Murinae	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a #7	ENSGT00940000158215 #8	ENSGT00950000182920.b.a.b.a.b #9	ENSGT00390000008250 #10	ENSGT00950000183031.B.e.b #11	ENSGT00390000007252.c.c #12	ENSGT00940000156243 #13	ENSGT00940000160529 #14	ENSGT00440000034932 #15	ENSGT00390000005844.a.b #16	ENSGT00390000007924 #17	ENSGT00940000154706 #18	ENSGT00390000005708 #19	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #26	ENSGT00940000155804 #27	ENSGT00940000153617.D	ENSGT00390000003343 #29	ENSGT00940000154930 #30	ENSGT00940000158577 #31	ENSGT00520000057958	ENSGT00940000159488 #32	ENSGT01030000234519.e.a.a.a.a.a #33	ENSGT00740000117018 #34	ENSGT00940000161177 #35	ENSGT00950000183190.a.b.a.a #36
Mus	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a #7	ENSGT00940000158215 #8	ENSGT00950000182920.b.a.b.a.b #9	ENSGT00390000008250 #10	ENSGT00950000183031.B.e.b #11	ENSGT00390000007252.c.c #12	ENSGT00940000156243 #13	ENSGT00940000160529 #14	ENSGT00440000034932 #15	ENSGT00390000005844.a.b #16	ENSGT00390000007924 #17	ENSGT00940000154706 #18	ENSGT00390000005708 #19	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #26	ENSGT00940000155804 #27	ENSGT00940000153617.D	ENSGT00390000003343 #29	ENSGT00940000154930 #30	ENSGT00940000158577 #31	ENSGT00520000057958	ENSGT00940000159488 #32	ENSGT01030000234519.e.a.a.a.a.a #33	ENSGT00740000117018 #34	ENSGT00940000161177 #35	ENSGT00950000183190.a.b.a.a #36
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a #7	ENSGT00940000158215 #8	ENSGT00950000182920.b.a.b.a.b #9	ENSGT00390000008250 #10	ENSGT00950000183031.B.e.b #11	ENSGT00390000007252.c.c #12	ENSGT00940000156243 #13	ENSGT00940000160529 #14	ENSGT00440000034932 #15	ENSGT00390000005844.a.b #16	ENSGT00390000007924 #17	ENSGT00940000154706 #18	ENSGT00390000005708 #19	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #26	ENSGT00940000155804 #27	ENSGT00940000153617.D	ENSGT00390000003343 #29	ENSGT00940000154930 #30	ENSGT00940000158577.e #31	ENSGT00520000057958.a	ENSGT00940000159488 #32	ENSGT01030000234519.e.a.a.a.a.a #33	ENSGT00740000117018.a.b ##34	ENSGT00940000161177 #35	ENSGT00950000183190.a.b.a.a #36
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000009819.a.b.a.a.b.a #7	ENSGT00940000158215 #8	ENSGT00950000182920.b.a.b.a.b #9	ENSGT00390000008250 #10	ENSGT00950000183031.B.e.b #11	ENSGT00390000007252.c.c #12	ENSGT00940000156243 #13	ENSGT00940000160529 #14	ENSGT00440000034932 #15	ENSGT00390000005844.a.b #16	ENSGT00390000007924 #17	ENSGT00940000154706.u #18	ENSGT00390000005708 #19	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #26	ENSGT00940000155804 #27	ENSGT00940000153617.D	ENSGT00390000003343 #29	ENSGT00940000154930 #30	ENSGT00940000158577.e #31	ENSGT00520000057958.a	ENSGT00940000159488 #32	ENSGT01030000234519.e.a.a.a.a.a #33	ENSGT00740000117018.a.b ##34	ENSGT00940000161177 #35	ENSGT00950000183190.a.b.a.a #36
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.b.a.a.b.a #7	ENSGT00940000158215 #8	ENSGT00950000182920.b.a.b.a.b #9	ENSGT00390000008250 #10	ENSGT00950000183031.B.e.b #11	ENSGT00390000007252.c.c #12	ENSGT00940000156243 #13	ENSGT00940000160529 #14	ENSGT00440000034932 #15	ENSGT00390000005844.a.b #16	ENSGT00390000007924 #17	ENSGT00940000154706.u #18	ENSGT00390000005708 #19	ENSGT00950000182917.a.a.b.a #20	ENSGT00940000156990 #21	ENSGT00530000063926.a #22	ENSGT00940000158006 #23	ENSGT00950000182916.a.b.a.b #24	ENSGT00940000155586.B #25	ENSGT00530000063790.b #26	ENSGT00940000155804 #27	ENSGT00940000153617.D	ENSGT00390000003343 #29	ENSGT00940000154930 #30	ENSGT00940000158577.e #31	ENSGT00520000057958.a	ENSGT00940000159488 #32	ENSGT01030000234519.e.a.a.a.a.a #33	ENSGT00740000117018.a.b ##34	ENSGT00740000117018.b #34	ENSGT00940000161177 #35
spretus	MODERN SPECIES	13	Rps6 (MGP_SPRETEiJ_G0027100) #7	Dennd4c (MGP_SPRETEiJ_G0027099) #8	Plin2 (MGP_SPRETEiJ_G0027098) #9	Haus6 (MGP_SPRETEiJ_G0027097) #10	Rraga (MGP_SPRETEiJ_G0027096) #11	Saxo1 (MGP_SPRETEiJ_G0027095) #12	Adamtsl1 (MGP_SPRETEiJ_G0027094) #13	MGP_SPRETEiJ_G0027093 #14	Cntln (MGP_SPRETEiJ_G0027092) #15	Bnc2 (MGP_SPRETEiJ_G0027091) #16	Ccdc171 (MGP_SPRETEiJ_G0027090) #17	Psip1 (MGP_SPRETEiJ_G0027089) #18	Snapc3 (MGP_SPRETEiJ_G0027088) #19	Ttc39b (MGP_SPRETEiJ_G0027087) #20	Frem1 (MGP_SPRETEiJ_G0027086) #21	Cer1 (MGP_SPRETEiJ_G0027085) #22	Zdhhc21 (MGP_SPRETEiJ_G0027084) #23	Nfib (MGP_SPRETEiJ_G0027083) #24	Mpdz (MGP_SPRETEiJ_G0027082) #25	Lurap1l (MGP_SPRETEiJ_G0027081) #26	Tyrp1 (MGP_SPRETEiJ_G0027080) #27	MGP_SPRETEiJ_G0027079 #28	Dmac1 (MGP_SPRETEiJ_G0027078) #29	Kdm4c (MGP_SPRETEiJ_G0027077) #30	Frmd3 (MGP_SPRETEiJ_G0027076) #31	MGP_SPRETEiJ_G0027075 #32	Tle1 (MGP_SPRETEiJ_G0027074) #33	MGP_SPRETEiJ_G0027073 #34	Megf9 (MGP_SPRETEiJ_G0027072) #35	Cdk5rap2 (MGP_SPRETEiJ_G0027071) #36	Brinp1 (MGP_SPRETEiJ_G0027070) #37
Steppe mouse	MODERN SPECIES	3323				Haus6 (ENSMSIG00000021584) #10	Rraga (ENSMSIG00000021592) #11	Saxo1 (ENSMSIG00000021596) #12	Adamtsl1 (ENSMSIG00000021606) #13	ENSMSIG00000021744 #14	Cntln (ENSMSIG00000021797) #15	Bnc2 (ENSMSIG00000021983) #16	Ccdc171 (ENSMSIG00000022141) #17	Psip1 (ENSMSIG00000022367) #18	Snapc3 (ENSMSIG00000022439) #19	Ttc39b (ENSMSIG00000022488) #20	Frem1 (ENSMSIG00000022742) #21	Cer1 (ENSMSIG00000022937) #22	Zdhhc21 (ENSMSIG00000022950) #23	Nfib (ENSMSIG00000023003) #24
Mouse	MODERN SPECIES	13	Rps6 (ENSMUSG00000028495) #7	Dennd4c (ENSMUSG00000038024) #8	Plin2 (ENSMUSG00000028494) #9	Haus6 (ENSMUSG00000038047) #10	Rraga (ENSMUSG00000070934) #11	Saxo1 (ENSMUSG00000028492) #12	Adamtsl1 (ENSMUSG00000066113) #13	Sh3gl2 (ENSMUSG00000028488) #14	Cntln (ENSMUSG00000038070) #15	Bnc2 (ENSMUSG00000028487) #16	Ccdc171 (ENSMUSG00000052407) #17	Psip1 (ENSMUSG00000028484) #18	Snapc3 (ENSMUSG00000028483) #19	Ttc39b (ENSMUSG00000038172) #20	Frem1 (ENSMUSG00000059049) #21	Cer1 (ENSMUSG00000038192) #22	Zdhhc21 (ENSMUSG00000028403) #23	Nfib (ENSMUSG00000008575) #24	Mpdz (ENSMUSG00000028402) #25	Lurap1l (ENSMUSG00000048706) #26	Tyrp1 (ENSMUSG00000005994) #27	Ptprd (ENSMUSG00000028399)	Dmac1 (ENSMUSG00000028398) #29	Kdm4c (ENSMUSG00000028397) #30	Frmd3 (ENSMUSG00000049122) #31	2310002L09Rik (ENSMUSG00000028396)	Gm11756 (ENSMUSG00000093962)	Gm13871 (ENSMUSG00000096333)	Gm11757 (ENSMUSG00000096750)	Gm11758 (ENSMUSG00000096530)	Rasef (ENSMUSG00000043003) #32
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026135 ##7	Dennd4c (MGP_CAROLIEiJ_G0026134) #8	Plin2 (MGP_CAROLIEiJ_G0026133) #9	MGP_CAROLIEiJ_G0026132	Rraga (MGP_CAROLIEiJ_G0026131) #11	Saxo1 (MGP_CAROLIEiJ_G0026130) #12	Adamtsl1 (MGP_CAROLIEiJ_G0026129) #13	Sh3gl2 (MGP_CAROLIEiJ_G0026128) #14	Cntln (MGP_CAROLIEiJ_G0026127) #15	Bnc2 (MGP_CAROLIEiJ_G0026126) #16	Ccdc171 (MGP_CAROLIEiJ_G0026125) #17	Psip1 (MGP_CAROLIEiJ_G0026124) #18	Snapc3 (MGP_CAROLIEiJ_G0026123) #19	Ttc39b (MGP_CAROLIEiJ_G0026122) #20	Frem1 (MGP_CAROLIEiJ_G0026121) #21	Cer1 (MGP_CAROLIEiJ_G0026120) #22	Zdhhc21 (MGP_CAROLIEiJ_G0026119) #23	Nfib (MGP_CAROLIEiJ_G0026118) #24	Mpdz (MGP_CAROLIEiJ_G0026117) #25	Lurap1l (MGP_CAROLIEiJ_G0026116) #26	Tyrp1 (MGP_CAROLIEiJ_G0026115) #27	Ptprd (MGP_CAROLIEiJ_G0026114)	Dmac1 (MGP_CAROLIEiJ_G0026113) #29	Kdm4c (MGP_CAROLIEiJ_G0026112) #30	Frmd3 (MGP_CAROLIEiJ_G0026111) #31	2310002L09Rik (MGP_CAROLIEiJ_G0026110)	MGP_CAROLIEiJ_G0026109 #32	Tle1 (MGP_CAROLIEiJ_G0026108) #33	Gm11232 (MGP_CAROLIEiJ_G0026107) ##34	Megf9 (MGP_CAROLIEiJ_G0026106) #35	Cdk5rap2 (MGP_CAROLIEiJ_G0026105) #36
Shrew mouse	MODERN SPECIES	19	MGP_PahariEiJ_G0028473 ##7	Dennd4c (MGP_PahariEiJ_G0028472) #8	Plin2 (MGP_PahariEiJ_G0028471) #9	Haus6 (MGP_PahariEiJ_G0028470) #10	Rraga (MGP_PahariEiJ_G0028469) #11	Saxo1 (MGP_PahariEiJ_G0028468) #12	Adamtsl1 (MGP_PahariEiJ_G0028467) #13	MGP_PahariEiJ_G0028466 #14	Cntln (MGP_PahariEiJ_G0028465) #15	Bnc2 (MGP_PahariEiJ_G0028464) #16	Ccdc171 (MGP_PahariEiJ_G0028463) #17	Psip1 (MGP_PahariEiJ_G0028462) #18	Snapc3 (MGP_PahariEiJ_G0028461) #19	Ttc39b (MGP_PahariEiJ_G0028460) #20	Frem1 (MGP_PahariEiJ_G0028459) #21	Cer1 (MGP_PahariEiJ_G0028458) #22	Zdhhc21 (MGP_PahariEiJ_G0028457) #23	Nfib (MGP_PahariEiJ_G0028456) #24	MGP_PahariEiJ_G0028455 #25	Lurap1l (MGP_PahariEiJ_G0028454) #26	Tyrp1 (MGP_PahariEiJ_G0028453) #27	Ptprd (MGP_PahariEiJ_G0028452)	Dmac1 (MGP_PahariEiJ_G0028451) #29	Kdm4c (MGP_PahariEiJ_G0028450) #30	Frmd3 (MGP_PahariEiJ_G0028449) #31	2310002L09Rik (MGP_PahariEiJ_G0028448)	Rasef (MGP_PahariEiJ_G0028447) #32	Tle1 (MGP_PahariEiJ_G0028446) #33	MGP_PahariEiJ_G0028445 #34	Megf9 (MGP_PahariEiJ_G0028444) #35	Cdk5rap2 (MGP_PahariEiJ_G0028443) #36
Rat	MODERN SPECIES	15	Haus6 (ENSRNOG00000046028) #10	Rraga (ENSRNOG00000007051) #11	Saxo1 (ENSRNOG00000048197) #12	Adamtsl1 (ENSRNOG00000006956) #13	Sh3gl2 (ENSRNOG00000006761) #14	Cntln (ENSRNOG00000043151) #15	Bnc2 (ENSRNOG00000006553) #16	LOC120102904 (ENSRNOG00000067108)	ENSRNOG00000064241	AABR07049060.1 (ENSRNOG00000033445) #17	Psip1 (ENSRNOG00000011498) #18	Snapc3 (ENSRNOG00000010825) #19	AABR07049043.1 (ENSRNOG00000047278)	Ttc39b (ENSRNOG00000042603) #20	Frem1 (ENSRNOG00000022309) #21	Cer1 (ENSRNOG00000010518) #22	Zdhhc21 (ENSRNOG00000010484) #23	Nfib (ENSRNOG00000009795) #24	Mpdz (ENSRNOG00000007894) #25	LOC120102902 (ENSRNOG00000065656)	RGD1565987 (ENSRNOG00000062659)	Lurap1l (ENSRNOG00000033740) #26	Tyrp1 (ENSRNOG00000029318) #27	ENSRNOG00000065765	RGD1563375 (ENSRNOG00000065031)	Snurf-ps2 (ENSRNOG00000022595)	Ptprd (ENSRNOG00000005711)	Dmac1 (ENSRNOG00000023946) #29	Kdm4c (ENSRNOG00000006644) #30	AABR07048770.1 (ENSRNOG00000031344)	Frmd3 (ENSRNOG00000006503) #31