Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT01030000234916	ENSGT00550000074784.a.b ##29	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34
Glires	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT01030000234916	ENSGT00550000074784.a.b ##29	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34
Rodentia	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT01030000234916	ENSGT00550000074784.a.b ##29	ENSGT00960000186730	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00960000186730	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37
Kangaroo rat	MODERN SPECIES	347				ENSDORG00000028809 #10	Arrdc3 (ENSDORG00000027054) #11	Adgrv1 (ENSDORG00000006226) #12	Lysmd3 (ENSDORG00000002417) #13	ENSDORG00000002414 #14	Mblac2 (ENSDORG00000002413) #15	Cetn3 (ENSDORG00000007233) #16	Mef2c (ENSDORG00000026015) #17	Tmem161b (ENSDORG00000012482) #18	Ccnh (ENSDORG00000001438) #19	Rasa1 (ENSDORG00000001435) #20	ENSDORG00000004968 #21	Edil3 (ENSDORG00000000456) #22	ENSDORG00000026224 #23	Hapln1 (ENSDORG00000015896) #24	ENSDORG00000023517 #25	Xrcc4 (ENSDORG00000015883) #26	Tmem167 (ENSDORG00000026989) #27	Atp6ap1l (ENSDORG00000025510) #28	Rps23 (ENSDORG00000001813) #29	Atg10 (ENSDORG00000009893) #30	ENSDORG00000024485 #31	Ssbp2 (ENSDORG00000001305) #32	Acot12 (ENSDORG00000001303) #33	Zcchc9 (ENSDORG00000001300) #34	Ckmt2 (ENSDORG00000015691) #35	Rasgrf2 (ENSDORG00000001359) #36	Msh3 (ENSDORG00000005509) #37
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00960000186730	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37
Muroidea	ANCESTRAL SPECIES	4	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00960000186730	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00960000186730.a	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102.c.a #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01070000254013	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102.c.a #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Prairie vole	MODERN SPECIES	6	ENSMOCG00000020099	ENSMOCG00000015077	Arrdc3 (ENSMOCG00000006099) #11	ENSMOCG00000018170 #12	ENSMOCG00000013307 #12	Lysmd3 (ENSMOCG00000020333) #13	Polr3g (ENSMOCG00000014935)	Mblac2 (ENSMOCG00000011064) #15	Cetn3 (ENSMOCG00000009624) #16	Mef2c (ENSMOCG00000010324) #17	Tmem161b (ENSMOCG00000017125) #18	Ccnh (ENSMOCG00000005334) #19	Rasa1 (ENSMOCG00000020205) #20	Cox7c (ENSMOCG00000017709)	ENSMOCG00000016800	Edil3 (ENSMOCG00000001973) #22	Hapln1 (ENSMOCG00000018799) #24	ENSMOCG00000000187 #25	Xrcc4 (ENSMOCG00000015137) #26	Tmem167 (ENSMOCG00000013381) #27	ENSMOCG00000010468	ENSMOCG00000002610	Atp6ap1l (ENSMOCG00000020532) #28	ENSMOCG00000017478 #29	Atg10 (ENSMOCG00000014675) #30	ENSMOCG00000011514	Ssbp2 (ENSMOCG00000022756) #32	Acot12 (ENSMOCG00000015615) #33	Zcchc9 (ENSMOCG00000012433) #34	Ckmt2 (ENSMOCG00000003563) #35	Rasgrf2 (ENSMOCG00000015751) #36
Northern American deer mouse	MODERN SPECIES	6	ENSPEMG00000008658	Ipo11 (ENSPEMG00000018393)	Htr1a (ENSPEMG00000001034)	ENSPEMG00000029158	Rnf180 (ENSPEMG00000021397)	Nt5el (ENSPEMG00000021072)	Rgs7bp (ENSPEMG00000021148)	Shisal2b (ENSPEMG00000026910)	Srek1ip1 (ENSPEMG00000029903)	Cwc27 (ENSPEMG00000018111)	Adamts6 (ENSPEMG00000021478)	ENSPEMG00000022985	ENSPEMG00000016971	ENSPEMG00000028584	ENSPEMG00000027380	Edil3 (ENSPEMG00000008576) #22	ENSPEMG00000015813	Hapln1 (ENSPEMG00000020377) #24	Vcan (ENSPEMG00000021608) #25	Xrcc4 (ENSPEMG00000020663) #26	ENSPEMG00000025116	ENSPEMG00000024390	Tmem167 (ENSPEMG00000025163) #27	ENSPEMG00000029490	ENSPEMG00000031253	Atp6ap1l (ENSPEMG00000020422) #28	ENSPEMG00000030615	Rps23 (ENSPEMG00000020618) #29	Atg10 (ENSPEMG00000015489) #30	Ssbp2 (ENSPEMG00000020873) #32	Acot12 (ENSPEMG00000024088) #33
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880.bc #12	ENSGT00940000154880.cc #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102.c.a #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001017247 #12	Lysmd3 (ENSCGRG00001004064) #13	ENSCGRG00001004958	Mblac2 (ENSCGRG00001018393) #15	Cetn3 (ENSCGRG00001000920) #16	ENSCGRG00001003095	ENSCGRG00001007435	Mef2c (ENSCGRG00001006934) #17	Tmem161b (ENSCGRG00001023931) #18	Ccnh (ENSCGRG00001024363) #19	Rasa1 (ENSCGRG00001024641) #20	ENSCGRG00001007486	Cox7c (ENSCGRG00001016442)	ENSCGRG00001000944	ENSCGRG00001002366	Edil3 (ENSCGRG00001004897) #22	Hapln1 (ENSCGRG00001024344) #24	ENSCGRG00001014126 #25	Xrcc4 (ENSCGRG00001022340) #26	Tmem167 (ENSCGRG00001013866) #27	Atp6ap1l (ENSCGRG00001003786) #28	Rps23 (ENSCGRG00001005361) #29	Atg10 (ENSCGRG00001012356) #30	Ssbp2 (ENSCGRG00001010940) #32	Acot12 (ENSCGRG00001010985) #33	Zcchc9 (ENSCGRG00001018367) #34	Ckmt2 (ENSCGRG00001019134) #35	Rasgrf2 (ENSCGRG00001001184) #36	Msh3 (ENSCGRG00001012207) #37	DHFR (ENSCGRG00001012555)	Ankrd34b (ENSCGRG00001007953)
Golden Hamster	MODERN SPECIES	620	Nr2f1 (ENSMAUG00000008658)	Arrdc3 (ENSMAUG00000010410) #11	ENSMAUG00000010057	ENSMAUG00000008116 #12	ENSMAUG00000021704 #12	Lysmd3 (ENSMAUG00000001625) #13	ENSMAUG00000008528	Mblac2 (ENSMAUG00000019084) #15	Cetn3 (ENSMAUG00000021390) #16	Mef2c (ENSMAUG00000015018) #17	ENSMAUG00000015735	Tmem161b (ENSMAUG00000014575) #18	Ccnh (ENSMAUG00000017406) #19	Rasa1 (ENSMAUG00000011139) #20	Cox7c (ENSMAUG00000005056)	Edil3 (ENSMAUG00000009286) #22	ENSMAUG00000022083	Hapln1 (ENSMAUG00000008810) #24	ENSMAUG00000011125 #25	Xrcc4 (ENSMAUG00000006508) #26	Tmem167 (ENSMAUG00000000975) #27	ENSMAUG00000001668	Atp6ap1l (ENSMAUG00000001232) #28	ENSMAUG00000011243 #29	Atg10 (ENSMAUG00000011026) #30	Ssbp2 (ENSMAUG00000010660) #32	Acot12 (ENSMAUG00000019809) #33	Zcchc9 (ENSMAUG00000022026) #34	Ckmt2 (ENSMAUG00000008773) #35	Rasgrf2 (ENSMAUG00000016036) #36	Msh3 (ENSMAUG00000021619) #37
Murinae	ANCESTRAL SPECIES	24	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01070000254013	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Mus	ANCESTRAL SPECIES	22	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01070000254013	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01070000254013	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000165493	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283
Mus_B	ANCESTRAL SPECIES	13	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01070000254013	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634.c #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000165493	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283
Mouse	MODERN SPECIES	4	2210408I21Rik (ENSMUSG00000071252)	Fam172a (ENSMUSG00000064138)	Pou5f2 (ENSMUSG00000093668)	Nr2f1 (ENSMUSG00000069171)	Arrdc3 (ENSMUSG00000074794) #11	Adgrv1 (ENSMUSG00000069170) #12	Lysmd3 (ENSMUSG00000035840) #13	Polr3g (ENSMUSG00000035834)	Mblac2 (ENSMUSG00000051098) #15	Cetn3 (ENSMUSG00000021537) #16	Mef2c (ENSMUSG00000005583) #17	Tmem161b (ENSMUSG00000035762) #18	Ccnh (ENSMUSG00000021548) #19	Rasa1 (ENSMUSG00000021549) #20	Cox7c (ENSMUSG00000017778)	Edil3 (ENSMUSG00000034488) #22	Hapln1 (ENSMUSG00000021613) #24	Vcan (ENSMUSG00000021614) #25	Xrcc4 (ENSMUSG00000021615) #26	Tmem167 (ENSMUSG00000012422) #27	Atp6ap1l (ENSMUSG00000078958) #28	Rps23 (ENSMUSG00000049517) #29	Atg10 (ENSMUSG00000021619) #30	Ssbp2 (ENSMUSG00000003992) #32	Acot12 (ENSMUSG00000021620) #33	Zcchc9 (ENSMUSG00000021621) #34	Ckmt2 (ENSMUSG00000021622) #35	Rasgrf2 (ENSMUSG00000021708) #36	Msh3 (ENSMUSG00000014850) #37	Gm20379 (ENSMUSG00000100622)	Dhfr (ENSMUSG00000021707)
Mus_C	ANCESTRAL SPECIES	10	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01070000254013	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634.c #19	ENSGT00940000155846 #20	ENSGT01030000235102	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000165493	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283
Steppe mouse	MODERN SPECIES	3223																Edil3 (ENSMSIG00000030959) #22	Hapln1 (ENSMSIG00000030957) #24	Vcan (ENSMSIG00000030941) #25	Xrcc4 (ENSMSIG00000030931) #26	Tmem167 (ENSMSIG00000030926) #27	Atp6ap1l (ENSMSIG00000030916) #28	Rps23 (ENSMSIG00000030911) #29	ENSMSIG00000030909	Atg10 (ENSMSIG00000030903) #30	ENSMSIG00000030895 #32	ENSMSIG00000030893	Acot12 (ENSMSIG00000030887) #33	Zcchc9 (ENSMSIG00000030885) #34	Ckmt2 (ENSMSIG00000030879) #35	Rasgrf2 (ENSMSIG00000029126) #36
spretus	MODERN SPECIES	4	2210408I21Rik (MGP_SPRETEiJ_G0019621)	Fam172a (MGP_SPRETEiJ_G0019622)	Pou5f2 (MGP_SPRETEiJ_G0019623)	Nr2f1 (MGP_SPRETEiJ_G0019624)	Arrdc3 (MGP_SPRETEiJ_G0019625) #11	Adgrv1 (MGP_SPRETEiJ_G0019626) #12	Lysmd3 (MGP_SPRETEiJ_G0019627) #13	Polr3g (MGP_SPRETEiJ_G0019628)	Mblac2 (MGP_SPRETEiJ_G0019629) #15	Cetn3 (MGP_SPRETEiJ_G0019630) #16	Mef2c (MGP_SPRETEiJ_G0019631) #17	Tmem161b (MGP_SPRETEiJ_G0019632) #18	Ccnh (MGP_SPRETEiJ_G0019633) #19	Rasa1 (MGP_SPRETEiJ_G0019634) #20	MGP_SPRETEiJ_G0019635	Edil3 (MGP_SPRETEiJ_G0019636) #22	Hapln1 (MGP_SPRETEiJ_G0019637) #24	Vcan (MGP_SPRETEiJ_G0019638) #25	Xrcc4 (MGP_SPRETEiJ_G0019639) #26	Tmem167 (MGP_SPRETEiJ_G0019640) #27	MGP_SPRETEiJ_G0019641	Atp6ap1l (MGP_SPRETEiJ_G0019642) #28	Rps23 (MGP_SPRETEiJ_G0019643) #29	Atg10 (MGP_SPRETEiJ_G0019644) #30	MGP_SPRETEiJ_G0019645	Ssbp2 (MGP_SPRETEiJ_G0019646) #32	Acot12 (MGP_SPRETEiJ_G0019647) #33	Zcchc9 (MGP_SPRETEiJ_G0019648) #34	Ckmt2 (MGP_SPRETEiJ_G0019649) #35	Rasgrf2 (MGP_SPRETEiJ_G0019650) #36	Msh3 (MGP_SPRETEiJ_G0019651) #37
Ryukyu mouse	MODERN SPECIES	4	2210408I21Rik (MGP_CAROLIEiJ_G0018738)	Fam172a (MGP_CAROLIEiJ_G0018739)	Pou5f2 (MGP_CAROLIEiJ_G0018740)	Nr2f1 (MGP_CAROLIEiJ_G0018741)	Arrdc3 (MGP_CAROLIEiJ_G0018742) #11	Adgrv1 (MGP_CAROLIEiJ_G0018743) #12	Lysmd3 (MGP_CAROLIEiJ_G0018744) #13	Polr3g (MGP_CAROLIEiJ_G0018745)	Mblac2 (MGP_CAROLIEiJ_G0018746) #15	Cetn3 (MGP_CAROLIEiJ_G0018747) #16	Mef2c (MGP_CAROLIEiJ_G0018748) #17	Tmem161b (MGP_CAROLIEiJ_G0018749) #18	Ccnh (MGP_CAROLIEiJ_G0018750) #19	Rasa1 (MGP_CAROLIEiJ_G0018751) #20	Cox7c (MGP_CAROLIEiJ_G0018752)	Edil3 (MGP_CAROLIEiJ_G0018753) #22	Hapln1 (MGP_CAROLIEiJ_G0018754) #24	Vcan (MGP_CAROLIEiJ_G0018755) #25	Xrcc4 (MGP_CAROLIEiJ_G0018756) #26	Tmem167 (MGP_CAROLIEiJ_G0018757) #27	MGP_CAROLIEiJ_G0018758	Atp6ap1l (MGP_CAROLIEiJ_G0018759) #28	Rps23 (MGP_CAROLIEiJ_G0018760) #29	Atg10 (MGP_CAROLIEiJ_G0018761) #30	Ssbp2 (MGP_CAROLIEiJ_G0018762) #32	Acot12 (MGP_CAROLIEiJ_G0018763) #33	Zcchc9 (MGP_CAROLIEiJ_G0018764) #34	Ckmt2 (MGP_CAROLIEiJ_G0018765) #35	Rasgrf2 (MGP_CAROLIEiJ_G0018766) #36	Msh3 (MGP_CAROLIEiJ_G0018767) #37	Dhfr (MGP_CAROLIEiJ_G0018768)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0015817	Fam172a (MGP_PahariEiJ_G0015818)	Pou5f2 (MGP_PahariEiJ_G0015819)	Nr2f1 (MGP_PahariEiJ_G0015820)	Arrdc3 (MGP_PahariEiJ_G0015821) #11	Adgrv1 (MGP_PahariEiJ_G0015822) #12	Lysmd3 (MGP_PahariEiJ_G0015823) #13	Polr3g (MGP_PahariEiJ_G0015824)	Mblac2 (MGP_PahariEiJ_G0015825) #15	Cetn3 (MGP_PahariEiJ_G0015826) #16	Mef2c (MGP_PahariEiJ_G0015827) #17	Tmem161b (MGP_PahariEiJ_G0015828) #18	Ccnh (MGP_PahariEiJ_G0015829) #19	Rasa1 (MGP_PahariEiJ_G0015830) #20	Cox7c (MGP_PahariEiJ_G0015831)	Edil3 (MGP_PahariEiJ_G0015832) #22	Hapln1 (MGP_PahariEiJ_G0015833) #24	Vcan (MGP_PahariEiJ_G0015834) #25	Xrcc4 (MGP_PahariEiJ_G0015835) #26	Tmem167 (MGP_PahariEiJ_G0015836) #27	Vmn1r75 (MGP_PahariEiJ_G0015837)	Atp6ap1l (MGP_PahariEiJ_G0015838) #28	Rps23 (MGP_PahariEiJ_G0015839) #29	Atg10 (MGP_PahariEiJ_G0015840) #30	Ssbp2 (MGP_PahariEiJ_G0015841) #32	Acot12 (MGP_PahariEiJ_G0015842) #33	Zcchc9 (MGP_PahariEiJ_G0015843) #34	Ckmt2 (MGP_PahariEiJ_G0015844) #35	Rasgrf2 (MGP_PahariEiJ_G0015845) #36	Msh3 (MGP_PahariEiJ_G0015846) #37	Dhfr (MGP_PahariEiJ_G0015847)
Rat	MODERN SPECIES	11	Arrdc3 (ENSRNOG00000045649) #11	ENSRNOG00000069696	Adgrv1 (ENSRNOG00000016306) #12	Lysmd3 (ENSRNOG00000016298) #13	Polr3g (ENSRNOG00000016260)	Mblac2 (ENSRNOG00000016252) #15	Cetn3 (ENSRNOG00000050877) #16	LOC120100658 (ENSRNOG00000065778)	Mef2c (ENSRNOG00000033134) #17	AABR07007399.1 (ENSRNOG00000049010)	Tmem161b (ENSRNOG00000032414) #18	Ccnh (ENSRNOG00000031656) #19	Rasa1 (ENSRNOG00000029185) #20	Cox7c (ENSRNOG00000030237)	ENSRNOG00000064811	Edil3 (ENSRNOG00000033064) #22	ENSRNOG00000062828	Hapln1 (ENSRNOG00000032002) #24	Vcan (ENSRNOG00000029212) #25	Xrcc4 (ENSRNOG00000029966) #26	Tmem167a (ENSRNOG00000016686) #27	Atp6ap1l (ENSRNOG00000040201) #28	Rps23 (ENSRNOG00000016580) ##29	Atg10 (ENSRNOG00000016342) #30	Ssbp2 (ENSRNOG00000016213) #32	Acot12 (ENSRNOG00000061414) #33	Zcchc9 (ENSRNOG00000051682) #34	Ckmt2 (ENSRNOG00000055450) #35	Rasgrf2 (ENSRNOG00000056151) #36	ENSRNOG00000064838	ENSRNOG00000069130
Upper Galilee mountains blind mole rat	MODERN SPECIES	1658																Edil3 (ENSNGAG00000011097) #22	Hapln1 (ENSNGAG00000001309) #24	ENSNGAG00000003748 #25	Xrcc4 (ENSNGAG00000013424) #26	Tmem167 (ENSNGAG00000018278) #27	Atp6ap1l (ENSNGAG00000000435) #28	Rps23 (ENSNGAG00000006354) #29	Atg10 (ENSNGAG00000011883) #30	Ssbp2 (ENSNGAG00000011787) #32	Acot12 (ENSNGAG00000009467) #33	Zcchc9 (ENSNGAG00000017736) #34	Ckmt2 (ENSNGAG00000020619) #35	Rasgrf2 (ENSNGAG00000008843) #36	Msh3 (ENSNGAG00000014298) #37	Dhfr (ENSNGAG00000018704)	ENSNGAG00000019496
Lesser Egyptian jerboa	MODERN SPECIES	45	ENSJJAG00000012827 #12	ENSJJAG00000021631 #12	ENSJJAG00000009537 #12	Lysmd3 (ENSJJAG00000023942) #13	ENSJJAG00000001250	Mblac2 (ENSJJAG00000005655) #15	Cetn3 (ENSJJAG00000023827) #16	Mef2c (ENSJJAG00000013244) #17	Tmem161b (ENSJJAG00000024009) #18	ENSJJAG00000011002 #19	Rasa1 (ENSJJAG00000012863) #20	ENSJJAG00000003776	ENSJJAG00000001446	ENSJJAG00000023444	ENSJJAG00000012743	Edil3 (ENSJJAG00000010032) #22	Hapln1 (ENSJJAG00000012871) #24	ENSJJAG00000017589 #25	Xrcc4 (ENSJJAG00000013678) #26	ENSJJAG00000019023 #27	Atp6ap1l (ENSJJAG00000015522) #28	Rps23 (ENSJJAG00000014219) #29	Atg10 (ENSJJAG00000013587) #30	Ssbp2 (ENSJJAG00000010960) #32	Acot12 (ENSJJAG00000010888) #33	Zcchc9 (ENSJJAG00000015479) #34	Ckmt2 (ENSJJAG00000016214) #35	Rasgrf2 (ENSJJAG00000016070) #36	Msh3 (ENSJJAG00000021941) #37	ENSJJAG00000011657	Ankrd34b (ENSJJAG00000000619)
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT01030000234916	ENSGT00550000074784.a.b ##29	ENSGT01100000263873	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949.f #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Marmotini	ANCESTRAL SPECIES	23	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880.hc #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949.f #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Marmotini_b	ANCESTRAL SPECIES	89	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880.hc #12	ENSGT00940000158711 #13	ENSGT01090000260129	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b.k #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00910000147325	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949.f #37	ENSGT00390000010283
Arctic ground squirrel	MODERN SPECIES	140															ENSUPAG00010007089	EDIL3 (ENSUPAG00010006995) #22	HAPLN1 (ENSUPAG00010006988) #24	ENSUPAG00010006947 #25	ENSUPAG00010006939	XRCC4 (ENSUPAG00010006926) #26	TMEM167A (ENSUPAG00010006916) #27	ENSUPAG00010006903 #28	RPS23 (ENSUPAG00010006892) #29	ATG10 (ENSUPAG00010006861) #30	SSBP2 (ENSUPAG00010006805) #32	ACOT12 (ENSUPAG00010006783) #33	CKMT2 (ENSUPAG00010006756) #35	ENSUPAG00010006730 #36	ENSUPAG00010006712 #36	ENSUPAG00010006689 #37
Squirrel	MODERN SPECIES	69	ENSSTOG00000019847	ARRDC3 (ENSSTOG00000020450) #11	ENSSTOG00000031315 #12	ENSSTOG00000034589 #12	LYSMD3 (ENSSTOG00000008678) #13	ENSSTOG00000008664	MBLAC2 (ENSSTOG00000023398) #15	CETN3 (ENSSTOG00000012271) #16	MEF2C (ENSSTOG00000001883) #17	ENSSTOG00000011141 #18	CCNH (ENSSTOG00000000659) #19	RASA1 (ENSSTOG00000000649) #20	COX7C (ENSSTOG00000034413)	ENSSTOG00000023841	ENSSTOG00000022943	EDIL3 (ENSSTOG00000003893) #22	HAPLN1 (ENSSTOG00000003875) #24	ENSSTOG00000026716 #25	XRCC4 (ENSSTOG00000023468) #26	ENSSTOG00000031235 #27	ENSSTOG00000005230 #28	ENSSTOG00000000824 ##29	ATG10 (ENSSTOG00000005212) #30	SSBP2 (ENSSTOG00000001418) #32	ACOT12 (ENSSTOG00000001413) #33	ZCCHC9 (ENSSTOG00000001407) #34	CKMT2 (ENSSTOG00000001399) #35	RASGRF2 (ENSSTOG00000001380) #36	MSH3 (ENSSTOG00000025220) #37	ENSSTOG00000028494
Alpin marmot	MODERN SPECIES	48								MEF2C (ENSMMMG00000008360) #17	ENSMMMG00000008337	ENSMMMG00000008322 #18	ENSMMMG00000008314 #18	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #19	RASA1 (ENSMMMG00000008245) #20	COX7C (ENSMMMG00000008226)	EDIL3 (ENSMMMG00000008149) #22	HAPLN1 (ENSMMMG00000008103) #24	ENSMMMG00000008014 #25	XRCC4 (ENSMMMG00000008004) #26	ENSMMMG00000007986 #27	ENSMMMG00000007968 #28	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953) #29	ATG10 (ENSMMMG00000007945) #30	SSBP2 (ENSMMMG00000007897) #32	ACOT12 (ENSMMMG00000007863) #33	ZCCHC9 (ENSMMMG00000007846) #34	CKMT2 (ENSMMMG00000007828) #35	ENSMMMG00000007796 #36	MSH3 (ENSMMMG00000007726) #37	ENSMMMG00000007718
Eurasian red squirrel	MODERN SPECIES	15	ARRDC3 (ENSSVLG00005007017) #11	ENSSVLG00005007056	ADGRV1 (ENSSVLG00005007157) #12	ENSSVLG00005007509	LYSMD3 (ENSSVLG00005007523) #13	ENSSVLG00005007556	ENSSVLG00005007572	MBLAC2 (ENSSVLG00005007608) #15	CETN3 (ENSSVLG00005007638) #16	ENSSVLG00005007697	MEF2C (ENSSVLG00005007790) #17	TMEM161B (ENSSVLG00005007974) #18	CCNH (ENSSVLG00005008091) #19	RASA1 (ENSSVLG00005008223) #20	ENSSVLG00005008592	EDIL3 (ENSSVLG00005008647) #22	HAPLN1 (ENSSVLG00005008777) #24	VCAN (ENSSVLG00005008932) #25	XRCC4 (ENSSVLG00005009326) #26	ENSSVLG00005009361 #27	ENSSVLG00005009400 #28	ENSSVLG00005009458 ##29	ATG10 (ENSSVLG00005009563) #30	SSBP2 (ENSSVLG00005009766) #32	ACOT12 (ENSSVLG00005010445) #33	ZCCHC9 (ENSSVLG00005010577) #34	CKMT2 (ENSSVLG00005010620) #35	RASGRF2 (ENSSVLG00005010807) #36	MSH3 (ENSSVLG00005010940) #37	ENSSVLG00005011452	ANKRD34B (ENSSVLG00005011548)
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880.gc #12	ENSGT00940000158711 #13	ENSGT01100000264660.a	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT01100000263873	ENSGT00550000074784.b ##29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880.gc #12	ENSGT00940000158711 #13	ENSGT01100000264660.a	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT01100000263873	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000164293	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880.gc #12	ENSGT00940000158711 #13	ENSGT01100000264660.a	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Long-tailed chinchilla	MODERN SPECIES	125	NR2F1 (ENSCLAG00000005596)	ARRDC3 (ENSCLAG00000005661) #11	ENSCLAG00000005769 #12	ENSCLAG00000005851 #12	ENSCLAG00000006022 #12	LYSMD3 (ENSCLAG00000006052) #13	ENSCLAG00000006118	MBLAC2 (ENSCLAG00000006185) #15	CETN3 (ENSCLAG00000006215) #16	MEF2C (ENSCLAG00000003422) #17	ENSCLAG00000003728	TMEM161B (ENSCLAG00000003850) #18	CCNH (ENSCLAG00000004012) #19	RASA1 (ENSCLAG00000004110) #20	ENSCLAG00000004179	EDIL3 (ENSCLAG00000004305) #22	HAPLN1 (ENSCLAG00000004483) #24	ENSCLAG00000004575 #25	XRCC4 (ENSCLAG00000004677) #26	TMEM167A (ENSCLAG00000004734) #27	Rps23 (ENSCLAG00000004798) #29	ENSCLAG00000004838	ATG10 (ENSCLAG00000004893) #30	SSBP2 (ENSCLAG00000004986) #32	ACOT12 (ENSCLAG00000005180) #33	ZCCHC9 (ENSCLAG00000005289) #34	CKMT2 (ENSCLAG00000005343) #35	RASGRF2 (ENSCLAG00000005490) #36	MSH3 (ENSCLAG00000006074) #37	ENSCLAG00000005365	ANKRD34B (ENSCLAG00000017846)
Degu	MODERN SPECIES	170									TMEM161B (ENSODEG00000005530) #18	CCNH (ENSODEG00000005505) #19	RASA1 (ENSODEG00000005418) #20	ENSODEG00000019183	ENSODEG00000005383	ENSODEG00000005376	ENSODEG00000005359	EDIL3 (ENSODEG00000005260) #22	HAPLN1 (ENSODEG00000005201) #24	ENSODEG00000005176 #25	ENSODEG00000005159	XRCC4 (ENSODEG00000005147) #26	ENSODEG00000005125 #27	ENSODEG00000005103 #28	RPS23 (ENSODEG00000005092) #29	ATG10 (ENSODEG00000005078) #30	SSBP2 (ENSODEG00000004975) #32	ACOT12 (ENSODEG00000004907) #33	ENSODEG00000004349 #34	CKMT2 (ENSODEG00000004322) #35	RASGRF2 (ENSODEG00000004227) #36	MSH3 (ENSODEG00000004134) #37	FAM151B (ENSODEG00000004092)
Guinea pig	MODERN SPECIES	1	FAM172A (ENSCPOG00000013935)	NR2F1 (ENSCPOG00000005883)	ARRDC3 (ENSCPOG00000002749) #11	ENSCPOG00000030916 #12	ENSCPOG00000004008 #12	ENSCPOG00000035017 #12	LYSMD3 (ENSCPOG00000031696) #13	ENSCPOG00000036643	MBLAC2 (ENSCPOG00000036054) #15	CETN3 (ENSCPOG00000023805) #16	MEF2C (ENSCPOG00000035485) #17	TMEM161B (ENSCPOG00000003613) #18	CCNH (ENSCPOG00000007894) #19	RASA1 (ENSCPOG00000007883) #20	COX7C (ENSCPOG00000037322)	EDIL3 (ENSCPOG00000006986) #22	HAPLN1 (ENSCPOG00000037148) #24	ENSCPOG00000039167 #25	XRCC4 (ENSCPOG00000012258) #26	TMEM167A (ENSCPOG00000026186) #27	ENSCPOG00000011131 #28	RPS23 (ENSCPOG00000037620) #29	ENSCPOG00000022705	ATG10 (ENSCPOG00000032098) #30	SSBP2 (ENSCPOG00000001712) #32	ACOT12 (ENSCPOG00000009718) #33	ZCCHC9 (ENSCPOG00000003947) #34	CKMT2 (ENSCPOG00000003941) #35	RASGRF2 (ENSCPOG00000006307) #36	MSH3 (ENSCPOG00000011122) #37	ENSCPOG00000020993
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000038073 #12	ENSHGLG00000036506	LYSMD3 (ENSHGLG00000039807) #13	ENSHGLG00000039707	MBLAC2 (ENSHGLG00000046616) #15	CETN3 (ENSHGLG00000036397) #16	MEF2C (ENSHGLG00000008715) #17	ENSHGLG00000042125	ENSHGLG00000002953	TMEM161B (ENSHGLG00000016157) #18	ENSHGLG00000012753	CCNH (ENSHGLG00000007779) #19	RASA1 (ENSHGLG00000005734) #20	ENSHGLG00000033884	COX7C (ENSHGLG00000032953)	EDIL3 (ENSHGLG00000013218) #22	HAPLN1 (ENSHGLG00000034114) #24	VCAN (ENSHGLG00000010244) #25	XRCC4 (ENSHGLG00000032875) #26	TMEM167A (ENSHGLG00000036731) #27	ENSHGLG00000036000 #28	ENSHGLG00000008165 ##29	ENSHGLG00000007844 #30
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c	ENSGT00940000157876	ENSGT00940000155411.c #11	ENSGT00940000154880 #12	ENSGT00940000158711 #13	ENSGT01100000265337	ENSGT00390000017819 #15	ENSGT00940000157995 #16	ENSGT00940000157492.b #17	ENSGT00390000000672.a.b #18	ENSGT00390000008634 #19	ENSGT00940000155846 #20	ENSGT00390000018086.x	ENSGT00940000158144 #22	ENSGT00940000159267 #24	ENSGT00940000156102 #25	ENSGT00390000017079 #26	ENSGT00940000155186 #27	ENSGT00940000158156 #28	ENSGT00550000074784.a.a #29	ENSGT00390000000924 #30	ENSGT00950000183049.A #32	ENSGT00940000160328 #33	ENSGT00950000183041.C #34	ENSGT00950000182772.B.a.a #35	ENSGT00940000155679 #36	ENSGT00550000074949 #37	ENSGT00390000010283	ENSGT00390000012355.A.a
Rabbit	MODERN SPECIES	2	LYSMD3 (ENSOCUG00000023323) #13	ENSOCUG00000010624	MBLAC2 (ENSOCUG00000026716) #15	CETN3 (ENSOCUG00000005711) #16	MEF2C (ENSOCUG00000029354) #17	TMEM161B (ENSOCUG00000005147) #18	ENSOCUG00000033164	ENSOCUG00000035816	CCNH (ENSOCUG00000004659) #19	RASA1 (ENSOCUG00000004646) #20	ENSOCUG00000039253	ENSOCUG00000006715	ENSOCUG00000002319	ENSOCUG00000029582	ENSOCUG00000029665	EDIL3 (ENSOCUG00000017338) #22	HAPLN1 (ENSOCUG00000002630) #24	VCAN (ENSOCUG00000002613) #25	XRCC4 (ENSOCUG00000015052) #26	ENSOCUG00000009326 #27	ENSOCUG00000014110 #28	ENSOCUG00000010363 #29	ENSOCUG00000008736 #30	ENSOCUG00000005365 #32	ACOT12 (ENSOCUG00000005358) #33	ZCCHC9 (ENSOCUG00000011215) #34	CKMT2 (ENSOCUG00000011211) #35	RASGRF2 (ENSOCUG00000003533) #36	MSH3 (ENSOCUG00000016921) #37	ENSOCUG00000005127	ENSOCUG00000023992
Pika	MODERN SPECIES	545																ENSOPRG00000016900 #22	ENSOPRG00000016896 #24	ENSOPRG00000016872 #25
Tree shrew	MODERN SPECIES	3197																EDIL3 (ENSTBEG00000013547) #22