRNOG00000065765 #30	RGD1563375 (ENSRNOG00000065031) #31	Snurf-ps2 (ENSRNOG00000022595) #32	Ptprd (ENSRNOG00000005711) #33	Dmac1 (ENSRNOG00000023946) #34	Kdm4c (ENSRNOG00000006644) #35	AABR07048770.1 (ENSRNOG00000031344) #36	Frmd3 (ENSRNOG00000006503) #37
Mus	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577.e #37	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018.a.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706.u #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577.e #37	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018.a.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706.u #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577.e #37	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00740000117018.a.b	ENSGT00740000117018.b	ENSGT00940000161177
spretus	MODERN SPECIES	13	Rps6 (MGP_SPRETEiJ_G0027100)	Dennd4c (MGP_SPRETEiJ_G0027099)	Plin2 (MGP_SPRETEiJ_G0027098)	Haus6 (MGP_SPRETEiJ_G0027097) #7	Rraga (MGP_SPRETEiJ_G0027096) #8	Saxo1 (MGP_SPRETEiJ_G0027095) #9	Adamtsl1 (MGP_SPRETEiJ_G0027094) #10	MGP_SPRETEiJ_G0027093 #11	Cntln (MGP_SPRETEiJ_G0027092) #12	Bnc2 (MGP_SPRETEiJ_G0027091) #13	Ccdc171 (MGP_SPRETEiJ_G0027090) #16	Psip1 (MGP_SPRETEiJ_G0027089) #17	Snapc3 (MGP_SPRETEiJ_G0027088) #18	Ttc39b (MGP_SPRETEiJ_G0027087) #20	Frem1 (MGP_SPRETEiJ_G0027086) #21	Cer1 (MGP_SPRETEiJ_G0027085) #22	Zdhhc21 (MGP_SPRETEiJ_G0027084) #23	Nfib (MGP_SPRETEiJ_G0027083) #24	Mpdz (MGP_SPRETEiJ_G0027082) #25	Lurap1l (MGP_SPRETEiJ_G0027081) #28	Tyrp1 (MGP_SPRETEiJ_G0027080) #29	MGP_SPRETEiJ_G0027079	Dmac1 (MGP_SPRETEiJ_G0027078) #34	Kdm4c (MGP_SPRETEiJ_G0027077) #35	Frmd3 (MGP_SPRETEiJ_G0027076) #37	MGP_SPRETEiJ_G0027075	Tle1 (MGP_SPRETEiJ_G0027074)	MGP_SPRETEiJ_G0027073	Megf9 (MGP_SPRETEiJ_G0027072)	Cdk5rap2 (MGP_SPRETEiJ_G0027071)	Brinp1 (MGP_SPRETEiJ_G0027070)
Steppe mouse	MODERN SPECIES	3323				Haus6 (ENSMSIG00000021584) #7	Rraga (ENSMSIG00000021592) #8	Saxo1 (ENSMSIG00000021596) #9	Adamtsl1 (ENSMSIG00000021606) #10	ENSMSIG00000021744 #11	Cntln (ENSMSIG00000021797) #12	Bnc2 (ENSMSIG00000021983) #13	Ccdc171 (ENSMSIG00000022141) #16	Psip1 (ENSMSIG00000022367) #17	Snapc3 (ENSMSIG00000022439) #18	Ttc39b (ENSMSIG00000022488) #20	Frem1 (ENSMSIG00000022742) #21	Cer1 (ENSMSIG00000022937) #22	Zdhhc21 (ENSMSIG00000022950) #23	Nfib (ENSMSIG00000023003) #24
Mouse	MODERN SPECIES	13	Rps6 (ENSMUSG00000028495)	Dennd4c (ENSMUSG00000038024)	Plin2 (ENSMUSG00000028494)	Haus6 (ENSMUSG00000038047) #7	Rraga (ENSMUSG00000070934) #8	Saxo1 (ENSMUSG00000028492) #9	Adamtsl1 (ENSMUSG00000066113) #10	Sh3gl2 (ENSMUSG00000028488) #11	Cntln (ENSMUSG00000038070) #12	Bnc2 (ENSMUSG00000028487) #13	Ccdc171 (ENSMUSG00000052407) #16	Psip1 (ENSMUSG00000028484) #17	Snapc3 (ENSMUSG00000028483) #18	Ttc39b (ENSMUSG00000038172) #20	Frem1 (ENSMUSG00000059049) #21	Cer1 (ENSMUSG00000038192) #22	Zdhhc21 (ENSMUSG00000028403) #23	Nfib (ENSMUSG00000008575) #24	Mpdz (ENSMUSG00000028402) #25	Lurap1l (ENSMUSG00000048706) #28	Tyrp1 (ENSMUSG00000005994) #29	Ptprd (ENSMUSG00000028399) #33	Dmac1 (ENSMUSG00000028398) #34	Kdm4c (ENSMUSG00000028397) #35	Frmd3 (ENSMUSG00000049122) #37	2310002L09Rik (ENSMUSG00000028396)	Gm11756 (ENSMUSG00000093962)	Gm13871 (ENSMUSG00000096333)	Gm11757 (ENSMUSG00000096750)	Gm11758 (ENSMUSG00000096530)	Rasef (ENSMUSG00000043003)
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026135	Dennd4c (MGP_CAROLIEiJ_G0026134)	Plin2 (MGP_CAROLIEiJ_G0026133)	MGP_CAROLIEiJ_G0026132	Rraga (MGP_CAROLIEiJ_G0026131) #8	Saxo1 (MGP_CAROLIEiJ_G0026130) #9	Adamtsl1 (MGP_CAROLIEiJ_G0026129) #10	Sh3gl2 (MGP_CAROLIEiJ_G0026128) #11	Cntln (MGP_CAROLIEiJ_G0026127) #12	Bnc2 (MGP_CAROLIEiJ_G0026126) #13	Ccdc171 (MGP_CAROLIEiJ_G0026125) #16	Psip1 (MGP_CAROLIEiJ_G0026124) #17	Snapc3 (MGP_CAROLIEiJ_G0026123) #18	Ttc39b (MGP_CAROLIEiJ_G0026122) #20	Frem1 (MGP_CAROLIEiJ_G0026121) #21	Cer1 (MGP_CAROLIEiJ_G0026120) #22	Zdhhc21 (MGP_CAROLIEiJ_G0026119) #23	Nfib (MGP_CAROLIEiJ_G0026118) #24	Mpdz (MGP_CAROLIEiJ_G0026117) #25	Lurap1l (MGP_CAROLIEiJ_G0026116) #28	Tyrp1 (MGP_CAROLIEiJ_G0026115) #29	Ptprd (MGP_CAROLIEiJ_G0026114) #33	Dmac1 (MGP_CAROLIEiJ_G0026113) #34	Kdm4c (MGP_CAROLIEiJ_G0026112) #35	Frmd3 (MGP_CAROLIEiJ_G0026111) #37	2310002L09Rik (MGP_CAROLIEiJ_G0026110)	MGP_CAROLIEiJ_G0026109	Tle1 (MGP_CAROLIEiJ_G0026108)	Gm11232 (MGP_CAROLIEiJ_G0026107)	Megf9 (MGP_CAROLIEiJ_G0026106)	Cdk5rap2 (MGP_CAROLIEiJ_G0026105)
Shrew mouse	MODERN SPECIES	19	MGP_PahariEiJ_G0028473	Dennd4c (MGP_PahariEiJ_G0028472)	Plin2 (MGP_PahariEiJ_G0028471)	Haus6 (MGP_PahariEiJ_G0028470) #7	Rraga (MGP_PahariEiJ_G0028469) #8	Saxo1 (MGP_PahariEiJ_G0028468) #9	Adamtsl1 (MGP_PahariEiJ_G0028467) #10	MGP_PahariEiJ_G0028466 #11	Cntln (MGP_PahariEiJ_G0028465) #12	Bnc2 (MGP_PahariEiJ_G0028464) #13	Ccdc171 (MGP_PahariEiJ_G0028463) #16	Psip1 (MGP_PahariEiJ_G0028462) #17	Snapc3 (MGP_PahariEiJ_G0028461) #18	Ttc39b (MGP_PahariEiJ_G0028460) #20	Frem1 (MGP_PahariEiJ_G0028459) #21	Cer1 (MGP_PahariEiJ_G0028458) #22	Zdhhc21 (MGP_PahariEiJ_G0028457) #23	Nfib (MGP_PahariEiJ_G0028456) #24	MGP_PahariEiJ_G0028455 #25	Lurap1l (MGP_PahariEiJ_G0028454) #28	Tyrp1 (MGP_PahariEiJ_G0028453) #29	Ptprd (MGP_PahariEiJ_G0028452) #33	Dmac1 (MGP_PahariEiJ_G0028451) #34	Kdm4c (MGP_PahariEiJ_G0028450) #35	Frmd3 (MGP_PahariEiJ_G0028449) #37	2310002L09Rik (MGP_PahariEiJ_G0028448)	Rasef (MGP_PahariEiJ_G0028447)	Tle1 (MGP_PahariEiJ_G0028446)	MGP_PahariEiJ_G0028445	Megf9 (MGP_PahariEiJ_G0028444)	Cdk5rap2 (MGP_PahariEiJ_G0028443)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000169234	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001022609	Dennd4c (ENSCGRG00001004609)	Plin2 (ENSCGRG00001016267)	Saxo1 (ENSCGRG00001017278) #9	Adamtsl1 (ENSCGRG00001004761) #10	Sh3gl2 (ENSCGRG00001022450) #11	Cntln (ENSCGRG00001005303) #12	ENSCGRG00001006130	Bnc2 (ENSCGRG00001021192) #13	Ccdc171 (ENSCGRG00001012100) #16	Psip1 (ENSCGRG00001018077) #17	Snapc3 (ENSCGRG00001021052) #18	Ttc39b (ENSCGRG00001023116) #20	ENSCGRG00001006351	Frem1 (ENSCGRG00001012504) #21	Cer1 (ENSCGRG00001014082) #22	Zdhhc21 (ENSCGRG00001015866) #23	Nfib (ENSCGRG00001018402) #24	Mpdz (ENSCGRG00001023758) #25	ENSCGRG00001017051	Lurap1l (ENSCGRG00001018238) #28	Tyrp1 (ENSCGRG00001020616) #29	Ptprd (ENSCGRG00001001921) #33	Dmac1 (ENSCGRG00001012676) #34	ENSCGRG00001003314	Kdm4c (ENSCGRG00001014973) #35	Frmd3 (ENSCGRG00001020520) #37	ENSCGRG00001022505	2310002L09Rik (ENSCGRG00001024634)	Rasef (ENSCGRG00001001324)	ENSCGRG00001001298
Golden Hamster	MODERN SPECIES	740							Cntln (ENSMAUG00000016827) #12	Bnc2 (ENSMAUG00000017038) #13	Ccdc171 (ENSMAUG00000013269) #16	Psip1 (ENSMAUG00000014312) #17	ENSMAUG00000008531 #18	ENSMAUG00000002025	Ttc39b (ENSMAUG00000008949) #20	ENSMAUG00000011212	Frem1 (ENSMAUG00000014922) #21	Cer1 (ENSMAUG00000013311) #22	Zdhhc21 (ENSMAUG00000000495) #23	Nfib (ENSMAUG00000007632) #24	ENSMAUG00000003146 #25	ENSMAUG00000005222 #25	Lurap1l (ENSMAUG00000014887) #28	Tyrp1 (ENSMAUG00000017874) #29	ENSMAUG00000006579
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00940000158577 #37	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Northern American deer mouse	MODERN SPECIES	11	Haus6 (ENSPEMG00000028376) #7	Rraga (ENSPEMG00000012776) #8	Saxo1 (ENSPEMG00000000040) #9	Adamtsl1 (ENSPEMG00000005320) #10	Sh3gl2 (ENSPEMG00000010691) #11	ENSPEMG00000012875	Cntln (ENSPEMG00000013809) #12	Bnc2 (ENSPEMG00000006553) #13	ENSPEMG00000026637	Ccdc171 (ENSPEMG00000009589) #16	Psip1 (ENSPEMG00000015309) #17	Snapc3 (ENSPEMG00000015671) #18	Ttc39b (ENSPEMG00000017249) #20	ENSPEMG00000028674 #36	Frem1 (ENSPEMG00000007771) #21	Cer1 (ENSPEMG00000013498) #22	Zdhhc21 (ENSPEMG00000011202) #23	Nfib (ENSPEMG00000015036) #24	Mpdz (ENSPEMG00000002221) #25	Lurap1l (ENSPEMG00000028913) #28	ENSPEMG00000026523	Tyrp1 (ENSPEMG00000020081) #29	Ptprd (ENSPEMG00000017837) #33	Dmac1 (ENSPEMG00000004174) #34	ENSPEMG00000014283	Kdm4c (ENSPEMG00000009673) #35	Frmd3 (ENSPEMG00000018030) #37	2310002L09Rik (ENSPEMG00000011897)	Rasef (ENSPEMG00000002797)	ENSPEMG00000026811	Tle1 (ENSPEMG00000009903)
Prairie vole	MODERN SPECIES	1	Rps6 (ENSMOCG00000004590)	Dennd4c (ENSMOCG00000001944)	ENSMOCG00000014772	ENSMOCG00000023023	Saxo1 (ENSMOCG00000016102) #9	Adamtsl1 (ENSMOCG00000000817) #10	Sh3gl2 (ENSMOCG00000022289) #11	Cntln (ENSMOCG00000019830) #12	ENSMOCG00000008451	Bnc2 (ENSMOCG00000015132) #13	Ccdc171 (ENSMOCG00000016262) #16	Psip1 (ENSMOCG00000003043) #17	ENSMOCG00000014331 #18	Ttc39b (ENSMOCG00000005864) #20	Frem1 (ENSMOCG00000018942) #21	Cer1 (ENSMOCG00000022515) #22	Zdhhc21 (ENSMOCG00000015320) #23	Nfib (ENSMOCG00000021986) #24	ENSMOCG00000020921 #25	ENSMOCG00000018271 #25	Lurap1l (ENSMOCG00000015966) #28	Tyrp1 (ENSMOCG00000015263) #29	ENSMOCG00000004135	Ptprd (ENSMOCG00000001990) #33	ENSMOCG00000015211 #34	ENSMOCG00000012575	ENSMOCG00000013894 #35	Frmd3 (ENSMOCG00000008934) #37	2310002L09Rik (ENSMOCG00000022037)	Rasef (ENSMOCG00000000943)	Tle1 (ENSMOCG00000017405)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1459														Ttc39b (ENSNGAG00000019817) #20	Frem1 (ENSNGAG00000018085) #21	Cer1 (ENSNGAG00000015175) #22	Zdhhc21 (ENSNGAG00000021676) #23	Nfib (ENSNGAG00000021838) #24	Mpdz (ENSNGAG00000022630) #25	Lurap1l (ENSNGAG00000018504) #28	Tyrp1 (ENSNGAG00000024330) #29	Ptprd (ENSNGAG00000011273) #33
Lesser Egyptian jerboa	MODERN SPECIES	66	ENSJJAG00000014571 #10	ENSJJAG00000010272	ENSJJAG00000024102	Sh3gl2 (ENSJJAG00000017618) #11	ENSJJAG00000011696	ENSJJAG00000008188 #12	ENSJJAG00000022818 #12	Bnc2 (ENSJJAG00000004324) #13	ENSJJAG00000019056	Ccdc171 (ENSJJAG00000020916) #16	ENSJJAG00000015360 #17	Snapc3 (ENSJJAG00000018408) #18	Ttc39b (ENSJJAG00000004238) #20	ENSJJAG00000010564	ENSJJAG00000015519 #21	Cer1 (ENSJJAG00000023511) #22	Zdhhc21 (ENSJJAG00000002851) #23	Nfib (ENSJJAG00000013052) #24	ENSJJAG00000010432	Mpdz (ENSJJAG00000012097) #25	Lurap1l (ENSJJAG00000014520) #28	Tyrp1 (ENSJJAG00000015009) #29	ENSJJAG00000010326	ENSJJAG00000023453
Kangaroo rat	MODERN SPECIES	372	Haus6 (ENSDORG00000026577) #7	Saxo1 (ENSDORG00000026559) #9	ENSDORG00000025399 #10	ENSDORG00000024977 #10	ENSDORG00000027313	Sh3gl2 (ENSDORG00000000622) #11	ENSDORG00000028767 #12	Bnc2 (ENSDORG00000008840) #13	Ccdc171 (ENSDORG00000005630) #16	Psip1 (ENSDORG00000004907) #17	ENSDORG00000004905 #18	ENSDORG00000024125	Ttc39b (ENSDORG00000014589) #20	Frem1 (ENSDORG00000014455) #21	ENSDORG00000023435	Cer1 (ENSDORG00000014454) #22	Zdhhc21 (ENSDORG00000026832) #23	Nfib (ENSDORG00000004277) #24	ENSDORG00000006362 #25
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243.jb #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243.jb #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243.jb #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Long-tailed chinchilla	MODERN SPECIES	141	ENSCLAG00000009131	DENND4C (ENSCLAG00000007655)	PLIN2 (ENSCLAG00000006627)	HAUS6 (ENSCLAG00000015951) #7	RRAGA (ENSCLAG00000017884) #8	SAXO1 (ENSCLAG00000015777) #9	ADAMTSL1 (ENSCLAG00000016263) #10	SH3GL2 (ENSCLAG00000012375) #11	ENSCLAG00000010823 #12	BNC2 (ENSCLAG00000009846) #13	CCDC171 (ENSCLAG00000012226) #16	PSIP1 (ENSCLAG00000013790) #17	ENSCLAG00000010768 #18	TTC39B (ENSCLAG00000010926) #20	FREM1 (ENSCLAG00000006808) #21	CER1 (ENSCLAG00000010883) #22	ZDHHC21 (ENSCLAG00000009678) #23	NFIB (ENSCLAG00000012227) #24	MPDZ (ENSCLAG00000007286) #25	ENSCLAG00000014441	LURAP1L (ENSCLAG00000013531) #28	TYRP1 (ENSCLAG00000007960) #29	PTPRD (ENSCLAG00000005730) #33	DMAC1 (ENSCLAG00000007861) #34	KDM4C (ENSCLAG00000006468) #35	GLDC (ENSCLAG00000005815)	UHRF2 (ENSCLAG00000004646)	IL33 (ENSCLAG00000008507)	RANBP6 (ENSCLAG00000017716)	KIAA2026 (ENSCLAG00000010624)	MLANA (ENSCLAG00000005918)
Guinea pig	MODERN SPECIES	21	ENSCPOG00000011958	ENSCPOG00000025832	HAUS6 (ENSCPOG00000008053) #7	RRAGA (ENSCPOG00000008047) #8	ENSCPOG00000031962	ADAMTSL1 (ENSCPOG00000003783) #10	SH3GL2 (ENSCPOG00000015380) #11	ENSCPOG00000032617 #12	BNC2 (ENSCPOG00000006163) #13	CCDC171 (ENSCPOG00000012939) #16	ENSCPOG00000032438	PSIP1 (ENSCPOG00000005095) #17	SNAPC3 (ENSCPOG00000005081) #18	TTC39B (ENSCPOG00000004887) #20	FREM1 (ENSCPOG00000011267) #21	CER1 (ENSCPOG00000011943) #22	ZDHHC21 (ENSCPOG00000032754) #23	NFIB (ENSCPOG00000003925) #24	MPDZ (ENSCPOG00000008962) #25	LURAP1L (ENSCPOG00000037440) #28	TYRP1 (ENSCPOG00000014078) #29	PTPRD (ENSCPOG00000003625) #33	DMAC1 (ENSCPOG00000033539) #34	KDM4C (ENSCPOG00000004700) #35	GLDC (ENSCPOG00000004844)	UHRF2 (ENSCPOG00000004838)	IL33 (ENSCPOG00000030316)	RANBP6 (ENSCPOG00000005398)	KIAA2026 (ENSCPOG00000013437)	ENSCPOG00000039570	MLANA (ENSCPOG00000013436)
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000013333 #10	SH3GL2 (ENSHGLG00000012899) #11	CNTLN (ENSHGLG00000017883) #12	BNC2 (ENSHGLG00000009182) #13	ENSHGLG00000048786	CCDC171 (ENSHGLG00000005804) #16	ENSHGLG00000037696	ENSHGLG00000009693	PSIP1 (ENSHGLG00000010046) #17	ENSHGLG00000033501 #18	ENSHGLG00000018545 #20	ENSHGLG00000034380	ENSHGLG00000017979	ENSHGLG00000017971 #21	ENSHGLG00000039407	CER1 (ENSHGLG00000017945) #22	ENSHGLG00000050241 #23	NFIB (ENSHGLG00000010895) #24	ENSHGLG00000005821	MPDZ (ENSHGLG00000016510) #25	ENSHGLG00000031927	ENSHGLG00000016836	LURAP1L (ENSHGLG00000046955) #28	ENSHGLG00000015404 #29	ENSHGLG00000008769	ENSHGLG00000012054	ENSHGLG00000021417	PTPRD (ENSHGLG00000011342) #33	ENSHGLG00000033356	ENSHGLG00000044985	ENSHGLG00000036074 #34
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Marmotini	ANCESTRAL SPECIES	1	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Marmotini_b	ANCESTRAL SPECIES	118	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250 #7	ENSGT00950000183031.B.e.b #8	ENSGT00390000007252.c #9	ENSGT00940000156243 #10	ENSGT00940000160529 #11	ENSGT00440000034932 #12	ENSGT00390000005844.a.b #13	ENSGT00390000007924 #16	ENSGT00940000154706 #17	ENSGT00390000005708 #18	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #28	ENSGT00940000155804 #29	ENSGT00940000153617.D #33	ENSGT00390000003343 #34	ENSGT00940000154930 #35	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Arctic ground squirrel	MODERN SPECIES	200										BNC2 (ENSUPAG00010019192) #13	CCDC171 (ENSUPAG00010019240) #16	PSIP1 (ENSUPAG00010019272) #17	SNAPC3 (ENSUPAG00010019316) #18	TTC39B (ENSUPAG00010019335) #20	FREM1 (ENSUPAG00010019362) #21	CER1 (ENSUPAG00010019407) #22	ZDHHC21 (ENSUPAG00010019414) #23	NFIB (ENSUPAG00010019428) #24	MPDZ (ENSUPAG00010019555) #25
Alpin marmot	MODERN SPECIES	83	ENSMMMG00000006686	RRAGA (ENSMMMG00000006689) #8	SAXO1 (ENSMMMG00000006694) #9	ENSMMMG00000006707	ADAMTSL1 (ENSMMMG00000006719) #10	ENSMMMG00000006805	SH3GL2 (ENSMMMG00000006807) #11	CNTLN (ENSMMMG00000006867) #12	BNC2 (ENSMMMG00000006931) #13	CCDC171 (ENSMMMG00000007048) #16	PSIP1 (ENSMMMG00000007110) #17	SNAPC3 (ENSMMMG00000007194) #18	ENSMMMG00000007221	TTC39B (ENSMMMG00000007232) #20	FREM1 (ENSMMMG00000007262) #21	CER1 (ENSMMMG00000007339) #22	ZDHHC21 (ENSMMMG00000007346) #23	NFIB (ENSMMMG00000007378) #24	ENSMMMG00000007584	ENSMMMG00000007595	MPDZ (ENSMMMG00000007606) #25
Eurasian red squirrel	MODERN SPECIES	6	RRAGA (ENSSVLG00005022081) #8	SAXO1 (ENSSVLG00005021951) #9	ADAMTSL1 (ENSSVLG00005021790) #10	ENSSVLG00005021741	SH3GL2 (ENSSVLG00005021671) #11	CNTLN (ENSSVLG00005021621) #12	ENSSVLG00005021593	BNC2 (ENSSVLG00005021503) #13	CCDC171 (ENSSVLG00005021247) #16	PSIP1 (ENSSVLG00005021148) #17	SNAPC3 (ENSSVLG00005021073) #18	ENSSVLG00005021059	TTC39B (ENSSVLG00005020698) #20	ENSSVLG00005020502 #21	ENSSVLG00005020385 #21	CER1 (ENSSVLG00005020347) #22	ZDHHC21 (ENSSVLG00005020275) #23	NFIB (ENSSVLG00005019808) #24	ENSSVLG00005019293	MPDZ (ENSSVLG00005019125) #25	LURAP1L (ENSSVLG00005019004) #28	TYRP1 (ENSSVLG00005018842) #29	ENSSVLG00005018805	ENSSVLG00005018792	PTPRD (ENSSVLG00005016434) #33	ENSSVLG00005016242	DMAC1 (ENSSVLG00005016213) #34	ENSSVLG00005025401	KDM4C (ENSSVLG00005025382) #35	ENSSVLG00005025367	ENSSVLG00005025356