Glires	ANCESTRAL SPECIES	3	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00860000135966
Lesser Egyptian jerboa	MODERN SPECIES	56	Enpp7 (ENSJJAG00000015722) #7	Rbfox3 (ENSJJAG00000014167) #8	Engase (ENSJJAG00000017419) #9	C1qtnf1 (ENSJJAG00000015196) #10	Cant1 (ENSJJAG00000014187) #11	Lgals3bp (ENSJJAG00000013378) #12	Cep295nl (ENSJJAG00000014899) #13	Timp2 (ENSJJAG00000014042) #14	ENSJJAG00000015144 #15	Cyth1 (ENSJJAG00000023421) #16	Dnah17 (ENSJJAG00000022480) #17	Pgs1 (ENSJJAG00000014947) #18	Socs3 (ENSJJAG00000005819) #19	Tmem235 (ENSJJAG00000015038) #20	Afmid (ENSJJAG00000012806) #21	Tk1 (ENSJJAG00000014243) #22	Syngr2 (ENSJJAG00000015399) #23	6030468B19Rik (ENSJJAG00000013183) #24	Tmc8 (ENSJJAG00000014418) #25	Tmc6 (ENSJJAG00000013911) #26	Tnrc6c (ENSJJAG00000017055) #27	Septin9 (ENSJJAG00000015931) #28	Sec14l1 (ENSJJAG00000014775) #29	Mgat5b (ENSJJAG00000013209) #30	Mfsd11 (ENSJJAG00000013159) #31	Srsf2 (ENSJJAG00000013794) #32	Mettl23 (ENSJJAG00000012888) #33	Jmjd6 (ENSJJAG00000022867) #34	Mxra7 (ENSJJAG00000012046) #35	St6galnac1 (ENSJJAG00000014221) #36	St6galnac2 (ENSJJAG00000011713) #37
Muroidea	ANCESTRAL SPECIES		ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00860000135966
Upper Galilee mountains blind mole rat	MODERN SPECIES	1417																Tk1 (ENSNGAG00000012392) #22	Syngr2 (ENSNGAG00000012963) #23	6030468B19Rik (ENSNGAG00000014080) #24	Tmc8 (ENSNGAG00000018154) #25	Tmc6 (ENSNGAG00000021125) #26	Tnrc6c (ENSNGAG00000012203) #27
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00860000135966
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37	ENSGT00520000058096
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	15	Engase (ENSMOCG00000019185) #9	C1qtnf1 (ENSMOCG00000015186) #10	Cant1 (ENSMOCG00000021731) #11	Lgals3bp (ENSMOCG00000018929) #12	Cep295nl (ENSMOCG00000020591) #13	Timp2 (ENSMOCG00000018943) #14	Usp36 (ENSMOCG00000015065) #15	Cyth1 (ENSMOCG00000021929) #16	Dnah17 (ENSMOCG00000021106) #17	Pgs1 (ENSMOCG00000013984) #18	Socs3 (ENSMOCG00000021679) #19	Tha1 (ENSMOCG00000016182)	Tmem235 (ENSMOCG00000016117) #20	Birc5 (ENSMOCG00000016425)	Afmid (ENSMOCG00000015815) #21	ENSMOCG00000013626 #22	Syngr2 (ENSMOCG00000013728) #23	6030468B19Rik (ENSMOCG00000013691) #24	Tmc8 (ENSMOCG00000017792) #25	Tmc6 (ENSMOCG00000014633) #26	Tnrc6c (ENSMOCG00000015879) #27	ENSMOCG00000021875	Septin9 (ENSMOCG00000019545) #28	Sec14l1 (ENSMOCG00000017183) #29	Mgat5b (ENSMOCG00000014069) #30	Mfsd11 (ENSMOCG00000021977) #31	ENSMOCG00000013608	Mettl23 (ENSMOCG00000013930) #33	Jmjd6 (ENSMOCG00000015284) #34	Mxra7 (ENSMOCG00000013027) #35	St6galnac2 (ENSMOCG00000014576) #37
Prairie vole	MODERN SPECIES	87	Fezf1 (ENSMOCG00000004729)	Cadps2 (ENSMOCG00000022770)	Slc13a1 (ENSMOCG00000021479)	Iqub (ENSMOCG00000019365)	Ndufa5 (ENSMOCG00000007318)	Asb15 (ENSMOCG00000020491)	Lmod2 (ENSMOCG00000002701)	Wasl (ENSMOCG00000010725)	Hyal6 (ENSMOCG00000011551)	Hyal4 (ENSMOCG00000016868)	Spam1 (ENSMOCG00000019823)	Hyal5 (ENSMOCG00000005616)	Tmem229a (ENSMOCG00000005436)	ENSMOCG00000004830	ENSMOCG00000020573	ENSMOCG00000000208 #22	Gpr37 (ENSMOCG00000004144)	Pot1a (ENSMOCG00000013730)	ENSMOCG00000003837	ENSMOCG00000005667	Grm8 (ENSMOCG00000012255)	ENSMOCG00000014942	ENSMOCG00000004985	Gcc1 (ENSMOCG00000022632)	Arf5 (ENSMOCG00000022861)	Fscn3 (ENSMOCG00000005936)	Pax4 (ENSMOCG00000018632)	Snd1 (ENSMOCG00000005040)	Lrrc4 (ENSMOCG00000005637)	Lep (ENSMOCG00000015600)	Rbm28 (ENSMOCG00000014615)
Northern American deer mouse	MODERN SPECIES	21	Engase (ENSPEMG00000014032) #9	C1qtnf1 (ENSPEMG00000026107) #10	Cant1 (ENSPEMG00000018679) #11	Lgals3bp (ENSPEMG00000016195) #12	Timp2 (ENSPEMG00000026701) #14	Usp36 (ENSPEMG00000016433) #15	Cyth1 (ENSPEMG00000010161) #16	Dnah17 (ENSPEMG00000012181) #17	Pgs1 (ENSPEMG00000018438) #18	Socs3 (ENSPEMG00000031054) #19	ENSPEMG00000006732	Tha1 (ENSPEMG00000010615)	Tmem235 (ENSPEMG00000007972) #20	Birc5 (ENSPEMG00000007142)	Afmid (ENSPEMG00000013489) #21	Tk1 (ENSPEMG00000014295) #22	Syngr2 (ENSPEMG00000010557) #23	6030468B19Rik (ENSPEMG00000005757) #24	Tmc8 (ENSPEMG00000012329) #25	Tmc6 (ENSPEMG00000012089) #26	ENSPEMG00000027443	Tnrc6c (ENSPEMG00000009785) #27	Septin9 (ENSPEMG00000016176) #28	Sec14l1 (ENSPEMG00000011090) #29	Mgat5b (ENSPEMG00000005373) #30	Mfsd11 (ENSPEMG00000014004) #31	Mettl23 (ENSPEMG00000015725) #33	Jmjd6 (ENSPEMG00000001289) #34	Mxra7 (ENSPEMG00000015097) #35	St6galnac1 (ENSPEMG00000016199) #36	St6galnac2 (ENSPEMG00000016035) #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	722	Fbxl13 (ENSMAUG00000004286)	Lrrc17 (ENSMAUG00000004793)	Fam185a (ENSMAUG00000006573)	Ccdc146 (ENSMAUG00000008882)	Fgl2 (ENSMAUG00000017628)	Gsap (ENSMAUG00000001104)	Ptpn12 (ENSMAUG00000000239)	Rsbn1l (ENSMAUG00000016941)	Tmem60 (ENSMAUG00000000985)	Phtf2 (ENSMAUG00000014092)	Magi2 (ENSMAUG00000013050)	Gnai1 (ENSMAUG00000000903)	Gnat3 (ENSMAUG00000007965)	Cd36 (ENSMAUG00000000590)	Sema3c (ENSMAUG00000013450)	ENSMAUG00000003314 #22	Cdhr17 (ENSMAUG00000016818)	Hgf (ENSMAUG00000007722)	Cacna2d1 (ENSMAUG00000003964)	ENSMAUG00000011469
Golden Hamster	MODERN SPECIES	637	Engase (ENSMAUG00000015936) #9	C1qtnf1 (ENSMAUG00000012075) #10	Cant1 (ENSMAUG00000012573) #11	Lgals3bp (ENSMAUG00000014262) #12	Timp2 (ENSMAUG00000013106) #14	Cep295nl (ENSMAUG00000008712) #13	Usp36 (ENSMAUG00000021889) #15	Cyth1 (ENSMAUG00000021978) #16	Dnah17 (ENSMAUG00000004455) #17	Pgs1 (ENSMAUG00000009274) #18	Socs3 (ENSMAUG00000010984) #19	Tha1 (ENSMAUG00000017293)	Tmem235 (ENSMAUG00000018596) #20	Birc5 (ENSMAUG00000021983)	Afmid (ENSMAUG00000022239) #21	ENSMAUG00000020961 #22	Syngr2 (ENSMAUG00000020436) #23	6030468B19Rik (ENSMAUG00000021499) #24	Tmc8 (ENSMAUG00000022139) #25	Tmc6 (ENSMAUG00000022231) #26	Tnrc6c (ENSMAUG00000021618) #27	Septin9 (ENSMAUG00000021555) #28	ENSMAUG00000001914 #29	ENSMAUG00000018281	Mgat5b (ENSMAUG00000022211) #30	Mfsd11 (ENSMAUG00000002082) #31	Srsf2 (ENSMAUG00000022242) #32	Mettl23 (ENSMAUG00000001468) #33	Jmjd6 (ENSMAUG00000011301) #34	Mxra7 (ENSMAUG00000011987) #35	St6galnac1 (ENSMAUG00000007479) #36
Chinese hamster chok1gshd	MODERN SPECIES	33	C1qtnf1 (ENSCGRG00001013304) #10	Cant1 (ENSCGRG00001017568) #11	Lgals3bp (ENSCGRG00001017663) #12	Cep295nl (ENSCGRG00001014121) #13	Timp2 (ENSCGRG00001020133) #14	Usp36 (ENSCGRG00001022244) #15	Cyth1 (ENSCGRG00001012660) #16	ENSCGRG00001024575	Dnah17 (ENSCGRG00001007869) #17	PGS1 (ENSCGRG00001019173) #18	Socs3 (ENSCGRG00001002299) #19	Tha1 (ENSCGRG00001015743)	Tmem235 (ENSCGRG00001003448) #20	ENSCGRG00001024015	Afmid (ENSCGRG00001014003) #21	TK1 (ENSCGRG00001018904) #22	Syngr2 (ENSCGRG00001011646) #23	6030468B19Rik (ENSCGRG00001002193) #24	Tmc8 (ENSCGRG00001023341) #25	Tmc6 (ENSCGRG00001003665) #26	Tnrc6c (ENSCGRG00001022686) #27	Septin9 (ENSCGRG00001008836) #28	Sec14l1 (ENSCGRG00001017968) #29	Mgat5b (ENSCGRG00001004558) #30	Mfsd11 (ENSCGRG00001020193) #31	Srsf2 (ENSCGRG00001023483) #32	Mettl23 (ENSCGRG00001023289) #33	Jmjd6 (ENSCGRG00001018648) #34	Mxra7 (ENSCGRG00001017342) #35	St6galnac1 (ENSCGRG00001010902) #36	St6galnac2 (ENSCGRG00001014926) #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00860000135966
Mus	ANCESTRAL SPECIES	2	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00860000135587	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00940000170233	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT00860000135913	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00860000135587	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00940000170233	ENSGT00510000048008 #33	ENSGT00940000156867 #34
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT00860000135913	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00860000135587	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35
Mus_C	ANCESTRAL SPECIES	21	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT00860000135913	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00860000135587	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35
Steppe mouse	MODERN SPECIES	1422															ENSMSIG00000013290 #21	Tk1 (ENSMSIG00000013357) #22	Syngr2 (ENSMSIG00000013373) #23
spretus	MODERN SPECIES	2	Engase (MGP_SPRETEiJ_G0018330) #9	C1qtnf1 (MGP_SPRETEiJ_G0018329) #10	Cant1 (MGP_SPRETEiJ_G0018328) #11	Lgals3bp (MGP_SPRETEiJ_G0018327) #12	Cep295nl (MGP_SPRETEiJ_G0018326) #13	Timp2 (MGP_SPRETEiJ_G0018325) #14	Usp36 (MGP_SPRETEiJ_G0018324) #15	Cyth1 (MGP_SPRETEiJ_G0018323) #16	Dnah17 (MGP_SPRETEiJ_G0018322) #17	Pgs1 (MGP_SPRETEiJ_G0018321) #18	Socs3 (MGP_SPRETEiJ_G0018320) #19	Tha1 (MGP_SPRETEiJ_G0018319)	Tmem235 (MGP_SPRETEiJ_G0018318) #20	Birc5 (MGP_SPRETEiJ_G0018317)	Afmid (MGP_SPRETEiJ_G0018316) #21	Tk1 (MGP_SPRETEiJ_G0018315) #22	Syngr2 (MGP_SPRETEiJ_G0018314) #23	MGP_SPRETEiJ_G0018313	6030468B19Rik (MGP_SPRETEiJ_G0018312) #24	Tmc8 (MGP_SPRETEiJ_G0018311) #25	Tmc6 (MGP_SPRETEiJ_G0018310) #26	Tnrc6c (MGP_SPRETEiJ_G0018309) #27	MGP_SPRETEiJ_G0018308	Septin9 (MGP_SPRETEiJ_G0018307) #28	Sec14l1 (MGP_SPRETEiJ_G0018306) #29	Mgat5b (MGP_SPRETEiJ_G0018305) #30	Mfsd11 (MGP_SPRETEiJ_G0018304) #31	Srsf2 (MGP_SPRETEiJ_G0018303) #32	Mettl23 (MGP_SPRETEiJ_G0018302) #33	Jmjd6 (MGP_SPRETEiJ_G0018301) #34	Mxra7 (MGP_SPRETEiJ_G0018300) #35
Mouse	MODERN SPECIES	2	Engase (ENSMUSG00000033857) #9	C1qtnf1 (ENSMUSG00000017446) #10	Cant1 (ENSMUSG00000025575) #11	Lgals3bp (ENSMUSG00000033880) #12	Cep295nl (ENSMUSG00000076433) #13	Timp2 (ENSMUSG00000017466) #14	Usp36 (ENSMUSG00000033909) #15	Cyth1 (ENSMUSG00000017132) #16	Dnah17 (ENSMUSG00000033987) #17	Pgs1 (ENSMUSG00000017715) #18	Socs3 (ENSMUSG00000053113) #19	Tha1 (ENSMUSG00000017713)	Tmem235 (ENSMUSG00000070330) #20	Birc5 (ENSMUSG00000017716)	Afmid (ENSMUSG00000017718) #21	Tk1 (ENSMUSG00000025574) #22	Gm20708 (ENSMUSG00000093485)	Syngr2 (ENSMUSG00000048277) #23	6030468B19Rik (ENSMUSG00000025573) #24	Tmc8 (ENSMUSG00000050106) #25	Tmc6 (ENSMUSG00000025572) #26	Tnrc6c (ENSMUSG00000025571) #27	Septin9 (ENSMUSG00000059248) #28	Sec14l1 (ENSMUSG00000020823) #29	Mgat5b (ENSMUSG00000043857) #30	Mfsd11 (ENSMUSG00000020818) #31	Srsf2 (ENSMUSG00000034120) #32	Mettl23 (ENSMUSG00000090266) #33	Jmjd6 (ENSMUSG00000056962) #34	Mxra7 (ENSMUSG00000020814) #35	St6galnac1 (ENSMUSG00000009588) #36
Ryukyu mouse	MODERN SPECIES	2	Engase (MGP_CAROLIEiJ_G0017486) #9	C1qtnf1 (MGP_CAROLIEiJ_G0017485) #10	Cant1 (MGP_CAROLIEiJ_G0017484) #11	Lgals3bp (MGP_CAROLIEiJ_G0017483) #12	Cep295nl (MGP_CAROLIEiJ_G0017482) #13	Timp2 (MGP_CAROLIEiJ_G0017481) #14	Usp36 (MGP_CAROLIEiJ_G0017480) #15	Cyth1 (MGP_CAROLIEiJ_G0017479) #16	Dnah17 (MGP_CAROLIEiJ_G0017478) #17	Pgs1 (MGP_CAROLIEiJ_G0017477) #18	Socs3 (MGP_CAROLIEiJ_G0017476) #19	Tha1 (MGP_CAROLIEiJ_G0017475)	Tmem235 (MGP_CAROLIEiJ_G0017474) #20	Birc5 (MGP_CAROLIEiJ_G0017473)	Afmid (MGP_CAROLIEiJ_G0017472) #21	Tk1 (MGP_CAROLIEiJ_G0017471) #22	MGP_CAROLIEiJ_G0017470	Syngr2 (MGP_CAROLIEiJ_G0017469) #23	6030468B19Rik (MGP_CAROLIEiJ_G0017468) #24	Tmc8 (MGP_CAROLIEiJ_G0017467) #25	Tmc6 (MGP_CAROLIEiJ_G0017466) #26	Tnrc6c (MGP_CAROLIEiJ_G0017465) #27	MGP_CAROLIEiJ_G0017464	Septin9 (MGP_CAROLIEiJ_G0017463) #28	Sec14l1 (MGP_CAROLIEiJ_G0017462) #29	MGP_CAROLIEiJ_G0017461	MGP_CAROLIEiJ_G0017460	Mgat5b (MGP_CAROLIEiJ_G0017459) #30	Mfsd11 (MGP_CAROLIEiJ_G0017458) #31	Srsf2 (MGP_CAROLIEiJ_G0017457) #32	MGP_CAROLIEiJ_G0017456
Shrew mouse	MODERN SPECIES	5	Engase (MGP_PahariEiJ_G0018613) #9	C1qtnf1 (MGP_PahariEiJ_G0018612) #10	Cant1 (MGP_PahariEiJ_G0018611) #11	MGP_PahariEiJ_G0018610 #12	Cep295nl (MGP_PahariEiJ_G0018609) #13	Timp2 (MGP_PahariEiJ_G0018608) #14	Usp36 (MGP_PahariEiJ_G0018607) #15	Cyth1 (MGP_PahariEiJ_G0018606) #16	Dnah17 (MGP_PahariEiJ_G0018605) #17	Pgs1 (MGP_PahariEiJ_G0018604) #18	Socs3 (MGP_PahariEiJ_G0018603) #19	Tha1 (MGP_PahariEiJ_G0018602)	Tmem235 (MGP_PahariEiJ_G0018601) #20	Birc5 (MGP_PahariEiJ_G0018600)	MGP_PahariEiJ_G0018599 #21	Tk1 (MGP_PahariEiJ_G0018598) #22	Syngr2 (MGP_PahariEiJ_G0018597) #23	6030468B19Rik (MGP_PahariEiJ_G0018596) #24	Tmc8 (MGP_PahariEiJ_G0018595) #25	Tmc6 (MGP_PahariEiJ_G0018594) #26	Tnrc6c (MGP_PahariEiJ_G0018593) #27	MGP_PahariEiJ_G0018592	Septin9 (MGP_PahariEiJ_G0018591) #28	Sec14l1 (MGP_PahariEiJ_G0018590) #29	Mgat5b (MGP_PahariEiJ_G0018589) #30	Mfsd11 (MGP_PahariEiJ_G0018588) #31	Srsf2 (MGP_PahariEiJ_G0018587) #32	MGP_PahariEiJ_G0018586	Jmjd6 (MGP_PahariEiJ_G0018585) #34	Mxra7 (MGP_PahariEiJ_G0018584) #35	St6galnac1 (MGP_PahariEiJ_G0018583) #36
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES	1	Rbfox3 (ENSRNOG00000003386) #8	Engase (ENSRNOG00000027498) #9	C1qtnf1 (ENSRNOG00000003259) #10	Lgals3bp (ENSRNOG00000003217) #12	Timp2 (ENSRNOG00000033143) #13	Cant1 (ENSRNOG00000003239) #11	Usp36 (ENSRNOG00000028255) #15	Cyth1 (ENSRNOG00000043381) #16	Dnah17 (ENSRNOG00000003028) #17	Pgs1 (ENSRNOG00000002949) #18	Socs3 (ENSRNOG00000063373) #19	Tha1 (ENSRNOG00000045615)	Tmem235 (ENSRNOG00000048231) #20	Birc5 (ENSRNOG00000050819)	Afmid (ENSRNOG00000050205) #21	Tk1 (ENSRNOG00000047314) #22	Syngr2 (ENSRNOG00000050547) #23	LOC688282 (ENSRNOG00000045889) #24	Tmc8 (ENSRNOG00000046086) #25	Tmc6 (ENSRNOG00000053469) #26	Tnrc6c (ENSRNOG00000022395) #27	Septin9 (ENSRNOG00000002807) #28	Sec14l1 (ENSRNOG00000002722) #29	Mgat5b (ENSRNOG00000024954) #30	Mfsd11 (ENSRNOG00000000247) #31	Srsf2 (ENSRNOG00000000248) #32	Mettl23 (ENSRNOG00000000249) #33	Jmjd6 (ENSRNOG00000000250) #34	Mxra7 (ENSRNOG00000042915)	St6galnac1 (ENSRNOG00000000251) #36	St6galnac2 (ENSRNOG00000012083) #37
Rat	MODERN SPECIES	13	ENSRNOG00000063280	ENSRNOG00000062726	Sqor (ENSRNOG00000000172)	Slc30a4 (ENSRNOG00000000170)	Spata5l1 (ENSRNOG00000000169)	Gatm (ENSRNOG00000000168)	Tra2b-ps3 (ENSRNOG00000051627)	LOC120101644 (ENSRNOG00000068036)	LOC120101643 (ENSRNOG00000066870)	Slc28a2 (ENSRNOG00000028668)	Shf (ENSRNOG00000028685)	Duox1 (ENSRNOG00000033348)	Duoxa1 (ENSRNOG00000018005)	Duoxa2 (ENSRNOG00000017805)	Duox2 (ENSRNOG00000017395)	AC112350.1 (ENSRNOG00000047508) #22	Sord (ENSRNOG00000017291)	Terb2 (ENSRNOG00000037178)	Trim69 (ENSRNOG00000017157)	B2m (ENSRNOG00000017123)	Patl2 (ENSRNOG00000017061)	Spg11 (ENSRNOG00000021954)	Eif3j (ENSRNOG00000016459)	Ctdspl2 (ENSRNOG00000022141)	Golm2 (ENSRNOG00000016357)	Frmd5 (ENSRNOG00000016189)	Wdr76 (ENSRNOG00000022491)	Mfap1a (ENSRNOG00000065756)	Hypk (ENSRNOG00000065122)	Serinc4 (ENSRNOG00000015499)	Serf2 (ENSRNOG00000064233)
Rat	MODERN SPECIES	14	Garin1b (ENSRNOG00000006132)	Garin1a (ENSRNOG00000039383)	Impdh1 (ENSRNOG00000020032)	Prrt4 (ENSRNOG00000039388)	Rbm28 (ENSRNOG00000005468)	Lep (ENSRNOG00000045797)	Lrrc4 (ENSRNOG00000008098)	Snd1 (ENSRNOG00000031173)	Pax4 (ENSRNOG00000008020)	Fscn3 (ENSRNOG00000007942)	Arf5 (ENSRNOG00000007806)	Gcc1 (ENSRNOG00000007792)	Zfp800 (ENSRNOG00000007662)	ENSRNOG00000064958	Grm8 (ENSRNOG00000021468)	ENSRNOG00000063353 #22	Pot1 (ENSRNOG00000019986)	Gpr37 (ENSRNOG00000002524)	Tmem229a (ENSRNOG00000069945)	Hyal5 (ENSRNOG00000039466)	Spam1 (ENSRNOG00000007231)	Hyal4 (ENSRNOG00000007212)	Hyal6 (ENSRNOG00000021695)	ENSRNOG00000067771	Wasl (ENSRNOG00000006975)	Lmod2 (ENSRNOG00000045831)	Asb15 (ENSRNOG00000006365)	Ndufa5 (ENSRNOG00000071062)	Iqub (ENSRNOG00000021729)	Slc13a1 (ENSRNOG00000008121)	Tas2r118 (ENSRNOG00000021799)
Kangaroo rat	MODERN SPECIES	326	Cbx2 (ENSDORG00000007598)	Rbfox3 (ENSDORG00000005352) #8	Engase (ENSDORG00000005347) #9	C1qtnf1 (ENSDORG00000030086) #10	Cant1 (ENSDORG00000005395) #11	ENSDORG00000005393	Timp2 (ENSDORG00000023383) #14	ENSDORG00000001610 #15	Cyth1 (ENSDORG00000008525) #16	Dnah17 (ENSDORG00000007811) #17	Pgs1 (ENSDORG00000011674) #18	Socs3 (ENSDORG00000015512) #19	Tha1 (ENSDORG00000025578)	Birc5 (ENSDORG00000004314)	Afmid (ENSDORG00000012803) #21	Tk1 (ENSDORG00000012808) #22	Syngr2 (ENSDORG00000012812) #23	6030468B19Rik (ENSDORG00000006702) #24	Tmc8 (ENSDORG00000006694) #25	ENSDORG00000026735 #26	Tnrc6c (ENSDORG00000004558) #27	Septin9 (ENSDORG00000028516) #28	Sec14l1 (ENSDORG00000007026) #29	Mgat5b (ENSDORG00000012956) #30	Mfsd11 (ENSDORG00000014461) #31	Srsf2 (ENSDORG00000014460) #32	Mettl23 (ENSDORG00000014458) #33	Jmjd6 (ENSDORG00000014457) #34	ENSDORG00000027007 #35	ENSDORG00000010250 #36	St6galnac2 (ENSDORG00000027435) #37
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930.d #36	ENSGT00860000135966	ENSGT00940000160433 #37
Marmotini	ANCESTRAL SPECIES	36	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930.d #36	ENSGT00860000135966	ENSGT00940000160433 #37
Alpin marmot	MODERN SPECIES	90	ENGASE (ENSMMMG00000007432) #9	C1QTNF1 (ENSMMMG00000007453) #10	CANT1 (ENSMMMG00000007459) #11	LGALS3BP (ENSMMMG00000007464) #12	ENSMMMG00000007473 #13	TIMP2 (ENSMMMG00000007493) #14	USP36 (ENSMMMG00000007583) #15	CYTH1 (ENSMMMG00000007804) #16	DNAH17 (ENSMMMG00000007890) #17	PGS1 (ENSMMMG00000008380) #18	SOCS3 (ENSMMMG00000008401) #19	ENSMMMG00000008408	TMEM235 (ENSMMMG00000008425) #20	ENSMMMG00000008432	AFMID (ENSMMMG00000008457) #21	TK1 (ENSMMMG00000008479) #22	SYNGR2 (ENSMMMG00000008495) #23	TMC8 (ENSMMMG00000008504) #25	TMC6 (ENSMMMG00000008802) #26	TNRC6C (ENSMMMG00000008824) #27	SEPTIN9 (ENSMMMG00000008882) #28	SEC14L1 (ENSMMMG00000008919) #29	ENSMMMG00000008987 #30	MFSD11 (ENSMMMG00000008997) #31	METTL23 (ENSMMMG00000009040) #33	JMJD6 (ENSMMMG00000009045) #34	ENSMMMG00000009080 #36	ENSMMMG00000009086 #36	ST6GALNAC2 (ENSMMMG00000009095) #37	PRCD (ENSMMMG00000009119)	CYGB (ENSMMMG00000009125)
Marmotini_b	ANCESTRAL SPECIES	20	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000153123.A.f #13	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373 #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930.d #36	ENSGT00860000135966	ENSGT00940000160433 #37
Squirrel	MODERN SPECIES	194	RBFOX3 (ENSSTOG00000026817) #8	ENGASE (ENSSTOG00000003630) #9	C1QTNF1 (ENSSTOG00000019875) #10	CANT1 (ENSSTOG00000028282) #11	LGALS3BP (ENSSTOG00000027058) #12	TIMP2 (ENSSTOG00000016084) #14	USP36 (ENSSTOG00000016082) #15	CYTH1 (ENSSTOG00000004587) #16	DNAH17 (ENSSTOG00000026418) #17	PGS1 (ENSSTOG00000010898) #18	SOCS3 (ENSSTOG00000010896) #19	ENSSTOG00000022292	TMEM235 (ENSSTOG00000023248) #20	BIRC5 (ENSSTOG00000020326)	AFMID (ENSSTOG00000016387) #21	TK1 (ENSSTOG00000023812) #22	SYNGR2 (ENSSTOG00000006834) #23	TMC8 (ENSSTOG00000028601) #25	TMC6 (ENSSTOG00000026885) #26	TNRC6C (ENSSTOG00000009101) #27	ENSSTOG00000027666 #28	SEC14L1 (ENSSTOG00000014530) #29	MGAT5B (ENSSTOG00000022165) #30	MFSD11 (ENSSTOG00000001451) #31	ENSSTOG00000025265 #32	METTL23 (ENSSTOG00000001447) #33	JMJD6 (ENSSTOG00000001443) #34	ST6GALNAC1 (ENSSTOG00000027866) #36	ENSSTOG00000031427	ST6GALNAC2 (ENSSTOG00000020786) #37	PRCD (ENSSTOG00000030365)
Arctic ground squirrel	MODERN SPECIES	381	ENGASE (ENSUPAG00010004098) #9	C1QTNF1 (ENSUPAG00010004088) #10	CANT1 (ENSUPAG00010004050) #11	LGALS3BP (ENSUPAG00010004036) #12	ENSUPAG00010004031 #13	TIMP2 (ENSUPAG00010004023) #14	USP36 (ENSUPAG00010003894) #15	CYTH1 (ENSUPAG00010003849) #16	DNAH17 (ENSUPAG00010003743) #17	PGS1 (ENSUPAG00010003725) #18	SOCS3 (ENSUPAG00010003713) #19	ENSUPAG00010003692	TMEM235 (ENSUPAG00010003686) #20	BIRC5 (ENSUPAG00010003664)	AFMID (ENSUPAG00010003638) #21	TK1 (ENSUPAG00010003627) #22	SYNGR2 (ENSUPAG00010003617) #23	TMC8 (ENSUPAG00010003599) #25	TMC6 (ENSUPAG00010003577) #26	TNRC6C (ENSUPAG00010003478) #27
Eurasian red squirrel	MODERN SPECIES	12	RBFOX3 (ENSSVLG00005018276) #8	ENGASE (ENSSVLG00005018710) #9	C1QTNF1 (ENSSVLG00005018845) #10	CANT1 (ENSSVLG00005018886) #11	LGALS3BP (ENSSVLG00005018927) #12	TIMP2 (ENSSVLG00005018989) #14	ENSSVLG00005019048 #13	USP36 (ENSSVLG00005019109) #15	CYTH1 (ENSSVLG00005019193) #16	DNAH17 (ENSSVLG00005019564) #17	PGS1 (ENSSVLG00005020209) #18	SOCS3 (ENSSVLG00005020270) #19	ENSSVLG00005020294	BIRC5 (ENSSVLG00005020489)	AFMID (ENSSVLG00005020546) #21	TK1 (ENSSVLG00005020609) #22	SYNGR2 (ENSSVLG00005020697) #23	TMC8 (ENSSVLG00005020762) #25	TMC6 (ENSSVLG00005020990) #26	TNRC6C (ENSSVLG00005021351) #27	SEPTIN9 (ENSSVLG00005021788) #28	SEC14L1 (ENSSVLG00005021864) #29	MGAT5B (ENSSVLG00005021925) #30	MFSD11 (ENSSVLG00005022242) #31	ENSSVLG00005022400 #32	METTL23 (ENSSVLG00005022436) #33	JMJD6 (ENSSVLG00005022517) #34	ENSSVLG00005022580	ST6GALNAC1 (ENSSVLG00005022612) #36	ST6GALNAC2 (ENSSVLG00005022754) #37	PRCD (ENSSVLG00005022841)
Hystricomorpha	ANCESTRAL SPECIES	24	ENSGT00940000159924 #8	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373.k #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Hystricomorpha_a	ANCESTRAL SPECIES	19	ENSGT00940000159924 #8	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373.k #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Guinea pig	MODERN SPECIES	76	CBX2 (ENSCPOG00000005599)	RBFOX3 (ENSCPOG00000021703) #8	ENGASE (ENSCPOG00000010324) #9	C1QTNF1 (ENSCPOG00000034550) #10	CANT1 (ENSCPOG00000011130) #11	LGALS3BP (ENSCPOG00000024999) #12	TIMP2 (ENSCPOG00000008663) #14	USP36 (ENSCPOG00000010458) #15	CYTH1 (ENSCPOG00000000741) #16	DNAH17 (ENSCPOG00000010616) #17	PGS1 (ENSCPOG00000027294) #18	SOCS3 (ENSCPOG00000004247) #19	ENSCPOG00000021388	BIRC5 (ENSCPOG00000040469)	AFMID (ENSCPOG00000021034) #21	TK1 (ENSCPOG00000033845) #22	SYNGR2 (ENSCPOG00000034871) #23	ENSCPOG00000000474 #24	TMC8 (ENSCPOG00000000473) #25	TMC6 (ENSCPOG00000000461) #26	TNRC6C (ENSCPOG00000000467) #27	SEPTIN9 (ENSCPOG00000012711) #28	SEC14L1 (ENSCPOG00000002017) #29	MGAT5B (ENSCPOG00000008729) #30	ENSCPOG00000020782	MFSD11 (ENSCPOG00000004236) #31	JMJD6 (ENSCPOG00000004229) #34	ENSCPOG00000032632 #35	ST6GALNAC1 (ENSCPOG00000002420) #36	ENSCPOG00000024236	ENSCPOG00000024343
Hystricomorpha_b	ANCESTRAL SPECIES	12	ENSGT00940000159924 #8	ENSGT00390000018512 #9	ENSGT00940000161333 #10	ENSGT00390000012872 #11	ENSGT00940000162516 #12	ENSGT00940000158348 #14	ENSGT00940000157948.D #15	ENSGT00940000157519 #16	ENSGT00940000154076.C.c #17	ENSGT00390000002373.k #18	ENSGT00940000159620.a #19	ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25	ENSGT01050000244894.b.b #26	ENSGT00940000157598 #27	ENSGT00940000157195 #28	ENSGT00940000155386.f #29	ENSGT00940000153470.a.b.b #30	ENSGT00390000012918.c #31	ENSGT00940000154883.h #32	ENSGT00510000048008 #33	ENSGT00940000156867 #34	ENSGT00940000163380 #35	ENSGT00940000159930 #36	ENSGT00940000160433 #37
Degu	MODERN SPECIES	74														SOCS3 (ENSODEG00000019991) #19	ENSODEG00000011695	TK1 (ENSODEG00000011369) #22	SYNGR2 (ENSODEG00000013460) #23	ENSODEG00000011422 #26	TNRC6C (ENSODEG00000012499) #27	ENSODEG00000019785	SEPTIN9 (ENSODEG00000012340) #28	ENSODEG00000019912	SEC14L1 (ENSODEG00000012264) #29	MGAT5B (ENSODEG00000010875) #30	MFSD11 (ENSODEG00000011918) #31	ENSODEG00000014748 #32	METTL23 (ENSODEG00000011047) #33	JMJD6 (ENSODEG00000011632) #34	ENSODEG00000010744	CYGB (ENSODEG00000011488)	RHBDF2 (ENSODEG00000010976)
Long-tailed chinchilla	MODERN SPECIES	213	ENGASE (ENSCLAG00000011041) #9	C1QTNF1 (ENSCLAG00000009956) #10	CANT1 (ENSCLAG00000010539) #11	LGALS3BP (ENSCLAG00000011131) #12	TIMP2 (ENSCLAG00000011284) #14	USP36 (ENSCLAG00000012571) #15	CYTH1 (ENSCLAG00000010429) #16	DNAH17 (ENSCLAG00000009080) #17	PGS1 (ENSCLAG00000014556) #18	SOCS3 (ENSCLAG00000011911) #19	ENSCLAG00000014687	ENSCLAG00000010325	TMEM235 (ENSCLAG00000010882) #20	BIRC5 (ENSCLAG00000011970)	AFMID (ENSCLAG00000012562) #21	TK1 (ENSCLAG00000008258) #22	SYNGR2 (ENSCLAG00000008491) #23	ENSCLAG00000011725 #24	TMC8 (ENSCLAG00000012843) #25	TMC6 (ENSCLAG00000015028) #26	TNRC6C (ENSCLAG00000011139) #27	SEPTIN9 (ENSCLAG00000016684) #28	SEC14L1 (ENSCLAG00000017271) #29	MGAT5B (ENSCLAG00000013346) #30	MFSD11 (ENSCLAG00000007261) #31	ENSCLAG00000012450 #32	JMJD6 (ENSCLAG00000010162) #34	ENSCLAG00000008140 #35	ST6GALNAC1 (ENSCLAG00000007640) #36	ST6GALNAC2 (ENSCLAG00000010327) #37	PRCD (ENSCLAG00000009358)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000050047	ENGASE (ENSHGLG00000012682) #9	C1QTNF1 (ENSHGLG00000012387) #10	CANT1 (ENSHGLG00000045626) #11	LGALS3BP (ENSHGLG00000009356) #12	TIMP2 (ENSHGLG00000044441) #14	USP36 (ENSHGLG00000005619) #15	CYTH1 (ENSHGLG00000006215) #16	DNAH17 (ENSHGLG00000016434) #17	ENSHGLG00000014896 #18	SOCS3 (ENSHGLG00000040753) #19	ENSHGLG00000040219	BIRC5 (ENSHGLG00000010313)	AFMID (ENSHGLG00000008814) #21	ENSHGLG00000042507	TK1 (ENSHGLG00000008362) #22	SYNGR2 (ENSHGLG00000008306) #23	C17orf99 (ENSHGLG00000009374) #24	TMC8 (ENSHGLG00000008951) #25	TMC6 (ENSHGLG00000006996) #26	TNRC6C (ENSHGLG00000004809) #27	ENSHGLG00000045488	SEPTIN9 (ENSHGLG00000034038) #28	SEC14L1 (ENSHGLG00000017293) #29	ENSHGLG00000040836	MGAT5B (ENSHGLG00000017285) #30	MFSD11 (ENSHGLG00000017219) #31	ENSHGLG00000017262 #32	METTL23 (ENSHGLG00000034053) #33	JMJD6 (ENSHGLG00000013611) #34	ENSHGLG00000012861
Lagomorpha	ANCESTRAL SPECIES	261											ENSGT00390000014681	ENSGT00390000011615.A #20	ENSGT00510000047537	ENSGT00950000183754	ENSGT00390000011093 #21	ENSGT00390000011309 #22	ENSGT00950000182935.B.a #23	ENSGT01050000244808.F #24	ENSGT01050000244894.a.a.a.b #25
Rabbit	MODERN SPECIES	1003												ENSOCUG00000025890	ENSOCUG00000025794 #20	ENSOCUG00000031126	ENSOCUG00000010048	TK1 (ENSOCUG00000010046) #22	ENSOCUG00000004394 #24	ENSOCUG00000027250 #23
Pika	MODERN SPECIES	3136															ENSOPRG00000008137 #21	TK1 (ENSOPRG00000008125) #22	SYNGR2 (ENSOPRG00000008109) #23	ENSOPRG00000008100 #24	TMC8 (ENSOPRG00000008077) #25