Amniota	ANCESTRAL SPECIES	4	ENSGT00940000165983	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00960000186730	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Mammalia	ANCESTRAL SPECIES	10	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00960000186730	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Theria	ANCESTRAL SPECIES	11	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00960000186730	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Eutheria	ANCESTRAL SPECIES	6	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Glires	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Rodentia	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT01100000263873	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.gc ##7	ENSGT00940000158711 #9	ENSGT01100000264660.a #10	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000038073 #7	ENSHGLG00000036506 #8	LYSMD3 (ENSHGLG00000039807) #9	ENSHGLG00000039707 #10	MBLAC2 (ENSHGLG00000046616) #11	CETN3 (ENSHGLG00000036397) #12	MEF2C (ENSHGLG00000008715) #13	ENSHGLG00000042125 #14	ENSHGLG00000002953 #15	TMEM161B (ENSHGLG00000016157) #16	ENSHGLG00000012753 #17	CCNH (ENSHGLG00000007779) #18	RASA1 (ENSHGLG00000005734) #19	ENSHGLG00000033884 #20	COX7C (ENSHGLG00000032953) #21	EDIL3 (ENSHGLG00000013218) #22	HAPLN1 (ENSHGLG00000034114) #23	VCAN (ENSHGLG00000010244) #24	XRCC4 (ENSHGLG00000032875) #25	TMEM167A (ENSHGLG00000036731) #26	ENSHGLG00000036000 #27	ENSHGLG00000008165 #28	ENSHGLG00000007844 #29
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.gc ##7	ENSGT00940000158711 #9	ENSGT01100000264660.a #10	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.gc ##7	ENSGT00940000158711 #9	ENSGT01100000264660.a #10	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Long-tailed chinchilla	MODERN SPECIES	125	NR2F1 (ENSCLAG00000005596)	ARRDC3 (ENSCLAG00000005661)	ENSCLAG00000005769 ##7	ENSCLAG00000005851 ##7	ENSCLAG00000006022 ##7	LYSMD3 (ENSCLAG00000006052) #9	ENSCLAG00000006118 #10	MBLAC2 (ENSCLAG00000006185) #11	CETN3 (ENSCLAG00000006215) #12	MEF2C (ENSCLAG00000003422) #13	ENSCLAG00000003728	TMEM161B (ENSCLAG00000003850) #16	CCNH (ENSCLAG00000004012) #18	RASA1 (ENSCLAG00000004110) #19	ENSCLAG00000004179 #21	EDIL3 (ENSCLAG00000004305) #22	HAPLN1 (ENSCLAG00000004483) #23	ENSCLAG00000004575 #24	XRCC4 (ENSCLAG00000004677) #25	TMEM167A (ENSCLAG00000004734) #26	Rps23 (ENSCLAG00000004798) ##28	ENSCLAG00000004838	ATG10 (ENSCLAG00000004893) #29	SSBP2 (ENSCLAG00000004986)	ACOT12 (ENSCLAG00000005180)	ZCCHC9 (ENSCLAG00000005289)	CKMT2 (ENSCLAG00000005343)	RASGRF2 (ENSCLAG00000005490)	MSH3 (ENSCLAG00000006074)	ENSCLAG00000005365	ANKRD34B (ENSCLAG00000017846)
Degu	MODERN SPECIES	170									TMEM161B (ENSODEG00000005530) #16	CCNH (ENSODEG00000005505) #18	RASA1 (ENSODEG00000005418) #19	ENSODEG00000019183	ENSODEG00000005383 #21	ENSODEG00000005376	ENSODEG00000005359	EDIL3 (ENSODEG00000005260) #22	HAPLN1 (ENSODEG00000005201) #23	ENSODEG00000005176 #24	ENSODEG00000005159	XRCC4 (ENSODEG00000005147) #25	ENSODEG00000005125 #26	ENSODEG00000005103 #27	RPS23 (ENSODEG00000005092) ##28	ATG10 (ENSODEG00000005078) #29	SSBP2 (ENSODEG00000004975)	ACOT12 (ENSODEG00000004907)	ENSODEG00000004349	CKMT2 (ENSODEG00000004322)	RASGRF2 (ENSODEG00000004227)	MSH3 (ENSODEG00000004134)	FAM151B (ENSODEG00000004092)
Guinea pig	MODERN SPECIES	1	FAM172A (ENSCPOG00000013935)	NR2F1 (ENSCPOG00000005883)	ARRDC3 (ENSCPOG00000002749)	ENSCPOG00000030916 ##7	ENSCPOG00000004008 ##7	ENSCPOG00000035017 ##7	LYSMD3 (ENSCPOG00000031696) #9	ENSCPOG00000036643 #10	MBLAC2 (ENSCPOG00000036054) #11	CETN3 (ENSCPOG00000023805) #12	MEF2C (ENSCPOG00000035485) #13	TMEM161B (ENSCPOG00000003613) #16	CCNH (ENSCPOG00000007894) #18	RASA1 (ENSCPOG00000007883) #19	COX7C (ENSCPOG00000037322) ##21	EDIL3 (ENSCPOG00000006986) #22	HAPLN1 (ENSCPOG00000037148) #23	ENSCPOG00000039167 #24	XRCC4 (ENSCPOG00000012258) #25	TMEM167A (ENSCPOG00000026186) #26	ENSCPOG00000011131 #27	RPS23 (ENSCPOG00000037620) ##28	ENSCPOG00000022705	ATG10 (ENSCPOG00000032098) #29	SSBP2 (ENSCPOG00000001712)	ACOT12 (ENSCPOG00000009718)	ZCCHC9 (ENSCPOG00000003947)	CKMT2 (ENSCPOG00000003941)	RASGRF2 (ENSCPOG00000006307)	MSH3 (ENSCPOG00000011122)	ENSCPOG00000020993
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949.f	ENSGT00390000010283	ENSGT00390000012355.A.a
Marmotini	ANCESTRAL SPECIES	23	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.hc #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949.f	ENSGT00390000010283	ENSGT00390000012355.A.a
Marmotini_b	ANCESTRAL SPECIES	89	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.hc #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.k #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949.f	ENSGT00390000010283
Arctic ground squirrel	MODERN SPECIES	140															ENSUPAG00010007089	EDIL3 (ENSUPAG00010006995) #22	HAPLN1 (ENSUPAG00010006988) #23	ENSUPAG00010006947 #24	ENSUPAG00010006939	XRCC4 (ENSUPAG00010006926) #25	TMEM167A (ENSUPAG00010006916) #26	ENSUPAG00010006903 #27	RPS23 (ENSUPAG00010006892) ##28	ATG10 (ENSUPAG00010006861) #29	SSBP2 (ENSUPAG00010006805)	ACOT12 (ENSUPAG00010006783)	CKMT2 (ENSUPAG00010006756)	ENSUPAG00010006730	ENSUPAG00010006712	ENSUPAG00010006689
Squirrel	MODERN SPECIES	69	ENSSTOG00000019847	ARRDC3 (ENSSTOG00000020450)	ENSSTOG00000031315 #7	ENSSTOG00000034589 #7	LYSMD3 (ENSSTOG00000008678) #9	ENSSTOG00000008664	MBLAC2 (ENSSTOG00000023398) #11	CETN3 (ENSSTOG00000012271) #12	MEF2C (ENSSTOG00000001883) #13	ENSSTOG00000011141 #16	CCNH (ENSSTOG00000000659) #18	RASA1 (ENSSTOG00000000649) #19	COX7C (ENSSTOG00000034413) #21	ENSSTOG00000023841	ENSSTOG00000022943	EDIL3 (ENSSTOG00000003893) #22	HAPLN1 (ENSSTOG00000003875) #23	ENSSTOG00000026716 #24	XRCC4 (ENSSTOG00000023468) #25	ENSSTOG00000031235 #26	ENSSTOG00000005230 #27	ENSSTOG00000000824 #28	ATG10 (ENSSTOG00000005212) #29	SSBP2 (ENSSTOG00000001418)	ACOT12 (ENSSTOG00000001413)	ZCCHC9 (ENSSTOG00000001407)	CKMT2 (ENSSTOG00000001399)	RASGRF2 (ENSSTOG00000001380)	MSH3 (ENSSTOG00000025220)	ENSSTOG00000028494
Alpin marmot	MODERN SPECIES	48								MEF2C (ENSMMMG00000008360) #13	ENSMMMG00000008337	ENSMMMG00000008322 #16	ENSMMMG00000008314 #16	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #18	RASA1 (ENSMMMG00000008245) #19	COX7C (ENSMMMG00000008226) #21	EDIL3 (ENSMMMG00000008149) #22	HAPLN1 (ENSMMMG00000008103) #23	ENSMMMG00000008014 #24	XRCC4 (ENSMMMG00000008004) #25	ENSMMMG00000007986 #26	ENSMMMG00000007968 #27	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953) ##28	ATG10 (ENSMMMG00000007945) #29	SSBP2 (ENSMMMG00000007897)	ACOT12 (ENSMMMG00000007863)	ZCCHC9 (ENSMMMG00000007846)	CKMT2 (ENSMMMG00000007828)	ENSMMMG00000007796	MSH3 (ENSMMMG00000007726)	ENSMMMG00000007718
Eurasian red squirrel	MODERN SPECIES	15	ARRDC3 (ENSSVLG00005007017)	ENSSVLG00005007056	ADGRV1 (ENSSVLG00005007157) #7	ENSSVLG00005007509	LYSMD3 (ENSSVLG00005007523) #9	ENSSVLG00005007556	ENSSVLG00005007572	MBLAC2 (ENSSVLG00005007608) #11	CETN3 (ENSSVLG00005007638) #12	ENSSVLG00005007697	MEF2C (ENSSVLG00005007790) #13	TMEM161B (ENSSVLG00005007974) #16	CCNH (ENSSVLG00005008091) #18	RASA1 (ENSSVLG00005008223) #19	ENSSVLG00005008592 #21	EDIL3 (ENSSVLG00005008647) #22	HAPLN1 (ENSSVLG00005008777) #23	VCAN (ENSSVLG00005008932) #24	XRCC4 (ENSSVLG00005009326) #25	ENSSVLG00005009361 #26	ENSSVLG00005009400 #27	ENSSVLG00005009458 #28	ATG10 (ENSSVLG00005009563) #29	SSBP2 (ENSSVLG00005009766)	ACOT12 (ENSSVLG00005010445)	ZCCHC9 (ENSSVLG00005010577)	CKMT2 (ENSSVLG00005010620)	RASGRF2 (ENSSVLG00005010807)	MSH3 (ENSSVLG00005010940)	ENSSVLG00005011452	ANKRD34B (ENSSVLG00005011548)
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Muroidea	ANCESTRAL SPECIES	4	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00960000186730	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00960000186730.a	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102.c.a #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01070000254013	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102.c.a #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Prairie vole	MODERN SPECIES	6	ENSMOCG00000020099	ENSMOCG00000015077	Arrdc3 (ENSMOCG00000006099)	ENSMOCG00000018170 #7	ENSMOCG00000013307 #7	Lysmd3 (ENSMOCG00000020333) #9	Polr3g (ENSMOCG00000014935)	Mblac2 (ENSMOCG00000011064) #11	Cetn3 (ENSMOCG00000009624) #12	Mef2c (ENSMOCG00000010324) #13	Tmem161b (ENSMOCG00000017125) #16	Ccnh (ENSMOCG00000005334) #18	Rasa1 (ENSMOCG00000020205) #19	Cox7c (ENSMOCG00000017709) #21	ENSMOCG00000016800	Edil3 (ENSMOCG00000001973) #22	Hapln1 (ENSMOCG00000018799) #23	ENSMOCG00000000187 #24	Xrcc4 (ENSMOCG00000015137) #25	Tmem167 (ENSMOCG00000013381) #26	ENSMOCG00000010468	ENSMOCG00000002610	Atp6ap1l (ENSMOCG00000020532) #27	ENSMOCG00000017478 ##28	Atg10 (ENSMOCG00000014675) #29	ENSMOCG00000011514	Ssbp2 (ENSMOCG00000022756)	Acot12 (ENSMOCG00000015615)	Zcchc9 (ENSMOCG00000012433)	Ckmt2 (ENSMOCG00000003563)	Rasgrf2 (ENSMOCG00000015751)
Northern American deer mouse	MODERN SPECIES	6	ENSPEMG00000008658	Ipo11 (ENSPEMG00000018393)	Htr1a (ENSPEMG00000001034)	ENSPEMG00000029158	Rnf180 (ENSPEMG00000021397)	Nt5el (ENSPEMG00000021072)	Rgs7bp (ENSPEMG00000021148)	Shisal2b (ENSPEMG00000026910)	Srek1ip1 (ENSPEMG00000029903)	Cwc27 (ENSPEMG00000018111)	Adamts6 (ENSPEMG00000021478)	ENSPEMG00000022985	ENSPEMG00000016971	ENSPEMG00000028584	ENSPEMG00000027380	Edil3 (ENSPEMG00000008576) #22	ENSPEMG00000015813	Hapln1 (ENSPEMG00000020377) #23	Vcan (ENSPEMG00000021608) #24	Xrcc4 (ENSPEMG00000020663) #25	ENSPEMG00000025116	ENSPEMG00000024390	Tmem167 (ENSPEMG00000025163) #26	ENSPEMG00000029490	ENSPEMG00000031253	Atp6ap1l (ENSPEMG00000020422) #27	ENSPEMG00000030615	Rps23 (ENSPEMG00000020618) ##28	Atg10 (ENSPEMG00000015489) #29	Ssbp2 (ENSPEMG00000020873)	Acot12 (ENSPEMG00000024088)
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.bc #7	ENSGT00940000154880.cc #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102.c.a #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001017247 #7	Lysmd3 (ENSCGRG00001004064) #9	ENSCGRG00001004958	Mblac2 (ENSCGRG00001018393) #11	Cetn3 (ENSCGRG00001000920) #12	ENSCGRG00001003095	ENSCGRG00001007435	Mef2c (ENSCGRG00001006934) #13	Tmem161b (ENSCGRG00001023931) #16	Ccnh (ENSCGRG00001024363) #18	Rasa1 (ENSCGRG00001024641) #19	ENSCGRG00001007486	Cox7c (ENSCGRG00001016442) #21	ENSCGRG00001000944	ENSCGRG00001002366	Edil3 (ENSCGRG00001004897) #22	Hapln1 (ENSCGRG00001024344) #23	ENSCGRG00001014126 #24	Xrcc4 (ENSCGRG00001022340) #25	Tmem167 (ENSCGRG00001013866) #26	Atp6ap1l (ENSCGRG00001003786) #27	Rps23 (ENSCGRG00001005361) ##28	Atg10 (ENSCGRG00001012356) #29	Ssbp2 (ENSCGRG00001010940)	Acot12 (ENSCGRG00001010985)	Zcchc9 (ENSCGRG00001018367)	Ckmt2 (ENSCGRG00001019134)	Rasgrf2 (ENSCGRG00001001184)	Msh3 (ENSCGRG00001012207)	DHFR (ENSCGRG00001012555)	Ankrd34b (ENSCGRG00001007953)
Golden Hamster	MODERN SPECIES	620	Nr2f1 (ENSMAUG00000008658)	Arrdc3 (ENSMAUG00000010410)	ENSMAUG00000010057	ENSMAUG00000008116 #7	ENSMAUG00000021704 #7	Lysmd3 (ENSMAUG00000001625) #9	ENSMAUG00000008528	Mblac2 (ENSMAUG00000019084) #11	Cetn3 (ENSMAUG00000021390) #12	Mef2c (ENSMAUG00000015018) #13	ENSMAUG00000015735	Tmem161b (ENSMAUG00000014575) #16	Ccnh (ENSMAUG00000017406) #18	Rasa1 (ENSMAUG00000011139) #19	Cox7c (ENSMAUG00000005056) #21	Edil3 (ENSMAUG00000009286) #22	ENSMAUG00000022083	Hapln1 (ENSMAUG00000008810) #23	ENSMAUG00000011125 #24	Xrcc4 (ENSMAUG00000006508) #25	Tmem167 (ENSMAUG00000000975) #26	ENSMAUG00000001668	Atp6ap1l (ENSMAUG00000001232) #27	ENSMAUG00000011243 ##28	Atg10 (ENSMAUG00000011026) #29	Ssbp2 (ENSMAUG00000010660)	Acot12 (ENSMAUG00000019809)	Zcchc9 (ENSMAUG00000022026)	Ckmt2 (ENSMAUG00000008773)	Rasgrf2 (ENSMAUG00000016036)	Msh3 (ENSMAUG00000021619)
Murinae	ANCESTRAL SPECIES	24	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01070000254013	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Mus	ANCESTRAL SPECIES	22	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01070000254013	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01070000254013	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000165493	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Mus_B	ANCESTRAL SPECIES	13	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01070000254013	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634.c #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000165493	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Mouse	MODERN SPECIES	4	2210408I21Rik (ENSMUSG00000071252)	Fam172a (ENSMUSG00000064138)	Pou5f2 (ENSMUSG00000093668)	Nr2f1 (ENSMUSG00000069171)	Arrdc3 (ENSMUSG00000074794)	Adgrv1 (ENSMUSG00000069170) #7	Lysmd3 (ENSMUSG00000035840) #9	Polr3g (ENSMUSG00000035834)	Mblac2 (ENSMUSG00000051098) #11	Cetn3 (ENSMUSG00000021537) #12	Mef2c (ENSMUSG00000005583) #13	Tmem161b (ENSMUSG00000035762) #16	Ccnh (ENSMUSG00000021548) #18	Rasa1 (ENSMUSG00000021549) #19	Cox7c (ENSMUSG00000017778) #21	Edil3 (ENSMUSG00000034488) #22	Hapln1 (ENSMUSG00000021613) #23	Vcan (ENSMUSG00000021614) #24	Xrcc4 (ENSMUSG00000021615) #25	Tmem167 (ENSMUSG00000012422) #26	Atp6ap1l (ENSMUSG00000078958) #27	Rps23 (ENSMUSG00000049517) ##28	Atg10 (ENSMUSG00000021619) #29	Ssbp2 (ENSMUSG00000003992)	Acot12 (ENSMUSG00000021620)	Zcchc9 (ENSMUSG00000021621)	Ckmt2 (ENSMUSG00000021622)	Rasgrf2 (ENSMUSG00000021708)	Msh3 (ENSMUSG00000014850)	Gm20379 (ENSMUSG00000100622)	Dhfr (ENSMUSG00000021707)
Mus_C	ANCESTRAL SPECIES	10	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01070000254013	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634.c #18	ENSGT00940000155846 #19	ENSGT01030000235102	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000165493	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Steppe mouse	MODERN SPECIES	3223																Edil3 (ENSMSIG00000030959) #22	Hapln1 (ENSMSIG00000030957) #23	Vcan (ENSMSIG00000030941) #24	Xrcc4 (ENSMSIG00000030931) #25	Tmem167 (ENSMSIG00000030926) #26	Atp6ap1l (ENSMSIG00000030916) #27	Rps23 (ENSMSIG00000030911) ##28	ENSMSIG00000030909	Atg10 (ENSMSIG00000030903) #29	ENSMSIG00000030895	ENSMSIG00000030893	Acot12 (ENSMSIG00000030887)	Zcchc9 (ENSMSIG00000030885)	Ckmt2 (ENSMSIG00000030879)	Rasgrf2 (ENSMSIG00000029126)
spretus	MODERN SPECIES	4	2210408I21Rik (MGP_SPRETEiJ_G0019621)	Fam172a (MGP_SPRETEiJ_G0019622)	Pou5f2 (MGP_SPRETEiJ_G0019623)	Nr2f1 (MGP_SPRETEiJ_G0019624)	Arrdc3 (MGP_SPRETEiJ_G0019625)	Adgrv1 (MGP_SPRETEiJ_G0019626) #7	Lysmd3 (MGP_SPRETEiJ_G0019627) #9	Polr3g (MGP_SPRETEiJ_G0019628)	Mblac2 (MGP_SPRETEiJ_G0019629) #11	Cetn3 (MGP_SPRETEiJ_G0019630) #12	Mef2c (MGP_SPRETEiJ_G0019631) #13	Tmem161b (MGP_SPRETEiJ_G0019632) #16	Ccnh (MGP_SPRETEiJ_G0019633) #18	Rasa1 (MGP_SPRETEiJ_G0019634) #19	MGP_SPRETEiJ_G0019635	Edil3 (MGP_SPRETEiJ_G0019636) #22	Hapln1 (MGP_SPRETEiJ_G0019637) #23	Vcan (MGP_SPRETEiJ_G0019638) #24	Xrcc4 (MGP_SPRETEiJ_G0019639) #25	Tmem167 (MGP_SPRETEiJ_G0019640) #26	MGP_SPRETEiJ_G0019641	Atp6ap1l (MGP_SPRETEiJ_G0019642) #27	Rps23 (MGP_SPRETEiJ_G0019643) ##28	Atg10 (MGP_SPRETEiJ_G0019644) #29	MGP_SPRETEiJ_G0019645	Ssbp2 (MGP_SPRETEiJ_G0019646)	Acot12 (MGP_SPRETEiJ_G0019647)	Zcchc9 (MGP_SPRETEiJ_G0019648)	Ckmt2 (MGP_SPRETEiJ_G0019649)	Rasgrf2 (MGP_SPRETEiJ_G0019650)	Msh3 (MGP_SPRETEiJ_G0019651)
Ryukyu mouse	MODERN SPECIES	4	2210408I21Rik (MGP_CAROLIEiJ_G0018738)	Fam172a (MGP_CAROLIEiJ_G0018739)	Pou5f2 (MGP_CAROLIEiJ_G0018740)	Nr2f1 (MGP_CAROLIEiJ_G0018741)	Arrdc3 (MGP_CAROLIEiJ_G0018742)	Adgrv1 (MGP_CAROLIEiJ_G0018743) #7	Lysmd3 (MGP_CAROLIEiJ_G0018744) #9	Polr3g (MGP_CAROLIEiJ_G0018745)	Mblac2 (MGP_CAROLIEiJ_G0018746) #11	Cetn3 (MGP_CAROLIEiJ_G0018747) #12	Mef2c (MGP_CAROLIEiJ_G0018748) #13	Tmem161b (MGP_CAROLIEiJ_G0018749) #16	Ccnh (MGP_CAROLIEiJ_G0018750) #18	Rasa1 (MGP_CAROLIEiJ_G0018751) #19	Cox7c (MGP_CAROLIEiJ_G0018752) #21	Edil3 (MGP_CAROLIEiJ_G0018753) #22	Hapln1 (MGP_CAROLIEiJ_G0018754) #23	Vcan (MGP_CAROLIEiJ_G0018755) #24	Xrcc4 (MGP_CAROLIEiJ_G0018756) #25	Tmem167 (MGP_CAROLIEiJ_G0018757) #26	MGP_CAROLIEiJ_G0018758	Atp6ap1l (MGP_CAROLIEiJ_G0018759) #27	Rps23 (MGP_CAROLIEiJ_G0018760) ##28	Atg10 (MGP_CAROLIEiJ_G0018761) #29	Ssbp2 (MGP_CAROLIEiJ_G0018762)	Acot12 (MGP_CAROLIEiJ_G0018763)	Zcchc9 (MGP_CAROLIEiJ_G0018764)	Ckmt2 (MGP_CAROLIEiJ_G0018765)	Rasgrf2 (MGP_CAROLIEiJ_G0018766)	Msh3 (MGP_CAROLIEiJ_G0018767)	Dhfr (MGP_CAROLIEiJ_G0018768)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0015817	Fam172a (MGP_PahariEiJ_G0015818)	Pou5f2 (MGP_PahariEiJ_G0015819)	Nr2f1 (MGP_PahariEiJ_G0015820)	Arrdc3 (MGP_PahariEiJ_G0015821)	Adgrv1 (MGP_PahariEiJ_G0015822) #7	Lysmd3 (MGP_PahariEiJ_G0015823) #9	Polr3g (MGP_PahariEiJ_G0015824)	Mblac2 (MGP_PahariEiJ_G0015825) #11	Cetn3 (MGP_PahariEiJ_G0015826) #12	Mef2c (MGP_PahariEiJ_G0015827) #13	Tmem161b (MGP_PahariEiJ_G0015828) #16	Ccnh (MGP_PahariEiJ_G0015829) #18	Rasa1 (MGP_PahariEiJ_G0015830) #19	Cox7c (MGP_PahariEiJ_G0015831) #21	Edil3 (MGP_PahariEiJ_G0015832) #22	Hapln1 (MGP_PahariEiJ_G0015833) #23	Vcan (MGP_PahariEiJ_G0015834) #24	Xrcc4 (MGP_PahariEiJ_G0015835) #25	Tmem167 (MGP_PahariEiJ_G0015836) #26	Vmn1r75 (MGP_PahariEiJ_G0015837)	Atp6ap1l (MGP_PahariEiJ_G0015838) #27	Rps23 (MGP_PahariEiJ_G0015839) ##28	Atg10 (MGP_PahariEiJ_G0015840) #29	Ssbp2 (MGP_PahariEiJ_G0015841)	Acot12 (MGP_PahariEiJ_G0015842)	Zcchc9 (MGP_PahariEiJ_G0015843)	Ckmt2 (MGP_PahariEiJ_G0015844)	Rasgrf2 (MGP_PahariEiJ_G0015845)	Msh3 (MGP_PahariEiJ_G0015846)	Dhfr (MGP_PahariEiJ_G0015847)
Rat	MODERN SPECIES	11	Arrdc3 (ENSRNOG00000045649)	ENSRNOG00000069696	Adgrv1 (ENSRNOG00000016306) #7	Lysmd3 (ENSRNOG00000016298) #9	Polr3g (ENSRNOG00000016260)	Mblac2 (ENSRNOG00000016252) #11	Cetn3 (ENSRNOG00000050877) #12	LOC120100658 (ENSRNOG00000065778)	Mef2c (ENSRNOG00000033134) #13	AABR07007399.1 (ENSRNOG00000049010)	Tmem161b (ENSRNOG00000032414) #16	Ccnh (ENSRNOG00000031656) #18	Rasa1 (ENSRNOG00000029185) #19	Cox7c (ENSRNOG00000030237) #21	ENSRNOG00000064811	Edil3 (ENSRNOG00000033064) #22	ENSRNOG00000062828	Hapln1 (ENSRNOG00000032002) #23	Vcan (ENSRNOG00000029212) #24	Xrcc4 (ENSRNOG00000029966) #25	Tmem167a (ENSRNOG00000016686) #26	Atp6ap1l (ENSRNOG00000040201) #27	Rps23 (ENSRNOG00000016580) #28	Atg10 (ENSRNOG00000016342) #29	Ssbp2 (ENSRNOG00000016213)	Acot12 (ENSRNOG00000061414)	Zcchc9 (ENSRNOG00000051682)	Ckmt2 (ENSRNOG00000055450)	Rasgrf2 (ENSRNOG00000056151)	ENSRNOG00000064838	ENSRNOG00000069130
Upper Galilee mountains blind mole rat	MODERN SPECIES	1658																Edil3 (ENSNGAG00000011097) #22	Hapln1 (ENSNGAG00000001309) #23	ENSNGAG00000003748 #24	Xrcc4 (ENSNGAG00000013424) #25	Tmem167 (ENSNGAG00000018278) #26	Atp6ap1l (ENSNGAG00000000435) #27	Rps23 (ENSNGAG00000006354) ##28	Atg10 (ENSNGAG00000011883) #29	Ssbp2 (ENSNGAG00000011787)	Acot12 (ENSNGAG00000009467)	Zcchc9 (ENSNGAG00000017736)	Ckmt2 (ENSNGAG00000020619)	Rasgrf2 (ENSNGAG00000008843)	Msh3 (ENSNGAG00000014298)	Dhfr (ENSNGAG00000018704)	ENSNGAG00000019496
Lesser Egyptian jerboa	MODERN SPECIES	45	ENSJJAG00000012827 #7	ENSJJAG00000021631 #7	ENSJJAG00000009537 #7	Lysmd3 (ENSJJAG00000023942) #9	ENSJJAG00000001250	Mblac2 (ENSJJAG00000005655) #11	Cetn3 (ENSJJAG00000023827) #12	Mef2c (ENSJJAG00000013244) #13	Tmem161b (ENSJJAG00000024009) #16	ENSJJAG00000011002 #18	Rasa1 (ENSJJAG00000012863) #19	ENSJJAG00000003776 #21	ENSJJAG00000001446	ENSJJAG00000023444	ENSJJAG00000012743	Edil3 (ENSJJAG00000010032) #22	Hapln1 (ENSJJAG00000012871) #23	ENSJJAG00000017589 #24	Xrcc4 (ENSJJAG00000013678) #25	ENSJJAG00000019023 #26	Atp6ap1l (ENSJJAG00000015522) #27	Rps23 (ENSJJAG00000014219) ##28	Atg10 (ENSJJAG00000013587) #29	Ssbp2 (ENSJJAG00000010960)	Acot12 (ENSJJAG00000010888)	Zcchc9 (ENSJJAG00000015479)	Ckmt2 (ENSJJAG00000016214)	Rasgrf2 (ENSJJAG00000016070)	Msh3 (ENSJJAG00000021941)	ENSJJAG00000011657	Ankrd34b (ENSJJAG00000000619)
Kangaroo rat	MODERN SPECIES	347				ENSDORG00000028809	Arrdc3 (ENSDORG00000027054)	Adgrv1 (ENSDORG00000006226) #7	Lysmd3 (ENSDORG00000002417) #9	ENSDORG00000002414	Mblac2 (ENSDORG00000002413) #11	Cetn3 (ENSDORG00000007233) #12	Mef2c (ENSDORG00000026015) #13	Tmem161b (ENSDORG00000012482) #16	Ccnh (ENSDORG00000001438) #18	Rasa1 (ENSDORG00000001435) #19	ENSDORG00000004968	Edil3 (ENSDORG00000000456) #22	ENSDORG00000026224	Hapln1 (ENSDORG00000015896) #23	ENSDORG00000023517 #24	Xrcc4 (ENSDORG00000015883) #25	Tmem167 (ENSDORG00000026989) #26	Atp6ap1l (ENSDORG00000025510) #27	Rps23 (ENSDORG00000001813) ##28	Atg10 (ENSDORG00000009893) #29	ENSDORG00000024485	Ssbp2 (ENSDORG00000001305)	Acot12 (ENSDORG00000001303)	Zcchc9 (ENSDORG00000001300)	Ckmt2 (ENSDORG00000015691)	Rasgrf2 (ENSDORG00000001359)	Msh3 (ENSDORG00000005509)
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01100000265337	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.x #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Rabbit	MODERN SPECIES	2	LYSMD3 (ENSOCUG00000023323) #9	ENSOCUG00000010624	MBLAC2 (ENSOCUG00000026716) #11	CETN3 (ENSOCUG00000005711) #12	MEF2C (ENSOCUG00000029354) #13	TMEM161B (ENSOCUG00000005147) #16	ENSOCUG00000033164	ENSOCUG00000035816	CCNH (ENSOCUG00000004659) #18	RASA1 (ENSOCUG00000004646) #19	ENSOCUG00000039253 ##21	ENSOCUG00000006715	ENSOCUG00000002319	ENSOCUG00000029582	ENSOCUG00000029665	EDIL3 (ENSOCUG00000017338) #22	HAPLN1 (ENSOCUG00000002630) #23	VCAN (ENSOCUG00000002613) #24	XRCC4 (ENSOCUG00000015052) #25	ENSOCUG00000009326 #26	ENSOCUG00000014110 #27	ENSOCUG00000010363 ##28	ENSOCUG00000008736 #29	ENSOCUG00000005365	ACOT12 (ENSOCUG00000005358)	ZCCHC9 (ENSOCUG00000011215)	CKMT2 (ENSOCUG00000011211)	RASGRF2 (ENSOCUG00000003533)	MSH3 (ENSOCUG00000016921)	ENSOCUG00000005127	ENSOCUG00000023992
Pika	MODERN SPECIES	545																ENSOPRG00000016900 #22	ENSOPRG00000016896 #23	ENSOPRG00000016872 #24
Tree shrew	MODERN SPECIES	3197																EDIL3 (ENSTBEG00000013547) #22
Primates	ANCESTRAL SPECIES	8	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Lemuriformes	ANCESTRAL SPECIES	37																ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000013899.a.a.d	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Mouse lemur	MODERN SPECIES	3	RIOK2 (ENSMICG00000037437)	RGMB (ENSMICG00000046794)	CHD1 (ENSMICG00000003914)	FAM174A (ENSMICG00000012302)	ST8SIA4 (ENSMICG00000048096)	SLCO4C1 (ENSMICG00000013545)	SLCO6A1 (ENSMICG00000000142)	PAM (ENSMICG00000004763)	GIN1 (ENSMICG00000029753)	PPIP5K2 (ENSMICG00000004779)	MACIR (ENSMICG00000047126)	ENSMICG00000036226	NUDT12 (ENSMICG00000036782)	ENSMICG00000043126	COX7C (ENSMICG00000007888) #21	EDIL3 (ENSMICG00000014682) #22	HAPLN1 (ENSMICG00000034468) #23	VCAN (ENSMICG00000035948) #24	XRCC4 (ENSMICG00000031093) #25	TMEM167A (ENSMICG00000009860) #26	ENSMICG00000033898	ENSMICG00000013969 #27	RPS23 (ENSMICG00000034642) ##28	ATG10 (ENSMICG00000032372) #29	SSBP2 (ENSMICG00000035810)	ACOT12 (ENSMICG00000047986)	ENSMICG00000029554	CKMT2 (ENSMICG00000016259)	RASGRF2 (ENSMICG00000016229)	ENSMICG00000036427	MSH3 (ENSMICG00000016187)
Lemuriformes_a	ANCESTRAL SPECIES	43																ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000013899.a.a.d	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Coquerels sifaka	MODERN SPECIES	139	ADAMTS20 (ENSPCOG00000017667)	PRICKLE1 (ENSPCOG00000006371)	PPHLN1 (ENSPCOG00000025208)	ZCRB1 (ENSPCOG00000022958)	YAF2 (ENSPCOG00000021954)	GXYLT1 (ENSPCOG00000024287)	ENSPCOG00000017779	PDZRN4 (ENSPCOG00000015632)	CNTN1 (ENSPCOG00000019694)	LRRK2 (ENSPCOG00000024486)	ENSPCOG00000008044	SLC2A13 (ENSPCOG00000013347)	C12orf40 (ENSPCOG00000023054)	ABCD2 (ENSPCOG00000021406)	KIF21A (ENSPCOG00000015969)	EDIL3 (ENSPCOG00000001568) #22	HAPLN1 (ENSPCOG00000023033) #23	VCAN (ENSPCOG00000028583) #24	RAB28 (ENSPCOG00000015364)	NKX3-2 (ENSPCOG00000024252)	BOD1L1 (ENSPCOG00000028312)	ENSPCOG00000026440	CPEB2 (ENSPCOG00000027324)	C1QTNF7 (ENSPCOG00000028186)	CC2D2A (ENSPCOG00000027889)	FBXL5 (ENSPCOG00000015397)	BST1 (ENSPCOG00000021913)	CD38 (ENSPCOG00000012225)	PROM1 (ENSPCOG00000018268)	TAPT1 (ENSPCOG00000000725)	ENSPCOG00000004435
Greater bamboo lemur	MODERN SPECIES	1770																EDIL3 (ENSPSMG00000015270) #22
Bushbaby	MODERN SPECIES	132	ARRDC3 (ENSOGAG00000003067)	ADGRV1 (ENSOGAG00000012173) #7	LYSMD3 (ENSOGAG00000005564) #9	ENSOGAG00000005560	MBLAC2 (ENSOGAG00000005559) #11	CETN3 (ENSOGAG00000002383) #12	MEF2C (ENSOGAG00000028682) #13	ENSOGAG00000034873	TMEM161B (ENSOGAG00000009547) #16	ENSOGAG00000031737	ENSOGAG00000027160	CCNH (ENSOGAG00000010421) #18	RASA1 (ENSOGAG00000000055) #19	ENSOGAG00000029577	ENSOGAG00000032711	EDIL3 (ENSOGAG00000015620) #22	HAPLN1 (ENSOGAG00000009053) #23	VCAN (ENSOGAG00000034403) #24	XRCC4 (ENSOGAG00000009045) #25	TMEM167A (ENSOGAG00000009040) #26	ENSOGAG00000008165 #27	ENSOGAG00000008163 #28	ATG10 (ENSOGAG00000008161) #29	SSBP2 (ENSOGAG00000002548)	ACOT12 (ENSOGAG00000002545)	ENSOGAG00000002543	CKMT2 (ENSOGAG00000002541)	RASGRF2 (ENSOGAG00000002537)	MSH3 (ENSOGAG00000011410)	ENSOGAG00000025320	ANKRD34B (ENSOGAG00000003348)
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000262760	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Tarsier	MODERN SPECIES	5579																EDIL3 (ENSTSYG00000003269) #22
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00910000147249	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00390000007473.h	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.n #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00390000007473.h	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.n #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00390000007473.h	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.n.a.a #21	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a
Gorilla	MODERN SPECIES	18	ARRDC3 (ENSGGOG00000004294)	ENSGGOG00000025546	ENSGGOG00000043133	ADGRV1 (ENSGGOG00000010968) #7	LYSMD3 (ENSGGOG00000043192) #9	POLR3G (ENSGGOG00000000266)	MBLAC2 (ENSGGOG00000002845) #11	CETN3 (ENSGGOG00000009598) #12	MEF2C (ENSGGOG00000002856) #13	TMEM161B (ENSGGOG00000005684) #16	CCNH (ENSGGOG00000005172) #18	RASA1 (ENSGGOG00000001591) #19	ENSGGOG00000036539	COX7C (ENSGGOG00000012393) #21	ENSGGOG00000028128	EDIL3 (ENSGGOG00000025465) #22	ENSGGOG00000043369	HAPLN1 (ENSGGOG00000028491) #23	VCAN (ENSGGOG00000016068) #24	ENSGGOG00000040035	XRCC4 (ENSGGOG00000005197) #25	TMEM167A (ENSGGOG00000042218) #26	ENSGGOG00000013925 #27	RPS23 (ENSGGOG00000025014) ##28	ENSGGOG00000026751	ATG10 (ENSGGOG00000013109) #29	ENSGGOG00000025646	SSBP2 (ENSGGOG00000026863)	ACOT12 (ENSGGOG00000009718)	ZCCHC9 (ENSGGOG00000013790)	CKMT2 (ENSGGOG00000005929)
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.n.a.a #21	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a
Pan	ANCESTRAL SPECIES	21	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000154276.hb.a.e.b.b	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.n.a.a #21	ENSGT00390000018509.a.n.b	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183087.A.a.b.b.g.f	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Chimpanzee	MODERN SPECIES	18	ARRDC3 (ENSPTRG00000017072)	ENSPTRG00000052572	ADGRV1 (ENSPTRG00000017070) #7	ENSPTRG00000052859	LYSMD3 (ENSPTRG00000017069) #9	POLR3G (ENSPTRG00000017068)	MBLAC2 (ENSPTRG00000017067) #11	CETN3 (ENSPTRG00000017066) #12	MEF2C (ENSPTRG00000024214) #13	TMEM161B (ENSPTRG00000017064) #16	CCNH (ENSPTRG00000017063) #18	RASA1 (ENSPTRG00000017062) #19	COX7C (ENSPTRG00000048661) #21	ENSPTRG00000001027	ENSPTRG00000046359	EDIL3 (ENSPTRG00000017057) #22	HAPLN1 (ENSPTRG00000017056) #23	VCAN (ENSPTRG00000017055) #24	ENSPTRG00000045929	XRCC4 (ENSPTRG00000017054) #25	ENSPTRG00000044846	TMEM167A (ENSPTRG00000044250) #26	ATP6AP1L (ENSPTRG00000050446) #27	RPS23 (ENSPTRG00000017052) ##28	ATG10 (ENSPTRG00000017050) #29	ENSPTRG00000039784	ENSPTRG00000045633	SSBP2 (ENSPTRG00000017049)	ACOT12 (ENSPTRG00000017048)	ZCCHC9 (ENSPTRG00000017047)	CKMT2 (ENSPTRG00000024170)
Bonobo	MODERN SPECIES	18	NR2F1 (ENSPPAG00000029692)	ARRDC3 (ENSPPAG00000034772)	ENSPPAG00000024964	ADGRV1 (ENSPPAG00000034954) #7	ENSPPAG00000035937	LYSMD3 (ENSPPAG00000036100) #9	POLR3G (ENSPPAG00000038891)	MBLAC2 (ENSPPAG00000030673) #11	CETN3 (ENSPPAG00000042285) #12	MEF2C (ENSPPAG00000039315) #13	TMEM161B (ENSPPAG00000034458) #16	CCNH (ENSPPAG00000034768) #18	RASA1 (ENSPPAG00000031210) #19	ENSPPAG00000033965 #21	ENSPPAG00000028873	EDIL3 (ENSPPAG00000034784) #22	HAPLN1 (ENSPPAG00000037621) #23	VCAN (ENSPPAG00000026050) #24	ENSPPAG00000015511	XRCC4 (ENSPPAG00000040322) #25	TMEM167A (ENSPPAG00000043917) #26	ENSPPAG00000038667 #27	RPS23 (ENSPPAG00000043006) ##28	ATG10 (ENSPPAG00000033287) #29	ENSPPAG00000004621	ENSPPAG00000039772	SSBP2 (ENSPPAG00000030611)	ACOT12 (ENSPPAG00000041212)	ZCCHC9 (ENSPPAG00000041281)	CKMT2 (ENSPPAG00000040035)	RASGRF2 (ENSPPAG00000043533)
Human	MODERN SPECIES	17	KIAA0825 (ENSG00000185261)	POU5F2 (ENSG00000248483)	FAM172A (ENSG00000113391)	NR2F1 (ENSG00000175745)	ARRDC3 (ENSG00000113369)	ADGRV1 (ENSG00000164199) #7	LYSMD3 (ENSG00000176018) #9	POLR3G (ENSG00000113356)	MBLAC2 (ENSG00000176055) #11	CETN3 (ENSG00000153140) #12	MEF2C (ENSG00000081189) #13	TMEM161B (ENSG00000164180) #16	CCNH (ENSG00000134480) #18	RASA1 (ENSG00000145715) #19	COX7C (ENSG00000127184) #21	EDIL3 (ENSG00000164176) #22	HAPLN1 (ENSG00000145681) #23	VCAN (ENSG00000038427) #24	XRCC4 (ENSG00000152422) #25	TMEM167A (ENSG00000174695) #26	RPS23 (ENSG00000186468) ##28	ATG10 (ENSG00000152348) #29	SSBP2 (ENSG00000145687)	ACOT12 (ENSG00000172497)	ZCCHC9 (ENSG00000131732)	CKMT2 (ENSG00000131730)	RASGRF2 (ENSG00000113319)	MSH3 (ENSG00000113318)	DHFR (ENSG00000228716)	ANKRD34B (ENSG00000189127)	FAM151B (ENSG00000152380)
Orangutan	MODERN SPECIES	18	NR2F1 (ENSPPYG00000015629)	ENSPPYG00000031067	ARRDC3 (ENSPPYG00000015628)	ENSPPYG00000015627	ADGRV1 (ENSPPYG00000015626) #7	ENSPPYG00000031868 #9	POLR3G (ENSPPYG00000015624)	MBLAC2 (ENSPPYG00000033594) #11	CETN3 (ENSPPYG00000015622) #12	MEF2C (ENSPPYG00000033322) #13	TMEM161B (ENSPPYG00000015620) #16	CCNH (ENSPPYG00000015619) #18	RASA1 (ENSPPYG00000015618) #19	ENSPPYG00000030583	COX7C (ENSPPYG00000015616) #21	EDIL3 (ENSPPYG00000015615) #22	HAPLN1 (ENSPPYG00000015614) #23	VCAN (ENSPPYG00000015613) #24	XRCC4 (ENSPPYG00000015612) #25	TMEM167A (ENSPPYG00000031892) #26	ENSPPYG00000015609 #27	RPS23 (ENSPPYG00000030974) ##28	ATG10 (ENSPPYG00000015607) #29	SSBP2 (ENSPPYG00000015606)	ENSPPYG00000015605	ZCCHC9 (ENSPPYG00000015604)	CKMT2 (ENSPPYG00000015603)	RASGRF2 (ENSPPYG00000015602)	MSH3 (ENSPPYG00000015601)	DHFR (ENSPPYG00000036301)	ANKRD34B (ENSPPYG00000015599)
Gibbon	MODERN SPECIES	11	ENSNLEG00000034584	ADGRV1 (ENSNLEG00000013776) #7	LYSMD3 (ENSNLEG00000013761) #9	ENSNLEG00000032117	POLR3G (ENSNLEG00000034746)	MBLAC2 (ENSNLEG00000013746) #11	CETN3 (ENSNLEG00000027875) #12	MEF2C (ENSNLEG00000013673) #13	TMEM161B (ENSNLEG00000013645) #16	CCNH (ENSNLEG00000013604) #18	RASA1 (ENSNLEG00000013467) #19	ENSNLEG00000033043	ENSNLEG00000027612 #21	ENSNLEG00000013459	ENSNLEG00000032525	EDIL3 (ENSNLEG00000013418) #22	ENSNLEG00000035592	HAPLN1 (ENSNLEG00000013393) #23	VCAN (ENSNLEG00000013300) #24	ENSNLEG00000032670	XRCC4 (ENSNLEG00000013239) #25	TMEM167A (ENSNLEG00000013231) #26	ENSNLEG00000027406	ENSNLEG00000013214 #27	RPS23 (ENSNLEG00000013203) ##28	ATG10 (ENSNLEG00000013189) #29	SSBP2 (ENSNLEG00000013116)	ACOT12 (ENSNLEG00000013095)	ZCCHC9 (ENSNLEG00000029214)	CKMT2 (ENSNLEG00000013077)	RASGRF2 (ENSNLEG00000013038)
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00390000012652.ab.b	ENSGT00550000074949
Rhinopithecus	ANCESTRAL SPECIES	511															ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00910000147249	ENSGT00940000156102 #24	ENSGT00940000155367.x	ENSGT00390000017079 #25	ENSGT00940000155186.z #26	ENSGT00390000004856.w.a.b.a
Black snub-nosed monkey	MODERN SPECIES	1135															ENSRBIG00000034034	EDIL3 (ENSRBIG00000037089) #22	ENSRBIG00000007190	ENSRBIG00000005321	ENSRBIG00000041948	HAPLN1 (ENSRBIG00000034867) #23	ENSRBIG00000027612	VCAN (ENSRBIG00000031473) #24
Golden snub-nosed monkey	MODERN SPECIES	1935															ENSRROG00000043741	EDIL3 (ENSRROG00000045105) #22	ENSRROG00000001366
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00530000063169.a.b	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b.a #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Vervet Monkey	MODERN SPECIES	23	POU5F2 (ENSCSAG00000019424)	NR2F1 (ENSCSAG00000014638)	ENSCSAG00000014656	ARRDC3 (ENSCSAG00000014681)	ADGRV1 (ENSCSAG00000014718) #7	LYSMD3 (ENSCSAG00000014732) #9	ENSCSAG00000014737	MBLAC2 (ENSCSAG00000014742) #11	CETN3 (ENSCSAG00000014746) #12	MEF2C (ENSCSAG00000014772) #13	ENSCSAG00000019423	CCNH (ENSCSAG00000014778) #18	RASA1 (ENSCSAG00000014793) #19	ENSCSAG00000014810 #21	ENSCSAG00000014822	EDIL3 (ENSCSAG00000014835) #22	ENSCSAG00000014846	HAPLN1 (ENSCSAG00000014853) #23	VCAN (ENSCSAG00000014887) #24	XRCC4 (ENSCSAG00000014902) #25	TMEM167A (ENSCSAG00000014909) #26	ENSCSAG00000019422	ENSCSAG00000014915 #27	ENSCSAG00000014919 ##28	ATG10 (ENSCSAG00000014925) #29	SSBP2 (ENSCSAG00000014933)	ACOT12 (ENSCSAG00000014944)	ENSCSAG00000014955	CKMT2 (ENSCSAG00000014966)	RASGRF2 (ENSCSAG00000014982)	MSH3 (ENSCSAG00000015082)
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00530000063169.a.b	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b.a #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b.a #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00940000166143.A.a.b.b.b.b.a.b.a.a	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00940000170471.I.b	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.a.c
Crab-eating macaque	MODERN SPECIES	16	ADGRV1 (ENSMFAG00000032687) #7	LYSMD3 (ENSMFAG00000034572) #9	POLR3G (ENSMFAG00000057504)	MBLAC2 (ENSMFAG00000001314) #11	CETN3 (ENSMFAG00000036901) #12	ENSMFAG00000060678	MEF2C (ENSMFAG00000044479) #13	ENSMFAG00000058851	TMEM161B (ENSMFAG00000043023) #16	CCNH (ENSMFAG00000008721) #18	RASA1 (ENSMFAG00000037698) #19	COX7C (ENSMFAG00000035190) #21	ENSMFAG00000063591	ENSMFAG00000048019	ENSMFAG00000059027	EDIL3 (ENSMFAG00000039875) #22	HAPLN1 (ENSMFAG00000047220) #23	VCAN (ENSMFAG00000032675) #24	XRCC4 (ENSMFAG00000013259) #25	TMEM167A (ENSMFAG00000064295) #26	ENSMFAG00000030373	ENSMFAG00000045507 #27	RPS23 (ENSMFAG00000046092) ##28	ATG10 (ENSMFAG00000031807) #29	SSBP2 (ENSMFAG00000044245)	ACOT12 (ENSMFAG00000000202)	ZCCHC9 (ENSMFAG00000001943)	CKMT2 (ENSMFAG00000000490)	RASGRF2 (ENSMFAG00000003054)	ENSMFAG00000060013	ENSMFAG00000061632
Rhesus	MODERN SPECIES	16	ADGRV1 (ENSMMUG00000018976) #7	LYSMD3 (ENSMMUG00000018974) #9	POLR3G (ENSMMUG00000018972)	MBLAC2 (ENSMMUG00000056954) #11	CETN3 (ENSMMUG00000020180) #12	MEF2C (ENSMMUG00000019836) #13	ENSMMUG00000053232	ENSMMUG00000062486	TMEM161B (ENSMMUG00000009319) #16	CCNH (ENSMMUG00000003248) #18	RASA1 (ENSMMUG00000003245) #19	COX7C (ENSMMUG00000040409) #21	ENSMMUG00000063160	ENSMMUG00000039961	ENSMMUG00000051689	EDIL3 (ENSMMUG00000007661) #22	HAPLN1 (ENSMMUG00000061282) #23	VCAN (ENSMMUG00000011513) #24	XRCC4 (ENSMMUG00000064265) #25	TMEM167A (ENSMMUG00000046560) #26	ATP6AP1L (ENSMMUG00000029954) #27	RPS23 (ENSMMUG00000003578) ##28	ATG10 (ENSMMUG00000003577) #29	SSBP2 (ENSMMUG00000017583)	ACOT12 (ENSMMUG00000020656)	ZCCHC9 (ENSMMUG00000020655)	CKMT2 (ENSMMUG00000006932)	RASGRF2 (ENSMMUG00000039944)	MSH3 (ENSMMUG00000018284)	ENSMMUG00000018283	ANKRD34B (ENSMMUG00000019460)
Pig-tailed macaque	MODERN SPECIES	533												CCNH (ENSMNEG00000041575) #18	RASA1 (ENSMNEG00000028470) #19	ENSMNEG00000044013 #21	ENSMNEG00000028341	EDIL3 (ENSMNEG00000042863) #22	HAPLN1 (ENSMNEG00000030175) #23	VCAN (ENSMNEG00000036869) #24	ENSMNEG00000043712	XRCC4 (ENSMNEG00000045552) #25	TMEM167A (ENSMNEG00000041326) #26	ENSMNEG00000008902 #27	ENSMNEG00000034342 #28	ATG10 (ENSMNEG00000042013) #29	SSBP2 (ENSMNEG00000029101)	ACOT12 (ENSMNEG00000044852)	ZCCHC9 (ENSMNEG00000040582)	CKMT2 (ENSMNEG00000029549)	RASGRF2 (ENSMNEG00000029381)	MSH3 (ENSMNEG00000032256)	ENSMNEG00000033103
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00910000147795	ENSGT00950000183105.B.b	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b.a #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Olive baboon	MODERN SPECIES	15	MBLAC2 (ENSPANG00000001530) #11	CETN3 (ENSPANG00000010181) #12	ENSPANG00000046555	ENSPANG00000044443	MEF2C (ENSPANG00000010944) #13	ENSPANG00000037642	ENSPANG00000049972	TMEM161B (ENSPANG00000004600) #16	CCNH (ENSPANG00000023952) #18	RASA1 (ENSPANG00000017878) #19	ENSPANG00000040921 #21	ENSPANG00000051054	ENSPANG00000047004	ENSPANG00000038247	ENSPANG00000046816	EDIL3 (ENSPANG00000002875) #22	HAPLN1 (ENSPANG00000043592) #23	VCAN (ENSPANG00000000300) #24	XRCC4 (ENSPANG00000003281) #25	TMEM167A (ENSPANG00000049105) #26	ENSPANG00000030703 #27	RPS23 (ENSPANG00000013597) ##28	ATG10 (ENSPANG00000003860) #29	ENSPANG00000041391	SSBP2 (ENSPANG00000023319)	ACOT12 (ENSPANG00000025089)	ZCCHC9 (ENSPANG00000013570)	CKMT2 (ENSPANG00000011809)	RASGRF2 (ENSPANG00000010568)	MSH3 (ENSPANG00000017879)	ENSPANG00000007428
Cercopithecinae_d	ANCESTRAL SPECIES	48	ENSGT00910000147795	ENSGT00950000183105.B.b	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.e.a #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.o.b.a #21	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00910000147249	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Sooty mangabey	MODERN SPECIES	296	ENSCATG00000033426	ENSCATG00000037605	ARRDC3 (ENSCATG00000011987)	ENSCATG00000013474	ADGRV1 (ENSCATG00000042370) #7	LYSMD3 (ENSCATG00000028915) #9	ENSCATG00000044864	MBLAC2 (ENSCATG00000019268) #11	CETN3 (ENSCATG00000031135) #12	MEF2C (ENSCATG00000041293) #13	TMEM161B (ENSCATG00000042980) #16	CCNH (ENSCATG00000041554) #18	RASA1 (ENSCATG00000014585) #19	ENSCATG00000034062 #21	ENSCATG00000035380	EDIL3 (ENSCATG00000036627) #22	HAPLN1 (ENSCATG00000037967) #23	VCAN (ENSCATG00000033955) #24	ENSCATG00000045056	XRCC4 (ENSCATG00000031467) #25	TMEM167A (ENSCATG00000038227) #26	ENSCATG00000040706 #27	ENSCATG00000041062 #28	ATG10 (ENSCATG00000032132) #29	SSBP2 (ENSCATG00000042579)	ACOT12 (ENSCATG00000041450)	ZCCHC9 (ENSCATG00000042586)	CKMT2 (ENSCATG00000035078)	RASGRF2 (ENSCATG00000030532)	MSH3 (ENSCATG00000033755)	ENSCATG00000042395
Drill	MODERN SPECIES	1209															ENSMLEG00000023884	EDIL3 (ENSMLEG00000032436) #22	HAPLN1 (ENSMLEG00000030540) #23	VCAN (ENSMLEG00000035624) #24	ENSMLEG00000039919	XRCC4 (ENSMLEG00000037000) #25	TMEM167A (ENSMLEG00000028609) #26	ENSMLEG00000022512	ENSMLEG00000038446 #27	ENSMLEG00000034613 #28	ENSMLEG00000034472 #29
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00390000003924.r	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.q.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00910000147249	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.b.a
Mas night monkey	MODERN SPECIES	992	ENSANAG00000024012	ENSANAG00000033833	ENSANAG00000030581	ARRDC3 (ENSANAG00000025287)	ADGRV1 (ENSANAG00000015354) #7	LYSMD3 (ENSANAG00000026299) #9	POLR3G (ENSANAG00000005030)	MBLAC2 (ENSANAG00000025030) #11	CETN3 (ENSANAG00000023255) #12	MEF2C (ENSANAG00000037478) #13	ENSANAG00000019321	TMEM161B (ENSANAG00000027071) #16	CCNH (ENSANAG00000037104) #18	RASA1 (ENSANAG00000029874) #19	COX7C (ENSANAG00000030476) #21	EDIL3 (ENSANAG00000024200) #22	HAPLN1 (ENSANAG00000036107) #23	VCAN (ENSANAG00000027105) #24	XRCC4 (ENSANAG00000032084) #25	TMEM167A (ENSANAG00000036200) #26	ENSANAG00000035867	ENSANAG00000027961	ENSANAG00000033330 #27	RPS23 (ENSANAG00000019218) ##28	ATG10 (ENSANAG00000029651) #29	SSBP2 (ENSANAG00000021537)	ACOT12 (ENSANAG00000032859)	ZCCHC9 (ENSANAG00000021689)	CKMT2 (ENSANAG00000037627)	RASGRF2 (ENSANAG00000028680)	ENSANAG00000035978
Cebidae	ANCESTRAL SPECIES	6	ENSGT00530000063907.c	ENSGT00390000003924.r	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.q.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00910000147249	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.`b.a.b.a
Marmoset	MODERN SPECIES	11	ARRDC3 (ENSCJAG00000010525)	ADGRV1 (ENSCJAG00000010578) #7	LYSMD3 (ENSCJAG00000066019) #9	ENSCJAG00000010747	MBLAC2 (ENSCJAG00000039786) #11	CETN3 (ENSCJAG00000010761) #12	MEF2C (ENSCJAG00000010799) #13	ENSCJAG00000084377	TMEM161B (ENSCJAG00000041282) #16	CCNH (ENSCJAG00000010902) #18	RASA1 (ENSCJAG00000010941) #19	ENSCJAG00000087022 #21	ENSCJAG00000083390	ENSCJAG00000072368	ENSCJAG00000073835	EDIL3 (ENSCJAG00000040007) #22	ENSCJAG00000077518	ENSCJAG00000085055	HAPLN1 (ENSCJAG00000063471) #23	ENSCJAG00000078201	VCAN (ENSCJAG00000011161) #24	XRCC4 (ENSCJAG00000011227) #25	ENSCJAG00000077051 #26	ENSCJAG00000042632 #27	RPS23 (ENSCJAG00000011247) ##28	ENSCJAG00000072035	ENSCJAG00000062963	SSBP2 (ENSCJAG00000019418)	ENSCJAG00000072994	ACOT12 (ENSCJAG00000019453)	ENSCJAG00000072298
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00530000063907.c	ENSGT00390000003924.r	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00910000146984	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00940000164875	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.q.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00910000147249	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT01100000266943	ENSGT00940000161999.t.a.a.b.b.a	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Bolivian squirrel monkey	MODERN SPECIES	43	ARRDC3 (ENSSBOG00000022253)	ADGRV1 (ENSSBOG00000031018) #7	LYSMD3 (ENSSBOG00000036033) #9	ENSSBOG00000029447	MBLAC2 (ENSSBOG00000022218) #11	CETN3 (ENSSBOG00000033177) #12	MEF2C (ENSSBOG00000018897) #13	ENSSBOG00000031181	ENSSBOG00000019037	TMEM161B (ENSSBOG00000024706) #16	ENSSBOG00000028202	CCNH (ENSSBOG00000019490) #18	RASA1 (ENSSBOG00000024025) #19	COX7C (ENSSBOG00000023483) #21	ENSSBOG00000022503	EDIL3 (ENSSBOG00000034196) #22	HAPLN1 (ENSSBOG00000020151) #23	VCAN (ENSSBOG00000030525) #24	XRCC4 (ENSSBOG00000033444) #25	TMEM167A (ENSSBOG00000031099) #26	ENSSBOG00000033727	ENSSBOG00000035740	ENSSBOG00000034795	ENSSBOG00000025673	ENSSBOG00000019560 #27	RPS23 (ENSSBOG00000025991) ##28	ATG10 (ENSSBOG00000032903) #29	ENSSBOG00000032482	SSBP2 (ENSSBOG00000026483)	ACOT12 (ENSSBOG00000032766)	ENSSBOG00000034293
Capuchin	MODERN SPECIES	16	ADGRV1 (ENSCCAG00000034134) #7	LYSMD3 (ENSCCAG00000032472) #9	POLR3G (ENSCCAG00000032288)	MBLAC2 (ENSCCAG00000027096) #11	CETN3 (ENSCCAG00000021491) #12	ENSCCAG00000030581	MEF2C (ENSCCAG00000015818) #13	TMEM161B (ENSCCAG00000025610) #16	ENSCCAG00000033383	CCNH (ENSCCAG00000031898) #18	RASA1 (ENSCCAG00000027537) #19	ENSCCAG00000012037	ENSCCAG00000034902	COX7C (ENSCCAG00000021409) #21	ENSCCAG00000036566	EDIL3 (ENSCCAG00000010698) #22	HAPLN1 (ENSCCAG00000023370) #23	ENSCCAG00000029740	VCAN (ENSCCAG00000026158) #24	XRCC4 (ENSCCAG00000021185) #25	TMEM167A (ENSCCAG00000021704) #26	ENSCCAG00000035743	ENSCCAG00000037444	ENSCCAG00000032509	ENSCCAG00000032614 #27	RPS23 (ENSCCAG00000022444) ##28	ENSCCAG00000023908	ATG10 (ENSCCAG00000021612) #29	SSBP2 (ENSCCAG00000029743)	ACOT12 (ENSCCAG00000010251)	ZCCHC9 (ENSCCAG00000034082)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158144 #22
Hedgehog	MODERN SPECIES	5757																EDIL3 (ENSEEUG00000001730) #22
Common shrew	MODERN SPECIES	4474																EDIL3 (ENSSARG00000003465) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z #21	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.y.a #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977
Suina	ANCESTRAL SPECIES	11	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01100000264016	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z #21	ENSGT00390000018086.y.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Pig	MODERN SPECIES	10	ARRDC3 (ENSSSCG00000014156)	ADGRV1 (ENSSSCG00000035025) #7	LYSMD3 (ENSSSCG00000024193) #9	ENSSSCG00000026233	MBLAC2 (ENSSSCG00000014152) #11	CETN3 (ENSSSCG00000014151) #12	MEF2C (ENSSSCG00000014149) #13	ENSSSCG00000050823	TMEM161B (ENSSSCG00000014148) #16	ENSSSCG00000048763	CCNH (ENSSSCG00000014147) #18	RASA1 (ENSSSCG00000014146) #19	ENSSSCG00000053558	COX7C (ENSSSCG00000040325) #21	ENSSSCG00000061130	EDIL3 (ENSSSCG00000026780) #22	HAPLN1 (ENSSSCG00000014137) #23	ENSSSCG00000038060	VCAN (ENSSSCG00000014136) #24	ENSSSCG00000045510	TMEM167A (ENSSSCG00000056442) #26	ENSSSCG00000057529	ENSSSCG00000047325	ENSSSCG00000014132 #27	RPS23 (ENSSSCG00000014133) ##28	ENSSSCG00000049576	ATG10 (ENSSSCG00000025210) #29	SSBP2 (ENSSSCG00000035757)	ACOT12 (ENSSSCG00000036095)	ZCCHC9 (ENSSSCG00000014129)	CKMT2 (ENSSSCG00000014128)
Chacoan peccary	MODERN SPECIES	204	KIAA0825 (ENSCWAG00000019715)	ENSCWAG00000019685	FAM172A (ENSCWAG00000019628)	NR2F1 (ENSCWAG00000019554)	ARRDC3 (ENSCWAG00000019512)	ADGRV1 (ENSCWAG00000019126) #7	LYSMD3 (ENSCWAG00000019073) #9	ENSCWAG00000019055	MBLAC2 (ENSCWAG00000019036) #11	CETN3 (ENSCWAG00000019002) #12	MEF2C (ENSCWAG00000018755) #13	TMEM161B (ENSCWAG00000018662) #16	CCNH (ENSCWAG00000018608) #18	RASA1 (ENSCWAG00000018315) #19	COX7C (ENSCWAG00000018267) #21	EDIL3 (ENSCWAG00000018152) #22	HAPLN1 (ENSCWAG00000018099) #23	VCAN (ENSCWAG00000017930) #24	XRCC4 (ENSCWAG00000017866) #25	TMEM167A (ENSCWAG00000017841) #26	ENSCWAG00000017781 #27	RPS23 (ENSCWAG00000017751) ##28	ATG10 (ENSCWAG00000017706) #29	SSBP2 (ENSCWAG00000017558)	ACOT12 (ENSCWAG00000017413)	ZCCHC9 (ENSCWAG00000017376)	CKMT2 (ENSCWAG00000017315)	RASGRF2 (ENSCWAG00000017055)	MSH3 (ENSCWAG00000013447)	ENSCWAG00000013255	ANKRD34B (ENSCWAG00000013240)
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z #21	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.y.a #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000154925.h	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00960000190376.a	ENSGT00940000157995 #12	ENSGT00510000047137.c.b	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.y.a #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.k.a.a
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000155411.c	ENSGT01000000220781	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00960000190376.a	ENSGT00940000157995 #12	ENSGT00510000047137.c.b	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.y.a #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.k.a.a
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000155411.c	ENSGT01000000220781	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00960000190376.a	ENSGT00940000157995 #12	ENSGT00510000047137.c.b	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.y.a #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.s.b #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.k.a.a
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000155411.c	ENSGT01000000220781	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00960000190376.a	ENSGT00940000157995 #12	ENSGT00510000047137.c.b	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.y.a.c #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.s.b #26	ENSGT00940000154612.n	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000155411.c	ENSGT01000000220781	ENSGT00940000154880.lb #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00960000190376.a	ENSGT00940000157995 #12	ENSGT00510000047137.c.b	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.y.a.c #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000155186.s.b #26	ENSGT00940000154612.n	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Narwhal	MODERN SPECIES	298	ARRDC3 (ENSMMNG00015006011)	ENSMMNG00015006000	ADGRV1 (ENSMMNG00015005901) #7	LYSMD3 (ENSMMNG00015005843) #9	ENSMMNG00015005829	MBLAC2 (ENSMMNG00015005814) #11	ENSMMNG00015005807	CETN3 (ENSMMNG00015005786) #12	ENSMMNG00015005764	MEF2C (ENSMMNG00015005678) #13	ENSMMNG00015005616	TMEM161B (ENSMMNG00015005563) #16	CCNH (ENSMMNG00015005516) #18	RASA1 (ENSMMNG00015005429) #19	ENSMMNG00015005384 #21	EDIL3 (ENSMMNG00015005343) #22	ENSMMNG00015005323	HAPLN1 (ENSMMNG00015005308) #23	VCAN (ENSMMNG00015005267) #24	ENSMMNG00015005224	XRCC4 (ENSMMNG00015005213) #25	ENSMMNG00015005197 #26	ENSMMNG00015009107	ENSMMNG00015009097 #27	ENSMMNG00015009087 ##28	ATG10 (ENSMMNG00015009080) #29	SSBP2 (ENSMMNG00015009022)	ACOT12 (ENSMMNG00015008974)	ZCCHC9 (ENSMMNG00015008963)	CKMT2 (ENSMMNG00015008945)	RASGRF2 (ENSMMNG00015008907)
Beluga whale	MODERN SPECIES	71	ARRDC3 (ENSDLEG00000012589)	ENSDLEG00000012603	ENSDLEG00000012615 #7	ENSDLEG00000012741 #7	LYSMD3 (ENSDLEG00000012794) #9	POLR3G (ENSDLEG00000012841)	MBLAC2 (ENSDLEG00000012852) #11	ENSDLEG00000012856	CETN3 (ENSDLEG00000012868) #12	MEF2C (ENSDLEG00000012940) #13	ENSDLEG00000012966	TMEM161B (ENSDLEG00000012991) #16	CCNH (ENSDLEG00000013031) #18	RASA1 (ENSDLEG00000013059) #19	ENSDLEG00000013150 #21	EDIL3 (ENSDLEG00000013171) #22	HAPLN1 (ENSDLEG00000013237) #23	VCAN (ENSDLEG00000013258) #24	XRCC4 (ENSDLEG00000013308) #25	ENSDLEG00000013342 #26	ENSDLEG00000013363	RPS23 (ENSDLEG00000013381) #28	ATG10 (ENSDLEG00000013394) #29	SSBP2 (ENSDLEG00000013445)	ACOT12 (ENSDLEG00000013510)	ZCCHC9 (ENSDLEG00000013535)	CKMT2 (ENSDLEG00000013554)	RASGRF2 (ENSDLEG00000013582)	MSH3 (ENSDLEG00000013710)	DHFR (ENSDLEG00000013740)	ANKRD34B (ENSDLEG00000013781)
Vaquita	MODERN SPECIES	14	ENSPSNG00000001514	ENSPSNG00000001530	ARRDC3 (ENSPSNG00000001549)	ADGRV1 (ENSPSNG00000001637) #7	LYSMD3 (ENSPSNG00000001854) #9	ENSPSNG00000001891	MBLAC2 (ENSPSNG00000001913) #11	ENSPSNG00000001923	CETN3 (ENSPSNG00000001948) #12	MEF2C (ENSPSNG00000002155) #13	ENSPSNG00000002482	TMEM161B (ENSPSNG00000002519) #16	CCNH (ENSPSNG00000002571) #18	RASA1 (ENSPSNG00000002638) #19	ENSPSNG00000002806 #21	EDIL3 (ENSPSNG00000002853) #22	ENSPSNG00000002915	HAPLN1 (ENSPSNG00000002928) #23	VCAN (ENSPSNG00000002974) #24	XRCC4 (ENSPSNG00000003042) #25	ENSPSNG00000003056	TMEM167A (ENSPSNG00000003071) #26	ENSPSNG00000003094	RPS23 (ENSPSNG00000003143) ##28	ATG10 (ENSPSNG00000003163) #29	SSBP2 (ENSPSNG00000003238)	ACOT12 (ENSPSNG00000003353)	ZCCHC9 (ENSPSNG00000003398)	CKMT2 (ENSPSNG00000003429)	RASGRF2 (ENSPSNG00000003476)	MSH3 (ENSPSNG00000003545)
Dolphin	MODERN SPECIES	1509																EDIL3 (ENSTTRG00000013008) #22
Sperm whale	MODERN SPECIES	19	ENSPCTG00005007095	ADGRV1 (ENSPCTG00005006712) #7	LYSMD3 (ENSPCTG00005006625) #9	POLR3G (ENSPCTG00005006608)	MBLAC2 (ENSPCTG00005006581) #11	CETN3 (ENSPCTG00005006544) #12	MEF2C (ENSPCTG00005006331) #13	ENSPCTG00005006281	TMEM161B (ENSPCTG00005006187) #16	ENSPCTG00005006131	ENSPCTG00005006111	CCNH (ENSPCTG00005006072) #18	RASA1 (ENSPCTG00005005901) #19	COX7C (ENSPCTG00005005822) #21	ENSPCTG00005005787	EDIL3 (ENSPCTG00005005744) #22	ENSPCTG00005005670	HAPLN1 (ENSPCTG00005005652) #23	VCAN (ENSPCTG00005005066) #24	XRCC4 (ENSPCTG00005004952) #25	ENSPCTG00005004922 #26	ENSPCTG00005004898 #27	RPS23 (ENSPCTG00005004877) ##28	ENSPCTG00005004844	ATG10 (ENSPCTG00005004830) #29	SSBP2 (ENSPCTG00005004708)	ACOT12 (ENSPCTG00005004589)	ZCCHC9 (ENSPCTG00005004543)	MiCK (ENSPCTG00005004510)	RASGRF2 (ENSPCTG00005004383)	MSH3 (ENSPCTG00005004305)
Blue whale	MODERN SPECIES	14	ENSBMSG00010001567	ENSBMSG00010001561	ADGRV1 (ENSBMSG00010001495) #7	LYSMD3 (ENSBMSG00010001422) #9	ENSBMSG00010001406	MBLAC2 (ENSBMSG00010001393) #11	ENSBMSG00010001381	CETN3 (ENSBMSG00010001364) #12	ENSBMSG00010001350	MEF2C (ENSBMSG00010000526) #13	TMEM161B (ENSBMSG00010000201) #16	ENSBMSG00010000148	CCNH (ENSBMSG00010000119) #18	RASA1 (ENSBMSG00010000084) #19	ENSBMSG00010000023 #21	EDIL3 (ENSBMSG00010007186) #22	ENSBMSG00010007170	HAPLN1 (ENSBMSG00010007160) #23	VCAN (ENSBMSG00010007115) #24	XRCC4 (ENSBMSG00010007092) #25	ENSBMSG00010007076 #26	RPS23 (ENSBMSG00010007033) ##28	ATG10 (ENSBMSG00010007011) #29	SSBP2 (ENSBMSG00010006966)	ACOT12 (ENSBMSG00010006914)	ENSBMSG00010006899	CKMT2 (ENSBMSG00010006888)	RASGRF2 (ENSBMSG00010006843)	MSH3 (ENSBMSG00010006814)	ENSBMSG00010006789	ANKRD34B (ENSBMSG00010006782)
Pecora	ANCESTRAL SPECIES		ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.h.a.b.a.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977	ENSGT00390000010283
Percora_a	ANCESTRAL SPECIES		ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.h.a.b.a.a.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977	ENSGT00390000010283.i
Bovidae	ANCESTRAL SPECIES		ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.h.a.b.a.a.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977	ENSGT00390000010283.i
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00390000013276.o.b	ENSGT00940000157492.b #13	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t.c.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977	ENSGT00390000010283.i
Bos	ANCESTRAL SPECIES	3	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00390000013276.o.b	ENSGT00940000157492.b #13	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t.c.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977	ENSGT00390000010283.i
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00390000013276.o.b	ENSGT00940000157492.b #13	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000011776.i.b.a	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t.c.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977	ENSGT00390000010283.i
Wild yak	MODERN SPECIES	1555															ENSBMUG00000007634	EDIL3 (ENSBMUG00000007651) #22	ENSBMUG00000007659	HAPLN1 (ENSBMUG00000007663) #23	VCAN (ENSBMUG00000007694) #24	XRCC4 (ENSBMUG00000007761) #25	ENSBMUG00000007771	ENSBMUG00000007780 #26	ENSBMUG00000007795 #27	RPS23 (ENSBMUG00000007812) ##28	ATG10 (ENSBMUG00000007821) #29
Domestic yak	MODERN SPECIES	27	ADGRV1 (ENSBGRG00000005790) #7	LYSMD3 (ENSBGRG00000005743) #9	ENSBGRG00000005682	MBLAC2 (ENSBGRG00000005658) #11	CETN3 (ENSBGRG00000005546) #12	ENSBGRG00000005517	ENSBGRG00000005495	MEF2C (ENSBGRG00000003562) #13	TMEM161B (ENSBGRG00000003465) #16	ENSBGRG00000003441	CCNH (ENSBGRG00000003393) #18	RASA1 (ENSBGRG00000003000) #19	ENSBGRG00000002911	ENSBGRG00000002891 #21	ENSBGRG00000002876	EDIL3 (ENSBGRG00000002823) #22	HAPLN1 (ENSBGRG00000002793) #23	ENSBGRG00000002717 #24	XRCC4 (ENSBGRG00000002672) #25	ENSBGRG00000002643 #26	ENSBGRG00000002629 #27	RPS23 (ENSBGRG00000002552) ##28	ENSBGRG00000002531	ATG10 (ENSBGRG00000002509) #29	ENSBGRG00000002331	ACOT12 (ENSBGRG00000002226)	ZCCHC9 (ENSBGRG00000002188)	CKMT2 (ENSBGRG00000002164)	RASGRF2 (ENSBGRG00000002055)	MSH3 (ENSBGRG00000001953)	ENSBGRG00000001927
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00390000013276.o.b	ENSGT00940000157492.b #13	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.t.c.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.i	ENSGT00390000012355.A.a
Cow	MODERN SPECIES	26	POLR3G (ENSBTAG00000044077)	MBLAC2 (ENSBTAG00000013612) #11	ENSBTAG00000049440	CETN3 (ENSBTAG00000014373) #12	ENSBTAG00000050847	ENSBTAG00000003258	MEF2C (ENSBTAG00000020701) #13	ENSBTAG00000050008	TMEM161B (ENSBTAG00000008484) #16	ENSBTAG00000022762	CCNH (ENSBTAG00000009566) #18	ENSBTAG00000039523	RASA1 (ENSBTAG00000009565) #19	ENSBTAG00000037434	ENSBTAG00000039555 #21	EDIL3 (ENSBTAG00000044033) #22	HAPLN1 (ENSBTAG00000012411) #23	VCAN (ENSBTAG00000014906) #24	XRCC4 (ENSBTAG00000024275) #25	TMEM167A (ENSBTAG00000039591) #26	ATP6AP1L (ENSBTAG00000050733) #27	RPS23 (ENSBTAG00000013358) ##28	ATG10 (ENSBTAG00000038117) #29	SSBP2 (ENSBTAG00000013856)	ACOT12 (ENSBTAG00000011110)	ZCCHC9 (ENSBTAG00000005265)	CKMT2 (ENSBTAG00000001003)	RASGRF2 (ENSBTAG00000030259)	MSH3 (ENSBTAG00000007684)	DHFR (ENSBTAG00000007681)	ANKRD34B (ENSBTAG00000007633)
Hybrid Bos Indicus	MODERN SPECIES	26	LYSMD3 (ENSBIXG00005031273) #9	ENSBIXG00005031282	MBLAC2 (ENSBIXG00005031285) #11	CETN3 (ENSBIXG00005001585) #12	ENSBIXG00005001676	MEF2C (ENSBIXG00005005207) #13	TMEM161B (ENSBIXG00005028965) #16	ENSBIXG00005005066	CCNH (ENSBIXG00005028904) #18	RASA1 (ENSBIXG00005028839) #19	ENSBIXG00005006645	ENSBIXG00005002359	ENSBIXG00005002395 #21	ENSBIXG00005004944	ENSBIXG00005004939	EDIL3 (ENSBIXG00005028476) #22	HAPLN1 (ENSBIXG00005028378) #23	VCAN (ENSBIXG00005028318) #24	XRCC4 (ENSBIXG00005006967) #25	ENSBIXG00005028035 #26	ENSBIXG00005007595 #27	RPS23 (ENSBIXG00005027957) ##28	ATG10 (ENSBIXG00005027902) #29	SSBP2 (ENSBIXG00005027806)	ACOT12 (ENSBIXG00005027646)	ZCCHC9 (ENSBIXG00005027597)	CKMT2 (ENSBIXG00005027530)	RASGRF2 (ENSBIXG00005027490)	MSH3 (ENSBIXG00005027416)	ENSBIXG00005027356	ANKRD34B (ENSBIXG00005004705)
American bison	MODERN SPECIES	3347															ENSBBBG00000003562	EDIL3 (ENSBBBG00000014711) #22	HAPLN1 (ENSBBBG00000014722) #23	VCAN (ENSBBBG00000014864) #24	XRCC4 (ENSBBBG00000008154) #25	ENSBBBG00000014913 #26	ENSBBBG00000001222 #27	RPS23 (ENSBBBG00000001192) ##28	ATG10 (ENSBBBG00000001167) #29	SSBP2 (ENSBBBG00000000825)	ACOT12 (ENSBBBG00000003637)	ZCCHC9 (ENSBBBG00000003607)	CKMT2 (ENSBBBG00000000814)	RASGRF2 (ENSBBBG00000014983)	MSH3 (ENSBBBG00000002773)	ENSBBBG00000003536	ANKRD34B (ENSBBBG00000015166)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253.a	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.h.a.b.a.a.a.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed.g ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.i	ENSGT00390000012355.A.a	ENSGT00530000063681.b.a
Goat	MODERN SPECIES	26	ARRDC3 (ENSCHIG00000026437)	ADGRV1 (ENSCHIG00000025783) #7	LYSMD3 (ENSCHIG00000003504) #9	ENSCHIG00000018071	MBLAC2 (ENSCHIG00000023453) #11	CETN3 (ENSCHIG00000016019) #12	ENSCHIG00000020592	MEF2C (ENSCHIG00000016206) #13	TMEM161B (ENSCHIG00000026629) #16	ENSCHIG00000009148	ENSCHIG00000011671	CCNH (ENSCHIG00000023767) #18	RASA1 (ENSCHIG00000014118) #19	ENSCHIG00000026992 #21	ENSCHIG00000018614	EDIL3 (ENSCHIG00000020190) #22	HAPLN1 (ENSCHIG00000023635) #23	VCAN (ENSCHIG00000026117) #24	XRCC4 (ENSCHIG00000015879) #25	ENSCHIG00000010267	ENSCHIG00000012625 #26	ENSCHIG00000026375 #27	RPS23 (ENSCHIG00000014944) ##28	ATG10 (ENSCHIG00000023237) #29	ENSCHIG00000013647	ENSCHIG00000020381	ACOT12 (ENSCHIG00000018595)	ZCCHC9 (ENSCHIG00000024514)	CKMT2 (ENSCHIG00000018578)	RASGRF2 (ENSCHIG00000027194)	MSH3 (ENSCHIG00000026585)
Rambouillet Sheep	MODERN SPECIES	21	ARRDC3 (ENSOARG00020023796)	ENSOARG00020023738 #7	ENSOARG00020023494 #7	LYSMD3 (ENSOARG00020023468) #9	POLR3G (ENSOARG00020023448)	MBLAC2 (ENSOARG00020023430) #11	CETN3 (ENSOARG00020023394) #12	MEF2C (ENSOARG00020023218) #13	ENSOARG00020023187	ENSOARG00020023175	TMEM161B (ENSOARG00020022987) #16	CCNH (ENSOARG00020022925) #18	RASA1 (ENSOARG00020021922) #19	ENSOARG00020021822 #21	ENSOARG00020021797	EDIL3 (ENSOARG00020021700) #22	HAPLN1 (ENSOARG00020021646) #23	VCAN (ENSOARG00020021234) #24	XRCC4 (ENSOARG00020021156) #25	ENSOARG00020021132	TMEM167A (ENSOARG00020021065) #26	RPS23 (ENSOARG00020020958) ##28	ENSOARG00020020926	ATG10 (ENSOARG00020020709) #29	SSBP2 (ENSOARG00020017360)	ACOT12 (ENSOARG00020017094)	ENSOARG00020017025	CKMT2 (ENSOARG00020016978)	RASGRF2 (ENSOARG00020016662)	MSH3 (ENSOARG00020016326)	DHFR (ENSOARG00020016220)
Siberian musk deer	MODERN SPECIES	64									MEF2C (ENSMMSG00000010714) #13	ENSMMSG00000010663	TMEM161B (ENSMMSG00000010530) #16	CCNH (ENSMMSG00000010425) #18	RASA1 (ENSMMSG00000009941) #19	ENSMMSG00000009859 #21	ENSMMSG00000009810	EDIL3 (ENSMMSG00000009709) #22	HAPLN1 (ENSMMSG00000009670) #23	VCAN (ENSMMSG00000009492) #24	XRCC4 (ENSMMSG00000009442) #25	TMEM167A (ENSMMSG00000009408) #26	ENSMMSG00000009376 #27	RPS23 (ENSMMSG00000009338) ##28	ATG10 (ENSMMSG00000009261) #29	ENSMMSG00000009140	ACOT12 (ENSMMSG00000008994)	ZCCHC9 (ENSMMSG00000008961)	CKMT2 (ENSMMSG00000008923)	RASGRF2 (ENSMMSG00000008773)	MSH3 (ENSMMSG00000008280)	ENSMMSG00000008196	ANKRD34B (ENSMMSG00000008176)
Yarkand deer	MODERN SPECIES	32	FAM172A (ENSCHYG00000004013)	ARRDC3 (ENSCHYG00000003906)	ADGRV1 (ENSCHYG00000003763) #7	LYSMD3 (ENSCHYG00000003721) #9	ENSCHYG00000003644	MBLAC2 (ENSCHYG00000003631) #11	CETN3 (ENSCHYG00000003610) #12	ENSCHYG00000003593	ENSCHYG00000003578	MEF2C (ENSCHYG00000003492) #13	ENSCHYG00000003464	TMEM161B (ENSCHYG00000003346) #16	CCNH (ENSCHYG00000003238) #18	RASA1 (ENSCHYG00000003079) #19	ENSCHYG00000003033 #21	EDIL3 (ENSCHYG00000002937) #22	HAPLN1 (ENSCHYG00000002889) #23	VCAN (ENSCHYG00000002720) #24	XRCC4 (ENSCHYG00000002672) #25	ENSCHYG00000002651 #26	ENSCHYG00000002635	ENSCHYG00000002627 #27	RPS23 (ENSCHYG00000002604) ##28	ATG10 (ENSCHYG00000002572) #29	ENSCHYG00000002550	ENSCHYG00000002539	SSBP2 (ENSCHYG00000002111)	ACOT12 (ENSCHYG00000001923)	ZCCHC9 (ENSCHYG00000001898)	CKMT2 (ENSCHYG00000001872)	RASGRF2 (ENSCHYG00000001777)
Camelidae	ANCESTRAL SPECIES	1	ENSGT00940000165983	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a.ed ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Arabian camel	MODERN SPECIES	22	FAM172A (ENSCDRG00005013822)	POU5F2 (ENSCDRG00005013944)	NR2F1 (ENSCDRG00005014004)	ENSCDRG00005014036	ARRDC3 (ENSCDRG00005014088)	ADGRV1 (ENSCDRG00005014220) #7	LYSMD3 (ENSCDRG00005014481) #9	ENSCDRG00005014536	MBLAC2 (ENSCDRG00005014578) #11	CETN3 (ENSCDRG00005014609) #12	MEF2C (ENSCDRG00005014686) #13	TMEM161B (ENSCDRG00005015359) #16	CCNH (ENSCDRG00005015934) #18	RASA1 (ENSCDRG00005016008) #19	ENSCDRG00005016325 #21	EDIL3 (ENSCDRG00005016390) #22	ENSCDRG00005016462	HAPLN1 (ENSCDRG00005016491) #23	VCAN (ENSCDRG00005016571) #24	XRCC4 (ENSCDRG00005016772) #25	TMEM167A (ENSCDRG00005016802) #26	ENSCDRG00005016847 #27	RPS23 (ENSCDRG00005016870) #28	ATG10 (ENSCDRG00005016936) #29	SSBP2 (ENSCDRG00005017010)	ACOT12 (ENSCDRG00005017206)	ZCCHC9 (ENSCDRG00005017268)	CKMT2 (ENSCDRG00005017343)	RASGRF2 (ENSCDRG00005017402)	MSH3 (ENSCDRG00005017666)	ENSCDRG00005018379
Alpaca	MODERN SPECIES	2100																EDIL3 (ENSVPAG00000001371) #22	HAPLN1 (ENSVPAG00000001370) #23	VCAN (ENSVPAG00000001368) #24	XRCC4 (ENSVPAG00000001366) #25	TMEM167A (ENSVPAG00000001365) #26
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT01030000234916	ENSGT00550000074784.a.b ##28	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00940000153064.b.d	ENSGT00950000183016.E.b.b.b	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k #21	ENSGT00990000209137	ENSGT00390000018086.z.j.b #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.b #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Caniformia	ANCESTRAL SPECIES	5	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.a #16	ENSGT00390000000672.a.b.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.j.b.a.a #21	ENSGT00390000018086.z.j.b.a.b #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.a #16	ENSGT00390000000672.a.b.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.j.b.a.b #21	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.a #26	ENSGT00940000155186.q.b #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Ursidae	ANCESTRAL SPECIES	16	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.rb #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.a #16	ENSGT00390000000672.a.b.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.j.b.a.b #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Ursus	ANCESTRAL SPECIES	298																ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.a #26
Polar bear	MODERN SPECIES	289																EDIL3 (ENSUMAG00000000738) #22	HAPLN1 (ENSUMAG00000000692) #23	VCAN (ENSUMAG00000000664) #24	XRCC4 (ENSUMAG00000000649) #25	TMEM167A (ENSUMAG00000000641) #26
American black bear	MODERN SPECIES	4017																EDIL3 (ENSUAMG00000021162) #22
Giant Panda	MODERN SPECIES	13	FAM172A (ENSAMEG00000006805)	NR2F1 (ENSAMEG00000003437)	ARRDC3 (ENSAMEG00000010468)	ENSAMEG00000027330	ADGRV1 (ENSAMEG00000013179) #7	ENSAMEG00000028431	LYSMD3 (ENSAMEG00000013235) #9	MBLAC2 (ENSAMEG00000026891) #11	ENSAMEG00000013240	CETN3 (ENSAMEG00000013258) #12	MEF2C (ENSAMEG00000013271) #13	TMEM161B (ENSAMEG00000013309) #16	CCNH (ENSAMEG00000013328) #18	RASA1 (ENSAMEG00000013362) #19	COX7C (ENSAMEG00000013441) #21	EDIL3 (ENSAMEG00000004721) #22	HAPLN1 (ENSAMEG00000007517) #23	VCAN (ENSAMEG00000007464) #24	XRCC4 (ENSAMEG00000007459) #25	TMEM167A (ENSAMEG00000023466) #26	ENSAMEG00000027104 #27	RPS23 (ENSAMEG00000015966) ##28	ENSAMEG00000028746	ATG10 (ENSAMEG00000015949) #29	SSBP2 (ENSAMEG00000015913)	ACOT12 (ENSAMEG00000015867)	CKMT2 (ENSAMEG00000015838)	ENSAMEG00000028748	RASGRF2 (ENSAMEG00000015782)	MSH3 (ENSAMEG00000015754)	ENSAMEG00000015750
Mustelinae	ANCESTRAL SPECIES	38	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000165378	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01100000264971	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT01010000224334	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.b #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00940000170977
American mink	MODERN SPECIES	303														ENSNVIG00000023054	ENSNVIG00000023057	EDIL3 (ENSNVIG00000023059) #22	ENSNVIG00000023066	HAPLN1 (ENSNVIG00000023067) #23	VCAN (ENSNVIG00000023075) #24	XRCC4 (ENSNVIG00000023103) #25	TMEM167A (ENSNVIG00000023109) #26	ENSNVIG00000023119 #27
Ferret	MODERN SPECIES	231			ARRDC3 (ENSMPUG00000007709)	ADGRV1 (ENSMPUG00000007722) #7	LYSMD3 (ENSMPUG00000007898) #9	ENSMPUG00000007905	MBLAC2 (ENSMPUG00000007938) #11	CETN3 (ENSMPUG00000007940) #12	ENSMPUG00000019825	MEF2C (ENSMPUG00000007964) #13	ENSMPUG00000019826	TMEM161B (ENSMPUG00000007974) #16	CCNH (ENSMPUG00000007985) #18	RASA1 (ENSMPUG00000007995) #19	ENSMPUG00000008011	EDIL3 (ENSMPUG00000008054) #22	ENSMPUG00000008068	HAPLN1 (ENSMPUG00000008073) #23	VCAN (ENSMPUG00000008080) #24	XRCC4 (ENSMPUG00000008093) #25	ENSMPUG00000008101 #27	RPS23 (ENSMPUG00000008114) ##28	ATG10 (ENSMPUG00000008122) #29	ENSMPUG00000008145	ACOT12 (ENSMPUG00000008154)	ZCCHC9 (ENSMPUG00000008276)	CKMT2 (ENSMPUG00000008281)	RASGRF2 (ENSMPUG00000008451)	ENSMPUG00000008654	MSH3 (ENSMPUG00000008661)	ENSMPUG00000008702
Canidae	ANCESTRAL SPECIES	52	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129.a	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.a #16	ENSGT00390000000672.a.b.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.j.b.a.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129.a	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b.a #16	ENSGT00390000000672.a.b.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.j.b.a.a #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.a #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00950000182901.a.a.b.b.a.b.a.b.b.b	ENSGT00940000155679	ENSGT00550000074949
Dingo	MODERN SPECIES	138	MBLAC2 (ENSCAFG00020005995) #11	CETN3 (ENSCAFG00020005994) #12	MEF2C (ENSCAFG00020005345) #13	ENSCAFG00020005193 #16	ENSCAFG00020005076 #16	ENSCAFG00020005035	ENSCAFG00020005033	CCNH (ENSCAFG00020004794) #18	RASA1 (ENSCAFG00020003475) #19	ENSCAFG00020003332 #21	ENSCAFG00020003329	ENSCAFG00020003311	ENSCAFG00020003308	ENSCAFG00020003294	ENSCAFG00020003272	EDIL3 (ENSCAFG00020003249) #22	HAPLN1 (ENSCAFG00020003233) #23	ENSCAFG00020003203 #24	ENSCAFG00020003191	XRCC4 (ENSCAFG00020003038) #25	ENSCAFG00020003023	ENSCAFG00020003017 #27	ENSCAFG00020003016	ENSCAFG00020002993 #28	ATG10 (ENSCAFG00020002977) #29	SSBP2 (ENSCAFG00020002937)	ACOT12 (ENSCAFG00020002922)	ZCCHC9 (ENSCAFG00020002911)	CKMT2 (ENSCAFG00020002898)	ENSCAFG00020002891	RASGRF2 (ENSCAFG00020001341)
Dog	MODERN SPECIES	22	FAM172A (ENSCAFG00845015282)	NR2F1 (ENSCAFG00845015564)	ARRDC3 (ENSCAFG00845015988)	ADGRV1 (ENSCAFG00845016226) #7	LYSMD3 (ENSCAFG00845016559) #9	POLR3G (ENSCAFG00845016615)	MBLAC2 (ENSCAFG00845016669) #11	CETN3 (ENSCAFG00845016793) #12	MEF2C (ENSCAFG00845017289) #13	TMEM161B (ENSCAFG00845018131) #16	CCNH (ENSCAFG00845018630) #18	RASA1 (ENSCAFG00845018838) #19	ENSCAFG00845019491 #21	ENSCAFG00845019654	ENSCAFG00845019702	EDIL3 (ENSCAFG00845019823) #22	HAPLN1 (ENSCAFG00845019962) #23	VCAN (ENSCAFG00845020098) #24	XRCC4 (ENSCAFG00845020506) #25	TMEM167A (ENSCAFG00845020637) #26	ENSCAFG00845020741 #27	RPS23 (ENSCAFG00845020943) #28	ENSCAFG00845021041	ENSCAFG00845021100 #29	SSBP2 (ENSCAFG00845021264)	ACOT12 (ENSCAFG00845021525)	ZCCHC9 (ENSCAFG00845021627)	CKMT2 (ENSCAFG00845021668)	RASGRF2 (ENSCAFG00845021795)	ENSCAFG00845022211	MSH3 (ENSCAFG00845022317)
Red fox	MODERN SPECIES	11	NR2F1 (ENSVVUG00000022129)	ENSVVUG00000022154	ENSVVUG00000022156	ARRDC3 (ENSVVUG00000022162)	ADGRV1 (ENSVVUG00000022179) #7	LYSMD3 (ENSVVUG00000022480) #9	POLR3G (ENSVVUG00000022482)	MBLAC2 (ENSVVUG00000022485) #11	CETN3 (ENSVVUG00000022496) #12	MEF2C (ENSVVUG00000022531) #13	TMEM161B (ENSVVUG00000022547) #16	CCNH (ENSVVUG00000022568) #18	RASA1 (ENSVVUG00000022666) #19	ENSVVUG00000023203	ENSVVUG00000023210 #21	EDIL3 (ENSVVUG00000023242) #22	HAPLN1 (ENSVVUG00000023246) #23	VCAN (ENSVVUG00000023253) #24	XRCC4 (ENSVVUG00000023262) #25	ENSVVUG00000023272 #26	ENSVVUG00000023284 #27	RPS23 (ENSVVUG00000023287) ##28	ENSVVUG00000023289	ATG10 (ENSVVUG00000023291) #29	SSBP2 (ENSVVUG00000023314)	ACOT12 (ENSVVUG00000023325)	ZCCHC9 (ENSVVUG00000023331)	SEPT11 (ENSVVUG00000023346)	ENSVVUG00000023386	SHROOM3 (ENSVVUG00000023389)	CCDC158 (ENSVVUG00000023403)
Felidae	ANCESTRAL SPECIES	6	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00940000153064.b.d.f.b.a	ENSGT00950000183016.E.b.b.b.o	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k.f #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.b #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000164293	ENSGT00940000157876	ENSGT00910000147795	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k.f #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.b #26	ENSGT01000000215143	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00950000184259
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00940000164415	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k.f #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.q.b #26	ENSGT01000000215143	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01100000263873	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00950000184259
lion	MODERN SPECIES		ENSPLOG00000011209	ARRDC3 (ENSPLOG00000011242)	ADGRV1 (ENSPLOG00000011381) #7	LYSMD3 (ENSPLOG00000012246) #9	ENSPLOG00000012266	MBLAC2 (ENSPLOG00000012299) #11	ENSPLOG00000012328	CETN3 (ENSPLOG00000012412) #12	MEF2C (ENSPLOG00000012545) #13	ENSPLOG00000012737	TMEM161B (ENSPLOG00000012789) #16	CCNH (ENSPLOG00000012933) #18	RASA1 (ENSPLOG00000013077) #19	COX7C (ENSPLOG00000013360) #21	ENSPLOG00000013409	EDIL3 (ENSPLOG00000013439) #22	HAPLN1 (ENSPLOG00000013633) #23	VCAN (ENSPLOG00000013768) #24	ENSPLOG00000013906	XRCC4 (ENSPLOG00000013925) #25	ENSPLOG00000013980 #26	ENSPLOG00000014059 #27	ENSPLOG00000014144 ##28	ATG10 (ENSPLOG00000014220) #29	SSBP2 (ENSPLOG00000000026)	ACOT12 (ENSPLOG00000000044)	ZCCHC9 (ENSPLOG00000000050)	CKMT2 (ENSPLOG00000000058)	RASGRF2 (ENSPLOG00000000068)	MSH3 (ENSPLOG00000000131)	ENSPLOG00000000207
leopard	MODERN SPECIES	40			ARRDC3 (ENSPPRG00000024372)	ADGRV1 (ENSPPRG00000019300) #7	LYSMD3 (ENSPPRG00000006547) #9	ENSPPRG00000006320	MBLAC2 (ENSPPRG00000006169) #11	CETN3 (ENSPPRG00000005808) #12	MEF2C (ENSPPRG00000004433) #13	ENSPPRG00000025023	TMEM161B (ENSPPRG00000025054) #16	CCNH (ENSPPRG00000019964) #18	RASA1 (ENSPPRG00000018762) #19	COX7C (ENSPPRG00000013235) #21	ENSPPRG00000013140	EDIL3 (ENSPPRG00000012668) #22	HAPLN1 (ENSPPRG00000011520) #23	ENSPPRG00000010678 #24	XRCC4 (ENSPPRG00000008800) #25	ENSPPRG00000008129 #26	ENSPPRG00000007337	ENSPPRG00000007261 #27	RPS23 (ENSPPRG00000006877) ##28	ENSPPRG00000005949	ATG10 (ENSPPRG00000005547) #29	SSBP2 (ENSPPRG00000004684)	ACOT12 (ENSPPRG00000022908)	ZCCHC9 (ENSPPRG00000023474)	CKMT2 (ENSPPRG00000023587)	RASGRF2 (ENSPPRG00000024375)	ENSPPRG00000019187
Tiger	MODERN SPECIES	134				ARRDC3 (ENSPTIG00000017076)	ENSPTIG00000017493 #7	ENSPTIG00000020703 #7	LYSMD3 (ENSPTIG00000018455) #9	ENSPTIG00000018989	MBLAC2 (ENSPTIG00000019976) #11	CETN3 (ENSPTIG00000020886) #12	MEF2C (ENSPTIG00000021723) #13	TMEM161B (ENSPTIG00000016989) #16	CCNH (ENSPTIG00000019590) #18	RASA1 (ENSPTIG00000001406) #19	COX7C (ENSPTIG00000012097) #21	EDIL3 (ENSPTIG00000013147) #22	HAPLN1 (ENSPTIG00000015518) #23	ENSPTIG00000015827 #24	XRCC4 (ENSPTIG00000018886) #25	TMEM167A (ENSPTIG00000020380) #26	ENSPTIG00000020576	ENSPTIG00000020744 #27	RPS23 (ENSPTIG00000021170) ##28	ENSPTIG00000006771	ATG10 (ENSPTIG00000007429) #29	SSBP2 (ENSPTIG00000010302)	ACOT12 (ENSPTIG00000016875)	ZCCHC9 (ENSPTIG00000017303)	CKMT2 (ENSPTIG00000018190)	RASGRF2 (ENSPTIG00000021051)	ENSPTIG00000021977
Cat	MODERN SPECIES		ADGRV1 (ENSFCAG00000012405) #7	LYSMD3 (ENSFCAG00000029406) #9	ENSFCAG00000032444	MBLAC2 (ENSFCAG00000029005) #11	ENSFCAG00000024204	CETN3 (ENSFCAG00000022808) #12	MEF2C (ENSFCAG00000011595) #13	TMEM161B (ENSFCAG00000031564) #16	ENSFCAG00000050982	ENSFCAG00000048547	CCNH (ENSFCAG00000004828) #18	RASA1 (ENSFCAG00000004825) #19	COX7C (ENSFCAG00000034705) #21	ENSFCAG00000022528	ENSFCAG00000050071	EDIL3 (ENSFCAG00000002497) #22	HAPLN1 (ENSFCAG00000037432) #23	VCAN (ENSFCAG00000023191) #24	XRCC4 (ENSFCAG00000029944) #25	ENSFCAG00000045423 #26	ENSFCAG00000046011 #27	RPS23 (ENSFCAG00000008839) ##28	ENSFCAG00000022315	ATG10 (ENSFCAG00000036397) #29	SSBP2 (ENSFCAG00000011841)	ACOT12 (ENSFCAG00000009827)	ZCCHC9 (ENSFCAG00000033419)	CKMT2 (ENSFCAG00000004820)	RASGRF2 (ENSFCAG00000022975)	MSH3 (ENSFCAG00000005686)	ENSFCAG00000026745
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.p #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.p #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k #21	ENSGT00990000209137	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.p #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Greater horseshoe bat	MODERN SPECIES	25	FAM172A (ENSRFEG00010021303)	NR2F1 (ENSRFEG00010021267)	ARRDC3 (ENSRFEG00010021249)	ENSRFEG00010021237	ADGRV1 (ENSRFEG00010021104) #7	LYSMD3 (ENSRFEG00010021070) #9	ENSRFEG00010021057	MBLAC2 (ENSRFEG00010021048) #11	CETN3 (ENSRFEG00010021029) #12	MEF2C (ENSRFEG00010020935) #13	TMEM161B (ENSRFEG00010020897) #16	CCNH (ENSRFEG00010020861) #18	RASA1 (ENSRFEG00010020705) #19	ENSRFEG00010020642 #21	ENSRFEG00010020631	EDIL3 (ENSRFEG00010020588) #22	HAPLN1 (ENSRFEG00010020554) #23	VCAN (ENSRFEG00010020306) #24	XRCC4 (ENSRFEG00010020264) #25	ENSRFEG00010020237 #26	ENSRFEG00010020195 #27	RPS23 (ENSRFEG00010020074) ##28	ATG10 (ENSRFEG00010020034) #29	ENSRFEG00010019999	SSBP2 (ENSRFEG00010019877)	ZCCHC9 (ENSRFEG00010019818)	ACOT12 (ENSRFEG00010019759)	CKMT2 (ENSRFEG00010019715)	RASGRF2 (ENSRFEG00010019626)	ENSRFEG00010019598	MSH3 (ENSRFEG00010019541)
Microbat	MODERN SPECIES	937	ENSMLUG00000025001	ADGRV1 (ENSMLUG00000000281) #7	LYSMD3 (ENSMLUG00000030107) #9	ENSMLUG00000014954	MBLAC2 (ENSMLUG00000014952) #11	CETN3 (ENSMLUG00000029475) #12	MEF2C (ENSMLUG00000008230) #13	TMEM161B (ENSMLUG00000008633) #16	CCNH (ENSMLUG00000011533) #18	RASA1 (ENSMLUG00000011486) #19	ENSMLUG00000025365	ENSMLUG00000030456	COX7C (ENSMLUG00000026041) #21	ENSMLUG00000024030	ENSMLUG00000023755	EDIL3 (ENSMLUG00000011587) #22	HAPLN1 (ENSMLUG00000001603) #23	VCAN (ENSMLUG00000013757) #24	XRCC4 (ENSMLUG00000013754) #25	TMEM167A (ENSMLUG00000008924) #26	ENSMLUG00000013943 #27	ENSMLUG00000013939 #28	ATG10 (ENSMLUG00000013935) #29	SSBP2 (ENSMLUG00000001897)	ACOT12 (ENSMLUG00000001890)	ZCCHC9 (ENSMLUG00000001886)	CKMT2 (ENSMLUG00000001884)	RASGRF2 (ENSMLUG00000001877)	MSH3 (ENSMLUG00000001865)	ENSMLUG00000012200	ANKRD34B (ENSMLUG00000002857)
Megabat	MODERN SPECIES	1149																EDIL3 (ENSPVAG00000002658) #22	HAPLN1 (ENSPVAG00000002655) #23
Equus	ANCESTRAL SPECIES	6	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260253	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086.z.k #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186.p #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.b ##28	ENSGT01100000266343	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Donkey	MODERN SPECIES	29	ARHGEF37 (ENSEASG00005002843)	CSNK1A1 (ENSEASG00005002855)	IL17B (ENSEASG00005034663)	PCYOX1L (ENSEASG00005002869)	GRPEL2 (ENSEASG00005029186)	AFAP1L1 (ENSEASG00005002876)	ABLIM3 (ENSEASG00005002886)	SH3TC2 (ENSEASG00005002925)	ADRB2 (ENSEASG00005035523)	HTR4 (ENSEASG00005002941)	FBXO38 (ENSEASG00005002952)	SPINK9 (ENSEASG00005026461)	SPINK7 (ENSEASG00005031369)	ENSEASG00005027718	ENSEASG00005024880	ENSEASG00005004576 #22	HAPLN1 (ENSEASG00005004559) #23	VCAN (ENSEASG00005004200) #24	XRCC4 (ENSEASG00005004152) #25	TMEM167A (ENSEASG00005035583) #26	ENSEASG00005004142 #27	RPS23 (ENSEASG00005004140) #28	ENSEASG00005004133	ATG10 (ENSEASG00005004128) #29	ENSEASG00005032025	SSBP2 (ENSEASG00005004112)	ENSEASG00005032079	ZCCHC9 (ENSEASG00005004088)	CKMT2 (ENSEASG00005004085)	RASGRF2 (ENSEASG00005002852)	MSH3 (ENSEASG00005002611)
Horse	MODERN SPECIES	5	KIAA0825 (ENSECAG00000018095)	FAM172A (ENSECAG00000018274)	NR2F1 (ENSECAG00000018508)	ARRDC3 (ENSECAG00000019506)	ADGRV1 (ENSECAG00000021057) #7	LYSMD3 (ENSECAG00000024495) #9	POLR3G (ENSECAG00000024548)	MBLAC2 (ENSECAG00000024647) #11	CETN3 (ENSECAG00000024704) #12	MEF2C (ENSECAG00000024716) #13	ENSECAG00000049214	TMEM161B (ENSECAG00000025094) #16	RASA1 (ENSECAG00000005203) #19	CCNH (ENSECAG00000001853) #18	ENSECAG00000030211 #21	EDIL3 (ENSECAG00000015388) #22	HAPLN1 (ENSECAG00000016477) #23	VCAN (ENSECAG00000019596) #24	XRCC4 (ENSECAG00000020269) #25	TMEM167A (ENSECAG00000026834) #26	ATP6AP1L (ENSECAG00000020318) #27	RPS23 (ENSECAG00000031968) ##28	ENSECAG00000035044	ATG10 (ENSECAG00000026970) #29	SSBP2 (ENSECAG00000020782)	ACOT12 (ENSECAG00000021196)	ZCCHC9 (ENSECAG00000023186)	CKMT2 (ENSECAG00000024226)	RASGRF2 (ENSECAG00000000903)	MSH3 (ENSECAG00000009962)	ENSECAG00000026827
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Afrotheria	ANCESTRAL SPECIES	12											ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a	ENSGT00530000063681.b.a
Tenrec	MODERN SPECIES	5604																EDIL3 (ENSETEG00000013089) #22
Afrotheria_a	ANCESTRAL SPECIES	12											ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a	ENSGT00530000063681.b.a
Elephant	MODERN SPECIES	526											MEF2C (ENSLAFG00000013761) #13	TMEM161B (ENSLAFG00000011097) #16	CCNH (ENSLAFG00000028032) #18	RASA1 (ENSLAFG00000011060) #19	COX7C (ENSLAFG00000017502) #21	EDIL3 (ENSLAFG00000017730) #22	HAPLN1 (ENSLAFG00000010769) #23	VCAN (ENSLAFG00000002716) #24	ENSLAFG00000011855	TMEM167A (ENSLAFG00000009206) #26	ENSLAFG00000013186 #27	RPS23 (ENSLAFG00000031506) #28	ATG10 (ENSLAFG00000013183) #29	SSBP2 (ENSLAFG00000012776)	ACOT12 (ENSLAFG00000012765)	ZCCHC9 (ENSLAFG00000012763)	CKMT2 (ENSLAFG00000011587)	ENSLAFG00000028067	RASGRF2 (ENSLAFG00000011576)	ENSLAFG00000029236	ENSLAFG00000015797
Hyrax	MODERN SPECIES	4731																EDIL3 (ENSPCAG00000002787) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000158144 #22
Sloth	MODERN SPECIES	5127																EDIL3 (ENSCHOG00000001449) #22
Armadillo	MODERN SPECIES	3617																EDIL3 (ENSDNOG00000001497) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00390000001347.t	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.a
Opossum	MODERN SPECIES	2	ADGRV1 (ENSMODG00000020196) #7	ENSMODG00000020220 #9	ENSMODG00000020218	ENSMODG00000020221 #11	CETN3 (ENSMODG00000020222) #12	ENSMODG00000042795	MEF2C (ENSMODG00000020223) #13	ENSMODG00000020225	TMEM161B (ENSMODG00000020226) #16	CCNH (ENSMODG00000020228) #18	RASA1 (ENSMODG00000020235) #19	COX7C (ENSMODG00000037063) #21	ENSMODG00000024868	ENSMODG00000041038	ENSMODG00000045346	EDIL3 (ENSMODG00000020246) #22	HAPLN1 (ENSMODG00000038203) #23	ENSMODG00000020252 #24	XRCC4 (ENSMODG00000020253) #25	ENSMODG00000040896 #26	ENSMODG00000037212 #27	RPS23 (ENSMODG00000020255) ##28	ENSMODG00000024865 #29	ENSMODG00000044614	SSBP2 (ENSMODG00000020258)	ACOT12 (ENSMODG00000020260)	ZCCHC9 (ENSMODG00000020261)	CKMT2 (ENSMODG00000020259)	RASGRF2 (ENSMODG00000020263)	MSH3 (ENSMODG00000020264)	ENSMODG00000024860
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00390000001347.t	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.a	ENSGT00390000012355.A.a
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.kb #7	ENSGT00940000154880.jb #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00390000001347.t	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.a	ENSGT00390000012355.A.a
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.kb #7	ENSGT00940000154880.jb #7	ENSGT00940000158711 #9	ENSGT01090000260129	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00390000001347.t	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283.a	ENSGT00390000012355.A.a
Common wonbat	MODERN SPECIES	1013	ARRDC3 (ENSVURG00010017623)	ENSVURG00010017634 #7	ENSVURG00010017653 #7	LYSMD3 (ENSVURG00010017677) #9	ENSVURG00010017685	MBLAC2 (ENSVURG00010017691) #11	CETN3 (ENSVURG00010017696) #12	MEF2C (ENSVURG00010017717) #13	TMEM161B (ENSVURG00010017759) #16	CCNH (ENSVURG00010017770) #18	RASA1 (ENSVURG00010017779) #19	ENSVURG00010017797 #21	ENSVURG00010017806	ENSVURG00010017815	ENSVURG00010017826	EDIL3 (ENSVURG00010017835) #22	HAPLN1 (ENSVURG00010017842) #23	ENSVURG00010017848 #24	XRCC4 (ENSVURG00010017856) #25	ENSVURG00010017862 #26	ENSVURG00010017874 ##28	ATG10 (ENSVURG00010017892) #29	ENSVURG00010017901	SSBP2 (ENSVURG00010017922)	ACOT12 (ENSVURG00010017946)	ZCCHC9 (ENSVURG00010017952)	CKMT2 (ENSVURG00010017961)	RASGRF2 (ENSVURG00010018013)	ENSVURG00010018314	ENSVURG00010018365	ANKRD34B (ENSVURG00010018370)
koala	MODERN SPECIES	5	ARRDC3 (ENSPCIG00000025721)	ENSPCIG00000000909 #7	ENSPCIG00000010004 #7	LYSMD3 (ENSPCIG00000004346) #9	ENSPCIG00000004353	MBLAC2 (ENSPCIG00000004357) #11	CETN3 (ENSPCIG00000004360) #12	MEF2C (ENSPCIG00000029504) #13	TMEM161B (ENSPCIG00000029514) #16	CCNH (ENSPCIG00000029526) #18	RASA1 (ENSPCIG00000029535) #19	ENSPCIG00000002439 #21	ENSPCIG00000003752	ENSPCIG00000002455	ENSPCIG00000036658	EDIL3 (ENSPCIG00000006442) #22	HAPLN1 (ENSPCIG00000007780) #23	ENSPCIG00000029893 #24	XRCC4 (ENSPCIG00000029896) #25	ENSPCIG00000032700 #26	ENSPCIG00000029898	ENSPCIG00000029899	ENSPCIG00000029901 #27	ENSPCIG00000029902 ##28	RPS23 (ENSPCIG00000029904) ##28	ENSPCIG00000029909	ATG10 (ENSPCIG00000029907) #29	SSBP2 (ENSPCIG00000013205)	ACOT12 (ENSPCIG00000013207)	ZCCHC9 (ENSPCIG00000013208)	CKMT2 (ENSPCIG00000013210)
Wallaby	MODERN SPECIES	6973																ENSMEUG00000007893 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000001791	ENSSHAG00000002123	ENSSHAG00000028977 #7	LYSMD3 (ENSSHAG00000030429) #9	ENSSHAG00000006647	ENSSHAG00000024161 #11	CETN3 (ENSSHAG00000026337) #12	ENSSHAG00000023543	MEF2C (ENSSHAG00000010347) #13	TMEM161B (ENSSHAG00000032244) #16	ENSSHAG00000030553	CCNH (ENSSHAG00000016764) #18	RASA1 (ENSSHAG00000016807) #19	COX7C (ENSSHAG00000026810) #21	ENSSHAG00000006286	EDIL3 (ENSSHAG00000005209) #22	HAPLN1 (ENSSHAG00000022951) #23	ENSSHAG00000007330 #24	XRCC4 (ENSSHAG00000009690) #25	TMEM167A (ENSSHAG00000029456) #26	ENSSHAG00000007765 #27	ENSSHAG00000030156	ENSSHAG00000008347 #28	ENSSHAG00000028481 ##28	ENSSHAG00000008505 #29	SSBP2 (ENSSHAG00000013397)	ACOT12 (ENSSHAG00000014213)	ZCCHC9 (ENSSHAG00000014504)	CKMT2 (ENSSHAG00000014606)	RASGRF2 (ENSSHAG00000014847)	MSH3 (ENSSHAG00000016015)
Platypus	MODERN SPECIES		FAM172A (ENSOANG00000011068)	NR2F1 (ENSOANG00000046139)	ARRDC3 (ENSOANG00000011069)	ENSOANG00000043317 #7	ENSOANG00000011071 #7	LYSMD3 (ENSOANG00000011072) #9	ENSOANG00000046173	MBLAC2 (ENSOANG00000047148) #11	ENSOANG00000011075 #12	MEF2C (ENSOANG00000011076) #13	TMEM161B (ENSOANG00000011078) #16	CCNH (ENSOANG00000014752) #18	RASA1 (ENSOANG00000014753) #19	COX7C (ENSOANG00000014755) #21	ENSOANG00000048884	EDIL3 (ENSOANG00000014759) #22	HAPLN1 (ENSOANG00000014760) #23	ENSOANG00000014761 #24	ENSOANG00000014765 #25	TMEM167A (ENSOANG00000014766) #26	ENSOANG00000031637 #27	ATG10 (ENSOANG00000020641) #29	SSBP2 (ENSOANG00000014767)	ACOT12 (ENSOANG00000014768)	ZCCHC9 (ENSOANG00000014769)	CKMT2 (ENSOANG00000014771)	RASGRF2 (ENSOANG00000001603)	MSH3 (ENSOANG00000001605)	ENSOANG00000001607	ANKRD34B (ENSOANG00000001609)	FAM151B (ENSOANG00000001610)
Sauria	ANCESTRAL SPECIES	5	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A	ENSGT00390000000672.a.b #16	ENSGT00940000154136	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000241481	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT01040000240833	ENSGT00550000074784.a.b ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000154136	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000241481	ENSGT00550000074784.a.a ##28	ENSGT01040000240833	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000241481	ENSGT00550000074784.a.a ##28	ENSGT01040000240833	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Laterata	ANCESTRAL SPECIES	8	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a	ENSGT00530000063681.b.a
Argentine black and white tegu	MODERN SPECIES	10	FAM172A (ENSSMRG00000007712)	NR2F1 (ENSSMRG00000007704)	CETN3 (ENSSMRG00000007661) #12	ARRDC3 (ENSSMRG00000007657)	ADGRV1 (ENSSMRG00000007551) #7	LYSMD3 (ENSSMRG00000007513) #9	ENSSMRG00000007509	MBLAC2 (ENSSMRG00000007505) #11	ENSSMRG00000007503	MEF2C (ENSSMRG00000007471) #13	TMEM161B (ENSSMRG00000007438) #16	ENSSMRG00000007433	CCNH (ENSSMRG00000007424) #18	RASA1 (ENSSMRG00000007402) #19	COX7C (ENSSMRG00000007352) #21	EDIL3 (ENSSMRG00000007329) #22	ENSSMRG00000007280	HAPLN1 (ENSSMRG00000007276) #23	VCAN (ENSSMRG00000006719) #24	XRCC4 (ENSSMRG00000006677) #25	TMEM167A (ENSSMRG00000006663) #26	ENSSMRG00000006636 #27	ENSSMRG00000006627	ENSSMRG00000006633	RPS23 (ENSSMRG00000006623) ##28	ATG10 (ENSSMRG00000006616) #29	ENSSMRG00000006600	SSBP2 (ENSSMRG00000006585)	ENSSMRG00000006560	ZCCHC9 (ENSSMRG00000006556)	CKMT2 (ENSSMRG00000006550)
Common wall lizard	MODERN SPECIES	2	FAM172A (ENSPMRG00000012980)	NR2F1 (ENSPMRG00000012967)	ARRDC3 (ENSPMRG00000012951)	ADGRV1 (ENSPMRG00000012759) #7	LYSMD3 (ENSPMRG00000012703) #9	ENSPMRG00000012701	MBLAC2 (ENSPMRG00000012699) #11	CETN3 (ENSPMRG00000012695) #12	ENSPMRG00000012694	MEF2C (ENSPMRG00000012686) #13	ENSPMRG00000012673	TMEM161B (ENSPMRG00000012659) #16	CCNH (ENSPMRG00000012638) #18	RASA1 (ENSPMRG00000012629) #19	COX7C (ENSPMRG00000012625) #21	EDIL3 (ENSPMRG00000012616) #22	HAPLN1 (ENSPMRG00000012609) #23	ENSPMRG00000012606	ENSPMRG00000012576 #24	ENSPMRG00000012564 #24	XRCC4 (ENSPMRG00000012553) #25	TMEM167A (ENSPMRG00000012546) #26	ENSPMRG00000012542 #27	ENSPMRG00000012537	ENSPMRG00000012535 #28	RPS23 (ENSPMRG00000012532) ##28	ENSPMRG00000012529	ENSPMRG00000012528	ATG10 (ENSPMRG00000012525) #29	SSBP2 (ENSPMRG00000012480)	ACOT12 (ENSPMRG00000012439)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT01030000235102	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000240833	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000156031	ENSGT00940000158953.g	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT01030000235102	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b.b #28	ENSGT00550000074784.b.a.a #28	ENSGT01040000240833	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT00940000156031	ENSGT00940000158953.g	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT01030000235102	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b.b #28	ENSGT00550000074784.b.a.a #28	ENSGT01040000240833.e	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000156031	ENSGT00940000158953.g	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT01030000235102	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b.b #28	ENSGT00550000074784.b.a.a #28	ENSGT01040000240833.e	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Mainland tiger snake	MODERN SPECIES	1	KIAA0825 (ENSNSUG00000006158)	FAM172A (ENSNSUG00000006156)	NR2F1 (ENSNSUG00000006155)	ARRDC3 (ENSNSUG00000006123)	ENSNSUG00000006121 #7	ENSNSUG00000006114 #7	LYSMD3 (ENSNSUG00000006111) #9	MBLAC2 (ENSNSUG00000006110) #11	CETN3 (ENSNSUG00000006108) #12	MEF2C (ENSNSUG00000005871) #13	TMEM161B (ENSNSUG00000005819) #16	CCNH (ENSNSUG00000005790) #18	RASA1 (ENSNSUG00000004867) #19	ENSNSUG00000004862	ENSNSUG00000004860	EDIL3 (ENSNSUG00000004852) #22	HAPLN1 (ENSNSUG00000004848) #23	ENSNSUG00000004844 #24	XRCC4 (ENSNSUG00000004725) #25	TMEM167A (ENSNSUG00000004709) #26	ENSNSUG00000004706 #27	ENSNSUG00000004701 #28	ENSNSUG00000004696	ATG10 (ENSNSUG00000004695) #29	SSBP2 (ENSNSUG00000004681)	ENSNSUG00000004679	ZCCHC9 (ENSNSUG00000004677)	CKMT2 (ENSNSUG00000004674)	RASGRF2 (ENSNSUG00000004672)	MSH3 (ENSNSUG00000004670)	ENSNSUG00000004669
Eastern brown snake	MODERN SPECIES	2	KIAA0825 (ENSPTXG00000005117)	FAM172A (ENSPTXG00000005114)	NR2F1 (ENSPTXG00000005112)	ENSPTXG00000005110	ARRDC3 (ENSPTXG00000005107)	ENSPTXG00000005106 #7	ENSPTXG00000005103 #7	LYSMD3 (ENSPTXG00000005102) #9	MBLAC2 (ENSPTXG00000005101) #11	CETN3 (ENSPTXG00000005100) #12	MEF2C (ENSPTXG00000005099) #13	TMEM161B (ENSPTXG00000005097) #16	CCNH (ENSPTXG00000005096) #18	RASA1 (ENSPTXG00000005095) #19	ENSPTXG00000005093	EDIL3 (ENSPTXG00000004710) #22	HAPLN1 (ENSPTXG00000004709) #23	ENSPTXG00000004708 #24	XRCC4 (ENSPTXG00000004688) #25	TMEM167A (ENSPTXG00000004687) #26	ENSPTXG00000004686	ENSPTXG00000004685 #27	ENSPTXG00000004684	ENSPTXG00000004683 #28	ENSPTXG00000004682 #28	ENSPTXG00000004681	ATG10 (ENSPTXG00000004680) #29	SSBP2 (ENSPTXG00000004679)	ACOT12 (ENSPTXG00000004678)	ZCCHC9 (ENSPTXG00000004677)	CKMT2 (ENSPTXG00000004676)
Indian cobra	MODERN SPECIES	1	MSH3 (ENSNNAG00000002548)	RASGRF2 (ENSNNAG00000002418)	CKMT2 (ENSNNAG00000002396)	ZCCHC9 (ENSNNAG00000002384)	SSBP2 (ENSNNAG00000002360)	ATG10 (ENSNNAG00000002344) #29	ENSNNAG00000002336 #28	ENSNNAG00000002327 #28	ENSNNAG00000002308	ENSNNAG00000002292 #27	ENSNNAG00000002286	TMEM167A (ENSNNAG00000002280) #26	XRCC4 (ENSNNAG00000002227) #25	ENSNNAG00000002196 #24	HAPLN1 (ENSNNAG00000002181) #23	EDIL3 (ENSNNAG00000002046) #22	ENSNNAG00000002013	RASA1 (ENSNNAG00000001568) #19	CCNH (ENSNNAG00000001430) #18	ENSNNAG00000001415 #16	ENSNNAG00000001402 #16	MEF2C (ENSNNAG00000001372) #13	CETN3 (ENSNNAG00000001354) #12	MBLAC2 (ENSNNAG00000001338) #11	LYSMD3 (ENSNNAG00000001322) #9	ADGRV1 (ENSNNAG00000001181) #7	ARRDC3 (ENSNNAG00000001125)	NR2F1 (ENSNNAG00000001101)	FAM172A (ENSNNAG00000001060)	KIAA0825 (ENSNNAG00000000974)	ENSNNAG00000000954
Lizard	MODERN SPECIES	1	NR2F1 (ENSACAG00000013324)	ARRDC3 (ENSACAG00000013384)	ADGRV1 (ENSACAG00000013431) #7	LYSMD3 (ENSACAG00000035122) #9	MBLAC2 (ENSACAG00000013646) #11	ENSACAG00000038915	ENSACAG00000041753	MEF2C (ENSACAG00000000488) #13	TMEM161B (ENSACAG00000000583) #16	ENSACAG00000044209	CCNH (ENSACAG00000000627) #18	RASA1 (ENSACAG00000000769) #19	COX7C (ENSACAG00000001016) #21	ENSACAG00000009101	ENSACAG00000038280	EDIL3 (ENSACAG00000011454) #22	HAPLN1 (ENSACAG00000011432) #23	ENSACAG00000037910	VCAN (ENSACAG00000011195) #24	ENSACAG00000037657	XRCC4 (ENSACAG00000011160) #25	TMEM167A (ENSACAG00000011153) #26	ENSACAG00000037915 #27	ENSACAG00000011136	RPS23 (ENSACAG00000044983) ##28	ENSACAG00000035602	ATG10 (ENSACAG00000038343) #29	ENSACAG00000045454	SSBP2 (ENSACAG00000029227)	ACOT12 (ENSACAG00000010998)	ZCCHC9 (ENSACAG00000010965)
tuatara	MODERN SPECIES	1902																EDIL3 (ENSSPUG00000018658) #22
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000241481	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT01040000240833	ENSGT00550000074784.a.b ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00550000074784.a.a ##28	ENSGT01040000240833	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000240833	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Emydidae	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c.a.b	ENSGT00530000063907.c.a.a	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880.gb #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000240833	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
painted turtle	MODERN SPECIES	695	ENSCPBG00000010563 #7	ENSCPBG00000010580	ENSCPBG00000010585 #7	RHOA (ENSCPBG00000010596)	LYSMD3 (ENSCPBG00000010597) #9	ENSCPBG00000010601	MBLAC2 (ENSCPBG00000010603) #11	CETN3 (ENSCPBG00000010605) #12	MEF2C (ENSCPBG00000010619) #13	TMEM161B (ENSCPBG00000010638) #16	CCNH (ENSCPBG00000010650) #18	RASA1 (ENSCPBG00000010658) #19	ENSCPBG00000010666	COX7C (ENSCPBG00000010669) #21	ENSCPBG00000010674	EDIL3 (ENSCPBG00000010684) #22	HAPLN1 (ENSCPBG00000010699) #23	VCAN (ENSCPBG00000010709) #24	XRCC4 (ENSCPBG00000010726) #25	TMEM167A (ENSCPBG00000010731) #26	ENSCPBG00000010740 #27	ENSCPBG00000010746 #28	ENSCPBG00000010748	RPS23 (ENSCPBG00000010751) ##28	ENSCPBG00000010753	ATG10 (ENSCPBG00000010761) #29	SSBP2 (ENSCPBG00000010799)	ACOT12 (ENSCPBG00000010812)	ZCCHC9 (ENSCPBG00000010819)	CKMT2 (ENSCPBG00000010825)	RASGRF2 (ENSCPBG00000010831)
Three-toed box turtle	MODERN SPECIES	29	KIAA0825 (ENSTMTG00000013360)	FAM172A (ENSTMTG00000013334)	NR2F1 (ENSTMTG00000013324)	ARRDC3 (ENSTMTG00000013310)	ENSTMTG00000013290 #7	ENSTMTG00000013154 #7	LYSMD3 (ENSTMTG00000013133) #9	ENSTMTG00000013128	MBLAC2 (ENSTMTG00000013121) #11	CETN3 (ENSTMTG00000013112) #12	MEF2C (ENSTMTG00000013068) #13	ENSTMTG00000013044 #16	CCNH (ENSTMTG00000013023) #18	RASA1 (ENSTMTG00000012988) #19	COX7C (ENSTMTG00000012967) #21	EDIL3 (ENSTMTG00000012653) #22	HAPLN1 (ENSTMTG00000012604) #23	ENSTMTG00000012578 #24	ENSTMTG00000012555 #24	XRCC4 (ENSTMTG00000012541) #25	TMEM167A (ENSTMTG00000012521) #26	ENSTMTG00000012494	ENSTMTG00000012480 #27	ENSTMTG00000012462 ##28	ATG10 (ENSTMTG00000012339) #29	SSBP2 (ENSTMTG00000012293)	ENSTMTG00000012276	ZCCHC9 (ENSTMTG00000012264)	CKMT2 (ENSTMTG00000012229)	RASGRF2 (ENSTMTG00000012030)	MSH3 (ENSTMTG00000011972)
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT01040000240833.a	ENSGT00550000074784.a.a ##28	ENSGT01040000240833.b	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Abingdon island giant tortoise	MODERN SPECIES	328																EDIL3 (ENSCABG00000019077) #22	SARM1 (ENSCABG00000019078)	VTN (ENSCABG00000019080)	ENSCABG00000019081	SEBOX (ENSCABG00000019082)	ENSCABG00000019085	POLDIP2 (ENSCABG00000019093)
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005006220	FAM172A (ENSGEVG00005006265)	NR2F1 (ENSGEVG00005006372)	ARRDC3 (ENSGEVG00005006404)	ENSGEVG00005006434	ADGRV1 (ENSGEVG00005006505) #7	LYSMD3 (ENSGEVG00005006783) #9	ENSGEVG00005006802	MBLAC2 (ENSGEVG00005006820) #11	CETN3 (ENSGEVG00005006845) #12	MEF2C (ENSGEVG00005006877) #13	TMEM161B (ENSGEVG00005006912) #16	CCNH (ENSGEVG00005006937) #18	RASA1 (ENSGEVG00005007316) #19	COX7C (ENSGEVG00005009127) #21	EDIL3 (ENSGEVG00005009290) #22	HAPLN1 (ENSGEVG00005010002) #23	ENSGEVG00005010195 #24	ENSGEVG00005010286 #24	XRCC4 (ENSGEVG00005010349) #25	TMEM167A (ENSGEVG00005010408) #26	ENSGEVG00005010430 #27	ENSGEVG00005010461	RPS23 (ENSGEVG00005010591) ##28	ENSGEVG00005010649 #28	ENSGEVG00005010746	ATG10 (ENSGEVG00005010800) #29	SSBP2 (ENSGEVG00005010855)	ACOT12 (ENSGEVG00005010989)	ZCCHC9 (ENSGEVG00005011427)	CKMT2 (ENSGEVG00005011478)
Chinese turtle	MODERN SPECIES	1168																EDIL3 (ENSPSIG00000016123) #22	HAPLN1 (ENSPSIG00000016121) #23	VCAN (ENSPSIG00000016053) #24	XRCC4 (ENSPSIG00000016043) #25	TMEM167A (ENSPSIG00000016032) #26	ENSPSIG00000016026 #27	ENSPSIG00000016011 #28	RPS23 (ENSPSIG00000016006) ##28	ATG10 (ENSPSIG00000015998) #29	SSBP2 (ENSPSIG00000015983)	ACOT12 (ENSPSIG00000015897)	ZCCHC9 (ENSPSIG00000015854)	CKMT2 (ENSPSIG00000015748)	RASGRF2 (ENSPSIG00000015555)	ENSPSIG00000015542	MSH3 (ENSPSIG00000015278)
Archosauria	ANCESTRAL SPECIES	1	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846 #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT01040000241481	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Aves	ANCESTRAL SPECIES	4	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Neognathae	ANCESTRAL SPECIES	19	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c.b	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c.b	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT01080000257332.A.b.a.a	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c.b	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT01070000254325.a.b.a	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102.k.a #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c.b	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT01070000254325.a.b.a	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102.k.a #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT01030000234916	ENSGT00550000074784.b #28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Chicken	MODERN SPECIES	131	ENSGALG00010006074	ENSGALG00010006600	ENSGALG00010006034	ENSGALG00010005451	ENSGALG00010005976	ENSGALG00010006265	ENSGALG00010005947	ENSGALG00010006364	ENSGALG00010005908	ENSGALG00010006044	CCNH (ENSGALG00010005887) #18	ENSGALG00010005899 #19	COX7C (ENSGALG00010006252) #21	ENSGALG00010006257	ENSGALG00010005481	EDIL3 (ENSGALG00010006096) #22	HAPLN1 (ENSGALG00010006730) #23	VCAN (ENSGALG00010006739) #24	XRCC4 (ENSGALG00010006821) #25	TMEM167A (ENSGALG00010006851) #26	ENSGALG00010006923	ATP6AP1L (ENSGALG00010006121) #27	RPS23 (ENSGALG00010006178) #28	ATG10 (ENSGALG00010006223) #29	SSBP2 (ENSGALG00010006575)	ACOT12 (ENSGALG00010006588)	ZCCHC9 (ENSGALG00010007097)	CKMT2 (ENSGALG00010007143)	RASGRF2 (ENSGALG00010007166)	MSH3 (ENSGALG00010007217)	DHFR (ENSGALG00010007224)
Turkey	MODERN SPECIES	1299	KIAA0825 (ENSMGAG00000008159)	FAM172A (ENSMGAG00000018212)	ENSMGAG00000021056 #7	ENSMGAG00000004687	ENSMGAG00000022052 #7	LYSMD3 (ENSMGAG00000008206) #9	ENSMGAG00000008203	MBLAC2 (ENSMGAG00000020818) #11	CETN3 (ENSMGAG00000016928) #12	MEF2C (ENSMGAG00000021783) #13	TMEM161B (ENSMGAG00000008210) #16	CCNH (ENSMGAG00000008253) #18	RASA1 (ENSMGAG00000008292) #19	COX7C (ENSMGAG00000019652) #21	ENSMGAG00000008654	EDIL3 (ENSMGAG00000022807) #22	HAPLN1 (ENSMGAG00000020012) #23	ENSMGAG00000020049 #24	ENSMGAG00000020009 #24	ENSMGAG00000017132 #24	XRCC4 (ENSMGAG00000018677) #25	ENSMGAG00000003952 #27	RPS23 (ENSMGAG00000016932) ##28	ENSMGAG00000020585	SSBP2 (ENSMGAG00000020044)	ACOT12 (ENSMGAG00000021238)	ZCCHC9 (ENSMGAG00000006841)	CKMT2 (ENSMGAG00000007813)	RASGRF2 (ENSMGAG00000008333)	MSH3 (ENSMGAG00000008310)	ENSMGAG00000002698
Japanese quail	MODERN SPECIES	699	FAM172A (ENSCJPG00005000113)	NR2F1 (ENSCJPG00005000146)	ARRDC3 (ENSCJPG00005000230)	ADGRV1 (ENSCJPG00005000279) #7	LYSMD3 (ENSCJPG00005000389) #9	ENSCJPG00005000390	CETN3 (ENSCJPG00005000396) #12	MEF2C (ENSCJPG00005000422) #13	TMEM161B (ENSCJPG00005000442) #16	CCNH (ENSCJPG00005000482) #18	RASA1 (ENSCJPG00005000488) #19	COX7C (ENSCJPG00005000502) #21	ENSCJPG00005000513	ENSCJPG00005000521 #27	RPS23 (ENSCJPG00005000525) ##28	EDIL3 (ENSCJPG00005000531) #22	HAPLN1 (ENSCJPG00005000544) #23	VCAN (ENSCJPG00005000555) #24	XRCC4 (ENSCJPG00005000577) #25	TMEM167A (ENSCJPG00005000681) #26	ATG10 (ENSCJPG00005000682) #29	SSBP2 (ENSCJPG00005000692)	ACOT12 (ENSCJPG00005000706)	ZCCHC9 (ENSCJPG00005000711)	CKMT2 (ENSCJPG00005000716)	RASGRF2 (ENSCJPG00005000719)	MSH3 (ENSCJPG00005000723)	ENSCJPG00005000728	ANKRD34B (ENSCJPG00005000731)	FAM151B (ENSCJPG00005000734)	ENSCJPG00005000738
Anatidae	ANCESTRAL SPECIES	91																ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b	ENSGT00530000063681.b.a
Pink-footed goose	MODERN SPECIES	141															ENSABRG00000009024	EDIL3 (ENSABRG00000008986) #22	ENSABRG00000008976	HAPLN1 (ENSABRG00000008967) #23	VCAN (ENSABRG00000008943) #24	XRCC4 (ENSABRG00000008920) #25	TMEM167A (ENSABRG00000008918) #26	ENSABRG00000008899 #27	RPS23 (ENSABRG00000008885) ##28	ATG10 (ENSABRG00000008857) #29	SSBP2 (ENSABRG00000008433)	ACOT12 (ENSABRG00000008346)	ENSABRG00000008304	RAD17 (ENSABRG00000008290)	AK6 (ENSABRG00000008278)	CCDC125 (ENSABRG00000008267)	ENSABRG00000008241
Duck	MODERN SPECIES	4281	GNG10 (ENSAPLG00000027672)	DNAJC25 (ENSAPLG00000006443)	ECPAS (ENSAPLG00000006453)	SMC2 (ENSAPLG00000007236)	ENSAPLG00000008339	PTGR1 (ENSAPLG00000008342)	TXN (ENSAPLG00000008771)	SVEP1 (ENSAPLG00000008787)	MUSK (ENSAPLG00000009215)	LPAR1 (ENSAPLG00000010035)	ENSAPLG00000010110	TMEM215 (ENSAPLG00000028116)	ELAVL2 (ENSAPLG00000010429)	ENSAPLG00000022392	ENSAPLG00000030914	EDIL3 (ENSAPLG00000016364) #22	HAPLN1 (ENSAPLG00000016285) #23	VCAN (ENSAPLG00000016034) #24	XRCC4 (ENSAPLG00000016008) #25	TMEM167A (ENSAPLG00000015984) #26	ENSAPLG00000005367 #27	RPS23 (ENSAPLG00000023076) ##28	ATG10 (ENSAPLG00000005440) #29	SSBP2 (ENSAPLG00000005451)	ACOT12 (ENSAPLG00000005659)	ZCCHC9 (ENSAPLG00000005968)	RAD17 (ENSAPLG00000006015)	AK6 (ENSAPLG00000024406)	CCDC125 (ENSAPLG00000006296)	ENSAPLG00000006547	FAM151B (ENSAPLG00000026983)
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c.b	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Passeriformes	ANCESTRAL SPECIES	44															ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Great tit	MODERN SPECIES	642	ENSPMJG00000001288	MSH3 (ENSPMJG00000000269)	RASGRF2 (ENSPMJG00000000142)	CKMT2 (ENSPMJG00000014299)	ZCCHC9 (ENSPMJG00000014297)	ACOT12 (ENSPMJG00000014296)	SSBP2 (ENSPMJG00000014294)	ATG10 (ENSPMJG00000014291) #29	ENSPMJG00000014290	ENSPMJG00000014289 ##28	ENSPMJG00000014288 #27	TMEM167A (ENSPMJG00000014283) #26	XRCC4 (ENSPMJG00000014280) #25	VCAN (ENSPMJG00000014262) #24	HAPLN1 (ENSPMJG00000014261) #23	EDIL3 (ENSPMJG00000014240) #22	COX7C (ENSPMJG00000014193) #21	MEGF10 (ENSPMJG00000014184)	PRRC1 (ENSPMJG00000014182)	C1QL1 (ENSPMJG00000014176)	SLC12A2 (ENSPMJG00000014165)	FBN2 (ENSPMJG00000012768)	FN3KRP (ENSPMJG00000012767)	ENSPMJG00000012766	MARCHF3 (ENSPMJG00000012765)	ENSPMJG00000012764	PHAX (ENSPMJG00000012763)	KLF4 (ENSPMJG00000012759)	RAD23B (ENSPMJG00000012758)	ZNF462 (ENSPMJG00000012754)	ENSPMJG00000012753
Passeriformes_d	ANCESTRAL SPECIES	40															ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Passeriformes_g	ANCESTRAL SPECIES	48															ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Medium ground finch	MODERN SPECIES	134																EDIL3 (ENSGFOG00000003723) #22	HAPLN1 (ENSGFOG00000003764) #23	VCAN (ENSGFOG00000003782) #24	XRCC4 (ENSGFOG00000003823) #25	TMEM167A (ENSGFOG00000003850) #26	ENSGFOG00000003856 #27	RPS23 (ENSGFOG00000003868) #28	ENSGFOG00000003887	ATG10 (ENSGFOG00000003901) #29	SSBP2 (ENSGFOG00000003918)	ACOT12 (ENSGFOG00000003959)	ZCCHC9 (ENSGFOG00000004014)	ENSGFOG00000004036	RASGRF2 (ENSGFOG00000004158)	MSH3 (ENSGFOG00000004209)	ENSGFOG00000004376
Passeroidea	ANCESTRAL SPECIES	47															ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.a.a ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283	ENSGT00390000012355.A.a
Zebra finch	MODERN SPECIES	104	ZNF462 (ENSTGUG00000006352)	RAD23B (ENSTGUG00000006372)	KLF4 (ENSTGUG00000006403)	ENSTGUG00000026787	PHAX (ENSTGUG00000006427)	LMNB1 (ENSTGUG00000006435)	MARCHF3 (ENSTGUG00000006489)	ENSTGUG00000006493	MEGF10 (ENSTGUG00000006496)	PRRC1 (ENSTGUG00000006537)	SLC12A2 (ENSTGUG00000006546)	FBN2 (ENSTGUG00000006641)	ENSTGUG00000027830	ENSTGUG00000020662	COX7C (ENSTGUG00000006814) #21	EDIL3 (ENSTGUG00000006826) #22	HAPLN1 (ENSTGUG00000006865) #23	VCAN (ENSTGUG00000006883) #24	XRCC4 (ENSTGUG00000006911) #25	TMEM167A (ENSTGUG00000019292) #26	ENSTGUG00000021524	ENSTGUG00000006935 #27	RPS23 (ENSTGUG00000017554) ##28	ENSTGUG00000006821	ATG10 (ENSTGUG00000006943) #29	SSBP2 (ENSTGUG00000006949)	ACOT12 (ENSTGUG00000006971)	ZCCHC9 (ENSTGUG00000006994)	CKMT2 (ENSTGUG00000007005)	RASGRF2 (ENSTGUG00000007037)	MSH3 (ENSTGUG00000007066)
Common canary	MODERN SPECIES	56	AK6 (ENSSCAG00000009418)	CCDC125 (ENSSCAG00000009413)	ENSSCAG00000009404	FAM151B (ENSSCAG00000009398)	ENSSCAG00000009394	ENSSCAG00000009393	MSH3 (ENSSCAG00000009385)	RASGRF2 (ENSSCAG00000008895)	ENSSCAG00000008780	ZCCHC9 (ENSSCAG00000008749)	ACOT12 (ENSSCAG00000008727)	SSBP2 (ENSSCAG00000008712)	ATG10 (ENSSCAG00000008706) #29	RPS23 (ENSSCAG00000008698) ##28	ENSSCAG00000008690 #27	EDIL3 (ENSSCAG00000008613) #22	HAPLN1 (ENSSCAG00000008587) #23	VCAN (ENSSCAG00000008575) #24	XRCC4 (ENSSCAG00000008554) #25	TMEM167A (ENSSCAG00000008549) #26
Flycatcher	MODERN SPECIES	561	ENSFALG00000000833	ENSFALG00000000816	CETN3 (ENSFALG00000009026) #12	LYSMD3 (ENSFALG00000026089) #9	ADGRV1 (ENSFALG00000009043) #7	ARRDC3 (ENSFALG00000009068)	NR2F1 (ENSFALG00000025548)	FAM172A (ENSFALG00000009072)	KIAA0825 (ENSFALG00000009074)	SLF1 (ENSFALG00000009078)	MCTP1 (ENSFALG00000009081)	SKIC3 (ENSFALG00000009093)	ARSK (ENSFALG00000009095)	ENSFALG00000009108	ENSFALG00000027608	EDIL3 (ENSFALG00000023958) #22	HAPLN1 (ENSFALG00000012880) #23	VCAN (ENSFALG00000012891) #24	XRCC4 (ENSFALG00000012903) #25	TMEM167A (ENSFALG00000025743) #26	ENSFALG00000012660 #27	RPS23 (ENSFALG00000012668) ##28	ATG10 (ENSFALG00000012675) #29	SSBP2 (ENSFALG00000012689)	ENSFALG00000012745	ACOT12 (ENSFALG00000012700)	ZCCHC9 (ENSFALG00000012709)	RASGRF2 (ENSFALG00000012784)	MSH3 (ENSFALG00000012814)	ENSFALG00000012822	ANKRD34B (ENSFALG00000012833)
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b	ENSGT00940000157876	ENSGT00940000155411.c.b	ENSGT00940000154880 #7	ENSGT00940000158711 #9	ENSGT01030000235264	ENSGT00390000017819 #11	ENSGT00940000157995 #12	ENSGT00940000157492.b #13	ENSGT00390000000672.a.b #16	ENSGT00390000008634 #18	ENSGT00940000155846.q #19	ENSGT00390000018086 #21	ENSGT00940000158144 #22	ENSGT00940000159267 #23	ENSGT00940000156102 #24	ENSGT00390000017079 #25	ENSGT00940000155186 #26	ENSGT00940000158156 #27	ENSGT00550000074784.b #28	ENSGT00550000074784.a.b ##28	ENSGT00390000000924 #29	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f	ENSGT00940000155679	ENSGT00550000074949	ENSGT00390000010283
Kakapo	MODERN SPECIES	19	SLF1 (ENSSHBG00005003296)	KIAA0825 (ENSSHBG00005003330)	FAM172A (ENSSHBG00005003361)	NR2F1 (ENSSHBG00005003375)	ENSSHBG00005003420	ADGRV1 (ENSSHBG00005003448) #7	LYSMD3 (ENSSHBG00005003517) #9	ENSSHBG00005003528	MBLAC2 (ENSSHBG00005003534) #11	CETN3 (ENSSHBG00005003545) #12	MEF2C (ENSSHBG00005003556) #13	TMEM161B (ENSSHBG00005003651) #16	CCNH (ENSSHBG00005003674) #18	ENSSHBG00005003804 #19	COX7C (ENSSHBG00005004373) #21	EDIL3 (ENSSHBG00005001414) #22	ENSSHBG00005001456	HAPLN1 (ENSSHBG00005001483) #23	VCAN (ENSSHBG00005001512) #24	XRCC4 (ENSSHBG00005001575) #25	ENSSHBG00005001705	ENSSHBG00005001734 #27	RPS23 (ENSSHBG00005001774) #28	ENSSHBG00005001802	ATG10 (ENSSHBG00005001819) #29	SSBP2 (ENSSHBG00005001883)	ENSSHBG00005001901	ACOT12 (ENSSHBG00005001923)	ZCCHC9 (ENSSHBG00005001941)	ENSSHBG00005001986	RASGRF2 (ENSSHBG00005002079)
Golden eagle	MODERN SPECIES	91	ENSACCG00020012920	FAM172A (ENSACCG00020013051)	NR2F1 (ENSACCG00020013131)	ARRDC3 (ENSACCG00020013149)	ENSACCG00020013174 #7	ENSACCG00020013302 #7	LYSMD3 (ENSACCG00020013378) #9	ENSACCG00020013396	MBLAC2 (ENSACCG00020013405) #11	CETN3 (ENSACCG00020013416) #12	MEF2C (ENSACCG00020013466) #13	TMEM161B (ENSACCG00020013554) #16	CCNH (ENSACCG00020013615) #18	RASA1 (ENSACCG00020013845) #19	COX7C (ENSACCG00020013971) #21	EDIL3 (ENSACCG00020013998) #22	HAPLN1 (ENSACCG00020014033) #23	VCAN (ENSACCG00020014055) #24	XRCC4 (ENSACCG00020014071) #25	TMEM167A (ENSACCG00020014094) #26	ENSACCG00020014107 #27	ENSACCG00020014125	ENSACCG00020014140 ##28	ATG10 (ENSACCG00020014163) #29	SSBP2 (ENSACCG00020014198)	ACOT12 (ENSACCG00020014240)	ZCCHC9 (ENSACCG00020014264)	CKMT2 (ENSACCG00020014280)	RASGRF2 (ENSACCG00020014507)	MSH3 (ENSACCG00020014684)	ENSACCG00020014707
African ostrich	MODERN SPECIES	651																EDIL3 (ENSSCUG00000009760) #22	HAPLN1 (ENSSCUG00000009758) #23
Australian saltwater crocodile	MODERN SPECIES	29	KIAA0825 (ENSCPRG00005002937)	FAM172A (ENSCPRG00005002912)	NR2F1 (ENSCPRG00005002896)	ARRDC3 (ENSCPRG00005002885)	ADGRV1 (ENSCPRG00005002739) #7	LYSMD3 (ENSCPRG00005002691) #9	ENSCPRG00005002687	MBLAC2 (ENSCPRG00005002685) #11	CETN3 (ENSCPRG00005002682) #12	MEF2C (ENSCPRG00005002661) #13	TMEM161B (ENSCPRG00005002646) #16	CCNH (ENSCPRG00005002621) #18	RASA1 (ENSCPRG00005002296) #19	COX7C (ENSCPRG00005002239) #21	ENSCPRG00005002231	EDIL3 (ENSCPRG00005002211) #22	HAPLN1 (ENSCPRG00005002178) #23	VCAN (ENSCPRG00005002150) #24	XRCC4 (ENSCPRG00005002138) #25	TMEM167A (ENSCPRG00005002127) #26	ENSCPRG00005002117 #27	ENSCPRG00005002110 #28	ENSCPRG00005002107	RPS23 (ENSCPRG00005002101) ##28	ENSCPRG00005002095	ATG10 (ENSCPRG00005002089) #29	ENSCPRG00005002080	ENSCPRG00005002064	SSBP2 (ENSCPRG00005001899)	ACOT12 (ENSCPRG00005001874)	ZCCHC9 (ENSCPRG00005001871)